Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010616.t1 | XP_003612158.1 | 93.6 | 282 | 17 | 1 | 1 | 282 | 22 | 302 | 3.50E-148 | 534.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010616.t1 | Q6YBV1 | 46.0 | 274 | 110 | 8 | 4 | 273 | 35 | 274 | 5.3e-52 | 206.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010616.t1 | B7UCW4 | 93.6 | 282 | 17 | 1 | 1 | 282 | 22 | 302 | 2.5e-148 | 534.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010616.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010616.t1 | MTR_5g021930 | 96.454 | 282 | 9 | 1 | 1 | 282 | 22 | 302 | 0.0 | 571 |
| MS.gene010616.t1 | MTR_4g084550 | 67.164 | 67 | 21 | 1 | 5 | 71 | 60 | 125 | 9.03e-27 | 103 |
| MS.gene010616.t1 | MTR_8g107210 | 70.769 | 65 | 18 | 1 | 7 | 71 | 94 | 157 | 1.37e-25 | 104 |
| MS.gene010616.t1 | MTR_5g081990 | 59.459 | 74 | 26 | 2 | 9 | 79 | 33 | 105 | 1.93e-24 | 97.4 |
| MS.gene010616.t1 | MTR_7g060630 | 67.692 | 65 | 20 | 1 | 7 | 71 | 6 | 69 | 6.30e-24 | 96.7 |
| MS.gene010616.t1 | MTR_4g063735 | 68.254 | 63 | 19 | 1 | 9 | 71 | 25 | 86 | 1.17e-23 | 97.1 |
| MS.gene010616.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.71e-22 | 93.2 |
| MS.gene010616.t1 | MTR_1g019130 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.87e-22 | 93.6 |
| MS.gene010616.t1 | MTR_8g095580 | 78.723 | 47 | 10 | 0 | 25 | 71 | 97 | 143 | 2.25e-19 | 83.2 |
| MS.gene010616.t1 | MTR_3g088485 | 76.596 | 47 | 11 | 0 | 25 | 71 | 95 | 141 | 3.91e-19 | 82.8 |
| MS.gene010616.t1 | MTR_7g025010 | 48.438 | 64 | 32 | 1 | 9 | 72 | 47 | 109 | 1.10e-14 | 74.3 |
| MS.gene010616.t1 | MTR_2g015000 | 44.928 | 69 | 37 | 1 | 3 | 71 | 49 | 116 | 4.38e-14 | 72.4 |
| MS.gene010616.t1 | MTR_7g066060 | 87.879 | 33 | 4 | 0 | 54 | 86 | 465 | 497 | 7.14e-13 | 68.9 |
| MS.gene010616.t1 | MTR_4g088070 | 43.548 | 62 | 34 | 1 | 9 | 70 | 29 | 89 | 1.30e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010616.t1 | AT2G17950 | 41.860 | 258 | 103 | 9 | 4 | 235 | 33 | 269 | 8.18e-48 | 161 |
| MS.gene010616.t1 | AT5G59340 | 69.697 | 66 | 19 | 1 | 6 | 71 | 11 | 75 | 9.67e-26 | 102 |
| MS.gene010616.t1 | AT3G18010 | 70.769 | 65 | 18 | 1 | 7 | 71 | 74 | 137 | 9.88e-26 | 104 |
| MS.gene010616.t1 | AT2G28610 | 65.152 | 66 | 22 | 1 | 6 | 71 | 5 | 69 | 2.53e-23 | 95.9 |
| MS.gene010616.t1 | AT3G11260 | 65.079 | 63 | 21 | 1 | 9 | 71 | 24 | 85 | 3.92e-23 | 94.0 |
| MS.gene010616.t1 | AT5G05770 | 62.319 | 69 | 25 | 1 | 9 | 77 | 29 | 96 | 4.76e-23 | 92.0 |
| MS.gene010616.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 1.14e-22 | 92.8 |
| MS.gene010616.t1 | AT1G46480 | 64.062 | 64 | 22 | 1 | 8 | 71 | 89 | 151 | 7.56e-22 | 92.0 |
| MS.gene010616.t1 | AT2G01500 | 61.017 | 59 | 22 | 1 | 6 | 64 | 58 | 115 | 5.16e-19 | 84.7 |
| MS.gene010616.t1 | AT5G45980 | 52.381 | 63 | 29 | 1 | 9 | 71 | 55 | 116 | 5.05e-15 | 74.3 |
| MS.gene010616.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.11e-14 | 73.9 |
| MS.gene010616.t1 | AT2G33880 | 45.714 | 70 | 37 | 1 | 3 | 72 | 49 | 117 | 1.11e-14 | 73.9 |
| MS.gene010616.t1 | AT1G20700 | 39.130 | 69 | 41 | 1 | 9 | 77 | 33 | 100 | 7.68e-11 | 59.7 |
Find 59 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 5.1:+13124958 | None:intergenic |
| AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 5.1:+13124824 | None:intergenic |
| CTGTTATTGCTGCTGCTAAT+TGG | 0.280712 | 5.1:-13125801 | MS.gene010616:CDS |
| CAAATTTAATTAGCATAATC+TGG | 0.300562 | 5.1:+13124641 | None:intergenic |
| TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 5.1:+13124917 | None:intergenic |
| TCTTCCATGATTTCTTCATT+AGG | 0.332083 | 5.1:+13124875 | None:intergenic |
| CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 5.1:+13125976 | None:intergenic |
| TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 5.1:-13124851 | MS.gene010616:CDS |
| ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 5.1:+13126036 | None:intergenic |
| CAGATTGGTAACTATGGATA+TGG | 0.369373 | 5.1:-13125546 | MS.gene010616:CDS |
| AAATCAAATTCATCTAACTA+TGG | 0.374371 | 5.1:-13124755 | MS.gene010616:CDS |
| TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 5.1:+13124806 | None:intergenic |
| GCAATAACAGTATTGTTGTT+TGG | 0.399113 | 5.1:+13125814 | None:intergenic |
| GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 5.1:-13125552 | MS.gene010616:CDS |
| TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 5.1:-13125949 | MS.gene010616:CDS |
| TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 5.1:+13125775 | None:intergenic |
| GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 5.1:-13124667 | MS.gene010616:CDS |
| AATTACAACATTTCATCTGC+TGG | 0.424173 | 5.1:-13125721 | MS.gene010616:intron |
| TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 5.1:-13124696 | MS.gene010616:CDS |
| ATGAAATGTTGTAATTAGAA+TGG | 0.431892 | 5.1:+13125728 | None:intergenic |
| CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 5.1:+13124807 | None:intergenic |
| CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 5.1:-13125879 | MS.gene010616:CDS |
| GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 5.1:+13125831 | None:intergenic |
| CATATCCATAGTTACCAATC+TGG | 0.452599 | 5.1:+13125547 | None:intergenic |
| TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 5.1:+13125832 | None:intergenic |
| GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 5.1:-13124674 | MS.gene010616:CDS |
| AAGACCTAATGAAGAAATCA+TGG | 0.463541 | 5.1:-13124879 | MS.gene010616:CDS |
| ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 5.1:-13125561 | MS.gene010616:CDS |
| AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 5.1:+13124759 | None:intergenic |
| AGATCAGATAAGAATATTGA+AGG | 0.488670 | 5.1:-13126028 | MS.gene010616:CDS |
| AACCCTCACTTAGGATGGAT+TGG | 0.494244 | 5.1:-13124953 | MS.gene010616:CDS |
| AAGGATCTTTACTACAACAA+TGG | 0.504008 | 5.1:-13126009 | MS.gene010616:CDS |
| AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 5.1:-13125937 | MS.gene010616:CDS |
| GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 5.1:-13124986 | MS.gene010616:CDS |
| ATCATGTTCTTCTGCTGAGA+TGG | 0.513607 | 5.1:-13125580 | MS.gene010616:CDS |
| TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 5.1:-13125007 | MS.gene010616:CDS |
| ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 5.1:-13124794 | MS.gene010616:CDS |
| TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 5.1:-13124728 | MS.gene010616:CDS |
| CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 5.1:-13124958 | MS.gene010616:CDS |
| GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 5.1:-13124716 | MS.gene010616:CDS |
| GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 5.1:+13124798 | None:intergenic |
| AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 5.1:+13124679 | None:intergenic |
| TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 5.1:+13124797 | None:intergenic |
| AATTTGATTTGAGGTTACAA+TGG | 0.576284 | 5.1:+13124768 | None:intergenic |
| TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 5.1:-13125570 | MS.gene010616:CDS |
| ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 5.1:-13124748 | MS.gene010616:CDS |
| TCAAATTCATCTAACTATGG+TGG | 0.598577 | 5.1:-13124752 | MS.gene010616:CDS |
| AGTACCATAAACCCTCACTT+AGG | 0.599826 | 5.1:-13124962 | MS.gene010616:CDS |
| TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 5.1:-13125532 | MS.gene010616:CDS |
| AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 5.1:-13125963 | MS.gene010616:CDS |
| ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 5.1:+13124666 | None:intergenic |
| GACCAATCCATCCTAAGTGA+GGG | 0.618647 | 5.1:+13124951 | None:intergenic |
| TGACCAATCCATCCTAAGTG+AGG | 0.637357 | 5.1:+13124950 | None:intergenic |
| GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 5.1:-13126065 | MS.gene010616:CDS |
| CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 5.1:+13124810 | None:intergenic |
| ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 5.1:+13124811 | None:intergenic |
| ATCATGGAAGAATATGAACA+AGG | 0.690834 | 5.1:-13124863 | MS.gene010616:CDS |
| GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 5.1:-13126062 | MS.gene010616:CDS |
| CATGCTGAAGACATTCATGG+TGG | 0.794190 | 5.1:-13124791 | MS.gene010616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATATGAAAATATTAAA+GGG | + | chr5.1:13125269-13125288 | None:intergenic | 10.0% |
| !! | CATAGATATGAAAATATTAA+AGG | + | chr5.1:13125270-13125289 | None:intergenic | 15.0% |
| !!! | ATTAAAACTCTACTTTTTTT+AGG | - | chr5.1:13125589-13125608 | MS.gene010616:CDS | 15.0% |
| !!! | TCTTTTATTTAATAACCAAA+AGG | - | chr5.1:13125405-13125424 | MS.gene010616:intron | 15.0% |
| !!! | TTTTTAATTCTTAGTTTATG+AGG | + | chr5.1:13125465-13125484 | None:intergenic | 15.0% |
| !! | AAATCAAATTCATCTAACTA+TGG | - | chr5.1:13125960-13125979 | MS.gene010616:CDS | 20.0% |
| !! | ACACACACAAAAATTAATAT+AGG | + | chr5.1:13125094-13125113 | None:intergenic | 20.0% |
| !! | ATGAAATGTTGTAATTAGAA+TGG | + | chr5.1:13124990-13125009 | None:intergenic | 20.0% |
| !!! | TTCTTATTATGGAAATTTTC+TGG | + | chr5.1:13125436-13125455 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTGTCTCAAAA+AGG | + | chr5.1:13125034-13125053 | None:intergenic | 20.0% |
| ! | AGATCAGATAAGAATATTGA+AGG | - | chr5.1:13124687-13124706 | MS.gene010616:CDS | 25.0% |
| !! | AAGGCAAAAATGTCTTTTAT+TGG | - | chr5.1:13124797-13124816 | MS.gene010616:CDS | 25.0% |
| !! | ATTTTTGTGTGTGTTTATGT+AGG | - | chr5.1:13125100-13125119 | MS.gene010616:intron | 25.0% |
| !! | TTTTTGTGTGTGTTTATGTA+GGG | - | chr5.1:13125101-13125120 | MS.gene010616:intron | 25.0% |
| !!! | AATTTGATTTGAGGTTACAA+TGG | + | chr5.1:13125950-13125969 | None:intergenic | 25.0% |
| !!! | AGTTAGATGAATTTGATTTG+AGG | + | chr5.1:13125959-13125978 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCGTCTTCTTCTT+AGG | - | chr5.1:13125689-13125708 | MS.gene010616:intron | 25.0% |
| AAGACCTAATGAAGAAATCA+TGG | - | chr5.1:13125836-13125855 | MS.gene010616:CDS | 30.0% | |
| AAGGATCTTTACTACAACAA+TGG | - | chr5.1:13124706-13124725 | MS.gene010616:CDS | 30.0% | |
| AATTACAACATTTCATCTGC+TGG | - | chr5.1:13124994-13125013 | MS.gene010616:CDS | 30.0% | |
| ATCATGGAAGAATATGAACA+AGG | - | chr5.1:13125852-13125871 | MS.gene010616:CDS | 30.0% | |
| ATTCTTATCTGATCTGTTGT+TGG | + | chr5.1:13124682-13124701 | None:intergenic | 30.0% | |
| TATGAACAAGGACAAGAAAA+TGG | - | chr5.1:13125864-13125883 | MS.gene010616:CDS | 30.0% | |
| TCAAATTCATCTAACTATGG+TGG | - | chr5.1:13125963-13125982 | MS.gene010616:CDS | 30.0% | |
| TCTTCCATGATTTCTTCATT+AGG | + | chr5.1:13125843-13125862 | None:intergenic | 30.0% | |
| TGAGGTTGTTCTTCTTATTA+TGG | + | chr5.1:13125447-13125466 | None:intergenic | 30.0% | |
| TTTGCATAAGCTGAAGAATA+TGG | + | chr5.1:13125801-13125820 | None:intergenic | 30.0% | |
| ! | AATTTTCTGGATTGTCCTTT+TGG | + | chr5.1:13125423-13125442 | None:intergenic | 30.0% |
| ! | GCAATAACAGTATTGTTGTT+TGG | + | chr5.1:13124904-13124923 | None:intergenic | 30.0% |
| AGACAGTATGGTAAGATTGA+AGG | - | chr5.1:13124778-13124797 | MS.gene010616:CDS | 35.0% | |
| ATTCAATCCATGATCCATCA+TGG | - | chr5.1:13125331-13125350 | MS.gene010616:intron | 35.0% | |
| ATTCATCTAACTATGGTGGT+TGG | - | chr5.1:13125967-13125986 | MS.gene010616:CDS | 35.0% | |
| CATATCCATAGTTACCAATC+TGG | + | chr5.1:13125171-13125190 | None:intergenic | 35.0% | |
| CTAGAGAAAGACAGAAGAAA+AGG | - | chr5.1:13124836-13124855 | MS.gene010616:CDS | 35.0% | |
| CTTGTGTATCAAATCTCACA+TGG | + | chr5.1:13125366-13125385 | None:intergenic | 35.0% | |
| TAGTGAAAGTGAACTCTTGT+TGG | + | chr5.1:13125534-13125553 | None:intergenic | 35.0% | |
| ! | ACCCTAAAACTCTTTTCCAT+TGG | + | chr5.1:13125202-13125221 | None:intergenic | 35.0% |
| ! | CAGATTGGTAACTATGGATA+TGG | - | chr5.1:13125169-13125188 | MS.gene010616:intron | 35.0% |
| ! | CCCAATGGAAAAGAGTTTTA+GGG | - | chr5.1:13125198-13125217 | MS.gene010616:intron | 35.0% |
| ! | CCCTAAAACTCTTTTCCATT+GGG | + | chr5.1:13125201-13125220 | None:intergenic | 35.0% |
| ! | TCCCAATGGAAAAGAGTTTT+AGG | - | chr5.1:13125197-13125216 | MS.gene010616:intron | 35.0% |
| ! | TGTTGTTGTTCATGTTGATC+AGG | + | chr5.1:13124943-13124962 | None:intergenic | 35.0% |
| !! | TTTGGTGCTCTTTGAATGAT+GGG | + | chr5.1:13124886-13124905 | None:intergenic | 35.0% |
| AAAGGGAGGGTTTCAATTTC+AGG | + | chr5.1:13125894-13125913 | None:intergenic | 40.0% | |
| AGATTCAGAGAATCTCTGCT+AGG | - | chr5.1:13124752-13124771 | MS.gene010616:CDS | 40.0% | |
| AGTACCATAAACCCTCACTT+AGG | - | chr5.1:13125753-13125772 | MS.gene010616:CDS | 40.0% | |
| ATCATGTTCTTCTGCTGAGA+TGG | - | chr5.1:13125135-13125154 | MS.gene010616:intron | 40.0% | |
| ATGCATAGGGAATAAAGGGA+GGG | + | chr5.1:13125907-13125926 | None:intergenic | 40.0% | |
| ATGCATGCTGAAGACATTCA+TGG | - | chr5.1:13125921-13125940 | MS.gene010616:CDS | 40.0% | |
| CAGCATGCATAGGGAATAAA+GGG | + | chr5.1:13125911-13125930 | None:intergenic | 40.0% | |
| CTGTTATTGCTGCTGCTAAT+TGG | - | chr5.1:13124914-13124933 | MS.gene010616:CDS | 40.0% | |
| GAACTTAGCCTCAACTCTTA+CGG | - | chr5.1:13126041-13126060 | MS.gene010616:CDS | 40.0% | |
| GAAGATGCAGGATTCATGTA+TGG | - | chr5.1:13125999-13126018 | MS.gene010616:CDS | 40.0% | |
| GAATGTCTTCAGCATGCATA+GGG | + | chr5.1:13125920-13125939 | None:intergenic | 40.0% | |
| TCAGCATGCATAGGGAATAA+AGG | + | chr5.1:13125912-13125931 | None:intergenic | 40.0% | |
| TCTGCTAGGTTAAGACAGTA+TGG | - | chr5.1:13124766-13124785 | MS.gene010616:CDS | 40.0% | |
| TGAAAGTGAACTCTTGTTGG+TGG | + | chr5.1:13125531-13125550 | None:intergenic | 40.0% | |
| TGAATGTCTTCAGCATGCAT+AGG | + | chr5.1:13125921-13125940 | None:intergenic | 40.0% | |
| !! | GTTTGGTGCTCTTTGAATGA+TGG | + | chr5.1:13124887-13124906 | None:intergenic | 40.0% |
| AACCCTCACTTAGGATGGAT+TGG | - | chr5.1:13125762-13125781 | MS.gene010616:CDS | 45.0% | |
| ACCTACAACCGTAAGAGTTG+AGG | + | chr5.1:13126052-13126071 | None:intergenic | 45.0% | |
| AGAGTTGAGGCTAAGTTCCA+AGG | + | chr5.1:13126039-13126058 | None:intergenic | 45.0% | |
| ATGGTTACTGTAGGCCAGAT+TGG | - | chr5.1:13125154-13125173 | MS.gene010616:intron | 45.0% | |
| CATGCATAGGGAATAAAGGG+AGG | + | chr5.1:13125908-13125927 | None:intergenic | 45.0% | |
| CATGCTGAAGACATTCATGG+TGG | - | chr5.1:13125924-13125943 | MS.gene010616:CDS | 45.0% | |
| CATGGATGCATGAACCATGA+TGG | + | chr5.1:13125348-13125367 | None:intergenic | 45.0% | |
| CCATAAACCCTCACTTAGGA+TGG | - | chr5.1:13125757-13125776 | MS.gene010616:CDS | 45.0% | |
| CCATCCTAAGTGAGGGTTTA+TGG | + | chr5.1:13125760-13125779 | None:intergenic | 45.0% | |
| CTCTGAATCTGTTCTGCACT+TGG | + | chr5.1:13124742-13124761 | None:intergenic | 45.0% | |
| GACCAATCCATCCTAAGTGA+GGG | + | chr5.1:13125767-13125786 | None:intergenic | 45.0% | |
| GCAGACAAAGTAGTACAAGG+TGG | - | chr5.1:13124653-13124672 | MS.gene010616:CDS | 45.0% | |
| GCAGCAGACAAAGTAGTACA+AGG | - | chr5.1:13124650-13124669 | MS.gene010616:CDS | 45.0% | |
| GGATGTAGCAGTAGTCAAGT+TGG | - | chr5.1:13125729-13125748 | MS.gene010616:CDS | 45.0% | |
| TCTGCTGAGATGGTTACTGT+AGG | - | chr5.1:13125145-13125164 | MS.gene010616:intron | 45.0% | |
| TGACCAATCCATCCTAAGTG+AGG | + | chr5.1:13125768-13125787 | None:intergenic | 45.0% | |
| TGGATATGGATCTGTCCCAA+TGG | - | chr5.1:13125183-13125202 | MS.gene010616:intron | 45.0% | |
| TGGTATCAAGCTGAAGATGC+AGG | - | chr5.1:13125987-13126006 | MS.gene010616:CDS | 45.0% | |
| TGGTTCTCGTACTACTTCCT+TGG | - | chr5.1:13126019-13126038 | MS.gene010616:CDS | 45.0% | |
| ! | GTAGGCCAGATTGGTAACTA+TGG | - | chr5.1:13125163-13125182 | MS.gene010616:intron | 45.0% |
| ! | TAGGAGTGCACAATATCAGC+TGG | - | chr5.1:13125708-13125727 | MS.gene010616:intron | 45.0% |
| !! | GCATGAACCATGATGGATCA+TGG | + | chr5.1:13125341-13125360 | None:intergenic | 45.0% |
| !! | AACTTAAATTAAAATTAAAA+TGG | + | chr5.1:13125666-13125685 | None:intergenic | 5.0% |
| GCCTCAACTCTTACGGTTGT+AGG | - | chr5.1:13126048-13126067 | MS.gene010616:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 13124646 | 13126091 | 13124646 | ID=MS.gene010616 |
| chr5.1 | mRNA | 13124646 | 13126091 | 13124646 | ID=MS.gene010616.t1;Parent=MS.gene010616 |
| chr5.1 | exon | 13125722 | 13126091 | 13125722 | ID=MS.gene010616.t1.exon1;Parent=MS.gene010616.t1 |
| chr5.1 | CDS | 13125722 | 13126091 | 13125722 | ID=cds.MS.gene010616.t1;Parent=MS.gene010616.t1 |
| chr5.1 | exon | 13125518 | 13125615 | 13125518 | ID=MS.gene010616.t1.exon2;Parent=MS.gene010616.t1 |
| chr5.1 | CDS | 13125518 | 13125615 | 13125518 | ID=cds.MS.gene010616.t1;Parent=MS.gene010616.t1 |
| chr5.1 | exon | 13124646 | 13125026 | 13124646 | ID=MS.gene010616.t1.exon3;Parent=MS.gene010616.t1 |
| chr5.1 | CDS | 13124646 | 13125026 | 13124646 | ID=cds.MS.gene010616.t1;Parent=MS.gene010616.t1 |
| Gene Sequence |
| Protein sequence |
