AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01062

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01062.t1 MTR_2g014060 85.014 347 35 4 1 341 1 336 1.08e-163 460
MS.gene01062.t1 MTR_2g096740 64.444 90 26 2 12 95 45 134 2.07e-33 125
MS.gene01062.t1 MTR_2g096740 64.444 90 26 2 12 95 60 149 2.51e-33 125
MS.gene01062.t1 MTR_8g027295 64.706 85 29 1 19 102 17 101 3.26e-32 121
MS.gene01062.t1 MTR_8g068210 84.127 63 9 1 26 88 33 94 5.67e-31 120
MS.gene01062.t1 MTR_4g461080 76.471 68 13 2 11 76 14 80 7.77e-31 118
MS.gene01062.t1 MTR_7g024670 55.882 102 34 2 11 111 62 153 1.34e-30 119
MS.gene01062.t1 MTR_2g093220 77.049 61 11 1 22 79 34 94 1.75e-29 115
MS.gene01062.t1 MTR_4g088580 64.706 85 19 2 26 100 56 139 2.09e-29 116
MS.gene01062.t1 MTR_3g091820 73.846 65 14 1 19 80 34 98 3.41e-29 114
MS.gene01062.t1 MTR_3g090430 70.769 65 16 1 17 81 46 107 7.87e-29 114
MS.gene01062.t1 MTR_3g077750 81.818 55 10 0 21 75 57 111 9.54e-29 114
MS.gene01062.t1 MTR_5g031440 86.792 53 7 0 23 75 41 93 1.52e-28 113
MS.gene01062.t1 MTR_7g059400 64.865 74 25 1 6 79 58 130 2.12e-28 113
MS.gene01062.t1 MTR_1g077600 65.217 69 19 1 18 81 31 99 3.46e-28 110
MS.gene01062.t1 MTR_1g077600 65.217 69 19 1 18 81 31 99 4.23e-28 111
MS.gene01062.t1 MTR_4g022370 65.333 75 21 2 10 79 62 136 9.74e-28 111
MS.gene01062.t1 MTR_4g109980 86.000 50 7 0 26 75 41 90 1.04e-27 110
MS.gene01062.t1 MTR_4g063780 40.000 175 66 5 22 181 71 221 1.94e-27 110
MS.gene01062.t1 MTR_1g056810 79.245 53 11 0 27 79 14 66 1.19e-26 107
MS.gene01062.t1 MTR_2g059540 85.417 48 7 0 26 73 32 79 1.60e-26 104
MS.gene01062.t1 MTR_8g079060 62.667 75 23 2 22 91 22 96 3.86e-26 104
MS.gene01062.t1 MTR_8g015840 71.186 59 17 0 26 84 21 79 1.75e-25 102
MS.gene01062.t1 MTR_2g014170 87.500 48 6 0 26 73 46 93 1.96e-25 104
MS.gene01062.t1 MTR_4g089095 74.545 55 13 1 27 81 52 105 6.87e-24 99.8
MS.gene01062.t1 MTR_2g013370 62.857 70 23 2 14 81 33 101 8.57e-24 99.0
MS.gene01062.t1 MTR_4g089095 74.545 55 13 1 27 81 18 71 8.61e-24 99.0
MS.gene01062.t1 MTR_3g435480 66.667 57 19 0 27 83 138 194 1.72e-23 101
MS.gene01062.t1 MTR_7g010950 70.370 54 16 0 27 80 137 190 2.42e-23 100
MS.gene01062.t1 MTR_4g082060 66.667 57 19 0 27 83 124 180 8.08e-23 99.0
MS.gene01062.t1 MTR_7g086780 69.811 53 16 0 26 78 100 152 9.23e-23 98.6
MS.gene01062.t1 MTR_6g012450 52.273 88 33 2 17 95 125 212 1.79e-22 98.2
MS.gene01062.t1 MTR_8g044220 66.667 54 18 0 27 80 120 173 1.95e-22 97.8
MS.gene01062.t1 MTR_2g016030 69.231 52 16 0 27 78 49 100 2.73e-22 92.0
MS.gene01062.t1 MTR_6g027450 64.815 54 19 0 26 79 90 143 4.75e-22 95.5
MS.gene01062.t1 MTR_6g027460 40.310 129 59 3 26 151 97 210 5.15e-22 95.9
MS.gene01062.t1 MTR_5g041420 54.545 77 31 1 4 80 121 193 1.28e-20 91.3
MS.gene01062.t1 MTR_5g041380 63.793 58 21 0 27 84 129 186 9.92e-20 89.4
MS.gene01062.t1 MTR_5g041530 65.385 52 18 0 27 78 142 193 1.23e-19 89.4
MS.gene01062.t1 MTR_5g041400 63.793 58 21 0 27 84 121 178 2.26e-19 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01062.t1 AT5G60850 61.957 92 29 2 18 109 44 129 1.03e-32 124
MS.gene01062.t1 AT5G60200 72.059 68 15 1 22 85 48 115 7.42e-32 120
MS.gene01062.t1 AT5G62940 73.913 69 13 1 7 75 60 123 1.65e-31 122
MS.gene01062.t1 AT2G28510 75.806 62 15 0 23 84 46 107 2.58e-30 117
MS.gene01062.t1 AT5G65590 44.578 166 71 5 15 177 31 178 1.36e-29 115
MS.gene01062.t1 AT1G07640 66.216 74 23 1 8 79 2 75 1.61e-29 114
MS.gene01062.t1 AT1G51700 66.667 75 23 1 26 100 34 106 1.79e-29 112
MS.gene01062.t1 AT1G07640 66.216 74 23 1 8 79 58 131 2.66e-29 115
MS.gene01062.t1 AT1G07640 66.216 74 23 1 8 79 66 139 3.47e-29 115
MS.gene01062.t1 AT3G52440 71.212 66 19 0 27 92 27 92 3.89e-29 112
MS.gene01062.t1 AT3G61850 61.176 85 30 2 19 102 55 137 3.97e-29 114
MS.gene01062.t1 AT3G61850 61.176 85 30 2 19 102 55 137 3.97e-29 114
MS.gene01062.t1 AT3G52440 71.212 66 19 0 27 92 46 111 4.84e-29 113
MS.gene01062.t1 AT3G61850 61.176 85 30 2 19 102 67 149 4.96e-29 114
MS.gene01062.t1 AT3G61850 61.176 85 30 2 19 102 55 137 5.45e-29 114
MS.gene01062.t1 AT3G45610 70.312 64 19 0 23 86 38 101 7.15e-29 112
MS.gene01062.t1 AT3G61850 61.176 85 30 2 19 102 67 149 7.30e-29 114
MS.gene01062.t1 AT2G28810 63.380 71 26 0 6 76 58 128 1.31e-28 113
MS.gene01062.t1 AT2G37590 76.786 56 13 0 26 81 90 145 1.48e-28 113
MS.gene01062.t1 AT2G28810 63.380 71 26 0 6 76 75 145 1.74e-28 113
MS.gene01062.t1 AT4G21050 66.176 68 23 0 22 89 21 88 3.52e-28 109
MS.gene01062.t1 AT3G55370 75.000 60 15 0 27 86 78 137 4.28e-28 112
MS.gene01062.t1 AT3G55370 75.000 60 15 0 27 86 78 137 4.97e-28 112
MS.gene01062.t1 AT5G66940 49.091 110 51 3 27 131 34 143 5.98e-28 109
MS.gene01062.t1 AT3G55370 64.384 73 23 1 17 86 110 182 6.81e-28 112
MS.gene01062.t1 AT1G21340 75.862 58 14 0 27 84 40 97 1.13e-27 109
MS.gene01062.t1 AT1G28310 80.357 56 11 0 26 81 28 83 1.16e-27 110
MS.gene01062.t1 AT1G28310 80.357 56 11 0 26 81 52 107 1.76e-27 110
MS.gene01062.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.91e-27 109
MS.gene01062.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.91e-27 109
MS.gene01062.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.91e-27 109
MS.gene01062.t1 AT4G38000 50.833 120 39 3 26 143 42 143 3.52e-27 107
MS.gene01062.t1 AT5G02460 58.696 92 37 1 26 117 96 186 1.38e-26 109
MS.gene01062.t1 AT3G21270 84.314 51 8 0 26 76 30 80 1.56e-26 104
MS.gene01062.t1 AT4G24060 73.684 57 15 0 23 79 51 107 4.33e-26 107
MS.gene01062.t1 AT3G50410 77.193 57 12 1 27 82 32 88 4.59e-26 104
MS.gene01062.t1 AT2G46590 74.545 55 13 1 19 72 61 115 1.65e-24 102
MS.gene01062.t1 AT1G47655 74.510 51 13 0 23 73 27 77 1.70e-24 99.4
MS.gene01062.t1 AT1G64620 66.129 62 16 1 18 74 37 98 1.84e-24 102
MS.gene01062.t1 AT2G46590 74.545 55 13 1 19 72 73 127 1.94e-24 102
MS.gene01062.t1 AT5G62430 52.500 80 35 1 2 78 28 107 2.85e-23 98.2
MS.gene01062.t1 AT4G21040 62.687 67 25 0 27 93 27 93 4.43e-23 96.3
MS.gene01062.t1 AT3G47500 70.370 54 16 0 27 80 112 165 6.26e-23 99.4
MS.gene01062.t1 AT1G69570 58.209 67 28 0 12 78 119 185 1.32e-22 97.8
MS.gene01062.t1 AT5G39660 57.971 69 25 1 10 78 127 191 2.10e-22 97.8
MS.gene01062.t1 AT5G39660 57.971 69 25 1 10 78 127 191 2.10e-22 97.8
MS.gene01062.t1 AT5G39660 57.971 69 25 1 10 78 127 191 2.10e-22 97.8
MS.gene01062.t1 AT2G34140 57.746 71 27 1 11 78 41 111 4.40e-22 92.0
MS.gene01062.t1 AT1G29160 59.701 67 24 1 15 78 49 115 5.69e-22 91.7
MS.gene01062.t1 AT4G21080 71.154 52 15 0 27 78 27 78 1.16e-21 92.8
MS.gene01062.t1 AT1G26790 65.385 52 18 0 27 78 113 164 1.34e-20 92.0
MS.gene01062.t1 AT4G21030 48.611 72 37 0 22 93 18 89 2.94e-16 76.6

Find 94 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCCTCTGATCAATCTTTA+TGG 0.208599 2.4:-70777802 MS.gene01062:CDS
GGGTAGTGGATCTGCTTCTT+TGG 0.299081 2.4:-70777642 MS.gene01062:CDS
CAACATTGAAACCTTGTAAA+AGG 0.337370 2.4:+70778047 None:intergenic
GGTAGCGGTGATGTTGCTGC+TGG 0.358687 2.4:-70777665 MS.gene01062:CDS
CTTCTTTGGCTCTGAATCAA+TGG 0.377878 2.4:-70777628 MS.gene01062:CDS
GTTGGAGTTGGTGTTGGTCT+TGG 0.379165 2.4:-70778088 MS.gene01062:CDS
TGGTGTTGAGGATGAAGTTT+TGG 0.384562 2.4:+70778360 None:intergenic
TTCTTTCAACTAGGTGGTAA+TGG 0.386741 2.4:-70777968 MS.gene01062:CDS
GTAGCGGTGATGTTGCTGCT+GGG 0.397946 2.4:-70777664 MS.gene01062:CDS
TTCCCTAAGGAATTACTTGA+TGG 0.409259 2.4:+70778340 None:intergenic
TGTTGCGGCGGTGGACGATT+CGG 0.409978 2.4:+70777992 None:intergenic
CTGCTACTTATAATGAAAGT+TGG 0.411866 2.4:-70777856 MS.gene01062:CDS
TGAAAGAATTGTTGCGGCGG+TGG 0.414683 2.4:+70777983 None:intergenic
ACACCATCAAGTAATTCCTT+AGG 0.417503 2.4:-70778343 MS.gene01062:CDS
CCACTATTGATGAAGCTTTG+AGG 0.422498 2.4:+70777833 None:intergenic
TGTGCTGAAGAGTGTGTTGA+TGG 0.423312 2.4:+70778139 None:intergenic
ATCAACACCACTTCAACTAA+TGG 0.426570 2.4:-70777773 MS.gene01062:CDS
AATCAATGGCATGATCTGTC+AGG 0.428092 2.4:-70777614 MS.gene01062:CDS
GTTGGTGTTGGAGTTGGTGT+TGG 0.430153 2.4:-70778094 MS.gene01062:CDS
GTGGCAGTGTTGGCCGAGAC+AGG 0.438645 2.4:+70778311 None:intergenic
GCTGGTGGTAGCCGTGGTGC+TGG 0.442217 2.4:-70777689 MS.gene01062:CDS
CCATCGCAGCCATGGTCAAC+TGG 0.443933 2.4:+70778278 None:intergenic
TATTGGTGGTGGTTGTCGTA+AGG 0.444825 2.4:-70778392 MS.gene01062:CDS
GCAAAACATGCAGAAGGTAC+TGG 0.452080 2.4:-70778444 MS.gene01062:CDS
GAATGATTAAATGCCGCAAA+AGG 0.453309 2.4:+70778175 None:intergenic
GGTAGTCGTGGTGTTGGTGC+TGG 0.457080 2.4:-70777707 MS.gene01062:CDS
CAGAATGTTGGTGTTGGAGT+TGG 0.465123 2.4:-70778100 MS.gene01062:CDS
GTAGCATTAACCATGCTAGA+TGG 0.472281 2.4:+70777899 None:intergenic
ATTGGTGTTGGTGCTGATGC+TGG 0.475218 2.4:-70777731 MS.gene01062:CDS
CACCATCAAGTAATTCCTTA+GGG 0.476186 2.4:-70778342 MS.gene01062:CDS
TTACGACAACCACCACCAAT+AGG 0.480617 2.4:+70778394 None:intergenic
ACATTGAGAAATGTTCCTAT+TGG 0.486939 2.4:-70778409 MS.gene01062:CDS
TAGGGAATTCTTCCCTGTCT+CGG 0.487674 2.4:-70778324 MS.gene01062:CDS
TCCACCACCATTAGTTGAAG+TGG 0.494139 2.4:+70777766 None:intergenic
CCTCAAAGCTTCATCAATAG+TGG 0.497822 2.4:-70777833 MS.gene01062:CDS
AGCCGTGGTGCTGGTGGTAG+CGG 0.499787 2.4:-70777680 MS.gene01062:CDS
CTAGGACACTTCTGAGGTTG+AGG 0.509691 2.4:+70778535 None:intergenic
CTCAACCTCAGAAGTGTCCT+AGG 0.514646 2.4:-70778534 MS.gene01062:CDS
CCGCAACAATTCTTTCAACT+AGG 0.517280 2.4:-70777977 MS.gene01062:CDS
TTTGAACAGTCTCAGAATGT+TGG 0.527603 2.4:-70778112 MS.gene01062:CDS
CCAGTTGACCATGGCTGCGA+TGG 0.534868 2.4:-70778278 MS.gene01062:CDS
ACCACTTCAACTAATGGTGG+TGG 0.543681 2.4:-70777767 MS.gene01062:CDS
TTTGATTCCTCCATCTAGCA+TGG 0.549167 2.4:-70777909 MS.gene01062:CDS
ATTGGTGGTGGTTGTCGTAA+GGG 0.550492 2.4:-70778391 MS.gene01062:CDS
CGCAGCCATGGTCAACTGGT+CGG 0.551583 2.4:+70778282 None:intergenic
TTGAGAAATGTTCCTATTGG+TGG 0.552839 2.4:-70778406 MS.gene01062:CDS
TCGGTTGATTGTGGCAGTGT+TGG 0.553797 2.4:+70778301 None:intergenic
TAGCGGTGATGTTGCTGCTG+GGG 0.555623 2.4:-70777663 MS.gene01062:CDS
GCTGGTGGTAGTCGTGGTGT+TGG 0.556337 2.4:-70777713 MS.gene01062:CDS
AGAAATGTTCCTATTGGTGG+TGG 0.559899 2.4:-70778403 MS.gene01062:CDS
AAGAACGTGGTGATGGTGGA+AGG 0.564755 2.4:-70778591 MS.gene01062:CDS
GTTGTTGTAATAGCAGAACT+TGG 0.576616 2.4:+70778495 None:intergenic
TGCAGAAGGTACTGGACTCA+AGG 0.580923 2.4:-70778436 MS.gene01062:CDS
CGTGGTGATGGTGGAAGGAG+AGG 0.581943 2.4:-70778586 MS.gene01062:CDS
TGGCAGTGTTGGCCGAGACA+GGG 0.584331 2.4:+70778312 None:intergenic
GTCAACTGGTCGGTTGATTG+TGG 0.591951 2.4:+70778292 None:intergenic
ATTCAAACCTCGTGGTTCAG+AGG 0.592802 2.4:+70777931 None:intergenic
GCTCTTGTAAGCTCATCACA+AGG 0.593430 2.4:-70778016 MS.gene01062:CDS
GAGCAAGAACGTGGTGATGG+TGG 0.595958 2.4:-70778595 MS.gene01062:CDS
CAGTCTCAGAATGTTGGTGT+TGG 0.601097 2.4:-70778106 MS.gene01062:CDS
AGCGGTGATGTTGCTGCTGG+GGG 0.601330 2.4:-70777662 MS.gene01062:CDS
GGTGGTAGCCGTGGTGCTGG+TGG 0.612351 2.4:-70777686 MS.gene01062:CDS
CAACAATTCTTTCAACTAGG+TGG 0.614943 2.4:-70777974 MS.gene01062:CDS
AGTCGTGGTGTTGGTGCTGG+TGG 0.615015 2.4:-70777704 MS.gene01062:CDS
ATCAATGGCATGATCTGTCA+GGG 0.615122 2.4:-70777613 MS.gene01062:CDS
GGAATTACTTGATGGTGTTG+AGG 0.615613 2.4:+70778348 None:intergenic
TCTTCTGCAAAACATGCAGA+AGG 0.615692 2.4:-70778450 MS.gene01062:CDS
GTTGGTGCTGGTGGTAGCCG+TGG 0.616357 2.4:-70777695 MS.gene01062:CDS
GGTGGAAATTCTGAAAGGAT+TGG 0.619425 2.4:-70777749 MS.gene01062:CDS
AGAAGAAACGAGGCTGAGAG+AGG 0.619615 2.4:+70778467 None:intergenic
ATGGAGCAAGAACGTGGTGA+TGG 0.620486 2.4:-70778598 MS.gene01062:CDS
CGTGGTTCAGAGGTAAACAT+TGG 0.628309 2.4:+70777941 None:intergenic
GCTGATGCTGGTGGTAGTCG+TGG 0.632658 2.4:-70777719 MS.gene01062:CDS
ATGGTGGTGGAAATTCTGAA+AGG 0.635909 2.4:-70777754 MS.gene01062:CDS
AATTCTGAAAGGATTGGTGT+TGG 0.637664 2.4:-70777743 MS.gene01062:CDS
AACACCACTTCAACTAATGG+TGG 0.642679 2.4:-70777770 MS.gene01062:CDS
TTTCAACTAGGTGGTAATGG+AGG 0.647517 2.4:-70777965 MS.gene01062:CDS
CCTAGTTGAAAGAATTGTTG+CGG 0.647938 2.4:+70777977 None:intergenic
CACCGCTACCACCAGCACCA+CGG 0.647987 2.4:+70777678 None:intergenic
AGACAGGGAAGAATTCCCTA+AGG 0.652666 2.4:+70778327 None:intergenic
GCATTAACCATGCTAGATGG+AGG 0.653768 2.4:+70777902 None:intergenic
TCACACCTAGGACACTTCTG+AGG 0.655155 2.4:+70778529 None:intergenic
GGTGTTGGTGCTGATGCTGG+TGG 0.655433 2.4:-70777728 MS.gene01062:CDS
ATCAACCGACCAGTTGACCA+TGG 0.659300 2.4:-70778287 MS.gene01062:CDS
CATCAACAAGATCACTGAGG+AGG 0.672156 2.4:+70777584 None:intergenic
GGAATCAAATTCAAACCTCG+TGG 0.678570 2.4:+70777923 None:intergenic
TGAGAGATGGAGCAAGAACG+TGG 0.685685 2.4:-70778604 None:intergenic
AGTTGAAAGAATTGTTGCGG+CGG 0.685998 2.4:+70777980 None:intergenic
CTCTTGTAAGCTCATCACAA+GGG 0.687168 2.4:-70778015 MS.gene01062:CDS
ACTCCATAAAGATTGATCAG+AGG 0.693689 2.4:+70777799 None:intergenic
GTGTTGAATGAATCACACCT+AGG 0.703840 2.4:+70778517 None:intergenic
AGAAGGTACTGGACTCAAGG+TGG 0.711298 2.4:-70778433 MS.gene01062:CDS
ATGTTTACCTCTGAACCACG+AGG 0.723992 2.4:-70777938 MS.gene01062:CDS
CAACATCAACAAGATCACTG+AGG 0.799835 2.4:+70777581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ACATTGAGAAATGTTCCTAT+TGG - chr2.4:70777784-70777803 MS.gene01062:CDS 30.0%
CAACATTGAAACCTTGTAAA+AGG + chr2.4:70778149-70778168 None:intergenic 30.0%
! CTGCTACTTATAATGAAAGT+TGG - chr2.4:70778337-70778356 MS.gene01062:CDS 30.0%
! TCAAATTTGAGCCTTTTACA+AGG - chr2.4:70778135-70778154 MS.gene01062:CDS 30.0%
ACACCATCAAGTAATTCCTT+AGG - chr2.4:70777850-70777869 MS.gene01062:CDS 35.0%
ACTCCATAAAGATTGATCAG+AGG + chr2.4:70778397-70778416 None:intergenic 35.0%
ATCAACACCACTTCAACTAA+TGG - chr2.4:70778420-70778439 MS.gene01062:CDS 35.0%
CAACAATTCTTTCAACTAGG+TGG - chr2.4:70778219-70778238 MS.gene01062:CDS 35.0%
CACCATCAAGTAATTCCTTA+GGG - chr2.4:70777851-70777870 MS.gene01062:CDS 35.0%
CCTAGTTGAAAGAATTGTTG+CGG + chr2.4:70778219-70778238 None:intergenic 35.0%
GAATGATTAAATGCCGCAAA+AGG + chr2.4:70778021-70778040 None:intergenic 35.0%
GTTGTTGTAATAGCAGAACT+TGG + chr2.4:70777701-70777720 None:intergenic 35.0%
TTCCCTAAGGAATTACTTGA+TGG + chr2.4:70777856-70777875 None:intergenic 35.0%
TTCTTTCAACTAGGTGGTAA+TGG - chr2.4:70778225-70778244 MS.gene01062:CDS 35.0%
TTGAGAAATGTTCCTATTGG+TGG - chr2.4:70777787-70777806 MS.gene01062:CDS 35.0%
TTGATAAAAAGAAGCAGCAG+AGG + chr2.4:70777974-70777993 None:intergenic 35.0%
TTTGAACAGTCTCAGAATGT+TGG - chr2.4:70778081-70778100 MS.gene01062:CDS 35.0%
! AATTCTGAAAGGATTGGTGT+TGG - chr2.4:70778450-70778469 MS.gene01062:CDS 35.0%
!! TCTGCTGCTTCTTTTTATCA+AGG - chr2.4:70777973-70777992 MS.gene01062:CDS 35.0%
!!! TTTTATCAAGGAGGTGTTGT+TGG - chr2.4:70777985-70778004 MS.gene01062:CDS 35.0%
AACACCACTTCAACTAATGG+TGG - chr2.4:70778423-70778442 MS.gene01062:CDS 40.0%
AATCAATGGCATGATCTGTC+AGG - chr2.4:70778579-70778598 MS.gene01062:CDS 40.0%
AGAAATGTTCCTATTGGTGG+TGG - chr2.4:70777790-70777809 MS.gene01062:CDS 40.0%
AGTTGAAAGAATTGTTGCGG+CGG + chr2.4:70778216-70778235 None:intergenic 40.0%
ATCAATGGCATGATCTGTCA+GGG - chr2.4:70778580-70778599 MS.gene01062:CDS 40.0%
CCACTATTGATGAAGCTTTG+AGG + chr2.4:70778363-70778382 None:intergenic 40.0%
CCGCAACAATTCTTTCAACT+AGG - chr2.4:70778216-70778235 MS.gene01062:CDS 40.0%
CCTCAAAGCTTCATCAATAG+TGG - chr2.4:70778360-70778379 MS.gene01062:CDS 40.0%
CTCTTGTAAGCTCATCACAA+GGG - chr2.4:70778178-70778197 MS.gene01062:CDS 40.0%
GAGCCTCTGATCAATCTTTA+TGG - chr2.4:70778391-70778410 MS.gene01062:CDS 40.0%
GGAATCAAATTCAAACCTCG+TGG + chr2.4:70778273-70778292 None:intergenic 40.0%
GTAGCATTAACCATGCTAGA+TGG + chr2.4:70778297-70778316 None:intergenic 40.0%
GTGTTGAATGAATCACACCT+AGG + chr2.4:70777679-70777698 None:intergenic 40.0%
TCTTCTGCAAAACATGCAGA+AGG - chr2.4:70777743-70777762 MS.gene01062:CDS 40.0%
TTTGATTCCTCCATCTAGCA+TGG - chr2.4:70778284-70778303 MS.gene01062:CDS 40.0%
! CATGTTTTGCAGAAGAAACG+AGG + chr2.4:70777739-70777758 None:intergenic 40.0%
! GCTGCTTCTTTTTATCAAGG+AGG - chr2.4:70777976-70777995 MS.gene01062:CDS 40.0%
! GGTGGAAATTCTGAAAGGAT+TGG - chr2.4:70778444-70778463 MS.gene01062:CDS 40.0%
!! ATGGTGGTGGAAATTCTGAA+AGG - chr2.4:70778439-70778458 MS.gene01062:CDS 40.0%
!! CTTCTTTGGCTCTGAATCAA+TGG - chr2.4:70778565-70778584 MS.gene01062:CDS 40.0%
!! GGAATTACTTGATGGTGTTG+AGG + chr2.4:70777848-70777867 None:intergenic 40.0%
!! TGGTGTTGAGGATGAAGTTT+TGG + chr2.4:70777836-70777855 None:intergenic 40.0%
!! TTTCAACTAGGTGGTAATGG+AGG - chr2.4:70778228-70778247 MS.gene01062:CDS 40.0%
ACCACTTCAACTAATGGTGG+TGG - chr2.4:70778426-70778445 MS.gene01062:CDS 45.0%
AGACAGGGAAGAATTCCCTA+AGG + chr2.4:70777869-70777888 None:intergenic 45.0%
ATGTTTACCTCTGAACCACG+AGG - chr2.4:70778255-70778274 MS.gene01062:CDS 45.0%
ATTCAAACCTCGTGGTTCAG+AGG + chr2.4:70778265-70778284 None:intergenic 45.0%
CAGTCTCAGAATGTTGGTGT+TGG - chr2.4:70778087-70778106 MS.gene01062:CDS 45.0%
CGTGGTTCAGAGGTAAACAT+TGG + chr2.4:70778255-70778274 None:intergenic 45.0%
GCATTAACCATGCTAGATGG+AGG + chr2.4:70778294-70778313 None:intergenic 45.0%
GCTCTTGTAAGCTCATCACA+AGG - chr2.4:70778177-70778196 MS.gene01062:CDS 45.0%
TAGGGAATTCTTCCCTGTCT+CGG - chr2.4:70777869-70777888 MS.gene01062:CDS 45.0%
TCCACCACCATTAGTTGAAG+TGG + chr2.4:70778430-70778449 None:intergenic 45.0%
TTACGACAACCACCACCAAT+AGG + chr2.4:70777802-70777821 None:intergenic 45.0%
! GCAAAACATGCAGAAGGTAC+TGG - chr2.4:70777749-70777768 MS.gene01062:CDS 45.0%
! TGGTTACATGTCGCCTTTTG+CGG - chr2.4:70778005-70778024 MS.gene01062:CDS 45.0%
! TGTGCTGAAGAGTGTGTTGA+TGG + chr2.4:70778057-70778076 None:intergenic 45.0%
!! ATTGGTGGTGGTTGTCGTAA+GGG - chr2.4:70777802-70777821 MS.gene01062:CDS 45.0%
!! CAGAATGTTGGTGTTGGAGT+TGG - chr2.4:70778093-70778112 MS.gene01062:CDS 45.0%
!! TATTGGTGGTGGTTGTCGTA+AGG - chr2.4:70777801-70777820 MS.gene01062:CDS 45.0%
AGAAGAAACGAGGCTGAGAG+AGG + chr2.4:70777729-70777748 None:intergenic 50.0%
ATCAACCGACCAGTTGACCA+TGG - chr2.4:70777906-70777925 MS.gene01062:CDS 50.0%
ATGGAGCAAGAACGTGGTGA+TGG - chr2.4:70777595-70777614 MS.gene01062:CDS 50.0%
GTCAACTGGTCGGTTGATTG+TGG + chr2.4:70777904-70777923 None:intergenic 50.0%
TCACACCTAGGACACTTCTG+AGG + chr2.4:70777667-70777686 None:intergenic 50.0%
TCGGTTGATTGTGGCAGTGT+TGG + chr2.4:70777895-70777914 None:intergenic 50.0%
TGAAAGAATTGTTGCGGCGG+TGG + chr2.4:70778213-70778232 None:intergenic 50.0%
!! AAGAACGTGGTGATGGTGGA+AGG - chr2.4:70777602-70777621 MS.gene01062:CDS 50.0%
!! AGAAGGTACTGGACTCAAGG+TGG - chr2.4:70777760-70777779 MS.gene01062:CDS 50.0%
!! ATTGGTGTTGGTGCTGATGC+TGG - chr2.4:70778462-70778481 MS.gene01062:CDS 50.0%
!! CTAGGACACTTCTGAGGTTG+AGG + chr2.4:70777661-70777680 None:intergenic 50.0%
!! CTCAACCTCAGAAGTGTCCT+AGG - chr2.4:70777659-70777678 MS.gene01062:CDS 50.0%
!! GGGTAGTGGATCTGCTTCTT+TGG - chr2.4:70778551-70778570 MS.gene01062:CDS 50.0%
!! GTTGGAGTTGGTGTTGGTCT+TGG - chr2.4:70778105-70778124 MS.gene01062:CDS 50.0%
!! GTTGGTGTTGGAGTTGGTGT+TGG - chr2.4:70778099-70778118 MS.gene01062:CDS 50.0%
!! TGCAGAAGGTACTGGACTCA+AGG - chr2.4:70777757-70777776 MS.gene01062:CDS 50.0%
!!! GTTTTTAGCCATCGCAGCCA+TGG + chr2.4:70777926-70777945 None:intergenic 50.0%
GTAGCGGTGATGTTGCTGCT+GGG - chr2.4:70778529-70778548 MS.gene01062:CDS 55.0%
TAGCGGTGATGTTGCTGCTG+GGG - chr2.4:70778530-70778549 MS.gene01062:CDS 55.0%
!! GAGCAAGAACGTGGTGATGG+TGG - chr2.4:70777598-70777617 MS.gene01062:CDS 55.0%
AGCGGTGATGTTGCTGCTGG+GGG - chr2.4:70778531-70778550 MS.gene01062:CDS 60.0%
CCAGTTGACCATGGCTGCGA+TGG - chr2.4:70777915-70777934 MS.gene01062:CDS 60.0%
CCATCGCAGCCATGGTCAAC+TGG + chr2.4:70777918-70777937 None:intergenic 60.0%
CGCAGCCATGGTCAACTGGT+CGG + chr2.4:70777914-70777933 None:intergenic 60.0%
GATGTTGCTGCTGGGGGTAG+TGG - chr2.4:70778537-70778556 MS.gene01062:CDS 60.0%
GCTGATGCTGGTGGTAGTCG+TGG - chr2.4:70778474-70778493 MS.gene01062:CDS 60.0%
GCTGGTGGTAGTCGTGGTGT+TGG - chr2.4:70778480-70778499 MS.gene01062:CDS 60.0%
TGTTGCGGCGGTGGACGATT+CGG + chr2.4:70778204-70778223 None:intergenic 60.0%
! GGTAGCGGTGATGTTGCTGC+TGG - chr2.4:70778528-70778547 MS.gene01062:CDS 60.0%
!! AGTCGTGGTGTTGGTGCTGG+TGG - chr2.4:70778489-70778508 MS.gene01062:CDS 60.0%
!! CGTGGTGATGGTGGAAGGAG+AGG - chr2.4:70777607-70777626 MS.gene01062:CDS 60.0%
!! GGTAGTCGTGGTGTTGGTGC+TGG - chr2.4:70778486-70778505 MS.gene01062:CDS 60.0%
!! GGTGTTGGTGCTGATGCTGG+TGG - chr2.4:70778465-70778484 MS.gene01062:CDS 60.0%
!! TGGCAGTGTTGGCCGAGACA+GGG + chr2.4:70777884-70777903 None:intergenic 60.0%
CACCGCTACCACCAGCACCA+CGG + chr2.4:70778518-70778537 None:intergenic 65.0%
!! AGCCGTGGTGCTGGTGGTAG+CGG - chr2.4:70778513-70778532 MS.gene01062:CDS 65.0%
!! GTGGCAGTGTTGGCCGAGAC+AGG + chr2.4:70777885-70777904 None:intergenic 65.0%
!! GTTGGTGCTGGTGGTAGCCG+TGG - chr2.4:70778498-70778517 MS.gene01062:CDS 65.0%
GCTGGTGGTAGCCGTGGTGC+TGG - chr2.4:70778504-70778523 MS.gene01062:CDS 70.0%
! GGTGGTAGCCGTGGTGCTGG+TGG - chr2.4:70778507-70778526 MS.gene01062:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 70777595 70778620 70777595 ID=MS.gene01062
chr2.4 mRNA 70777595 70778620 70777595 ID=MS.gene01062.t1;Parent=MS.gene01062
chr2.4 exon 70777595 70778620 70777595 ID=MS.gene01062.t1.exon1;Parent=MS.gene01062.t1
chr2.4 CDS 70777595 70778620 70777595 ID=cds.MS.gene01062.t1;Parent=MS.gene01062.t1
Gene Sequence

>MS.gene01062

ATGGAGCAAGAACGTGGTGATGGTGGAAGGAGAGGTGAGATGAGTAAGCATGTTCAAGCTCATCCTCAACCTCAGAAGTGTCCTAGGTGTGATTCATTCAACACCAAGTTCTGCTATTACAACAACTATAGCCTCTCTCAGCCTCGTTTCTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGAACATTGAGAAATGTTCCTATTGGTGGTGGTTGTCGTAAGGGAAAGAAATCCAAAACTTCATCCTCAACACCATCAAGTAATTCCTTAGGGAATTCTTCCCTGTCTCGGCCAACACTGCCACAATCAACCGACCAGTTGACCATGGCTGCGATGGCTAAAAACTCTTCTTCTGTTTTTGCTTCATTTTCCTCTGCTGCTTCTTTTTATCAAGGAGGTGTTGTTGGTTACATGTCGCCTTTTGCGGCATTTAATCATTCGTTGAATTCGAATCCATCAACACACTCTTCAGCACACACTTTTGAACAGTCTCAGAATGTTGGTGTTGGAGTTGGTGTTGGTCTTGGTTCTTCTTCAAATTTGAGCCTTTTACAAGGTTTCAATGTTGCTGCTGCTGCTCTTGTAAGCTCATCACAAGGGCCGAATCGTCCACCGCCGCAACAATTCTTTCAACTAGGTGGTAATGGAGGACCAATGTTTACCTCTGAACCACGAGGTTTGAATTTGATTCCTCCATCTAGCATGGTTAATGCTACTACTTCTGTTGCTACTGATTCTGCTACTTATAATGAAAGTTGGCCTCAAAGCTTCATCAATAGTGGTAACAACAGAGCCTCTGATCAATCTTTATGGAGTACTATCAACACCACTTCAACTAATGGTGGTGGAAATTCTGAAAGGATTGGTGTTGGTGCTGATGCTGGTGGTAGTCGTGGTGTTGGTGCTGGTGGTAGCCGTGGTGCTGGTGGTAGCGGTGATGTTGCTGCTGGGGGTAGTGGATCTGCTTCTTTGGCTCTGAATCAATGGCATGATCTGTCAGGGTTCAATCCTCCTCAGTGA
Protein sequence

>MS.gene01062.t1

MEQERGDGGRRGEMSKHVQAHPQPQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPIGGGCRKGKKSKTSSSTPSSNSLGNSSLSRPTLPQSTDQLTMAAMAKNSSSVFASFSSAASFYQGGVVGYMSPFAAFNHSLNSNPSTHSSAHTFEQSQNVGVGVGVGLGSSSNLSLLQGFNVAAAALVSSSQGPNRPPPQQFFQLGGNGGPMFTSEPRGLNLIPPSSMVNATTSVATDSATYNESWPQSFINSGNNRASDQSLWSTINTTSTNGGGNSERIGVGADAGGSRGVGAGGSRGAGGSGDVAAGGSGSASLALNQWHDLSGFNPPQ