Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010774.t1 | RHN45460.1 | 98.8 | 492 | 6 | 0 | 1 | 492 | 1 | 492 | 1.60E-244 | 855.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010774.t1 | Q8GZ38 | 48.4 | 494 | 154 | 17 | 1 | 490 | 1 | 397 | 7.3e-65 | 249.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010774.t1 | A0A396GWP6 | 98.8 | 492 | 6 | 0 | 1 | 492 | 1 | 492 | 1.1e-244 | 855.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene010774.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010774.t1 | MTR_7g039110 | 99.104 | 335 | 3 | 0 | 1 | 335 | 1 | 335 | 0.0 | 691 |
MS.gene010774.t1 | MTR_1g084980 | 51.351 | 111 | 50 | 2 | 268 | 375 | 434 | 543 | 2.57e-24 | 107 |
MS.gene010774.t1 | MTR_7g099540 | 49.167 | 120 | 41 | 2 | 284 | 401 | 237 | 338 | 1.45e-23 | 103 |
MS.gene010774.t1 | MTR_1g069155 | 59.341 | 91 | 31 | 2 | 284 | 371 | 301 | 388 | 4.55e-23 | 102 |
MS.gene010774.t1 | MTR_1g019240 | 70.968 | 62 | 18 | 0 | 298 | 359 | 86 | 147 | 7.40e-23 | 98.2 |
MS.gene010774.t1 | MTR_3g449770 | 39.535 | 172 | 68 | 5 | 263 | 433 | 278 | 414 | 1.97e-22 | 100 |
MS.gene010774.t1 | MTR_7g099540 | 58.889 | 90 | 32 | 2 | 284 | 371 | 237 | 323 | 2.23e-22 | 100 |
MS.gene010774.t1 | MTR_5g017040 | 51.064 | 94 | 39 | 2 | 307 | 394 | 115 | 207 | 1.46e-18 | 87.4 |
MS.gene010774.t1 | MTR_7g111320 | 34.010 | 197 | 115 | 7 | 260 | 451 | 396 | 582 | 6.69e-18 | 87.4 |
MS.gene010774.t1 | MTR_7g110810 | 33.133 | 166 | 87 | 4 | 283 | 431 | 181 | 339 | 5.23e-16 | 80.1 |
MS.gene010774.t1 | MTR_4g131160 | 53.030 | 66 | 31 | 0 | 294 | 359 | 193 | 258 | 2.69e-15 | 78.2 |
MS.gene010774.t1 | MTR_4g131160 | 53.030 | 66 | 31 | 0 | 294 | 359 | 196 | 261 | 2.82e-15 | 78.2 |
MS.gene010774.t1 | MTR_1g080890 | 48.438 | 64 | 33 | 0 | 297 | 360 | 193 | 256 | 7.66e-13 | 70.1 |
MS.gene010774.t1 | MTR_4g070320 | 31.527 | 203 | 97 | 10 | 280 | 444 | 116 | 314 | 1.07e-12 | 69.7 |
MS.gene010774.t1 | MTR_5g048860 | 32.500 | 160 | 69 | 6 | 253 | 384 | 325 | 473 | 2.60e-12 | 69.3 |
MS.gene010774.t1 | MTR_3g116770 | 34.014 | 147 | 75 | 5 | 297 | 438 | 191 | 320 | 6.31e-12 | 67.8 |
MS.gene010774.t1 | MTR_3g116770 | 34.014 | 147 | 75 | 5 | 297 | 438 | 191 | 320 | 6.80e-12 | 67.4 |
MS.gene010774.t1 | MTR_1g084980 | 43.373 | 83 | 46 | 1 | 268 | 350 | 434 | 515 | 1.28e-11 | 67.4 |
MS.gene010774.t1 | MTR_1g017350 | 36.842 | 95 | 58 | 2 | 297 | 390 | 260 | 353 | 2.45e-11 | 65.9 |
MS.gene010774.t1 | MTR_1g017350 | 36.842 | 95 | 58 | 2 | 297 | 390 | 260 | 353 | 2.51e-11 | 65.9 |
MS.gene010774.t1 | MTR_1g017350 | 48.438 | 64 | 32 | 1 | 297 | 359 | 260 | 323 | 8.64e-11 | 64.3 |
MS.gene010774.t1 | MTR_1g017350 | 48.438 | 64 | 32 | 1 | 297 | 359 | 260 | 323 | 9.59e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010774.t1 | AT4G00050 | 45.549 | 483 | 160 | 18 | 1 | 478 | 1 | 385 | 7.75e-102 | 311 |
MS.gene010774.t1 | AT4G00050 | 44.468 | 479 | 161 | 19 | 1 | 472 | 1 | 381 | 6.53e-94 | 290 |
MS.gene010774.t1 | AT4G00050 | 48.986 | 345 | 109 | 13 | 139 | 478 | 1 | 283 | 1.89e-76 | 242 |
MS.gene010774.t1 | AT2G20180 | 29.621 | 449 | 231 | 16 | 1 | 433 | 1 | 380 | 1.19e-27 | 115 |
MS.gene010774.t1 | AT2G20180 | 29.621 | 449 | 231 | 16 | 1 | 433 | 1 | 380 | 1.19e-27 | 115 |
MS.gene010774.t1 | AT2G20180 | 29.621 | 449 | 231 | 16 | 1 | 433 | 1 | 380 | 1.19e-27 | 115 |
MS.gene010774.t1 | AT2G20180 | 29.621 | 449 | 231 | 16 | 1 | 433 | 1 | 380 | 1.19e-27 | 115 |
MS.gene010774.t1 | AT2G20180 | 38.222 | 225 | 114 | 7 | 173 | 390 | 89 | 295 | 5.75e-26 | 110 |
MS.gene010774.t1 | AT2G20180 | 38.222 | 225 | 114 | 7 | 173 | 390 | 89 | 295 | 5.75e-26 | 110 |
MS.gene010774.t1 | AT2G20180 | 38.222 | 225 | 114 | 7 | 173 | 390 | 89 | 295 | 5.75e-26 | 110 |
MS.gene010774.t1 | AT2G20180 | 29.947 | 374 | 211 | 13 | 1 | 358 | 1 | 339 | 7.18e-26 | 108 |
MS.gene010774.t1 | AT4G28790 | 33.632 | 223 | 127 | 6 | 168 | 389 | 159 | 361 | 1.73e-25 | 108 |
MS.gene010774.t1 | AT4G36930 | 56.471 | 85 | 34 | 1 | 303 | 384 | 197 | 281 | 1.22e-22 | 99.8 |
MS.gene010774.t1 | AT1G09530 | 45.082 | 122 | 57 | 1 | 270 | 391 | 310 | 421 | 1.51e-22 | 101 |
MS.gene010774.t1 | AT1G09530 | 45.082 | 122 | 57 | 1 | 270 | 391 | 310 | 421 | 1.51e-22 | 101 |
MS.gene010774.t1 | AT1G09530 | 45.082 | 122 | 57 | 1 | 270 | 391 | 310 | 421 | 1.51e-22 | 101 |
MS.gene010774.t1 | AT1G09530 | 45.082 | 122 | 57 | 1 | 270 | 391 | 310 | 421 | 1.51e-22 | 101 |
MS.gene010774.t1 | AT1G09530 | 45.082 | 122 | 57 | 1 | 270 | 391 | 310 | 421 | 1.51e-22 | 101 |
MS.gene010774.t1 | AT1G09530 | 45.082 | 122 | 57 | 1 | 270 | 391 | 310 | 421 | 1.51e-22 | 101 |
MS.gene010774.t1 | AT5G67110 | 57.471 | 87 | 34 | 1 | 287 | 370 | 77 | 163 | 1.66e-22 | 95.9 |
MS.gene010774.t1 | AT4G28790 | 33.333 | 189 | 109 | 4 | 168 | 356 | 159 | 330 | 2.71e-21 | 95.5 |
MS.gene010774.t1 | AT5G61270 | 36.232 | 207 | 126 | 4 | 281 | 484 | 56 | 259 | 1.94e-20 | 91.7 |
MS.gene010774.t1 | AT5G61270 | 36.232 | 207 | 126 | 4 | 281 | 484 | 56 | 259 | 1.94e-20 | 91.7 |
MS.gene010774.t1 | AT5G61270 | 36.232 | 207 | 126 | 4 | 281 | 484 | 144 | 347 | 3.29e-20 | 92.4 |
MS.gene010774.t1 | AT2G46970 | 35.838 | 173 | 94 | 6 | 267 | 431 | 162 | 325 | 4.43e-20 | 92.4 |
MS.gene010774.t1 | AT2G46970 | 35.838 | 173 | 94 | 6 | 267 | 431 | 171 | 334 | 6.67e-20 | 92.0 |
MS.gene010774.t1 | AT2G46970 | 35.838 | 173 | 94 | 6 | 267 | 431 | 193 | 356 | 7.32e-20 | 92.0 |
MS.gene010774.t1 | AT4G28815 | 58.209 | 67 | 28 | 0 | 291 | 357 | 62 | 128 | 1.48e-19 | 88.2 |
MS.gene010774.t1 | AT4G28815 | 58.209 | 67 | 28 | 0 | 291 | 357 | 138 | 204 | 5.48e-19 | 88.2 |
MS.gene010774.t1 | AT4G28800 | 38.095 | 168 | 68 | 5 | 280 | 446 | 236 | 368 | 1.83e-18 | 88.2 |
MS.gene010774.t1 | AT3G62090 | 40.136 | 147 | 76 | 5 | 293 | 431 | 161 | 303 | 5.39e-18 | 85.9 |
MS.gene010774.t1 | AT3G62090 | 40.136 | 147 | 76 | 5 | 293 | 431 | 178 | 320 | 5.90e-18 | 85.9 |
MS.gene010774.t1 | AT4G28800 | 36.905 | 168 | 64 | 5 | 280 | 446 | 248 | 374 | 1.67e-17 | 85.5 |
MS.gene010774.t1 | AT4G28811 | 30.405 | 296 | 171 | 9 | 194 | 488 | 265 | 526 | 8.24e-17 | 83.6 |
MS.gene010774.t1 | AT5G58010 | 52.941 | 68 | 32 | 0 | 293 | 360 | 95 | 162 | 3.64e-16 | 79.7 |
MS.gene010774.t1 | AT2G24260 | 50.746 | 67 | 33 | 0 | 294 | 360 | 32 | 98 | 6.80e-16 | 77.8 |
MS.gene010774.t1 | AT4G30980 | 53.731 | 67 | 31 | 0 | 294 | 360 | 127 | 193 | 7.73e-16 | 79.0 |
MS.gene010774.t1 | AT2G24260 | 50.746 | 67 | 33 | 0 | 294 | 360 | 135 | 201 | 1.53e-15 | 78.6 |
MS.gene010774.t1 | AT3G59060 | 42.748 | 131 | 56 | 2 | 269 | 380 | 222 | 352 | 1.86e-15 | 79.0 |
MS.gene010774.t1 | AT3G59060 | 42.748 | 131 | 56 | 2 | 269 | 380 | 222 | 352 | 1.88e-15 | 79.0 |
MS.gene010774.t1 | AT3G59060 | 42.748 | 131 | 56 | 2 | 269 | 380 | 222 | 352 | 1.88e-15 | 79.0 |
MS.gene010774.t1 | AT3G59060 | 42.748 | 131 | 56 | 2 | 269 | 380 | 222 | 352 | 1.88e-15 | 79.0 |
MS.gene010774.t1 | AT4G30980 | 53.731 | 67 | 31 | 0 | 294 | 360 | 175 | 241 | 2.14e-15 | 78.2 |
MS.gene010774.t1 | AT2G43010 | 46.078 | 102 | 48 | 1 | 298 | 392 | 252 | 353 | 2.69e-15 | 78.2 |
MS.gene010774.t1 | AT2G43010 | 46.078 | 102 | 48 | 1 | 298 | 392 | 252 | 353 | 2.94e-15 | 78.2 |
MS.gene010774.t1 | AT2G43010 | 46.078 | 102 | 48 | 1 | 298 | 392 | 252 | 353 | 3.46e-15 | 78.2 |
MS.gene010774.t1 | AT2G43010 | 46.078 | 102 | 48 | 1 | 298 | 392 | 259 | 360 | 4.51e-15 | 77.8 |
MS.gene010774.t1 | AT2G43010 | 46.078 | 102 | 48 | 1 | 298 | 392 | 294 | 395 | 6.63e-15 | 77.4 |
MS.gene010774.t1 | AT1G02340 | 40.741 | 81 | 47 | 1 | 311 | 390 | 134 | 214 | 1.74e-11 | 65.5 |
MS.gene010774.t1 | AT1G02340 | 33.871 | 124 | 59 | 3 | 311 | 433 | 141 | 242 | 1.99e-11 | 65.5 |
MS.gene010774.t1 | AT5G50915 | 50.000 | 64 | 31 | 1 | 297 | 359 | 136 | 199 | 3.47e-11 | 64.3 |
MS.gene010774.t1 | AT5G50915 | 50.000 | 64 | 31 | 1 | 297 | 359 | 136 | 199 | 3.47e-11 | 64.3 |
MS.gene010774.t1 | AT1G27740 | 55.319 | 47 | 21 | 0 | 313 | 359 | 183 | 229 | 4.05e-11 | 63.9 |
MS.gene010774.t1 | AT5G50915 | 50.000 | 64 | 31 | 1 | 297 | 359 | 136 | 199 | 4.21e-11 | 64.3 |
MS.gene010774.t1 | AT5G50915 | 50.000 | 64 | 31 | 1 | 297 | 359 | 136 | 199 | 4.21e-11 | 64.3 |
MS.gene010774.t1 | AT2G14760 | 47.619 | 63 | 31 | 1 | 299 | 359 | 237 | 299 | 4.86e-11 | 64.3 |
MS.gene010774.t1 | AT1G68920 | 28.505 | 214 | 123 | 7 | 167 | 359 | 161 | 365 | 5.86e-11 | 65.1 |
MS.gene010774.t1 | AT4G33880 | 47.619 | 63 | 31 | 1 | 299 | 359 | 266 | 328 | 7.80e-11 | 63.9 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAATACCTTGCTGGAATT+TGG | 0.116447 | 7.2:-56409408 | None:intergenic |
CTCGCCGGTGGTGGTGTTTA+TGG | 0.189054 | 7.2:+56407462 | MS.gene010774:CDS |
GATACGTACGATAGGGAATT+TGG | 0.237818 | 7.2:+56407840 | MS.gene010774:CDS |
TTCAACTTCAATAGCTTCTA+TGG | 0.248590 | 7.2:+56407878 | MS.gene010774:CDS |
CTAATACCTTGCTGGAATTT+GGG | 0.269938 | 7.2:-56409407 | None:intergenic |
ATCCAACATTGAAGCTTTAT+CGG | 0.300002 | 7.2:-56412812 | None:intergenic |
AATCATCAGTGTCCACTAAA+AGG | 0.320838 | 7.2:+56409196 | MS.gene010774:CDS |
TGGAGGACGGGAGGCATTCC+AGG | 0.322141 | 7.2:-56413057 | None:intergenic |
AATCCAATGGGCATGGGAAT+GGG | 0.328179 | 7.2:+56412952 | MS.gene010774:CDS |
GGGTCAGCCATCCCGGCTGC+TGG | 0.329557 | 7.2:-56413144 | None:intergenic |
TTTGCAATGTCTTCATTCTC+TGG | 0.342653 | 7.2:-56409377 | None:intergenic |
AGGGTTAGTTGAATTAGAAT+TGG | 0.352630 | 7.2:-56406891 | None:intergenic |
GGATGTTTATGCGGCACTTT+CGG | 0.352815 | 7.2:-56407321 | None:intergenic |
GCAGAATTGACATGGGAAAA+TGG | 0.354104 | 7.2:+56407270 | MS.gene010774:CDS |
CAAATTTCTATGCATGGCTT+AGG | 0.354297 | 7.2:+56407294 | MS.gene010774:CDS |
CGATGGGAATGGCCGGGATG+GGG | 0.360969 | 7.2:+56412977 | MS.gene010774:CDS |
CATGATCCAATCCCTGATCT+AGG | 0.366172 | 7.2:-56407630 | None:intergenic |
GGAGGGTGGCACACGTGGCG+GGG | 0.367653 | 7.2:+56407751 | MS.gene010774:CDS |
GGGAGGGTGGCACACGTGGC+GGG | 0.375369 | 7.2:+56407750 | MS.gene010774:CDS |
CCGATGGGAATGGCCGGGAT+GGG | 0.380247 | 7.2:+56412976 | MS.gene010774:CDS |
TATATTCTCTAATACCTTGC+TGG | 0.384413 | 7.2:-56409415 | None:intergenic |
GGGCATGGGAATGGGGCCGA+TGG | 0.386893 | 7.2:+56412960 | MS.gene010774:CDS |
CATGCCGTTGTTGGCGGCTG+TGG | 0.396238 | 7.2:-56407538 | None:intergenic |
TGTCTGCTCCTTAGTAGTAT+TGG | 0.406917 | 7.2:-56407586 | None:intergenic |
CGATGGCTGCAGCACGTTGT+GGG | 0.407878 | 7.2:-56407509 | None:intergenic |
TGGGAGGGTGGCACACGTGG+CGG | 0.410223 | 7.2:+56407749 | MS.gene010774:CDS |
ACGTATCAAGTGTCACTTGC+TGG | 0.412295 | 7.2:-56407824 | None:intergenic |
GTTGTTCATTTACCTGTGTT+TGG | 0.414439 | 7.2:-56413188 | None:intergenic |
TTGCACTGCCACTCATACTT+TGG | 0.415885 | 7.2:-56407785 | None:intergenic |
TATGGGAATGGGCATGGGAA+TGG | 0.417658 | 7.2:+56413005 | MS.gene010774:CDS |
ATGAGTGGCAGTGCAACCTT+TGG | 0.418201 | 7.2:+56407792 | MS.gene010774:CDS |
GGCCGGGATGGGGATGGGTA+TGG | 0.418753 | 7.2:+56412987 | MS.gene010774:CDS |
GCCGATGGGAATGGCCGGGA+TGG | 0.418797 | 7.2:+56412975 | MS.gene010774:CDS |
GATGGGGATGGGTATGGGAA+TGG | 0.419440 | 7.2:+56412993 | MS.gene010774:CDS |
GTGGCACACGTGGCGGGGAG+CGG | 0.420441 | 7.2:+56407756 | MS.gene010774:CDS |
CAATTCTTTGAACCTGGTGC+TGG | 0.423938 | 7.2:-56414150 | None:intergenic |
AGGGATGTTAGCGCGATTCA+TGG | 0.424625 | 7.2:-56413037 | None:intergenic |
GGCGGCTGTGGCAGCAGCGA+TGG | 0.424921 | 7.2:-56407526 | None:intergenic |
GGTGCACTGCTTCTCAGAGC+TGG | 0.425303 | 7.2:-56407907 | None:intergenic |
ATGGGGCCGATGGGAATGGC+CGG | 0.428063 | 7.2:+56412970 | MS.gene010774:CDS |
CCTCAGCGGCGAAGCGTGGG+AGG | 0.432707 | 7.2:+56407733 | MS.gene010774:CDS |
GAATCCAATGGGCATGGGAA+TGG | 0.435727 | 7.2:+56412951 | MS.gene010774:CDS |
ATGGGGATGGGTATGGGAAT+GGG | 0.437973 | 7.2:+56412994 | MS.gene010774:CDS |
ACTGATCTTGGAGGTGGTTG+TGG | 0.440551 | 7.2:-56406857 | None:intergenic |
GCTGCCTCAGCGGCGAAGCG+TGG | 0.440563 | 7.2:+56407729 | MS.gene010774:CDS |
GTCATCTACGGTGGTTGTCC+TGG | 0.441582 | 7.2:-56407928 | None:intergenic |
GGGAATGGCCGGGATGGGGA+TGG | 0.441685 | 7.2:+56412981 | MS.gene010774:CDS |
TGCAGGATCCCACAGGTGTA+TGG | 0.445820 | 7.2:-56407665 | None:intergenic |
ACACCACCACCGGCGAGAAA+TGG | 0.445835 | 7.2:-56407456 | None:intergenic |
ATGGATCCAGTCCCTAGATC+AGG | 0.446722 | 7.2:+56407618 | MS.gene010774:CDS |
TGCTGTCGTGGCCGCAACGC+AGG | 0.447267 | 7.2:+56407689 | MS.gene010774:CDS |
GATGGGTATGGGAATGGGCA+TGG | 0.448682 | 7.2:+56412999 | MS.gene010774:CDS |
CTGCTGGAGGCCCGTGAAGT+CGG | 0.454266 | 7.2:-56413128 | None:intergenic |
CTTCACGGGCCTCCAGCAGC+CGG | 0.455171 | 7.2:+56413132 | MS.gene010774:CDS |
CTGCCTCAGCGGCGAAGCGT+GGG | 0.455180 | 7.2:+56407730 | MS.gene010774:CDS |
GGTGGTGGTGACCGACTTCA+CGG | 0.457972 | 7.2:+56413117 | MS.gene010774:CDS |
GGGAATGGGGCCGATGGGAA+TGG | 0.459295 | 7.2:+56412966 | MS.gene010774:CDS |
ATGGGTATGGGAATGGGCAT+GGG | 0.465057 | 7.2:+56413000 | MS.gene010774:CDS |
TGAGCCAGTGTGTTCCTAGT+TGG | 0.468451 | 7.2:+56406819 | MS.gene010774:CDS |
AAATTTCTATGCATGGCTTA+GGG | 0.469175 | 7.2:+56407295 | MS.gene010774:CDS |
GAACGAAGAGAGACTGATCT+TGG | 0.469694 | 7.2:-56406869 | None:intergenic |
TGGGAAAAGCCTCGTGGCAG+TGG | 0.469932 | 7.2:+56407378 | MS.gene010774:CDS |
TTCTTTGAACCTGGTGCTGG+AGG | 0.470956 | 7.2:-56414147 | None:intergenic |
CACAGCCATGCCGTTGTTGG+CGG | 0.471163 | 7.2:-56407544 | None:intergenic |
GTCCACAGCCATGCCGTTGT+TGG | 0.471910 | 7.2:-56407547 | None:intergenic |
GCCTCGTGGCAGTGGGACCT+TGG | 0.475332 | 7.2:+56407386 | MS.gene010774:CDS |
CGGGCCTCCAGCAGCCGGGA+TGG | 0.475519 | 7.2:+56413137 | MS.gene010774:CDS |
TTGTTGCATCTGCTGATACA+TGG | 0.477496 | 7.2:-56414121 | None:intergenic |
GGTGTTGTACCTGCGGTTGA+TGG | 0.477521 | 7.2:-56407342 | None:intergenic |
GCGATGGCTGCAGCACGTTG+TGG | 0.478677 | 7.2:-56407510 | None:intergenic |
AATGAAGACATTGCAAAAGT+TGG | 0.480140 | 7.2:+56409383 | MS.gene010774:CDS |
AATGCAGAAGGGTGGAGGAC+GGG | 0.480177 | 7.2:-56413069 | None:intergenic |
TGCGGCCACGACAGCACTGC+AGG | 0.483353 | 7.2:-56407682 | None:intergenic |
GCTCACTTACCCTTTCAGAT+TGG | 0.484516 | 7.2:-56409242 | None:intergenic |
GCCGGGATGGGGATGGGTAT+GGG | 0.484859 | 7.2:+56412988 | MS.gene010774:CDS |
GGAATGGCCGGGATGGGGAT+GGG | 0.489530 | 7.2:+56412982 | MS.gene010774:CDS |
GCACGTTGTGGGTCAAGCCA+TGG | 0.490368 | 7.2:-56407498 | None:intergenic |
CTCCTTAGTAGTATTGGAGC+AGG | 0.491917 | 7.2:-56407580 | None:intergenic |
GCGTGGGAGGGTGGCACACG+TGG | 0.492968 | 7.2:+56407746 | MS.gene010774:CDS |
GGCCCCATTCCCATGCCCAT+TGG | 0.493849 | 7.2:-56412955 | None:intergenic |
CACACGTGGCGGGGAGCGGA+AGG | 0.494432 | 7.2:+56407760 | MS.gene010774:CDS |
GTGAAGTCGGTCACCACCAC+CGG | 0.494653 | 7.2:-56413115 | None:intergenic |
TGACCATGGATGCTTATAGT+AGG | 0.495601 | 7.2:+56414091 | MS.gene010774:CDS |
ATGAATCGCGCTAACATCCC+TGG | 0.495775 | 7.2:+56413039 | MS.gene010774:CDS |
CGCAGGTACAACACCTTCCA+AGG | 0.500491 | 7.2:+56407350 | MS.gene010774:CDS |
AATGGACAAATTTCTATGCA+TGG | 0.502362 | 7.2:+56407288 | MS.gene010774:CDS |
CAACACCTTCCAAGGAAACA+TGG | 0.504499 | 7.2:+56407358 | MS.gene010774:CDS |
TCCCATACCCATCCCCATCC+CGG | 0.505337 | 7.2:-56412989 | None:intergenic |
GATAGGGAATTTGGTATGAC+TGG | 0.510493 | 7.2:+56407849 | MS.gene010774:CDS |
CACGTTGTGGGTCAAGCCAT+GGG | 0.517113 | 7.2:-56407497 | None:intergenic |
GAGCCAGTGTGTTCCTAGTT+GGG | 0.517262 | 7.2:+56406820 | MS.gene010774:CDS |
CGCCAACAACGGCATGGCTG+TGG | 0.518469 | 7.2:+56407545 | MS.gene010774:CDS |
TCACCATTTCTCGCCGGTGG+TGG | 0.519949 | 7.2:+56407453 | MS.gene010774:CDS |
TTCACGGGCCTCCAGCAGCC+GGG | 0.520470 | 7.2:+56413133 | MS.gene010774:CDS |
ATCCAATGGGCATGGGAATG+GGG | 0.523156 | 7.2:+56412953 | MS.gene010774:CDS |
ACTATAAGCATCCATGGTCA+TGG | 0.525290 | 7.2:-56414088 | None:intergenic |
CCCATCCCGGCCATTCCCAT+CGG | 0.525384 | 7.2:-56412976 | None:intergenic |
ATGGAAACATGTTAGTCCCA+TGG | 0.525747 | 7.2:+56407481 | MS.gene010774:CDS |
TCAGCCATCCCGGCTGCTGG+AGG | 0.527772 | 7.2:-56413141 | None:intergenic |
GTGGCCGCAACGCAGGATGA+AGG | 0.527788 | 7.2:+56407696 | MS.gene010774:CDS |
CCTACGTGGGATGCCGGTGG+TGG | 0.528030 | 7.2:+56413102 | MS.gene010774:CDS |
CCAATCCCTGATCTAGGGAC+TGG | 0.531824 | 7.2:-56407624 | None:intergenic |
GCTGCCACAGCCGCCAACAA+CGG | 0.533178 | 7.2:+56407534 | MS.gene010774:CDS |
CCTATGCCTACGTGGGATGC+CGG | 0.533989 | 7.2:+56413096 | MS.gene010774:CDS |
GGTTGGCGGCCATACACCTG+TGG | 0.535991 | 7.2:+56407656 | MS.gene010774:CDS |
CCAGTCCCTAGATCAGGGAT+TGG | 0.536661 | 7.2:+56407624 | MS.gene010774:CDS |
CATTGTCATCGGCATCATCA+TGG | 0.537813 | 7.2:-56412902 | None:intergenic |
TGAGTGGCAGTGCAACCTTT+GGG | 0.538614 | 7.2:+56407793 | MS.gene010774:CDS |
TGGGGCCGATGGGAATGGCC+GGG | 0.538637 | 7.2:+56412971 | MS.gene010774:CDS |
GTGGTGGTGACCGACTTCAC+GGG | 0.539230 | 7.2:+56413118 | MS.gene010774:CDS |
TATTGGAATTTCAGAAAAGG+AGG | 0.542715 | 7.2:+56409343 | MS.gene010774:intron |
CATTCATGCCTATGCCTACG+TGG | 0.542745 | 7.2:+56413088 | MS.gene010774:CDS |
TCCGCGGTGCGGAAAGCTAG+TGG | 0.545630 | 7.2:-56407427 | None:intergenic |
GGGATTGGATCATGCATGGT+TGG | 0.546571 | 7.2:+56407639 | MS.gene010774:CDS |
AGCGGCGAAGCGTGGGAGGG+TGG | 0.548650 | 7.2:+56407737 | MS.gene010774:CDS |
TATACACAACCAATCTGAAA+GGG | 0.550150 | 7.2:+56409233 | MS.gene010774:CDS |
TCCCTGCTCCAATACTACTA+AGG | 0.550539 | 7.2:+56407578 | MS.gene010774:CDS |
ATTGGAATTTCAGAAAAGGA+GGG | 0.550647 | 7.2:+56409344 | MS.gene010774:intron |
AACAGAATCATGGTCATCTA+CGG | 0.554311 | 7.2:-56407940 | None:intergenic |
GGCATGGGAATGGGGCCGAT+GGG | 0.554830 | 7.2:+56412961 | MS.gene010774:CDS |
ATTGGATCATGCATGGTTGG+CGG | 0.555215 | 7.2:+56407642 | MS.gene010774:CDS |
TAGGGACTGGATCCATTGCA+TGG | 0.557029 | 7.2:-56407611 | None:intergenic |
GCTCTGAGAAGCAGTGCACC+AGG | 0.557515 | 7.2:+56407910 | MS.gene010774:CDS |
ATGTCGATGATGAATCCAAT+GGG | 0.557625 | 7.2:+56412940 | MS.gene010774:CDS |
GACCGATAAAGCTTCAATGT+TGG | 0.557873 | 7.2:+56412810 | MS.gene010774:intron |
GCATGAATGCAGAAGGGTGG+AGG | 0.559232 | 7.2:-56413074 | None:intergenic |
TACTGTGACAAACAGAATCA+TGG | 0.559695 | 7.2:-56407950 | None:intergenic |
CTCAGCGGCGAAGCGTGGGA+GGG | 0.561546 | 7.2:+56407734 | MS.gene010774:CDS |
GGCATAGGCATGAATGCAGA+AGG | 0.561818 | 7.2:-56413081 | None:intergenic |
TTGCTGGCTCTGCCTCCCAA+AGG | 0.562082 | 7.2:-56407808 | None:intergenic |
GGTGCGGAAAGCTAGTGGCT+TGG | 0.564273 | 7.2:-56407422 | None:intergenic |
GGGATCCTGCAGTGCTGTCG+TGG | 0.565672 | 7.2:+56407677 | MS.gene010774:CDS |
GCAGAAGGGTGGAGGACGGG+AGG | 0.567239 | 7.2:-56413066 | None:intergenic |
GGGAAAAGCCTCGTGGCAGT+GGG | 0.567714 | 7.2:+56407379 | MS.gene010774:CDS |
CCGGCATCCCACGTAGGCAT+AGG | 0.569236 | 7.2:-56413096 | None:intergenic |
CTATAAGCATCCATGGTCAT+GGG | 0.569472 | 7.2:-56414087 | None:intergenic |
CACAGCCGCCAACAACGGCA+TGG | 0.569818 | 7.2:+56407539 | MS.gene010774:CDS |
TGACACTTGATACGTACGAT+AGG | 0.571959 | 7.2:+56407832 | MS.gene010774:CDS |
CGAAGAGAGACTGATCTTGG+AGG | 0.573312 | 7.2:-56406866 | None:intergenic |
CGGCATGGCTGTGGACGCGT+TGG | 0.575992 | 7.2:+56407554 | MS.gene010774:CDS |
ACAGATCAATTCTTTGAACC+TGG | 0.576343 | 7.2:-56414156 | None:intergenic |
GCTTCGCCGCTGAGGCAGCA+AGG | 0.577611 | 7.2:-56407725 | None:intergenic |
ACACGTGGCGGGGAGCGGAA+GGG | 0.578052 | 7.2:+56407761 | MS.gene010774:CDS |
ATGATCCAATCCCTGATCTA+GGG | 0.578354 | 7.2:-56407629 | None:intergenic |
AGTTGTTGTTGCATTGTCAT+CGG | 0.578530 | 7.2:-56412913 | None:intergenic |
GACACTTGATACGTACGATA+GGG | 0.579795 | 7.2:+56407833 | MS.gene010774:CDS |
TAAAGCTTCAATGTTGGATG+AGG | 0.582737 | 7.2:+56412816 | MS.gene010774:CDS |
GGAGCAGACAACCCATGCAA+TGG | 0.582894 | 7.2:+56407599 | MS.gene010774:CDS |
AGAGAGACTGATCTTGGAGG+TGG | 0.583200 | 7.2:-56406863 | None:intergenic |
CCTCCCACGCTTCGCCGCTG+AGG | 0.583367 | 7.2:-56407733 | None:intergenic |
CAACAACAGCCTCCAGCACC+AGG | 0.583990 | 7.2:+56414138 | MS.gene010774:CDS |
AATGTCGATGATGAATCCAA+TGG | 0.587525 | 7.2:+56412939 | MS.gene010774:CDS |
AATCCTACTATAAGCATCCA+TGG | 0.589299 | 7.2:-56414094 | None:intergenic |
TTGGTTCACTATAGACTCCA+AGG | 0.593852 | 7.2:-56407403 | None:intergenic |
GATGATGAATCCAATGGGCA+TGG | 0.598687 | 7.2:+56412945 | MS.gene010774:CDS |
GAATGCAGAAGGGTGGAGGA+CGG | 0.598977 | 7.2:-56413070 | None:intergenic |
ATTGCAAGCACAAGTGAACA+TGG | 0.601149 | 7.2:+56412858 | MS.gene010774:CDS |
ATGATGAATCCAATGGGCAT+GGG | 0.601337 | 7.2:+56412946 | MS.gene010774:CDS |
TCCTCCTTCATCCTGCGTTG+CGG | 0.602363 | 7.2:-56407700 | None:intergenic |
CTATACACAACCAATCTGAA+AGG | 0.605527 | 7.2:+56409232 | MS.gene010774:CDS |
TGTTTGTCACAGTAGACCAC+CGG | 0.608502 | 7.2:+56407959 | MS.gene010774:CDS |
ATCAGGGATTGGATCATGCA+TGG | 0.608506 | 7.2:+56407635 | MS.gene010774:CDS |
ACAGCACTGCAGGATCCCAC+AGG | 0.616960 | 7.2:-56407672 | None:intergenic |
TGGATCCAGTCCCTAGATCA+GGG | 0.617422 | 7.2:+56407619 | MS.gene010774:CDS |
AGGGACTGGATCCATTGCAT+GGG | 0.619973 | 7.2:-56407610 | None:intergenic |
AAATCACCATTTCTCGCCGG+TGG | 0.621552 | 7.2:+56407450 | MS.gene010774:CDS |
AACACCTTCCAAGGAAACAT+GGG | 0.622242 | 7.2:+56407359 | MS.gene010774:CDS |
GCTGACATGGGAACATCATG+AGG | 0.626938 | 7.2:-56406911 | None:intergenic |
GTTTCCATAAACACCACCAC+CGG | 0.634728 | 7.2:-56407466 | None:intergenic |
ATGCCTACGTGGGATGCCGG+TGG | 0.634760 | 7.2:+56413099 | MS.gene010774:CDS |
GGAGGACGGGAGGCATTCCA+GGG | 0.636983 | 7.2:-56413056 | None:intergenic |
ATAGAGGGAGGAAGCTGACG+TGG | 0.638736 | 7.2:+56409149 | MS.gene010774:intron |
CATAAACATCCATCAACCGC+AGG | 0.640036 | 7.2:+56407333 | MS.gene010774:CDS |
ATGATGTTGCAGAATTGACA+TGG | 0.641179 | 7.2:+56407262 | MS.gene010774:CDS |
GCGGTTGATGGATGTTTATG+CGG | 0.643443 | 7.2:-56407330 | None:intergenic |
GCCGCAACGCAGGATGAAGG+AGG | 0.644929 | 7.2:+56407699 | MS.gene010774:CDS |
GTTGGCGGCCATACACCTGT+GGG | 0.649587 | 7.2:+56407657 | MS.gene010774:CDS |
GGAAAATCACCATTTCTCGC+CGG | 0.651013 | 7.2:+56407447 | MS.gene010774:CDS |
CTGACATGGGAACATCATGA+GGG | 0.655129 | 7.2:-56406910 | None:intergenic |
TCCTTAGTAGTATTGGAGCA+GGG | 0.655762 | 7.2:-56407579 | None:intergenic |
GGAAGGGACCAAAGTATGAG+TGG | 0.656013 | 7.2:+56407777 | MS.gene010774:CDS |
TAGGCATGAATGCAGAAGGG+TGG | 0.656146 | 7.2:-56413077 | None:intergenic |
CTTGGAAGGTGTTGTACCTG+CGG | 0.658125 | 7.2:-56407349 | None:intergenic |
GCCACTAGCTTTCCGCACCG+CGG | 0.661460 | 7.2:+56407426 | MS.gene010774:CDS |
AGGAATCCTTGCTGCCTCAG+CGG | 0.661952 | 7.2:+56407719 | MS.gene010774:CDS |
TCCAAGGTCCCACTGCCACG+AGG | 0.668949 | 7.2:-56407387 | None:intergenic |
GTGGCAGTGCAACCTTTGGG+AGG | 0.676643 | 7.2:+56407796 | MS.gene010774:CDS |
ATTCATGCCTATGCCTACGT+GGG | 0.678415 | 7.2:+56413089 | MS.gene010774:CDS |
GTTGGTCCCAAATTCCAGCA+AGG | 0.680499 | 7.2:+56409401 | MS.gene010774:CDS |
GCATAGGCATGAATGCAGAA+GGG | 0.689554 | 7.2:-56413080 | None:intergenic |
CATCCCAACTAGGAACACAC+TGG | 0.691416 | 7.2:-56406823 | None:intergenic |
AGAATCATGGTCATCTACGG+TGG | 0.703069 | 7.2:-56407937 | None:intergenic |
CCACCACCGGCATCCCACGT+AGG | 0.713333 | 7.2:-56413102 | None:intergenic |
TGATGTTGCAGAATTGACAT+GGG | 0.723669 | 7.2:+56407263 | MS.gene010774:CDS |
GAAACATGGGAAAAGCCTCG+TGG | 0.730042 | 7.2:+56407372 | MS.gene010774:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 56406818 | 56414173 | 56406818 | ID=MS.gene010774 |
chr7.2 | mRNA | 56406818 | 56414173 | 56406818 | ID=MS.gene010774.t1;Parent=MS.gene010774 |
chr7.2 | exon | 56406818 | 56406927 | 56406818 | ID=MS.gene010774.t1.exon1;Parent=MS.gene010774.t1 |
chr7.2 | CDS | 56406818 | 56406927 | 56406818 | ID=cds.MS.gene010774.t1;Parent=MS.gene010774.t1 |
chr7.2 | exon | 56407254 | 56407980 | 56407254 | ID=MS.gene010774.t1.exon2;Parent=MS.gene010774.t1 |
chr7.2 | CDS | 56407254 | 56407980 | 56407254 | ID=cds.MS.gene010774.t1;Parent=MS.gene010774.t1 |
chr7.2 | exon | 56409153 | 56409254 | 56409153 | ID=MS.gene010774.t1.exon3;Parent=MS.gene010774.t1 |
chr7.2 | CDS | 56409153 | 56409254 | 56409153 | ID=cds.MS.gene010774.t1;Parent=MS.gene010774.t1 |
chr7.2 | exon | 56409357 | 56409422 | 56409357 | ID=MS.gene010774.t1.exon4;Parent=MS.gene010774.t1 |
chr7.2 | CDS | 56409357 | 56409422 | 56409357 | ID=cds.MS.gene010774.t1;Parent=MS.gene010774.t1 |
chr7.2 | exon | 56412811 | 56413197 | 56412811 | ID=MS.gene010774.t1.exon5;Parent=MS.gene010774.t1 |
chr7.2 | CDS | 56412811 | 56413197 | 56412811 | ID=cds.MS.gene010774.t1;Parent=MS.gene010774.t1 |
chr7.2 | exon | 56414087 | 56414173 | 56414087 | ID=MS.gene010774.t1.exon6;Parent=MS.gene010774.t1 |
chr7.2 | CDS | 56414087 | 56414173 | 56414087 | ID=cds.MS.gene010774.t1;Parent=MS.gene010774.t1 |
Gene Sequence |
Protein sequence |