AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010853

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010853.t1 MTR_7g445710 87.770 278 25 3 179 451 270 543 1.31e-173 498
MS.gene010853.t1 MTR_7g445710 71.233 219 25 3 1 197 1 203 1.72e-90 285
MS.gene010853.t1 MTR_7g445530 86.290 248 25 3 179 421 270 513 2.41e-149 435
MS.gene010853.t1 MTR_7g445530 71.233 219 25 3 1 197 1 203 1.76e-90 284
MS.gene010853.t1 MTR_7g445600 58.161 435 81 5 7 421 3 356 7.63e-149 428
MS.gene010853.t1 MTR_7g450730 73.646 277 40 3 179 451 258 505 3.13e-137 404
MS.gene010853.t1 MTR_7g450730 68.018 222 30 5 1 200 1 203 1.37e-84 268
MS.gene010853.t1 MTR_7g445810 73.733 217 34 2 1 197 1 214 1.06e-100 302
MS.gene010853.t1 MTR_5g013420 47.782 293 106 5 192 451 811 1089 1.80e-77 261
MS.gene010853.t1 MTR_5g013420 37.500 136 54 2 87 191 570 705 4.79e-19 90.9
MS.gene010853.t1 MTR_4g010830 46.758 293 109 5 192 451 702 980 3.18e-76 256
MS.gene010853.t1 MTR_4g010830 34.815 135 57 2 87 190 462 596 2.33e-17 85.5
MS.gene010853.t1 MTR_5g013420 47.440 293 107 5 192 451 811 1089 3.44e-76 258
MS.gene010853.t1 MTR_5g013420 37.500 136 54 2 87 191 570 705 4.84e-19 90.9
MS.gene010853.t1 MTR_4g010550 43.007 286 98 7 200 451 210 464 4.10e-60 203
MS.gene010853.t1 MTR_4g010550 48.718 78 38 1 116 191 34 111 1.40e-17 85.1
MS.gene010853.t1 MTR_7g084090 34.551 301 146 8 192 451 467 757 4.15e-42 159
MS.gene010853.t1 MTR_1g048950 32.215 298 118 6 192 451 282 533 5.65e-41 154
MS.gene010853.t1 MTR_1g048950 45.570 79 41 1 124 200 88 166 1.76e-11 66.6
MS.gene010853.t1 MTR_7g052480 32.660 297 153 9 192 451 270 556 3.72e-40 151
MS.gene010853.t1 MTR_6g061270 34.219 301 147 8 192 451 404 694 2.19e-38 148
MS.gene010853.t1 MTR_3g011440 31.667 300 144 9 192 446 376 659 1.78e-36 142
MS.gene010853.t1 MTR_8g042750 30.667 300 146 11 191 446 402 683 7.76e-34 134
MS.gene010853.t1 MTR_8g071030 30.418 263 135 5 192 420 487 735 1.74e-33 134
MS.gene010853.t1 MTR_7g088370 32.432 296 128 12 192 446 436 700 1.78e-33 134
MS.gene010853.t1 MTR_8g070070 29.963 267 133 7 192 421 507 756 9.93e-33 132
MS.gene010853.t1 MTR_8g078490 36.735 196 92 4 256 451 1090 1253 1.23e-31 129
MS.gene010853.t1 MTR_8g070075 29.278 263 138 7 192 420 500 748 1.88e-31 128
MS.gene010853.t1 MTR_6g061200 31.788 302 124 8 192 451 404 665 3.99e-31 126
MS.gene010853.t1 MTR_4g132610 36.500 200 87 5 256 451 884 1047 4.17e-30 124
MS.gene010853.t1 MTR_1g035420 28.782 271 143 7 192 427 396 651 2.55e-29 121
MS.gene010853.t1 MTR_5g018850 35.354 198 92 5 256 451 1344 1507 5.07e-29 121
MS.gene010853.t1 MTR_0376s0030 26.812 276 144 7 186 420 302 560 1.45e-27 115
MS.gene010853.t1 MTR_8g078505 35.071 211 95 7 241 446 360 533 3.38e-27 114
MS.gene010853.t1 MTR_6g044690 27.778 270 137 9 192 420 310 562 8.36e-27 113
MS.gene010853.t1 MTR_6g043960 27.273 275 144 8 186 420 222 480 1.50e-25 109
MS.gene010853.t1 MTR_1g035400 28.309 272 145 7 192 428 315 571 1.38e-23 103
MS.gene010853.t1 MTR_2g054460 29.586 169 100 4 256 421 311 463 1.91e-21 97.1
MS.gene010853.t1 MTR_1g080340 32.536 209 108 8 243 449 407 584 7.18e-19 89.7
MS.gene010853.t1 MTR_1g069570 30.476 210 104 7 243 446 568 741 2.57e-17 85.1
MS.gene010853.t1 MTR_7g098390 28.934 197 101 7 256 446 534 697 3.26e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010853.t1 AT2G22740 44.595 296 114 6 192 451 509 790 3.39e-72 243
MS.gene010853.t1 AT2G22740 42.574 101 54 3 95 191 296 396 2.73e-15 79.0
MS.gene010853.t1 AT2G22740 44.595 296 114 6 192 451 509 790 3.39e-72 243
MS.gene010853.t1 AT2G22740 42.574 101 54 3 95 191 296 396 2.73e-15 79.0
MS.gene010853.t1 AT2G35160 43.836 292 92 5 192 451 507 758 5.15e-72 241
MS.gene010853.t1 AT2G35160 39.726 146 53 6 80 191 252 396 9.80e-18 86.7
MS.gene010853.t1 AT2G35160 43.836 292 92 5 192 451 543 794 9.47e-72 241
MS.gene010853.t1 AT2G35160 39.726 146 53 6 80 191 288 432 1.11e-17 86.3
MS.gene010853.t1 AT2G35160 43.836 292 92 5 192 451 543 794 9.47e-72 241
MS.gene010853.t1 AT2G35160 39.726 146 53 6 80 191 288 432 1.11e-17 86.3
MS.gene010853.t1 AT2G35160 43.836 292 92 5 192 451 543 794 9.47e-72 241
MS.gene010853.t1 AT2G35160 39.726 146 53 6 80 191 288 432 1.11e-17 86.3
MS.gene010853.t1 AT2G35160 43.836 292 92 5 192 451 543 794 9.47e-72 241
MS.gene010853.t1 AT2G35160 39.726 146 53 6 80 191 288 432 1.11e-17 86.3
MS.gene010853.t1 AT5G13960 35.117 299 146 8 192 451 201 490 4.93e-42 155
MS.gene010853.t1 AT5G13960 35.117 299 146 8 192 451 335 624 9.85e-42 157
MS.gene010853.t1 AT5G04940 30.872 298 143 11 192 446 388 665 5.65e-32 129
MS.gene010853.t1 AT5G04940 30.872 298 143 11 192 446 388 665 5.65e-32 129
MS.gene010853.t1 AT1G73100 28.912 294 155 8 192 446 386 664 8.16e-31 125
MS.gene010853.t1 AT4G13460 30.189 265 137 5 192 421 386 637 3.87e-30 124
MS.gene010853.t1 AT4G13460 30.189 265 137 5 192 421 386 637 3.87e-30 124
MS.gene010853.t1 AT2G33290 27.143 280 147 8 192 434 388 647 2.57e-26 112
MS.gene010853.t1 AT2G33290 27.143 280 147 8 192 434 388 647 2.57e-26 112
MS.gene010853.t1 AT2G33290 27.143 280 147 8 192 434 388 647 2.57e-26 112
MS.gene010853.t1 AT2G33290 27.143 280 147 8 192 434 388 647 2.57e-26 112
MS.gene010853.t1 AT2G23740 31.937 191 101 4 256 446 1209 1370 4.19e-23 103
MS.gene010853.t1 AT2G23740 31.937 191 101 4 256 446 1216 1377 4.67e-23 103
MS.gene010853.t1 AT2G23740 31.937 191 101 4 256 446 1216 1377 4.67e-23 103
MS.gene010853.t1 AT2G23740 31.937 191 101 4 256 446 1216 1377 4.67e-23 103
MS.gene010853.t1 AT2G24740 28.522 291 153 9 191 446 480 750 9.25e-23 102
MS.gene010853.t1 AT1G17770 30.045 223 118 7 238 446 490 688 4.53e-22 99.8
MS.gene010853.t1 AT3G04380 32.536 209 107 8 243 449 257 433 2.93e-19 90.5
MS.gene010853.t1 AT3G04380 32.536 209 107 8 243 449 284 460 3.24e-19 90.5
MS.gene010853.t1 AT3G04380 32.536 209 107 8 243 449 241 417 3.33e-19 90.1
MS.gene010853.t1 AT3G04380 32.536 209 107 8 243 449 284 460 3.47e-19 90.1
MS.gene010853.t1 AT3G04380 32.536 209 107 8 243 449 257 433 3.56e-19 90.1
MS.gene010853.t1 AT3G04380 32.536 209 107 8 243 449 268 444 3.70e-19 90.1
MS.gene010853.t1 AT3G03750 28.718 195 111 5 256 450 183 349 6.83e-15 76.3
MS.gene010853.t1 AT1G04050 28.641 206 110 7 243 446 548 718 1.75e-14 76.3
MS.gene010853.t1 AT1G04050 28.641 206 110 7 243 446 548 718 1.75e-14 76.3
MS.gene010853.t1 AT1G04050 28.641 206 110 7 243 446 444 614 1.81e-14 76.3
MS.gene010853.t1 AT5G47150 48.148 81 38 2 114 191 164 243 2.32e-13 71.2
MS.gene010853.t1 AT1G76710 32.065 184 74 9 265 446 90 224 1.25e-12 70.1
MS.gene010853.t1 AT1G76710 32.065 184 74 9 265 446 90 224 1.35e-12 70.1
MS.gene010853.t1 AT1G76710 32.065 184 74 9 265 446 90 224 1.35e-12 70.1
MS.gene010853.t1 AT1G76710 32.065 184 74 9 265 446 90 224 1.58e-12 69.7
MS.gene010853.t1 AT2G23740 32.258 124 59 3 256 379 1216 1314 1.74e-12 70.5
MS.gene010853.t1 AT2G23740 32.258 124 59 3 256 379 1216 1314 1.74e-12 70.5
MS.gene010853.t1 AT5G47160 47.222 72 35 1 123 191 258 329 6.38e-11 64.3
MS.gene010853.t1 AT5G47160 47.222 72 35 1 123 191 258 329 6.38e-11 64.3
MS.gene010853.t1 AT5G47160 47.222 72 35 1 123 191 258 329 6.38e-11 64.3

Find 76 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCACTTGAAGCTTCTA+AGG 0.221245 7.2:+54342287 None:intergenic
GATGAGTATTTATTTAATAT+TGG 0.247972 7.2:-54342390 MS.gene010853:CDS
AACATTTCGAGCAAACAAAT+TGG 0.261209 7.2:+54342170 None:intergenic
CTTGAAATGGTTTGTGTTGT+TGG 0.272283 7.2:+54343589 None:intergenic
CGAGTAATGTATTGAAAATA+TGG 0.296319 7.2:+54342678 None:intergenic
ACAATTGATGCTGCTAAGTA+TGG 0.305938 7.2:-54342228 MS.gene010853:CDS
TCAGAGAATGCAATTCCTTC+TGG 0.338329 7.2:-54342480 MS.gene010853:CDS
GGTAACTTCCGTGCTCTCTA+TGG 0.339942 7.2:-54343309 MS.gene010853:CDS
GAATCTTCGAAAAGCCATTC+AGG 0.347836 7.2:+54342645 None:intergenic
ACAAAAGTGTTCGTTTATAC+AGG 0.350376 7.2:-54343023 MS.gene010853:CDS
TCTCATTGATTACGTGATAA+AGG 0.363505 7.2:-54343102 MS.gene010853:CDS
CTCGTAACATTTATCCTGAA+TGG 0.372209 7.2:-54342659 MS.gene010853:CDS
AAGAAAGTTAAAACAACATT+AGG 0.375506 7.2:-54343330 MS.gene010853:CDS
TTTCTTGATTGGTGTTTCCT+TGG 0.377579 7.2:+54343476 None:intergenic
TTCCTGTTGCAGACTTGAAA+TGG 0.382246 7.2:+54343576 None:intergenic
TTGTCACCTACTTCAATTCC+AGG 0.384331 7.2:+54343179 None:intergenic
AGGTGAGATAATTGAAGATC+AGG 0.385083 7.2:-54342436 MS.gene010853:CDS
TTCATATATGGTTGATAGTA+AGG 0.403159 7.2:-54342328 MS.gene010853:CDS
ATGGGAAGAGGATTCATATA+TGG 0.412825 7.2:-54342340 MS.gene010853:CDS
GTGGTTAATCGTATAGATTC+TGG 0.413281 7.2:-54342708 MS.gene010853:CDS
TTTAAACGCAGTTTCTTGAT+TGG 0.417146 7.2:+54343465 None:intergenic
ACAAATTGGGAGAACAACTA+TGG 0.427505 7.2:+54342184 None:intergenic
AACCATTTCAAGTCTGCAAC+AGG 0.438779 7.2:-54343578 MS.gene010853:CDS
ACATTTCGAGCAAACAAATT+GGG 0.449844 7.2:+54342171 None:intergenic
ATACGATTAACCACACATAT+AGG 0.451047 7.2:+54342717 None:intergenic
TTCACAAGGTCTATAGTTCA+TGG 0.458760 7.2:-54342359 MS.gene010853:CDS
CCCTCCACTCTTAAGAGCAC+AGG 0.461039 7.2:+54342584 None:intergenic
TGGCAAGAACTCAACGTTGT+TGG 0.468798 7.2:-54343146 MS.gene010853:CDS
GATCAAGTGATTGATTCAAA+TGG 0.480841 7.2:-54342045 MS.gene010853:CDS
TTTGTGTTGTTGGTTGGTAG+TGG 0.484782 7.2:+54343599 None:intergenic
AAAATTATTGGAAATGTCCC+TGG 0.496911 7.2:-54343197 MS.gene010853:CDS
TTTCTTTCTTCTTGAGTCAT+CGG 0.503960 7.2:+54343347 None:intergenic
AAATGGTTTGTGTTGTTGGT+TGG 0.505226 7.2:+54343593 None:intergenic
CAAGACTAAGGCGAAAGGAT+GGG 0.513493 7.2:-54342511 MS.gene010853:CDS
GGTCTATAGTTCATGGGAAG+AGG 0.525490 7.2:-54342352 MS.gene010853:CDS
AAGACGAAAGCATGTTATTG+TGG 0.528019 7.2:-54342015 MS.gene010853:CDS
TAGGTGACAAGTTTCAGTAT+TGG 0.528561 7.2:-54343166 MS.gene010853:CDS
TCAAGACTAAGGCGAAAGGA+TGG 0.530216 7.2:-54342512 MS.gene010853:CDS
GCCTGTGCTCTTAAGAGTGG+AGG 0.530694 7.2:-54342585 MS.gene010853:CDS
CAAAAGTGTTCGTTTATACA+GGG 0.533398 7.2:-54343022 MS.gene010853:CDS
AAGACTAAGGCGAAAGGATG+GGG 0.542189 7.2:-54342510 MS.gene010853:CDS
TTACCACTTGAAGCTTCTAA+GGG 0.542917 7.2:+54342288 None:intergenic
CGTGCTCTCTATGGAAAACT+CGG 0.549160 7.2:-54343300 MS.gene010853:intron
GTTGATGATCGATGTGATAG+TGG 0.551003 7.2:-54342258 MS.gene010853:CDS
AGAAGCTTCAAGTGGTAAAG+AGG 0.552219 7.2:-54342283 MS.gene010853:CDS
TTTGTTATAGATATTTCCAA+TGG 0.556582 7.2:-54342753 MS.gene010853:intron
TCAAAGAAACACTGAAACCA+AGG 0.567849 7.2:-54343493 MS.gene010853:CDS
TTTGCCTGTGCTCTTAAGAG+TGG 0.575325 7.2:-54342588 MS.gene010853:CDS
CCTGTGCTCTTAAGAGTGGA+GGG 0.588175 7.2:-54342584 MS.gene010853:CDS
TCACAAGGTCTATAGTTCAT+GGG 0.590256 7.2:-54342358 MS.gene010853:CDS
ATGATCGATGTGATAGTGGT+AGG 0.595335 7.2:-54342254 MS.gene010853:CDS
AAAGTCAGCTCATTCATGCT+CGG 0.596521 7.2:+54342087 None:intergenic
TTTACAATGATGATGATCTG+AGG 0.599652 7.2:-54342146 MS.gene010853:CDS
GTGTTCGTTTATACAGGGGA+AGG 0.599990 7.2:-54343017 MS.gene010853:CDS
AAACGATCTTAGAGAATCAG+AGG 0.603303 7.2:-54343410 MS.gene010853:CDS
AATCTCATCAATACAGTCGA+CGG 0.610597 7.2:+54341977 None:intergenic
TTCGTTTATACAGGGGAAGG+AGG 0.611584 7.2:-54343014 MS.gene010853:intron
CTAAGTATGGTAATGTGGCA+AGG 0.612015 7.2:-54342215 MS.gene010853:CDS
TATTGGCAATTATATTCACA+AGG 0.615507 7.2:-54342373 MS.gene010853:CDS
AAGGCAAGTTCATTCACGAT+GGG 0.615664 7.2:-54343223 MS.gene010853:CDS
AATGTCCCTGGAATTGAAGT+AGG 0.621360 7.2:-54343185 MS.gene010853:CDS
TTGGTTGGTAGTGGAAGACG+AGG 0.623624 7.2:+54343608 None:intergenic
TAATCGTATAGATTCTGGCA+AGG 0.632162 7.2:-54342703 MS.gene010853:CDS
TGTCACCTACTTCAATTCCA+GGG 0.640833 7.2:+54343180 None:intergenic
AAAGGCAAGTTCATTCACGA+TGG 0.642963 7.2:-54343224 MS.gene010853:intron
TCACAAATAAAACTTCCAGA+AGG 0.644047 7.2:+54342465 None:intergenic
CAACCCTTAGAAGCTTCAAG+TGG 0.647600 7.2:-54342291 MS.gene010853:CDS
GAGTCATCGGAAGTCAAAGA+CGG 0.650400 7.2:+54343360 None:intergenic
CACAACGAGAGTATTGTCAA+AGG 0.653972 7.2:-54343517 MS.gene010853:CDS
AGAACATTTACGCCCAACAG+AGG 0.655904 7.2:+54342623 None:intergenic
ACTATCACATCGATCATCAA+CGG 0.657622 7.2:+54342260 None:intergenic
AAAAGTGTTCGTTTATACAG+GGG 0.661822 7.2:-54343021 MS.gene010853:CDS
AGAAGCTGTTCCTATATGTG+TGG 0.665038 7.2:-54342727 MS.gene010853:CDS
TGCTGCTAAGTATGGTAATG+TGG 0.666308 7.2:-54342220 MS.gene010853:CDS
TGGTTGGTAGTGGAAGACGA+GGG 0.707958 7.2:+54343609 None:intergenic
GCTGCATATAGCATGATGTG+TGG 0.717627 7.2:+54342120 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGATTTTAAATTTTGTT+TGG - chr7.2:54342809-54342828 MS.gene010853:intron 10.0%
!! AACTTTATAATAACTCTAAT+AGG + chr7.2:54342690-54342709 None:intergenic 15.0%
!! ATAAAGTTTAATTCAAAGAA+CGG - chr7.2:54342702-54342721 MS.gene010853:CDS 15.0%
!! GATGAGTATTTATTTAATAT+TGG - chr7.2:54343218-54343237 MS.gene010853:CDS 15.0%
!! AAGAAAGTTAAAACAACATT+AGG - chr7.2:54342278-54342297 MS.gene010853:CDS 20.0%
!! AATCTATTTGGGAAAAAAAA+GGG - chr7.2:54342784-54342803 MS.gene010853:intron 20.0%
!! ATAACAAAAAATTTCTGATC+AGG + chr7.2:54342843-54342862 None:intergenic 20.0%
!! TTATAAAGTCGAATCTATTT+GGG - chr7.2:54342773-54342792 MS.gene010853:intron 20.0%
!! TTTATAAAGTCGAATCTATT+TGG - chr7.2:54342772-54342791 MS.gene010853:intron 20.0%
!!! AGTTTTATTTGTGAGTATTT+AGG - chr7.2:54343152-54343171 MS.gene010853:CDS 20.0%
!!! ATATCATTTTTCTTTACTCT+AGG + chr7.2:54343056-54343075 None:intergenic 20.0%
!!! TTTGTTATAGATATTTCCAA+TGG - chr7.2:54342855-54342874 MS.gene010853:intron 20.0%
! CGAGTAATGTATTGAAAATA+TGG + chr7.2:54342933-54342952 None:intergenic 25.0%
! GAATCTATTTGGGAAAAAAA+AGG - chr7.2:54342783-54342802 MS.gene010853:intron 25.0%
! TATTGGCAATTATATTCACA+AGG - chr7.2:54343235-54343254 MS.gene010853:intron 25.0%
!!! TTCATATATGGTTGATAGTA+AGG - chr7.2:54343280-54343299 MS.gene010853:intron 25.0%
!!! TTCTTGTCATTTTGATGATA+TGG - chr7.2:54342557-54342576 MS.gene010853:CDS 25.0%
AAAATTATTGGAAATGTCCC+TGG - chr7.2:54342411-54342430 MS.gene010853:CDS 30.0%
AACATTTCGAGCAAACAAAT+TGG + chr7.2:54343441-54343460 None:intergenic 30.0%
AAGTTTAATTCAAAGAACGG+TGG - chr7.2:54342705-54342724 MS.gene010853:CDS 30.0%
ACATTTCGAGCAAACAAATT+GGG + chr7.2:54343440-54343459 None:intergenic 30.0%
ATACGATTAACCACACATAT+AGG + chr7.2:54342894-54342913 None:intergenic 30.0%
CACGATGGGAAAAAAATTAT+TGG - chr7.2:54342399-54342418 MS.gene010853:CDS 30.0%
TCACAAATAAAACTTCCAGA+AGG + chr7.2:54343146-54343165 None:intergenic 30.0%
TTTAAACGCAGTTTCTTGAT+TGG + chr7.2:54342146-54342165 None:intergenic 30.0%
TTTCTTTCTTCTTGAGTCAT+CGG + chr7.2:54342264-54342283 None:intergenic 30.0%
! AATTCTGGAGAATGTGATAA+AGG - chr7.2:54342627-54342646 MS.gene010853:CDS 30.0%
! ATTCTGGAGAATGTGATAAA+GGG - chr7.2:54342628-54342647 MS.gene010853:CDS 30.0%
! GATCAAGTGATTGATTCAAA+TGG - chr7.2:54343563-54343582 MS.gene010853:CDS 30.0%
! TCTCATTGATTACGTGATAA+AGG - chr7.2:54342506-54342525 MS.gene010853:CDS 30.0%
! TTTACAATGATGATGATCTG+AGG - chr7.2:54343462-54343481 MS.gene010853:CDS 30.0%
!! AAAAGTGTTCGTTTATACAG+GGG - chr7.2:54342587-54342606 MS.gene010853:CDS 30.0%
!! ACAAAAGTGTTCGTTTATAC+AGG - chr7.2:54342585-54342604 MS.gene010853:CDS 30.0%
!! CAAAAGTGTTCGTTTATACA+GGG - chr7.2:54342586-54342605 MS.gene010853:CDS 30.0%
!! GCTTCAAATTTTCAAGACTA+AGG - chr7.2:54343085-54343104 MS.gene010853:CDS 30.0%
AAACGATCTTAGAGAATCAG+AGG - chr7.2:54342198-54342217 MS.gene010853:CDS 35.0%
AAACTCGGTAACGAATTTAC+CGG - chr7.2:54342323-54342342 MS.gene010853:CDS 35.0%
ACAAATTGGGAGAACAACTA+TGG + chr7.2:54343427-54343446 None:intergenic 35.0%
ACAATTGATGCTGCTAAGTA+TGG - chr7.2:54343380-54343399 MS.gene010853:CDS 35.0%
ACTATCACATCGATCATCAA+CGG + chr7.2:54343351-54343370 None:intergenic 35.0%
AGGTGAGATAATTGAAGATC+AGG - chr7.2:54343172-54343191 MS.gene010853:CDS 35.0%
ATGGGAAGAGGATTCATATA+TGG - chr7.2:54343268-54343287 MS.gene010853:intron 35.0%
CTCGTAACATTTATCCTGAA+TGG - chr7.2:54342949-54342968 MS.gene010853:intron 35.0%
GGAGGTAATGTCATTAATTC+TGG - chr7.2:54342612-54342631 MS.gene010853:CDS 35.0%
GTGGTTAATCGTATAGATTC+TGG - chr7.2:54342900-54342919 MS.gene010853:intron 35.0%
TAATCGTATAGATTCTGGCA+AGG - chr7.2:54342905-54342924 MS.gene010853:intron 35.0%
TAGGTGACAAGTTTCAGTAT+TGG - chr7.2:54342442-54342461 MS.gene010853:CDS 35.0%
TCAAAGAAACACTGAAACCA+AGG - chr7.2:54342115-54342134 MS.gene010853:CDS 35.0%
TCACAAGGTCTATAGTTCAT+GGG - chr7.2:54343250-54343269 MS.gene010853:intron 35.0%
TTACCACTTGAAGCTTCTAA+GGG + chr7.2:54343323-54343342 None:intergenic 35.0%
TTCACAAGGTCTATAGTTCA+TGG - chr7.2:54343249-54343268 MS.gene010853:intron 35.0%
TTTAATTCAAAGAACGGTGG+TGG - chr7.2:54342708-54342727 MS.gene010853:CDS 35.0%
TTTACCACTTGAAGCTTCTA+AGG + chr7.2:54343324-54343343 None:intergenic 35.0%
! AAATGGTTTGTGTTGTTGGT+TGG + chr7.2:54342018-54342037 None:intergenic 35.0%
! AAGACGAAAGCATGTTATTG+TGG - chr7.2:54343593-54343612 MS.gene010853:CDS 35.0%
! CTTGAAATGGTTTGTGTTGT+TGG + chr7.2:54342022-54342041 None:intergenic 35.0%
! TTTCTTGATTGGTGTTTCCT+TGG + chr7.2:54342135-54342154 None:intergenic 35.0%
! TTTTCGAAGATTCCTCTGTT+GGG - chr7.2:54342973-54342992 MS.gene010853:intron 35.0%
!! ATTTTCAAGACTAAGGCGAA+AGG - chr7.2:54343092-54343111 MS.gene010853:CDS 35.0%
AAAGGCAAGTTCATTCACGA+TGG - chr7.2:54342384-54342403 MS.gene010853:CDS 40.0%
AAAGTCAGCTCATTCATGCT+CGG + chr7.2:54343524-54343543 None:intergenic 40.0%
AAGGCAAGTTCATTCACGAT+GGG - chr7.2:54342385-54342404 MS.gene010853:CDS 40.0%
AATGTCCCTGGAATTGAAGT+AGG - chr7.2:54342423-54342442 MS.gene010853:CDS 40.0%
AGAAGCTGTTCCTATATGTG+TGG - chr7.2:54342881-54342900 MS.gene010853:intron 40.0%
AGAAGCTTCAAGTGGTAAAG+AGG - chr7.2:54343325-54343344 MS.gene010853:CDS 40.0%
GAATCTTCGAAAAGCCATTC+AGG + chr7.2:54342966-54342985 None:intergenic 40.0%
GGTGAGGTGTATTGTTACTA+TGG - chr7.2:54342747-54342766 MS.gene010853:intron 40.0%
TCAGAGAATGCAATTCCTTC+TGG - chr7.2:54343128-54343147 MS.gene010853:CDS 40.0%
TGTCACCTACTTCAATTCCA+GGG + chr7.2:54342431-54342450 None:intergenic 40.0%
TTCCTGTTGCAGACTTGAAA+TGG + chr7.2:54342035-54342054 None:intergenic 40.0%
TTGTCACCTACTTCAATTCC+AGG + chr7.2:54342432-54342451 None:intergenic 40.0%
! AACCATTTCAAGTCTGCAAC+AGG - chr7.2:54342030-54342049 MS.gene010853:CDS 40.0%
! AAGATCGTTTTGCTAGCTGA+AGG + chr7.2:54342188-54342207 None:intergenic 40.0%
! AGGAACAGCTTCTTTTCCAT+TGG + chr7.2:54342874-54342893 None:intergenic 40.0%
! CTAAGTATGGTAATGTGGCA+AGG - chr7.2:54343393-54343412 MS.gene010853:CDS 40.0%
! CTTTTCGAAGATTCCTCTGT+TGG - chr7.2:54342972-54342991 MS.gene010853:intron 40.0%
! TGCTGCTAAGTATGGTAATG+TGG - chr7.2:54343388-54343407 MS.gene010853:CDS 40.0%
!! ATGATCGATGTGATAGTGGT+AGG - chr7.2:54343354-54343373 MS.gene010853:CDS 40.0%
!! CACAACGAGAGTATTGTCAA+AGG - chr7.2:54342091-54342110 MS.gene010853:CDS 40.0%
!! GTTGATGATCGATGTGATAG+TGG - chr7.2:54343350-54343369 MS.gene010853:CDS 40.0%
!! TGTCACGGGTTCTAAAACAA+AGG - chr7.2:54342366-54342385 MS.gene010853:CDS 40.0%
!! TTTGTGTTGTTGGTTGGTAG+TGG + chr7.2:54342012-54342031 None:intergenic 40.0%
AAGACTAAGGCGAAAGGATG+GGG - chr7.2:54343098-54343117 MS.gene010853:CDS 45.0%
AGAACATTTACGCCCAACAG+AGG + chr7.2:54342988-54343007 None:intergenic 45.0%
AGAACCCGTGACACTTTGAT+AGG + chr7.2:54342359-54342378 None:intergenic 45.0%
CAACCCTTAGAAGCTTCAAG+TGG - chr7.2:54343317-54343336 MS.gene010853:CDS 45.0%
CAAGACTAAGGCGAAAGGAT+GGG - chr7.2:54343097-54343116 MS.gene010853:CDS 45.0%
CGTGCTCTCTATGGAAAACT+CGG - chr7.2:54342308-54342327 MS.gene010853:CDS 45.0%
GAGTCATCGGAAGTCAAAGA+CGG + chr7.2:54342251-54342270 None:intergenic 45.0%
GCTGCATATAGCATGATGTG+TGG + chr7.2:54343491-54343510 None:intergenic 45.0%
GGTCTATAGTTCATGGGAAG+AGG - chr7.2:54343256-54343275 MS.gene010853:intron 45.0%
GTGTTCGTTTATACAGGGGA+AGG - chr7.2:54342591-54342610 MS.gene010853:CDS 45.0%
TCAAGACTAAGGCGAAAGGA+TGG - chr7.2:54343096-54343115 MS.gene010853:CDS 45.0%
TGGCAAGAACTCAACGTTGT+TGG - chr7.2:54342462-54342481 MS.gene010853:CDS 45.0%
TTCGTTTATACAGGGGAAGG+AGG - chr7.2:54342594-54342613 MS.gene010853:CDS 45.0%
TTTGCCTGTGCTCTTAAGAG+TGG - chr7.2:54343020-54343039 MS.gene010853:CDS 45.0%
! AATTCAAAGAACGGTGGTGG+TGG - chr7.2:54342711-54342730 MS.gene010853:CDS 45.0%
! CGAGTTTTCCATAGAGAGCA+CGG + chr7.2:54342310-54342329 None:intergenic 45.0%
! CGCTTCCTATCAAAGTGTCA+CGG - chr7.2:54342351-54342370 MS.gene010853:CDS 45.0%
! GCTTCCTATCAAAGTGTCAC+GGG - chr7.2:54342352-54342371 MS.gene010853:CDS 45.0%
CCTGTGCTCTTAAGAGTGGA+GGG - chr7.2:54343024-54343043 MS.gene010853:CDS 50.0%
GGTAACTTCCGTGCTCTCTA+TGG - chr7.2:54342299-54342318 MS.gene010853:CDS 50.0%
!! TGGTTGGTAGTGGAAGACGA+GGG + chr7.2:54342002-54342021 None:intergenic 50.0%
!! TTGGTTGGTAGTGGAAGACG+AGG + chr7.2:54342003-54342022 None:intergenic 50.0%
GCCTGTGCTCTTAAGAGTGG+AGG - chr7.2:54343023-54343042 MS.gene010853:CDS 55.0%
! CCCTCCACTCTTAAGAGCAC+AGG + chr7.2:54343027-54343046 None:intergenic 55.0%
! TTTGATAGGAAGCGCGTCGC+CGG + chr7.2:54342345-54342364 None:intergenic 55.0%
! TGGTGCACGTGGTGGAGGTG+AGG - chr7.2:54342731-54342750 MS.gene010853:CDS 65.0%
!! AACGGTGGTGGTGGTGCACG+TGG - chr7.2:54342720-54342739 MS.gene010853:CDS 65.0%
! GGTGGTGGTGCACGTGGTGG+AGG - chr7.2:54342726-54342745 MS.gene010853:CDS 70.0%
!! GGTGGTGGTGGTGCACGTGG+TGG - chr7.2:54342723-54342742 MS.gene010853:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 54341984 54343646 54341984 ID=MS.gene010853
chr7.2 mRNA 54341984 54343646 54341984 ID=MS.gene010853.t1;Parent=MS.gene010853
chr7.2 exon 54343301 54343646 54343301 ID=MS.gene010853.t1.exon1;Parent=MS.gene010853.t1
chr7.2 CDS 54343301 54343646 54343301 ID=cds.MS.gene010853.t1;Parent=MS.gene010853.t1
chr7.2 exon 54343015 54343242 54343015 ID=MS.gene010853.t1.exon2;Parent=MS.gene010853.t1
chr7.2 CDS 54343015 54343242 54343015 ID=cds.MS.gene010853.t1;Parent=MS.gene010853.t1
chr7.2 exon 54341984 54342765 54341984 ID=MS.gene010853.t1.exon3;Parent=MS.gene010853.t1
chr7.2 CDS 54341984 54342765 54341984 ID=cds.MS.gene010853.t1;Parent=MS.gene010853.t1
Gene Sequence

>MS.gene010853

ATGGCTAAGACGAAGCCCTCGTCTTCCACTACCAACCAACAACACAAACCATTTCAAGTCTGCAACAGGAACTTTACTGAAAGATTATTGTTGTTCAAGAATGTCAGCACAACGAGAGTATTGTCAAAGGTTCAAAGAAACACTGAAACCAAGGAAACACCAATCAAGAAACTGCGTTTAAAACGTTGTTATGCATATGAACCTTCAGCTAGCAAAACGATCTTAGAGAATCAGAGGAAAGAAAGAATCAATGACAAAAACATGCCGTCTTTGACTTCCGATGACTCAAGAAGAAAGAAAGTTAAAACAACATTAGGTAACTTCCGTGCTCTCTATGGAAAACTCGGTAACGAATTTACCGGCGACGCGCTTCCTATCAAAGTGTCACGGGTTCTAAAACAAAGGCAAGTTCATTCACGATGGGAAAAAAATTATTGGAAATGTCCCTGGAATTGAAGTAGGTGACAAGTTTCAGTATTGGCAAGAACTCAACGTTGTTGGTCTTCATCGTCAGAATCTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGCAACTAGCATTGTTTCTTGTCATTTTGATGATATGGATGATACAAAAGTGTTCGTTTATACAGGGGAAGGAGGTAATGTCATTAATTCTGGAGAATGTGATAAAGGGAATCTTGCTCTGATGAATAGTTTTGCTGTTAAGAATCCTATTAGAGTTATTATAAAGTTTAATTCAAAGAACGGTGGTGGTGGTGCACGTGGTGGAGGTGAGGTGTATTGTTACTATGGTCTTTATAAAGTCGAATCTATTTGGGAAAAAAAAGGGAAATTAGATTTTAAATTTTGTTTGGTTAGATTGCCTGATCAGAAATTTTTTGTTATAGATATTTCCAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATATTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCGAAGATTCCTCTGTTGGGCGTAAATGTTCTGATTCAATGAAATTTGCCTGTGCTCTTAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAATGATATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTCTGGAAGTTTTATTTGTGAGTATTTAGGTGAGATAATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGCAATTATATTCACAAGGTCTATAGTTCATGGGAAGAGGATTCATATATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAAGTGGTAAAGAGGCCGTTGATGATCGATGTGATAGTGGTAGGTTTACAATTGATGCTGCTAAGTATGGTAATGTGGCAAGGTTTATCAACCATAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACAATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCGATCAAGTGATTGATTCAAATGGAAATTTAAAGACGAAAGCATGTTATTGTGGAGCTTCTGAATGCATCCGTCGACTGTATTGA
Protein sequence

>MS.gene010853.t1

MAKTKPSSSTTNQQHKPFQVCNRNFTERLLLFKNVSTTRVLSKVQRNTETKETPIKKLRLKRCYAYEPSASKTILENQRKERINDKNMPSLTSDDSRRKKVKTTLGNFRALYGKLGKFIHDGKKIIGNVPGIEVGDKFQYWQELNVVGLHRQNLSLIDYVIKDDNLIATSIVSCHFDDMDDTKVFVYTGEGDISNGKEAVPICVVNRIDSGKVPYFQYITRNIYPEWLFEDSSVGRKCSDSMKFACALKSGGKIPRVKKNDIKFKLQIFKTKAKGWGVRSENAIPSGSFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVYSSWEEDSYMVDSKEMSSYQPLEASSGKEAVDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYNDDDLRIPHIMLYAAENIPSMNELTLNYNYKIDQVIDSNGNLKTKACYCGASECIRRLY