AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010887

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010887.t1 MTR_6g044690 95.583 566 24 1 1 565 1 566 0.0 1092
MS.gene010887.t1 MTR_6g043960 89.286 504 34 1 62 565 1 484 0.0 920
MS.gene010887.t1 MTR_0376s0030 76.512 562 127 3 7 566 7 565 0.0 873
MS.gene010887.t1 MTR_2g054460 82.592 517 38 4 52 566 1 467 0.0 855
MS.gene010887.t1 MTR_1g035420 57.243 573 200 11 5 563 105 646 0.0 633
MS.gene010887.t1 MTR_8g070070 51.104 589 217 11 38 563 177 757 0.0 580
MS.gene010887.t1 MTR_8g070075 50.977 563 214 11 55 563 196 750 0.0 566
MS.gene010887.t1 MTR_8g071030 51.429 560 225 10 43 563 186 737 0.0 565
MS.gene010887.t1 MTR_1g035400 54.023 522 208 9 55 563 63 565 0.0 541
MS.gene010887.t1 MTR_7g088370 38.086 491 256 10 92 563 219 680 1.42e-99 317
MS.gene010887.t1 MTR_8g042750 36.450 524 281 17 60 563 167 658 3.83e-91 295
MS.gene010887.t1 MTR_5g013420 37.838 518 266 17 60 561 581 1058 1.96e-89 298
MS.gene010887.t1 MTR_5g013420 37.838 518 266 17 60 561 581 1058 2.01e-89 298
MS.gene010887.t1 MTR_3g011440 34.286 525 295 13 60 564 141 635 3.36e-89 289
MS.gene010887.t1 MTR_4g010830 38.723 470 244 14 109 561 507 949 9.68e-89 295
MS.gene010887.t1 MTR_6g061270 34.959 492 259 16 109 562 196 664 1.09e-79 265
MS.gene010887.t1 MTR_4g010550 36.117 479 235 17 98 561 11 433 1.53e-79 258
MS.gene010887.t1 MTR_7g084090 35.070 499 270 16 99 562 248 727 1.23e-78 263
MS.gene010887.t1 MTR_6g061200 33.747 483 248 16 109 562 196 635 3.01e-72 244
MS.gene010887.t1 MTR_6g044000 86.667 120 16 0 62 181 1 120 9.76e-65 209
MS.gene010887.t1 MTR_6g044000 100.000 56 0 0 511 566 117 172 3.33e-33 125
MS.gene010887.t1 MTR_7g084090 37.337 383 191 14 99 451 248 611 8.39e-64 221
MS.gene010887.t1 MTR_1g048950 32.671 453 251 11 130 561 88 507 7.33e-50 181
MS.gene010887.t1 MTR_7g445530 29.211 469 243 15 114 561 112 512 6.29e-47 172
MS.gene010887.t1 MTR_7g445710 29.424 469 242 15 114 561 112 512 6.81e-47 172
MS.gene010887.t1 MTR_7g450730 29.888 445 230 14 117 561 112 474 3.06e-43 161
MS.gene010887.t1 MTR_7g052480 28.704 324 185 12 263 562 225 526 5.43e-30 124
MS.gene010887.t1 MTR_7g445600 31.788 151 65 2 411 561 243 355 1.75e-20 93.6
MS.gene010887.t1 MTR_7g445600 33.058 121 75 3 114 233 108 223 1.50e-11 66.6
MS.gene010887.t1 MTR_8g078505 29.609 179 112 3 386 564 354 518 1.32e-19 92.8
MS.gene010887.t1 MTR_5g018850 30.000 180 113 3 380 558 1313 1480 1.22e-18 90.9
MS.gene010887.t1 MTR_4g132610 28.723 188 117 4 380 564 853 1026 2.15e-17 86.7
MS.gene010887.t1 MTR_8g078490 29.255 188 116 4 380 564 1059 1232 2.48e-17 86.7
MS.gene010887.t1 MTR_1g069570 22.476 307 172 8 309 564 430 721 2.61e-17 86.3
MS.gene010887.t1 MTR_7g098390 24.214 318 167 12 300 563 379 676 1.33e-14 77.4
MS.gene010887.t1 MTR_1g069570 22.901 262 137 7 309 520 430 676 1.74e-13 73.9
MS.gene010887.t1 MTR_5g098680 32.484 157 86 4 137 280 267 416 2.57e-13 73.2
MS.gene010887.t1 MTR_4g131630 61.538 52 17 1 508 559 1 49 2.10e-12 62.4
MS.gene010887.t1 MTR_1g064770 43.750 64 35 1 391 453 28 91 5.63e-12 62.4
MS.gene010887.t1 MTR_8g102580 30.573 157 89 4 137 280 261 410 5.14e-11 65.9
MS.gene010887.t1 MTR_7g445810 29.730 148 95 3 117 261 128 269 9.80e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010887.t1 AT4G13460 48.387 558 240 13 27 563 108 638 2.62e-171 500
MS.gene010887.t1 AT4G13460 48.387 558 240 13 27 563 108 638 2.62e-171 500
MS.gene010887.t1 AT2G33290 48.120 532 239 11 45 563 132 639 9.31e-168 491
MS.gene010887.t1 AT2G33290 48.120 532 239 11 45 563 132 639 9.31e-168 491
MS.gene010887.t1 AT2G33290 48.120 532 239 11 45 563 132 639 9.31e-168 491
MS.gene010887.t1 AT2G33290 48.120 532 239 11 45 563 132 639 9.31e-168 491
MS.gene010887.t1 AT2G22740 34.741 521 290 13 60 561 270 759 1.15e-87 288
MS.gene010887.t1 AT2G22740 34.741 521 290 13 60 561 270 759 1.15e-87 288
MS.gene010887.t1 AT2G35160 36.989 465 229 13 114 561 310 727 3.00e-84 278
MS.gene010887.t1 AT2G35160 36.989 465 229 13 114 561 346 763 9.01e-84 278
MS.gene010887.t1 AT2G35160 36.989 465 229 13 114 561 346 763 9.01e-84 278
MS.gene010887.t1 AT2G35160 36.989 465 229 13 114 561 346 763 9.01e-84 278
MS.gene010887.t1 AT2G35160 36.989 465 229 13 114 561 346 763 9.01e-84 278
MS.gene010887.t1 AT5G04940 34.749 518 292 14 60 563 155 640 4.25e-83 273
MS.gene010887.t1 AT5G04940 34.749 518 292 14 60 563 155 640 4.25e-83 273
MS.gene010887.t1 AT1G73100 35.484 527 292 17 61 563 137 639 1.35e-82 271
MS.gene010887.t1 AT5G13960 34.969 489 263 19 109 562 126 594 6.91e-76 253
MS.gene010887.t1 AT5G13960 35.043 468 250 18 130 562 12 460 2.54e-75 248
MS.gene010887.t1 AT1G17770 34.529 446 268 11 132 563 226 661 2.49e-73 248
MS.gene010887.t1 AT2G24740 36.629 445 246 14 129 563 306 724 1.11e-71 244
MS.gene010887.t1 AT5G47150 37.712 236 115 8 53 279 112 324 3.69e-33 129
MS.gene010887.t1 AT2G23740 29.553 291 149 10 305 562 1089 1356 2.68e-24 108
MS.gene010887.t1 AT2G23740 29.553 291 149 10 305 562 1089 1356 2.68e-24 108
MS.gene010887.t1 AT2G23740 29.553 291 149 10 305 562 1089 1356 2.68e-24 108
MS.gene010887.t1 AT2G23740 29.553 291 149 10 305 562 1082 1349 3.03e-24 108
MS.gene010887.t1 AT5G47160 38.122 181 94 6 106 276 236 408 5.20e-24 105
MS.gene010887.t1 AT5G47160 38.122 181 94 6 106 276 236 408 5.20e-24 105
MS.gene010887.t1 AT5G47160 38.122 181 94 6 106 276 236 408 5.20e-24 105
MS.gene010887.t1 AT2G23740 30.522 249 117 10 305 520 1089 1314 2.66e-19 92.8
MS.gene010887.t1 AT2G23740 30.522 249 117 10 305 520 1089 1314 2.66e-19 92.8
MS.gene010887.t1 AT3G03750 27.273 275 160 7 309 562 68 323 3.72e-18 86.7
MS.gene010887.t1 AT2G05900 38.150 173 91 9 174 337 26 191 5.19e-18 85.5
MS.gene010887.t1 AT1G57820 30.233 172 90 6 132 280 263 427 5.88e-12 68.9
MS.gene010887.t1 AT1G57820 30.233 172 90 6 132 280 263 427 5.88e-12 68.9
MS.gene010887.t1 AT1G57820 30.769 169 90 7 132 280 263 424 1.09e-11 68.2

Find 131 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTTTGATCATGGTAAT+TGG 0.179510 7.2:+53393754 MS.gene010887:CDS
ATTGAATGTTGGTTTGAAAA+AGG 0.222300 7.2:+53392925 MS.gene010887:CDS
ACATAGGATTATCACATAAT+TGG 0.283098 7.2:-53393050 None:intergenic
TTGGATGTTTCCCCATCTTA+TGG 0.286358 7.2:+53393773 MS.gene010887:CDS
AGATTGATGTCAGGGTTATT+CGG 0.302450 7.2:+53392833 MS.gene010887:CDS
TGGAACGATGGTGCGCATTA+TGG 0.314125 7.2:-53392188 None:intergenic
GATTCGCGTGTCGGGTTTGC+TGG 0.315260 7.2:+53392378 MS.gene010887:CDS
GATTGATGTCAGGGTTATTC+GGG 0.327538 7.2:+53392834 MS.gene010887:CDS
AGAAACCGTGTGACACAAAA+AGG 0.338747 7.2:+53393384 MS.gene010887:CDS
CCAGTTCCTGGTGTTTGTAT+TGG 0.341157 7.2:+53392562 MS.gene010887:CDS
AGGATCATACTGCCCATCTT+AGG 0.342121 7.2:-53393000 None:intergenic
CATGCTAGTATGAGTTCTAA+TGG 0.360661 7.2:+53392661 MS.gene010887:CDS
ATGAATCTAGTTGGGGAGTT+AGG 0.362684 7.2:+53393439 MS.gene010887:CDS
TATTATTCACTTCTTCTGTC+TGG 0.364776 7.2:-53392456 None:intergenic
CAGAAGAAGTGAATAATAGT+AGG 0.376433 7.2:+53392461 MS.gene010887:CDS
AAATCTAAGCAGAAGCTTAG+AGG 0.376549 7.2:+53392265 MS.gene010887:CDS
TAGATCTAATGAATCTAGTT+GGG 0.379002 7.2:+53393431 MS.gene010887:CDS
ATAAAAGTTCCAGCTAGAAT+AGG 0.380021 7.2:-53393471 None:intergenic
AACATTGGAAATGCCGCCTT+CGG 0.382051 7.2:-53393174 None:intergenic
TCCAATGGGAAGGAGAATAT+TGG 0.382212 7.2:+53393093 MS.gene010887:CDS
TGCGAAGGACAACTACAAAA+AGG 0.399229 7.2:-53393357 None:intergenic
GTGCGCATTATGGAAGGGTT+TGG 0.406589 7.2:-53392178 None:intergenic
TTCCTCGTCGTCATACTTTG+AGG 0.406751 7.2:-53393204 None:intergenic
TAGCAGCAATCAAGTCATTT+CGG 0.407660 7.2:-53392486 None:intergenic
CAATTAGTTCTCTTTGATCA+TGG 0.411850 7.2:+53393747 MS.gene010887:CDS
TTTATAAGTTTAAGTTATCA+AGG 0.412998 7.2:+53392965 MS.gene010887:CDS
TAAGCATACTAGCTTCCTTA+AGG 0.413945 7.2:-53393020 None:intergenic
TAGTTGGGGAGTTAGGTCTT+TGG 0.416783 7.2:+53393446 MS.gene010887:CDS
ATAATGCGCACCATCGTTCC+AGG 0.418375 7.2:+53392190 MS.gene010887:CDS
GAATAGGTCTACTCAAGAAT+GGG 0.418852 7.2:+53393593 MS.gene010887:CDS
TTTGATTCGATTCGCGTGTC+GGG 0.421813 7.2:+53392370 MS.gene010887:CDS
CTTGATCATGGGGTAGAAGC+TGG 0.421865 7.2:+53393837 MS.gene010887:CDS
TAAAAGTTCCAGCTAGAATA+GGG 0.427435 7.2:-53393470 None:intergenic
CCATTGCAAATACCATAAGA+TGG 0.432457 7.2:-53393785 None:intergenic
TGTATAAGATAATTGAATGT+TGG 0.433790 7.2:+53392914 MS.gene010887:CDS
AAAATCATTGGTCCAGTTCC+TGG 0.434098 7.2:+53392550 MS.gene010887:CDS
ACATTGGAAATGCCGCCTTC+GGG 0.434321 7.2:-53393173 None:intergenic
GAACAAACACATTCGGAGTT+GGG 0.436138 7.2:-53393725 None:intergenic
GTCCGTATCGTGAGATGGTC+CGG 0.436727 7.2:+53392332 MS.gene010887:CDS
TGAATAGGTCTACTCAAGAA+TGG 0.436832 7.2:+53393592 MS.gene010887:CDS
GAATGTTCTGAATGCGTTGA+TGG 0.438444 7.2:+53393243 MS.gene010887:CDS
GTTTGATTCGATTCGCGTGT+CGG 0.444343 7.2:+53392369 MS.gene010887:CDS
CAAACAAAATTCTTGTTCTC+CGG 0.445353 7.2:-53392351 None:intergenic
TGGTACTTCTACTACTAGTA+AGG 0.451010 7.2:+53392873 MS.gene010887:CDS
TGCAATATGAGATTGATGTC+AGG 0.456152 7.2:+53392824 MS.gene010887:CDS
GATGGGCAGTATGATCCTTA+AGG 0.457082 7.2:+53393005 MS.gene010887:CDS
TTAGATCTAATGAATCTAGT+TGG 0.458265 7.2:+53393430 MS.gene010887:CDS
CCATCTTATGGTATTTGCAA+TGG 0.459327 7.2:+53393785 MS.gene010887:CDS
ACTAGTGTGGTTGTGTCTGA+TGG 0.461191 7.2:+53392697 MS.gene010887:CDS
CCAATACAAACACCAGGAAC+TGG 0.467377 7.2:-53392562 None:intergenic
CTTTCTGATGATATTTCCAA+TGG 0.469201 7.2:+53393078 MS.gene010887:CDS
GGTTCAAGGACAACCTAAGA+TGG 0.472799 7.2:+53392987 MS.gene010887:CDS
CATTGCAAATACCATAAGAT+GGG 0.474185 7.2:-53393784 None:intergenic
TATCATGATGTGAAAATCAT+TGG 0.477666 7.2:+53392538 MS.gene010887:CDS
ACCAATATTCTCCTTCCCAT+TGG 0.482976 7.2:-53393094 None:intergenic
TTTAAGTTATCAAGGGTTCA+AGG 0.488074 7.2:+53392973 MS.gene010887:CDS
TGAACAAACACATTCGGAGT+TGG 0.488895 7.2:-53393726 None:intergenic
CTCGTCGGGACCTGGAACGA+TGG 0.490656 7.2:-53392200 None:intergenic
CTCCCTAGTCAAAACTAGTC+CGG 0.496317 7.2:-53393505 None:intergenic
ACTACCCCTTATAGTAAAAG+TGG 0.498302 7.2:+53393294 MS.gene010887:CDS
AGAAGCGAAATGTGTGTGAT+TGG 0.498665 7.2:+53392601 MS.gene010887:CDS
ACTAATTGAACAAACACATT+CGG 0.504273 7.2:-53393732 None:intergenic
AATCTAAGCAGAAGCTTAGA+GGG 0.504640 7.2:+53392266 MS.gene010887:CDS
AAAAGGTATTAAATATAGGT+TGG 0.507633 7.2:+53393401 MS.gene010887:CDS
TCAAGACTAAGCTCTCTCAT+TGG 0.507939 7.2:-53393819 None:intergenic
TCTTTGGACCCTATTCTAGC+TGG 0.516120 7.2:+53393462 MS.gene010887:CDS
CACAACCACACTAGTAGCAA+TGG 0.516405 7.2:-53392689 None:intergenic
TGTGTTTCTTCAATCATGAA+TGG 0.517110 7.2:+53393267 MS.gene010887:CDS
AGAGAGCTTAGTCTTGATCA+TGG 0.523319 7.2:+53393825 MS.gene010887:CDS
AGAGTTATGTTCACCATCCA+TGG 0.526426 7.2:-53393544 None:intergenic
TGATGATATTTCCAATGGGA+AGG 0.528993 7.2:+53393083 MS.gene010887:CDS
GAGAGCTTAGTCTTGATCAT+GGG 0.530152 7.2:+53393826 MS.gene010887:CDS
AGACTAAGCTCTCTCATTGG+AGG 0.531678 7.2:-53393816 None:intergenic
TACATGGTCAACCACAAGCT+GGG 0.533174 7.2:+53392626 MS.gene010887:CDS
AAATCGAAAGTAGGATATGC+GGG 0.538131 7.2:-53393651 None:intergenic
ACAACCACACTAGTAGCAAT+GGG 0.546031 7.2:-53392688 None:intergenic
GAAGCTTAGAGGGCAGATCA+AGG 0.550266 7.2:+53392276 MS.gene010887:CDS
TATGAAGCAGGATCAGAAGT+TGG 0.550833 7.2:+53392771 MS.gene010887:CDS
TGGGCTATGACTAATATAGC+TGG 0.552213 7.2:-53393706 None:intergenic
GCTACTTTGATGAACGATCA+TGG 0.552325 7.2:+53392505 MS.gene010887:CDS
TGTTCACACTGCGATGGATG+CGG 0.556445 7.2:+53392303 MS.gene010887:CDS
AAATTACGACAGCAACACTC+TGG 0.557571 7.2:+53392228 MS.gene010887:CDS
AGAAGAAGTGAATAATAGTA+GGG 0.557866 7.2:+53392462 MS.gene010887:CDS
CTTTGAGGAAGCAAGAACAT+TGG 0.561306 7.2:-53393189 None:intergenic
TGGCCATGGTGATATGAAGC+AGG 0.562913 7.2:+53392759 MS.gene010887:CDS
ACGATGGTGCGCATTATGGA+AGG 0.563091 7.2:-53392184 None:intergenic
TTGATCATGGGGTAGAAGCT+GGG 0.563836 7.2:+53393838 MS.gene010887:CDS
CTCCGGACCATCTCACGATA+CGG 0.564668 7.2:-53392334 None:intergenic
TTACATGGTCAACCACAAGC+TGG 0.564688 7.2:+53392625 MS.gene010887:CDS
TCATCAGAAAGGACATACAT+AGG 0.567324 7.2:-53393066 None:intergenic
ATGTGTGTGATTGGTTTACA+TGG 0.570925 7.2:+53392610 MS.gene010887:CDS
CATTGGAAATATCATCAGAA+AGG 0.571115 7.2:-53393077 None:intergenic
GGAACGAGGCAACCTTGCTA+TGG 0.574021 7.2:+53392792 MS.gene010887:CDS
CCACACTAGTAGCAATGGGC+TGG 0.574305 7.2:-53392684 None:intergenic
TCCAATGCAAAATCGAAAGT+AGG 0.574831 7.2:-53393660 None:intergenic
TTTCTGATGATATTTCCAAT+GGG 0.576995 7.2:+53393079 MS.gene010887:CDS
GGAGACTCTATTATCTACTC+TGG 0.577576 7.2:+53392739 MS.gene010887:CDS
GCAATATGAGATTGATGTCA+GGG 0.582106 7.2:+53392825 MS.gene010887:CDS
GGATATAATGATGATGATCA+AGG 0.586899 7.2:+53392718 MS.gene010887:CDS
GACTAAGCTCTCTCATTGGA+GGG 0.593113 7.2:-53393815 None:intergenic
TACGACAGCAACACTCTGGA+GGG 0.596029 7.2:+53392232 MS.gene010887:CDS
TCACCGTCCGTATCGTGAGA+TGG 0.597910 7.2:+53392327 MS.gene010887:CDS
GGAGCTTGTTCACACTGCGA+TGG 0.601804 7.2:+53392297 MS.gene010887:CDS
GCATACTTGTCACCATAGCA+AGG 0.603748 7.2:-53392804 None:intergenic
AGATCTAATGAATCTAGTTG+GGG 0.604580 7.2:+53393432 MS.gene010887:CDS
GGGAGATACTCAAATTGCAT+AGG 0.607274 7.2:-53393153 None:intergenic
GTTCAAGGACAACCTAAGAT+GGG 0.610771 7.2:+53392988 MS.gene010887:CDS
TTATAAGTTTAAGTTATCAA+GGG 0.615340 7.2:+53392966 MS.gene010887:CDS
TTACGACAGCAACACTCTGG+AGG 0.618333 7.2:+53392231 MS.gene010887:CDS
TCTATTATCTACTCTGGCCA+TGG 0.620402 7.2:+53392745 MS.gene010887:CDS
CGATGGTGCGCATTATGGAA+GGG 0.626216 7.2:-53392183 None:intergenic
CTACCCCTTATAGTAAAAGT+GGG 0.630650 7.2:+53393295 MS.gene010887:CDS
GAAGCTAGTATGCTTAAGAG+AGG 0.635462 7.2:+53393027 MS.gene010887:CDS
ACACGGTTTCTGCAATGCGA+AGG 0.638201 7.2:-53393372 None:intergenic
AGAGCTTAGTCTTGATCATG+GGG 0.638779 7.2:+53393827 MS.gene010887:CDS
CATTGGATGTATCAACGATG+AGG 0.644772 7.2:+53393676 MS.gene010887:CDS
AAATAATCAATCCCAGCTTG+TGG 0.645273 7.2:-53392637 None:intergenic
AAAATCGAAAGTAGGATATG+CGG 0.648976 7.2:-53393652 None:intergenic
ATTGCAAATACCATAAGATG+GGG 0.649831 7.2:-53393783 None:intergenic
CCAGCCCATTGCTACTAGTG+TGG 0.654306 7.2:+53392684 MS.gene010887:CDS
AATAGGTCTACTCAAGAATG+GGG 0.657058 7.2:+53393594 MS.gene010887:CDS
GGAAGGAGAATATTGGTGTG+AGG 0.669233 7.2:+53393100 MS.gene010887:CDS
ATATCACCAATACAAACACC+AGG 0.674752 7.2:-53392568 None:intergenic
GCAATTTGAGTATCTCCCGA+AGG 0.676490 7.2:+53393158 MS.gene010887:CDS
CAGGATCAGAAGTTGGAACG+AGG 0.676511 7.2:+53392778 MS.gene010887:CDS
ATTGATGTCAGGGTTATTCG+GGG 0.677347 7.2:+53392835 MS.gene010887:CDS
GATCCTGCTTCATATCACCA+TGG 0.685147 7.2:-53392762 None:intergenic
GGACCATCTCACGATACGGA+CGG 0.685403 7.2:-53392330 None:intergenic
ATTTGAGTATCTCCCGAAGG+CGG 0.692509 7.2:+53393161 MS.gene010887:CDS
AGGTCGTTGATTTATGAATG+CGG 0.693955 7.2:+53393333 MS.gene010887:CDS
TTCCTCAAAGTATGACGACG+AGG 0.712132 7.2:+53393202 MS.gene010887:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAGTTTAAGTTATCAA+GGG + chr7.2:53392966-53392985 MS.gene010887:CDS 15.0%
!!! TTTATAAGTTTAAGTTATCA+AGG + chr7.2:53392965-53392984 MS.gene010887:CDS 15.0%
!! TGTATAAGATAATTGAATGT+TGG + chr7.2:53392914-53392933 MS.gene010887:CDS 20.0%
!!! AAAAGGTATTAAATATAGGT+TGG + chr7.2:53393401-53393420 MS.gene010887:CDS 20.0%
!!! CACAAAAAGGTATTAAATAT+AGG + chr7.2:53393397-53393416 MS.gene010887:CDS 20.0%
! ACATAGGATTATCACATAAT+TGG - chr7.2:53393053-53393072 None:intergenic 25.0%
! ACTAATTGAACAAACACATT+CGG - chr7.2:53393735-53393754 None:intergenic 25.0%
! AGAAGAAGTGAATAATAGTA+GGG + chr7.2:53392462-53392481 MS.gene010887:CDS 25.0%
! TAGATCTAATGAATCTAGTT+GGG + chr7.2:53393431-53393450 MS.gene010887:CDS 25.0%
! TATCATGATGTGAAAATCAT+TGG + chr7.2:53392538-53392557 MS.gene010887:CDS 25.0%
! TTAGATCTAATGAATCTAGT+TGG + chr7.2:53393430-53393449 MS.gene010887:CDS 25.0%
! TTTCTGATGATATTTCCAAT+GGG + chr7.2:53393079-53393098 MS.gene010887:CDS 25.0%
!!! AGTAAGGTTTTTGTTTATGA+TGG + chr7.2:53392889-53392908 MS.gene010887:CDS 25.0%
!!! ATCCAAATCGATTTTTGAAT+AGG + chr7.2:53393577-53393596 MS.gene010887:CDS 25.0%
!!! ATTGAATGTTGGTTTGAAAA+AGG + chr7.2:53392925-53392944 MS.gene010887:CDS 25.0%
AAAATCGAAAGTAGGATATG+CGG - chr7.2:53393655-53393674 None:intergenic 30.0%
AGATCTAATGAATCTAGTTG+GGG + chr7.2:53393432-53393451 MS.gene010887:CDS 30.0%
ATAAAAGTTCCAGCTAGAAT+AGG - chr7.2:53393474-53393493 None:intergenic 30.0%
ATTGCAAATACCATAAGATG+GGG - chr7.2:53393786-53393805 None:intergenic 30.0%
CAAACAAAATTCTTGTTCTC+CGG - chr7.2:53392354-53392373 None:intergenic 30.0%
CAGAAGAAGTGAATAATAGT+AGG + chr7.2:53392461-53392480 MS.gene010887:CDS 30.0%
CATTGCAAATACCATAAGAT+GGG - chr7.2:53393787-53393806 None:intergenic 30.0%
CATTGGAAATATCATCAGAA+AGG - chr7.2:53393080-53393099 None:intergenic 30.0%
CTTTCTGATGATATTTCCAA+TGG + chr7.2:53393078-53393097 MS.gene010887:CDS 30.0%
GACCTATTCAAAAATCGATT+TGG - chr7.2:53393582-53393601 None:intergenic 30.0%
TAAAAGTTCCAGCTAGAATA+GGG - chr7.2:53393473-53393492 None:intergenic 30.0%
TATTATTCACTTCTTCTGTC+TGG - chr7.2:53392459-53392478 None:intergenic 30.0%
TGTGTTTCTTCAATCATGAA+TGG + chr7.2:53393267-53393286 MS.gene010887:CDS 30.0%
TTCTCTTTGATCATGGTAAT+TGG + chr7.2:53393754-53393773 MS.gene010887:CDS 30.0%
! AAAAGTGGGATTCTTTTGAA+AGG + chr7.2:53393309-53393328 MS.gene010887:CDS 30.0%
! ACTTTTATATGTGAGTTCAC+CGG + chr7.2:53393486-53393505 MS.gene010887:CDS 30.0%
! CAATTAGTTCTCTTTGATCA+TGG + chr7.2:53393747-53393766 MS.gene010887:CDS 30.0%
! GGATATAATGATGATGATCA+AGG + chr7.2:53392718-53392737 MS.gene010887:CDS 30.0%
! GGTTTGAAAAAGGTATATCT+GGG + chr7.2:53392935-53392954 MS.gene010887:CDS 30.0%
! TAATACCTTTTTGTGTCACA+CGG - chr7.2:53393392-53393411 None:intergenic 30.0%
! TGGTTTGAAAAAGGTATATC+TGG + chr7.2:53392934-53392953 MS.gene010887:CDS 30.0%
! TTTAAGTTATCAAGGGTTCA+AGG + chr7.2:53392973-53392992 MS.gene010887:CDS 30.0%
!! AAAGTGGGATTCTTTTGAAA+GGG + chr7.2:53393310-53393329 MS.gene010887:CDS 30.0%
!! AATCCCACTTTTACTATAAG+GGG - chr7.2:53393301-53393320 None:intergenic 30.0%
!! AGAATCCCACTTTTACTATA+AGG - chr7.2:53393303-53393322 None:intergenic 30.0%
!! GAATCCCACTTTTACTATAA+GGG - chr7.2:53393302-53393321 None:intergenic 30.0%
AAATAATCAATCCCAGCTTG+TGG - chr7.2:53392640-53392659 None:intergenic 35.0%
AAATCGAAAGTAGGATATGC+GGG - chr7.2:53393654-53393673 None:intergenic 35.0%
AAATCTAAGCAGAAGCTTAG+AGG + chr7.2:53392265-53392284 MS.gene010887:CDS 35.0%
AATAGGTCTACTCAAGAATG+GGG + chr7.2:53393594-53393613 MS.gene010887:CDS 35.0%
AATCTAAGCAGAAGCTTAGA+GGG + chr7.2:53392266-53392285 MS.gene010887:CDS 35.0%
ACTACCCCTTATAGTAAAAG+TGG + chr7.2:53393294-53393313 MS.gene010887:CDS 35.0%
AGATTGATGTCAGGGTTATT+CGG + chr7.2:53392833-53392852 MS.gene010887:CDS 35.0%
ATATCACCAATACAAACACC+AGG - chr7.2:53392571-53392590 None:intergenic 35.0%
CCATCTTATGGTATTTGCAA+TGG + chr7.2:53393785-53393804 MS.gene010887:CDS 35.0%
CCATTGCAAATACCATAAGA+TGG - chr7.2:53393788-53393807 None:intergenic 35.0%
CTACCCCTTATAGTAAAAGT+GGG + chr7.2:53393295-53393314 MS.gene010887:CDS 35.0%
GAATAGGTCTACTCAAGAAT+GGG + chr7.2:53393593-53393612 MS.gene010887:CDS 35.0%
GCAATATGAGATTGATGTCA+GGG + chr7.2:53392825-53392844 MS.gene010887:CDS 35.0%
TAGCAGCAATCAAGTCATTT+CGG - chr7.2:53392489-53392508 None:intergenic 35.0%
TCATCAGAAAGGACATACAT+AGG - chr7.2:53393069-53393088 None:intergenic 35.0%
TCCAATGCAAAATCGAAAGT+AGG - chr7.2:53393663-53393682 None:intergenic 35.0%
TGAATAGGTCTACTCAAGAA+TGG + chr7.2:53393592-53393611 MS.gene010887:CDS 35.0%
TGATGATATTTCCAATGGGA+AGG + chr7.2:53393083-53393102 MS.gene010887:CDS 35.0%
TGCAATATGAGATTGATGTC+AGG + chr7.2:53392824-53392843 MS.gene010887:CDS 35.0%
TGGTACTTCTACTACTAGTA+AGG + chr7.2:53392873-53392892 MS.gene010887:CDS 35.0%
! CATGCTAGTATGAGTTCTAA+TGG + chr7.2:53392661-53392680 MS.gene010887:CDS 35.0%
! GAAAAAGGTATATCTGGGTT+TGG + chr7.2:53392940-53392959 MS.gene010887:CDS 35.0%
! GTCGTAATTTTGTAACTCGT+CGG - chr7.2:53392218-53392237 None:intergenic 35.0%
! TAAGCATACTAGCTTCCTTA+AGG - chr7.2:53393023-53393042 None:intergenic 35.0%
! TCCTACTTTCGATTTTGCAT+TGG + chr7.2:53393659-53393678 MS.gene010887:CDS 35.0%
! TCGTAATTTTGTAACTCGTC+GGG - chr7.2:53392217-53392236 None:intergenic 35.0%
!! AGGTCGTTGATTTATGAATG+CGG + chr7.2:53393333-53393352 MS.gene010887:CDS 35.0%
!! ATGTGTGTGATTGGTTTACA+TGG + chr7.2:53392610-53392629 MS.gene010887:CDS 35.0%
AAAATCATTGGTCCAGTTCC+TGG + chr7.2:53392550-53392569 MS.gene010887:CDS 40.0%
AAATTACGACAGCAACACTC+TGG + chr7.2:53392228-53392247 MS.gene010887:CDS 40.0%
ACAACCACACTAGTAGCAAT+GGG - chr7.2:53392691-53392710 None:intergenic 40.0%
ACCAATATTCTCCTTCCCAT+TGG - chr7.2:53393097-53393116 None:intergenic 40.0%
AGAAACCGTGTGACACAAAA+AGG + chr7.2:53393384-53393403 MS.gene010887:CDS 40.0%
AGAAGCGAAATGTGTGTGAT+TGG + chr7.2:53392601-53392620 MS.gene010887:CDS 40.0%
AGAGTTATGTTCACCATCCA+TGG - chr7.2:53393547-53393566 None:intergenic 40.0%
ATGAATCTAGTTGGGGAGTT+AGG + chr7.2:53393439-53393458 MS.gene010887:CDS 40.0%
ATTGATGTCAGGGTTATTCG+GGG + chr7.2:53392835-53392854 MS.gene010887:CDS 40.0%
CATTGGATGTATCAACGATG+AGG + chr7.2:53393676-53393695 MS.gene010887:CDS 40.0%
GAACAAACACATTCGGAGTT+GGG - chr7.2:53393728-53393747 None:intergenic 40.0%
GAAGCTAGTATGCTTAAGAG+AGG + chr7.2:53393027-53393046 MS.gene010887:CDS 40.0%
GATTGATGTCAGGGTTATTC+GGG + chr7.2:53392834-53392853 MS.gene010887:CDS 40.0%
GGAGACTCTATTATCTACTC+TGG + chr7.2:53392739-53392758 MS.gene010887:CDS 40.0%
GGGAGATACTCAAATTGCAT+AGG - chr7.2:53393156-53393175 None:intergenic 40.0%
GTTCAAGGACAACCTAAGAT+GGG + chr7.2:53392988-53393007 MS.gene010887:CDS 40.0%
TATGAAGCAGGATCAGAAGT+TGG + chr7.2:53392771-53392790 MS.gene010887:CDS 40.0%
TCAAGACTAAGCTCTCTCAT+TGG - chr7.2:53393822-53393841 None:intergenic 40.0%
TCCAATGGGAAGGAGAATAT+TGG + chr7.2:53393093-53393112 MS.gene010887:CDS 40.0%
TCTATTATCTACTCTGGCCA+TGG + chr7.2:53392745-53392764 MS.gene010887:CDS 40.0%
TGAACAAACACATTCGGAGT+TGG - chr7.2:53393729-53393748 None:intergenic 40.0%
TGCGAAGGACAACTACAAAA+AGG - chr7.2:53393360-53393379 None:intergenic 40.0%
TGGGCTATGACTAATATAGC+TGG - chr7.2:53393709-53393728 None:intergenic 40.0%
TTGGATGTTTCCCCATCTTA+TGG + chr7.2:53393773-53393792 MS.gene010887:CDS 40.0%
! CTTTGAGGAAGCAAGAACAT+TGG - chr7.2:53393192-53393211 None:intergenic 40.0%
! GAATGTTCTGAATGCGTTGA+TGG + chr7.2:53393243-53393262 MS.gene010887:CDS 40.0%
! GCTACTTTGATGAACGATCA+TGG + chr7.2:53392505-53392524 MS.gene010887:CDS 40.0%
!! AGAGAGCTTAGTCTTGATCA+TGG + chr7.2:53393825-53393844 MS.gene010887:CDS 40.0%
!! AGAGCTTAGTCTTGATCATG+GGG + chr7.2:53393827-53393846 MS.gene010887:CDS 40.0%
!! GAGAGCTTAGTCTTGATCAT+GGG + chr7.2:53393826-53393845 MS.gene010887:CDS 40.0%
!! GCAAGCAGAAATTTTGACCA+TGG + chr7.2:53393527-53393546 MS.gene010887:CDS 40.0%
!! GCAGAAATTTTGACCATGGA+TGG + chr7.2:53393531-53393550 MS.gene010887:CDS 40.0%
AACATTGGAAATGCCGCCTT+CGG - chr7.2:53393177-53393196 None:intergenic 45.0%
ACTAGTGTGGTTGTGTCTGA+TGG + chr7.2:53392697-53392716 MS.gene010887:CDS 45.0%
AGACTAAGCTCTCTCATTGG+AGG - chr7.2:53393819-53393838 None:intergenic 45.0%
AGGATCATACTGCCCATCTT+AGG - chr7.2:53393003-53393022 None:intergenic 45.0%
ATTTGAGTATCTCCCGAAGG+CGG + chr7.2:53393161-53393180 MS.gene010887:CDS 45.0%
CACAACCACACTAGTAGCAA+TGG - chr7.2:53392692-53392711 None:intergenic 45.0%
CCAATACAAACACCAGGAAC+TGG - chr7.2:53392565-53392584 None:intergenic 45.0%
CCAGTTCCTGGTGTTTGTAT+TGG + chr7.2:53392562-53392581 MS.gene010887:CDS 45.0%
CTCCCTAGTCAAAACTAGTC+CGG - chr7.2:53393508-53393527 None:intergenic 45.0%
GACGACGAGGAAAAAGATGA+GGG + chr7.2:53393215-53393234 MS.gene010887:CDS 45.0%
GACTAAGCTCTCTCATTGGA+GGG - chr7.2:53393818-53393837 None:intergenic 45.0%
GATCCTGCTTCATATCACCA+TGG - chr7.2:53392765-53392784 None:intergenic 45.0%
GATGGGCAGTATGATCCTTA+AGG + chr7.2:53393005-53393024 MS.gene010887:CDS 45.0%
GCAATTTGAGTATCTCCCGA+AGG + chr7.2:53393158-53393177 MS.gene010887:CDS 45.0%
GCATACTTGTCACCATAGCA+AGG - chr7.2:53392807-53392826 None:intergenic 45.0%
GGAAGGAGAATATTGGTGTG+AGG + chr7.2:53393100-53393119 MS.gene010887:CDS 45.0%
GGTTCAAGGACAACCTAAGA+TGG + chr7.2:53392987-53393006 MS.gene010887:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG + chr7.2:53392626-53392645 MS.gene010887:CDS 45.0%
TAGTTGGGGAGTTAGGTCTT+TGG + chr7.2:53393446-53393465 MS.gene010887:CDS 45.0%
TCTTTGGACCCTATTCTAGC+TGG + chr7.2:53393462-53393481 MS.gene010887:CDS 45.0%
TGACGACGAGGAAAAAGATG+AGG + chr7.2:53393214-53393233 MS.gene010887:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG + chr7.2:53392625-53392644 MS.gene010887:CDS 45.0%
TTCCTCAAAGTATGACGACG+AGG + chr7.2:53393202-53393221 MS.gene010887:CDS 45.0%
TTCCTCGTCGTCATACTTTG+AGG - chr7.2:53393207-53393226 None:intergenic 45.0%
TTGATCATGGGGTAGAAGCT+GGG + chr7.2:53393838-53393857 MS.gene010887:CDS 45.0%
! ATTCGGGGTTTTCGGTATGA+AGG + chr7.2:53392850-53392869 MS.gene010887:CDS 45.0%
! GTTTGATTCGATTCGCGTGT+CGG + chr7.2:53392369-53392388 MS.gene010887:CDS 45.0%
! TCAGGGTTATTCGGGGTTTT+CGG + chr7.2:53392842-53392861 MS.gene010887:CDS 45.0%
! TTTGATTCGATTCGCGTGTC+GGG + chr7.2:53392370-53392389 MS.gene010887:CDS 45.0%
!! GTGGGATTCTTTTGAAAGGG+AGG + chr7.2:53393313-53393332 MS.gene010887:CDS 45.0%
!!! CACCGGACTAGTTTTGACTA+GGG + chr7.2:53393503-53393522 MS.gene010887:CDS 45.0%
!!! TCACCGGACTAGTTTTGACT+AGG + chr7.2:53393502-53393521 MS.gene010887:CDS 45.0%
ACACGGTTTCTGCAATGCGA+AGG - chr7.2:53393375-53393394 None:intergenic 50.0%
ACATTGGAAATGCCGCCTTC+GGG - chr7.2:53393176-53393195 None:intergenic 50.0%
ACGATGGTGCGCATTATGGA+AGG - chr7.2:53392187-53392206 None:intergenic 50.0%
ATAATGCGCACCATCGTTCC+AGG + chr7.2:53392190-53392209 MS.gene010887:CDS 50.0%
CAGGATCAGAAGTTGGAACG+AGG + chr7.2:53392778-53392797 MS.gene010887:CDS 50.0%
CGATGGTGCGCATTATGGAA+GGG - chr7.2:53392186-53392205 None:intergenic 50.0%
CTTGATCATGGGGTAGAAGC+TGG + chr7.2:53393837-53393856 MS.gene010887:CDS 50.0%
GAAGCTTAGAGGGCAGATCA+AGG + chr7.2:53392276-53392295 MS.gene010887:CDS 50.0%
GTGCGCATTATGGAAGGGTT+TGG - chr7.2:53392181-53392200 None:intergenic 50.0%
TACGACAGCAACACTCTGGA+GGG + chr7.2:53392232-53392251 MS.gene010887:CDS 50.0%
TGGAACGATGGTGCGCATTA+TGG - chr7.2:53392191-53392210 None:intergenic 50.0%
TGGCCATGGTGATATGAAGC+AGG + chr7.2:53392759-53392778 MS.gene010887:CDS 50.0%
TGTTCACACTGCGATGGATG+CGG + chr7.2:53392303-53392322 MS.gene010887:CDS 50.0%
TTACGACAGCAACACTCTGG+AGG + chr7.2:53392231-53392250 MS.gene010887:CDS 50.0%
! TTTTGTAACTCGTCGGGACC+TGG - chr7.2:53392211-53392230 None:intergenic 50.0%
CCACACTAGTAGCAATGGGC+TGG - chr7.2:53392687-53392706 None:intergenic 55.0%
CCAGCCCATTGCTACTAGTG+TGG + chr7.2:53392684-53392703 MS.gene010887:CDS 55.0%
CTCCGGACCATCTCACGATA+CGG - chr7.2:53392337-53392356 None:intergenic 55.0%
GGAACGAGGCAACCTTGCTA+TGG + chr7.2:53392792-53392811 MS.gene010887:CDS 55.0%
GGACCATCTCACGATACGGA+CGG - chr7.2:53392333-53392352 None:intergenic 55.0%
GTCCGTATCGTGAGATGGTC+CGG + chr7.2:53392332-53392351 MS.gene010887:CDS 55.0%
TCACCGTCCGTATCGTGAGA+TGG + chr7.2:53392327-53392346 MS.gene010887:CDS 55.0%
! CGGGGTTTTCGGTATGAAGG+TGG + chr7.2:53392853-53392872 MS.gene010887:CDS 55.0%
! GGAGCTTGTTCACACTGCGA+TGG + chr7.2:53392297-53392316 MS.gene010887:CDS 55.0%
GATTCGCGTGTCGGGTTTGC+TGG + chr7.2:53392378-53392397 MS.gene010887:CDS 60.0%
CTCGTCGGGACCTGGAACGA+TGG - chr7.2:53392203-53392222 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 53392163 53393863 53392163 ID=MS.gene010887
chr7.2 mRNA 53392163 53393863 53392163 ID=MS.gene010887.t1;Parent=MS.gene010887
chr7.2 exon 53392163 53393863 53392163 ID=MS.gene010887.t1.exon1;Parent=MS.gene010887.t1
chr7.2 CDS 53392163 53393863 53392163 ID=cds.MS.gene010887.t1;Parent=MS.gene010887.t1
Gene Sequence

>MS.gene010887

ATGAATTTTCAAGATCCAAACCCTTCCATAATGCGCACCATCGTTCCAGGTCCCGACGAGTTACAAAATTACGACAGCAACACTCTGGAGGGAAAAGCTTCAAAATCTAAGCAGAAGCTTAGAGGGCAGATCAAGGAGCTTGTTCACACTGCGATGGATGCGGATCACCGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATTTTGTTTGATTCGATTCGCGTGTCGGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAGAAGTATTTGAAAGCTTCTTCTTTGATAAACCAGACAGAAGAAGTGAATAATAGTAGGGTCCGAAATGACTTGATTGCTGCTACTTTGATGAACGATCATGGTATGTATTTGTATCATGATGTGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGCGAAATGTGTGTGATTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCAGCCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACTCTATTATCTACTCTGGCCATGGTGATATGAAGCAGGATCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTCAGGGTTATTCGGGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATGTTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTAAGTTATCAAGGGTTCAAGGACAACCTAAGATGGGCAGTATGATCCTTAAGGAAGCTAGTATGCTTAAGAGAGGCCAATTATGTGATAATCCTATGTATGTCCTTTCTGATGATATTTCCAATGGGAAGGAGAATATTGGTGTGAGGCTATATAATGACATTGATAGTGATCTCTATCCTATGCAATTTGAGTATCTCCCGAAGGCGGCATTTCCAATGTTCTTGCTTCCTCAAAGTATGACGACGAGGAAAAAGATGAGGGCGATAGAATGTTCTGAATGCGTTGATGGATGTGTTTCTTCAATCATGAATGGCAACACTACCCCTTATAGTAAAAGTGGGATTCTTTTGAAAGGGAGGTCGTTGATTTATGAATGCGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACACAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAATCTAGTTGGGGAGTTAGGTCTTTGGACCCTATTCTAGCTGGAACTTTTATATGTGAGTTCACCGGACTAGTTTTGACTAGGGAGCAAGCAGAAATTTTGACCATGGATGGTGAACATAACTCTTTGATTATATATCCAAATCGATTTTTGAATAGGTCTACTCAAGAATGGGGAGATTTGTCGATGATTGATGCTAATCATGTGCATCCCGCATATCCTACTTTCGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCGAATGTGTTTGTTCAATTAGTTCTCTTTGATCATGGTAATTGGATGTTTCCCCATCTTATGGTATTTGCAATGGAAAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGTAGAAGCTGGGTAG
Protein sequence

>MS.gene010887.t1

MNFQDPNPSIMRTIVPGPDELQNYDSNTLEGKASKSKQKLRGQIKELVHTAMDADHRPYREMVRRTRILFDSIRVSGLLEEENNRKNKKYLKASSLINQTEEVNNSRVRNDLIAATLMNDHGMYLYHDVKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGQPIATSVVVSDGYNDDDQGDSIIYSGHGDMKQDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKIIECWFEKGISGFGVYKFKLSRVQGQPKMGSMILKEASMLKRGQLCDNPMYVLSDDISNGKENIGVRLYNDIDSDLYPMQFEYLPKAAFPMFLLPQSMTTRKKMRAIECSECVDGCVSSIMNGNTTPYSKSGILLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNESSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSLIIYPNRFLNRSTQEWGDLSMIDANHVHPAYPTFDFALDVSTMRNVASYISHSPTPNVFVQLVLFDHGNWMFPHLMVFAMENIPPMRELSLDHGVEAG