AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010902

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010902.t1 MTR_7g050560 90.823 316 28 1 1 316 1 315 0.0 590
MS.gene010902.t1 MTR_7g050590 75.932 295 53 5 28 305 1 294 2.69e-158 444
MS.gene010902.t1 MTR_7g050580 66.767 331 79 6 1 316 1 315 1.07e-148 420
MS.gene010902.t1 MTR_3g098790 65.109 321 88 6 1 305 1 313 2.93e-142 404
MS.gene010902.t1 MTR_7g050710 65.325 323 92 6 1 305 1 321 4.98e-141 401
MS.gene010902.t1 MTR_7g050720 59.813 321 97 9 1 293 1 317 4.49e-125 360
MS.gene010902.t1 MTR_8g103940 37.255 306 156 6 11 291 37 331 5.97e-53 181
MS.gene010902.t1 MTR_1g035460 34.783 299 148 7 28 291 1 287 1.60e-47 164
MS.gene010902.t1 MTR_1g108780 33.447 293 150 7 29 291 13 290 5.34e-47 164
MS.gene010902.t1 MTR_7g050640 67.257 113 37 0 1 113 1 113 2.06e-46 153
MS.gene010902.t1 MTR_3g061370 35.172 290 163 7 11 290 7 281 3.71e-44 152
MS.gene010902.t1 MTR_3g061350 33.779 299 174 8 1 290 1 284 1.44e-42 148
MS.gene010902.t1 MTR_3g061320 35.117 299 148 11 10 290 9 279 1.66e-42 148
MS.gene010902.t1 MTR_5g044670 31.353 303 169 8 13 291 16 303 4.04e-42 148
MS.gene010902.t1 MTR_3g061340 32.765 293 158 10 10 290 9 274 1.28e-37 135
MS.gene010902.t1 MTR_3g061310 31.973 294 170 9 10 290 9 285 6.01e-37 134
MS.gene010902.t1 MTR_1g035640 34.146 287 162 11 13 289 9 278 2.98e-33 127
MS.gene010902.t1 MTR_3g005480 29.861 288 147 10 12 291 20 260 1.39e-31 119
MS.gene010902.t1 MTR_5g070440 27.891 294 167 7 5 291 13 268 1.56e-31 119
MS.gene010902.t1 MTR_6g043890 29.545 308 188 11 11 296 13 313 3.91e-31 119
MS.gene010902.t1 MTR_1g035620 30.033 303 168 10 10 294 6 282 5.00e-31 120
MS.gene010902.t1 MTR_3g061330 34.434 212 100 5 10 201 9 201 5.82e-31 117
MS.gene010902.t1 MTR_3g061290 52.941 102 46 1 10 111 9 108 8.99e-31 115
MS.gene010902.t1 MTR_1g050845 31.058 293 166 8 10 294 6 270 3.19e-30 121
MS.gene010902.t1 MTR_3g005490 27.797 295 157 9 5 291 13 259 6.72e-30 114
MS.gene010902.t1 MTR_4g119990 28.662 314 195 9 11 300 13 321 2.47e-29 115
MS.gene010902.t1 MTR_1g035570 31.271 291 162 10 22 291 14 287 4.14e-28 112
MS.gene010902.t1 MTR_6g061070 28.972 321 180 8 7 290 12 321 2.31e-27 111
MS.gene010902.t1 MTR_3g005420 27.402 281 171 6 12 291 288 536 1.02e-25 107
MS.gene010902.t1 MTR_3g005420 29.365 126 84 2 3 127 30 151 1.01e-14 75.1
MS.gene010902.t1 MTR_3g005460 27.431 288 170 8 11 290 260 516 5.51e-25 105
MS.gene010902.t1 MTR_3g005460 24.727 275 153 7 12 286 24 244 3.12e-19 88.6
MS.gene010902.t1 MTR_1g021360 27.875 287 187 9 11 283 182 462 1.24e-22 98.2
MS.gene010902.t1 MTR_3g061220 42.342 111 48 3 1 111 1 95 1.40e-22 91.3
MS.gene010902.t1 MTR_1g035480 37.589 141 76 3 9 149 13 141 5.18e-21 89.0
MS.gene010902.t1 MTR_1g035650 32.258 217 108 6 10 206 6 203 1.24e-20 88.6
MS.gene010902.t1 MTR_3g005495 27.473 273 147 6 12 282 242 465 3.54e-20 90.9
MS.gene010902.t1 MTR_3g005495 36.047 86 55 0 29 114 29 114 3.22e-16 79.3
MS.gene010902.t1 MTR_4g068320 40.000 105 61 1 13 115 6 110 7.01e-20 89.7
MS.gene010902.t1 MTR_4g068320 33.077 130 79 4 165 293 268 390 1.83e-13 70.9
MS.gene010902.t1 MTR_1g034240 39.394 99 60 0 13 111 7 105 2.01e-19 88.6
MS.gene010902.t1 MTR_1g034240 31.788 151 91 5 165 310 272 415 4.19e-14 72.8
MS.gene010902.t1 MTR_1g021410 25.305 328 191 10 11 290 21 342 3.24e-19 87.4
MS.gene010902.t1 MTR_1g021400 25.000 328 192 11 11 290 28 349 9.15e-18 83.2
MS.gene010902.t1 MTR_1g035500 34.194 155 88 4 7 161 19 159 1.24e-17 79.7
MS.gene010902.t1 MTR_1g035520 27.575 301 174 8 28 289 87 382 2.27e-17 82.4
MS.gene010902.t1 MTR_1g033740 34.043 141 80 3 9 149 18 145 3.81e-17 78.6
MS.gene010902.t1 MTR_1g035440 40.741 108 57 2 11 114 13 117 8.70e-17 79.0
MS.gene010902.t1 MTR_3g005440 29.661 118 78 1 27 139 34 151 8.47e-16 77.8
MS.gene010902.t1 MTR_3g005440 25.352 213 125 3 12 218 241 425 4.57e-14 72.8
MS.gene010902.t1 MTR_1g035510 36.923 130 66 4 28 157 1 114 1.53e-15 74.7
MS.gene010902.t1 MTR_1g034210 36.364 99 61 1 13 111 7 103 2.20e-15 75.9
MS.gene010902.t1 MTR_1g034210 36.364 99 61 1 13 111 7 103 3.68e-15 75.9
MS.gene010902.t1 MTR_1g021350 25.329 304 188 10 11 283 20 315 5.20e-15 75.1
MS.gene010902.t1 MTR_3g005420 29.365 126 84 2 3 127 11 132 1.13e-14 74.7
MS.gene010902.t1 MTR_1g035470 36.923 130 67 5 28 157 1 115 1.68e-13 67.0
MS.gene010902.t1 MTR_1g021380 29.944 177 95 3 12 184 16 167 3.07e-13 69.7
MS.gene010902.t1 MTR_1g021320 31.333 150 93 2 11 154 23 168 3.49e-13 70.5
MS.gene010902.t1 MTR_1g021320 26.452 155 109 3 11 162 182 334 2.39e-12 68.2
MS.gene010902.t1 MTR_1g021440 33.333 93 61 1 11 103 21 112 3.77e-12 66.2
MS.gene010902.t1 MTR_1g021440 33.333 93 61 1 11 103 21 112 4.24e-12 66.2
MS.gene010902.t1 MTR_1g021440 33.333 93 61 1 11 103 21 112 9.23e-12 65.5
MS.gene010902.t1 MTR_1g021440 33.333 93 61 1 11 103 21 112 9.58e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010902.t1 AT4G01580 40.870 115 68 0 2 116 19 133 2.05e-23 95.5
MS.gene010902.t1 AT3G18960 40.000 115 69 0 2 116 19 133 2.85e-22 92.8
MS.gene010902.t1 AT3G18960 40.000 115 69 0 2 116 19 133 3.79e-22 92.8
MS.gene010902.t1 AT1G49475 43.243 111 60 2 6 114 25 134 6.03e-22 91.7
MS.gene010902.t1 AT3G18990 43.434 99 56 0 13 111 6 104 1.84e-21 93.6
MS.gene010902.t1 AT3G18990 30.323 155 99 4 137 291 191 336 1.96e-13 70.5
MS.gene010902.t1 AT3G18990 43.434 99 56 0 13 111 6 104 2.44e-21 93.6
MS.gene010902.t1 AT3G18990 30.323 155 99 4 137 291 191 336 3.00e-13 70.1
MS.gene010902.t1 AT3G18960 45.455 88 48 0 29 116 9 96 9.63e-18 79.7
MS.gene010902.t1 AT1G49480 33.071 127 78 3 165 291 102 221 2.26e-14 71.6
MS.gene010902.t1 AT1G49480 33.071 127 78 3 165 291 102 221 2.26e-14 71.6
MS.gene010902.t1 AT1G49480 33.071 127 78 3 165 291 102 221 2.26e-14 71.6

Find 49 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTAAATGAAGGAATT+TGG 0.170862 7.2:+52938854 MS.gene010902:CDS
GATCAAAATGTGGTCCTTTA+AGG 0.186650 7.2:-52938903 None:intergenic
TGCAAAATGGAAATTAAATT+TGG 0.194062 7.2:+52937870 MS.gene010902:CDS
GGAACACCGATTTCTTATTA+TGG 0.238357 7.2:+52938382 MS.gene010902:CDS
TATTTCTCGACAAACTTTCT+TGG 0.256848 7.2:-52937802 None:intergenic
AGAAAGTTTGTCGAGAAATA+TGG 0.293086 7.2:+52937805 MS.gene010902:CDS
CTAATCAGGATGACCCTTAA+AGG 0.296784 7.2:+52938889 MS.gene010902:CDS
GAATGGATAATTTATCTCTA+AGG 0.305393 7.2:-52938031 None:intergenic
CCAAAGAGTTGCAGCTAAAA+AGG 0.311285 7.2:+52938053 MS.gene010902:CDS
TTCCATCAACCACGTGAAAT+AGG 0.327923 7.2:+52938117 MS.gene010902:CDS
AGACTCCAAATGGTGCAAAA+TGG 0.337543 7.2:+52937857 MS.gene010902:CDS
CTTTAAGGGTCATCCTGATT+AGG 0.351706 7.2:-52938888 None:intergenic
ATCCTGATTAGGTACTTTGC+AGG 0.384916 7.2:-52938877 None:intergenic
TGGTAATAGACACTTTGATT+TGG 0.391800 7.2:+52938807 MS.gene010902:CDS
GTTCATATCTTTAGAGAGAC+TGG 0.406682 7.2:+52939024 MS.gene010902:CDS
TTCCTATTTCACGTGGTTGA+TGG 0.411563 7.2:-52938119 None:intergenic
GTTTATTTGTTGTTAAATGA+AGG 0.421453 7.2:+52938847 MS.gene010902:CDS
GGCCTGCAAAGTACCTAATC+AGG 0.423211 7.2:+52938875 MS.gene010902:CDS
CAGAATATACCACGTTCGTT+TGG 0.431161 7.2:+52938787 MS.gene010902:intron
ATCAAAATGTGGTCCTTTAA+GGG 0.437280 7.2:-52938902 None:intergenic
AACTTACCATAATAAGAAAT+CGG 0.464762 7.2:-52938388 None:intergenic
GATATTTGAAAAGCAGAAGA+TGG 0.469802 7.2:-52937966 None:intergenic
TTAAATTTGGTAAATAGTGA+TGG 0.478699 7.2:+52937883 MS.gene010902:CDS
GAGAAGCTTCTTCTTTCACT+TGG 0.486869 7.2:-52939169 None:intergenic
TGAAGTTGAGAAATTGCAAA+AGG 0.487851 7.2:+52938155 MS.gene010902:CDS
AAGTGGATTGGCTTCACCTC+AGG 0.494267 7.2:-52937040 None:intergenic
ATATATCTAAAGACTCCAAA+TGG 0.494837 7.2:+52937847 MS.gene010902:CDS
AAGGACAATAACTTGAAAGT+TGG 0.499244 7.2:+52938952 MS.gene010902:CDS
TTAGCTGCAACTCTTTGGAA+TGG 0.508092 7.2:-52938048 None:intergenic
TCTAAAGATATGAACAATGA+AGG 0.545794 7.2:-52939016 None:intergenic
CGCATGACAACAACAAAGGA+TGG 0.548509 7.2:-52938347 None:intergenic
TGATCTCACAACTGGATGGA+AGG 0.549699 7.2:+52938921 MS.gene010902:CDS
CTTGCTCAAAATCTTCATGA+AGG 0.562390 7.2:+52937076 MS.gene010902:CDS
TTTGATTTGGATAAGAAGAG+AGG 0.576081 7.2:+52938820 MS.gene010902:CDS
CCACGTGAAATAGGAAGCAA+TGG 0.577300 7.2:+52938126 MS.gene010902:CDS
GAGCATCACTCTCTAGCTCA+TGG 0.577825 7.2:+52937943 MS.gene010902:CDS
TTTGTCGAGAAATATGGAGA+AGG 0.578412 7.2:+52937811 MS.gene010902:CDS
AGAAGCTTCTTCTTTCACTT+GGG 0.579559 7.2:-52939168 None:intergenic
GTAGCAACTTTGCATCATGC+TGG 0.604292 7.2:+52938177 MS.gene010902:CDS
CCATTGCTTCCTATTTCACG+TGG 0.606111 7.2:-52938126 None:intergenic
GTGAAAGAAGAAGCTTCTCA+AGG 0.611713 7.2:+52939173 MS.gene010902:CDS
TGGTTGATGGAATTCAAAAG+AGG 0.624709 7.2:-52938106 None:intergenic
TGGATGGAAGGCATTTGCAA+AGG 0.644602 7.2:+52938933 MS.gene010902:CDS
CATGGCTAGTGAAACTCCTG+AGG 0.673676 7.2:+52937024 None:intergenic
TGTCATGCGTGCATCATACG+TGG 0.677837 7.2:+52938361 MS.gene010902:CDS
TGCACGCATGACAACAACAA+AGG 0.693553 7.2:-52938351 None:intergenic
CCAGTTGTGAGATCAAAATG+TGG 0.701103 7.2:-52938913 None:intergenic
CATGCTGGCAGAGAGTCCAA+AGG 0.714363 7.2:+52938192 MS.gene010902:CDS
TGTCTATTACCAAACGAACG+TGG 0.725731 7.2:-52938796 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATCACATAAATGTTTAT+TGG + chr7.2:52938627-52938646 MS.gene010902:intron 15.0%
!! AAAAATTAGAAAGTTCTTGT+TGG - chr7.2:52938736-52938755 None:intergenic 20.0%
!! AACTTACCATAATAAGAAAT+CGG - chr7.2:52938391-52938410 None:intergenic 20.0%
!! AAGAAAAAAAAGGTTCAAAT+TGG - chr7.2:52937482-52937501 None:intergenic 20.0%
!! TATCTGATTGAATAATTGTT+AGG - chr7.2:52938608-52938627 None:intergenic 20.0%
!! TGCAAAATGGAAATTAAATT+TGG + chr7.2:52937870-52937889 MS.gene010902:CDS 20.0%
!! TTAAATTTGGTAAATAGTGA+TGG + chr7.2:52937883-52937902 MS.gene010902:CDS 20.0%
!!! AATTACTTAGTTTTCTAATC+AGG - chr7.2:52937693-52937712 None:intergenic 20.0%
!!! CATTTATCTTTTCTTTTGAT+TGG + chr7.2:52938764-52938783 MS.gene010902:intron 20.0%
!!! GTTTATTTGTTGTTAAATGA+AGG + chr7.2:52938847-52938866 MS.gene010902:CDS 20.0%
!!! TAAATAGTGATGGAAAAATA+TGG + chr7.2:52937893-52937912 MS.gene010902:CDS 20.0%
!!! TGTAATTAGAAATTCAAGTT+TGG + chr7.2:52937549-52937568 MS.gene010902:intron 20.0%
!!! TTTTCTGATAAATGTGATTT+AGG + chr7.2:52937712-52937731 MS.gene010902:intron 20.0%
!!! TTTTTAGTAAATAGACGAAA+TGG - chr7.2:52937432-52937451 None:intergenic 20.0%
! AAAAAAAATATGTCGCTACA+TGG + chr7.2:52937448-52937467 MS.gene010902:intron 25.0%
! AAATATGGTTTGAAAAAGGT+TGG + chr7.2:52937908-52937927 MS.gene010902:CDS 25.0%
! AATAAGAGAATCTAAGTCAA+AGG - chr7.2:52937114-52937133 None:intergenic 25.0%
! ATATATCTAAAGACTCCAAA+TGG + chr7.2:52937847-52937866 MS.gene010902:CDS 25.0%
! ATTATCTTGAAAAAGTGGAT+TGG - chr7.2:52937055-52937074 None:intergenic 25.0%
! ATTATTCAACATCTCAAAGT+AGG + chr7.2:52939061-52939080 MS.gene010902:intron 25.0%
! CAAGTATTATCTTGAAAAAG+TGG - chr7.2:52937060-52937079 None:intergenic 25.0%
! GAATGGATAATTTATCTCTA+AGG - chr7.2:52938034-52938053 None:intergenic 25.0%
! GGAAAAATATGGTTTGAAAA+AGG + chr7.2:52937904-52937923 MS.gene010902:CDS 25.0%
! TACTATCATGCATACTAATT+TGG + chr7.2:52937757-52937776 MS.gene010902:intron 25.0%
! TATTATGACACAAGATTTGT+TGG + chr7.2:52937237-52937256 MS.gene010902:intron 25.0%
! TCTAAAGATATGAACAATGA+AGG - chr7.2:52939019-52939038 None:intergenic 25.0%
! TGCAAAATTTGAACACAATA+AGG - chr7.2:52938258-52938277 None:intergenic 25.0%
! TGTTGTTAAATGAAGGAATT+TGG + chr7.2:52938854-52938873 MS.gene010902:CDS 25.0%
!! ACAAATATGCCGAAATTTTT+AGG + chr7.2:52937338-52937357 MS.gene010902:intron 25.0%
!! TATTGTGTTCAAATTTTGCA+GGG + chr7.2:52938258-52938277 MS.gene010902:intron 25.0%
!! TTATTGTGTTCAAATTTTGC+AGG + chr7.2:52938257-52938276 MS.gene010902:intron 25.0%
AAGGACAATAACTTGAAAGT+TGG + chr7.2:52938952-52938971 MS.gene010902:CDS 30.0%
AGAAAGTTTGTCGAGAAATA+TGG + chr7.2:52937805-52937824 MS.gene010902:CDS 30.0%
ATCAAAATGTGGTCCTTTAA+GGG - chr7.2:52938905-52938924 None:intergenic 30.0%
GACTCAATCTTATATACCTT+TGG - chr7.2:52938211-52938230 None:intergenic 30.0%
GATATTTGAAAAGCAGAAGA+TGG - chr7.2:52937969-52937988 None:intergenic 30.0%
GTTTCATTAGGCTACAAATT+TGG - chr7.2:52937605-52937624 None:intergenic 30.0%
TATTTCTCGACAAACTTTCT+TGG - chr7.2:52937805-52937824 None:intergenic 30.0%
TGAAGTTGAGAAATTGCAAA+AGG + chr7.2:52938155-52938174 MS.gene010902:CDS 30.0%
TGGTAATAGACACTTTGATT+TGG + chr7.2:52938807-52938826 MS.gene010902:CDS 30.0%
TTAGTTGAGATAGGACTTAT+GGG - chr7.2:52937319-52937338 None:intergenic 30.0%
TTGAGTTAGATTCTTTGTTC+AGG + chr7.2:52937149-52937168 MS.gene010902:intron 30.0%
TTGTAGCCTAATGAAACTAT+GGG + chr7.2:52937608-52937627 MS.gene010902:intron 30.0%
TTTCTTGCAAAACACATTAG+TGG - chr7.2:52937522-52937541 None:intergenic 30.0%
TTTGTAGCCTAATGAAACTA+TGG + chr7.2:52937607-52937626 MS.gene010902:intron 30.0%
! AATTTCCATTTTGCACCATT+TGG - chr7.2:52937865-52937884 None:intergenic 30.0%
! ACTAATGTGTTTTGCAAGAA+AGG + chr7.2:52937521-52937540 MS.gene010902:intron 30.0%
! ATTTGTTGGTCATAGTTTGT+GGG + chr7.2:52937251-52937270 MS.gene010902:intron 30.0%
! CTAATGTGTTTTGCAAGAAA+GGG + chr7.2:52937522-52937541 MS.gene010902:intron 30.0%
! GCATATTTGTTAGTTGAGAT+AGG - chr7.2:52937328-52937347 None:intergenic 30.0%
! TAATGTGTTTTGCAAGAAAG+GGG + chr7.2:52937523-52937542 MS.gene010902:intron 30.0%
!! TTTGATTTGGATAAGAAGAG+AGG + chr7.2:52938820-52938839 MS.gene010902:CDS 30.0%
!!! ATATGCCGAAATTTTTAGGT+CGG + chr7.2:52937342-52937361 MS.gene010902:intron 30.0%
AAAGAATTTCCCAGCTCAAA+TGG + chr7.2:52938577-52938596 MS.gene010902:intron 35.0%
AAGAACCAATTGGTATCAAC+GGG - chr7.2:52938551-52938570 None:intergenic 35.0%
AGAAGCTTCTTCTTTCACTT+GGG - chr7.2:52939171-52939190 None:intergenic 35.0%
CAAGAACCAATTGGTATCAA+CGG - chr7.2:52938552-52938571 None:intergenic 35.0%
CATAAACTCACACACATAAG+TGG - chr7.2:52937400-52937419 None:intergenic 35.0%
CTTGCTCAAAATCTTCATGA+AGG + chr7.2:52937076-52937095 MS.gene010902:CDS 35.0%
CTTTCTCAACAAGAACCAAT+TGG - chr7.2:52938561-52938580 None:intergenic 35.0%
GACATCCGACCTAAAAATTT+CGG - chr7.2:52937350-52937369 None:intergenic 35.0%
GATCAAAATGTGGTCCTTTA+AGG - chr7.2:52938906-52938925 None:intergenic 35.0%
GGTAAGTTGCAAAGAAAGTT+TGG + chr7.2:52938403-52938422 MS.gene010902:intron 35.0%
GTTAGTTGAGATAGGACTTA+TGG - chr7.2:52937320-52937339 None:intergenic 35.0%
TATTTCCCGTTGATACCAAT+TGG + chr7.2:52938543-52938562 MS.gene010902:intron 35.0%
TCATTAGGCTACAAATTTGG+TGG - chr7.2:52937602-52937621 None:intergenic 35.0%
TTTGTCGAGAAATATGGAGA+AGG + chr7.2:52937811-52937830 MS.gene010902:CDS 35.0%
! AGCTTTTCTCTTTTGACCAT+TGG - chr7.2:52938082-52938101 None:intergenic 35.0%
! GGTTGACTAGTGTTTTATGA+TGG + chr7.2:52937570-52937589 MS.gene010902:intron 35.0%
! GTTCATATCTTTAGAGAGAC+TGG + chr7.2:52939024-52939043 MS.gene010902:CDS 35.0%
!! ATTTTGATCTCACAACTGGA+TGG + chr7.2:52938917-52938936 MS.gene010902:CDS 35.0%
!! GATTTGTTGGTCATAGTTTG+TGG + chr7.2:52937250-52937269 MS.gene010902:intron 35.0%
!! GGAACACCGATTTCTTATTA+TGG + chr7.2:52938382-52938401 MS.gene010902:CDS 35.0%
!! TGGTTGATGGAATTCAAAAG+AGG - chr7.2:52938109-52938128 None:intergenic 35.0%
AAACTCACACACATAAGTGG+AGG - chr7.2:52937397-52937416 None:intergenic 40.0%
AATTTCCCAGCTCAAATGGA+GGG + chr7.2:52938581-52938600 MS.gene010902:intron 40.0%
AGACTCCAAATGGTGCAAAA+TGG + chr7.2:52937857-52937876 MS.gene010902:CDS 40.0%
ATCCTGATTAGGTACTTTGC+AGG - chr7.2:52938880-52938899 None:intergenic 40.0%
CAGAATATACCACGTTCGTT+TGG + chr7.2:52938787-52938806 MS.gene010902:intron 40.0%
CCAAAGAGTTGCAGCTAAAA+AGG + chr7.2:52938053-52938072 MS.gene010902:CDS 40.0%
CCAGTTGTGAGATCAAAATG+TGG - chr7.2:52938916-52938935 None:intergenic 40.0%
CTAATCAGGATGACCCTTAA+AGG + chr7.2:52938889-52938908 MS.gene010902:CDS 40.0%
GAGAAGCTTCTTCTTTCACT+TGG - chr7.2:52939172-52939191 None:intergenic 40.0%
GTAGCGACATAGATGAGTAA+AGG - chr7.2:52937292-52937311 None:intergenic 40.0%
GTGAAAGAAGAAGCTTCTCA+AGG + chr7.2:52939173-52939192 MS.gene010902:CDS 40.0%
TGCAGCCTGTTTACTCAATT+CGG + chr7.2:52937635-52937654 MS.gene010902:intron 40.0%
TGTCTATTACCAAACGAACG+TGG - chr7.2:52938799-52938818 None:intergenic 40.0%
TTCCATCAACCACGTGAAAT+AGG + chr7.2:52938117-52938136 MS.gene010902:CDS 40.0%
TTCCTATTTCACGTGGTTGA+TGG - chr7.2:52938122-52938141 None:intergenic 40.0%
! CTTTAAGGGTCATCCTGATT+AGG - chr7.2:52938891-52938910 None:intergenic 40.0%
! TTAGCTGCAACTCTTTGGAA+TGG - chr7.2:52938051-52938070 None:intergenic 40.0%
!! CCACATTTTGATCTCACAAC+TGG + chr7.2:52938913-52938932 MS.gene010902:CDS 40.0%
!!! CCTTTTTAGCTGCAACTCTT+TGG - chr7.2:52938056-52938075 None:intergenic 40.0%
AGCCTAATGAAACTATGGGC+TGG + chr7.2:52937612-52937631 MS.gene010902:intron 45.0%
CACCAGCCCATAGTTTCATT+AGG - chr7.2:52937617-52937636 None:intergenic 45.0%
CCACGTGAAATAGGAAGCAA+TGG + chr7.2:52938126-52938145 MS.gene010902:CDS 45.0%
CCATTGCTTCCTATTTCACG+TGG - chr7.2:52938129-52938148 None:intergenic 45.0%
CGCATGACAACAACAAAGGA+TGG - chr7.2:52938350-52938369 None:intergenic 45.0%
GAATTTCCCAGCTCAAATGG+AGG + chr7.2:52938580-52938599 MS.gene010902:intron 45.0%
GCAGCTAAAAAGGTCTCCAA+TGG + chr7.2:52938063-52938082 MS.gene010902:CDS 45.0%
GTAGCAACTTTGCATCATGC+TGG + chr7.2:52938177-52938196 MS.gene010902:CDS 45.0%
TGATCTCACAACTGGATGGA+AGG + chr7.2:52938921-52938940 MS.gene010902:CDS 45.0%
TGCACGCATGACAACAACAA+AGG - chr7.2:52938354-52938373 None:intergenic 45.0%
TTTACTCAATTCGGCCCACT+TGG + chr7.2:52937644-52937663 MS.gene010902:intron 45.0%
TTTAGGTCGGATGTCATGAC+CGG + chr7.2:52937355-52937374 MS.gene010902:intron 45.0%
! CTAACTTGTCCAAGCCAAGT+GGG - chr7.2:52937661-52937680 None:intergenic 45.0%
! CTATACGTATGCACTGACGA+AGG + chr7.2:52938435-52938454 MS.gene010902:intron 45.0%
!! ACACATAAGTGGAGGTGTCA+GGG - chr7.2:52937389-52937408 None:intergenic 45.0%
!! TGGATGGAAGGCATTTGCAA+AGG + chr7.2:52938933-52938952 MS.gene010902:CDS 45.0%
!! TTGGCTTGGACAAGTTAGGT+CGG + chr7.2:52937663-52937682 MS.gene010902:intron 45.0%
!! TAAAAAAATTAAGAAAAAAA+AGG - chr7.2:52937492-52937511 None:intergenic 5.0%
!! TATTAATAGATATATTATAA+TGG + chr7.2:52938652-52938671 MS.gene010902:intron 5.0%
!!! TTTTCTTAATTTTTTTATTT+TGG + chr7.2:52937495-52937514 MS.gene010902:intron 5.0%
GTGGGCCGAATTGAGTAAAC+AGG - chr7.2:52937643-52937662 None:intergenic 50.0%
TAGGACCCTCCATTTGAGCT+GGG - chr7.2:52938589-52938608 None:intergenic 50.0%
TGTCATGCGTGCATCATACG+TGG + chr7.2:52938361-52938380 MS.gene010902:CDS 50.0%
TTAGGACCCTCCATTTGAGC+TGG - chr7.2:52938590-52938609 None:intergenic 50.0%
TTAGGTCGGATGTCATGACC+GGG + chr7.2:52937356-52937375 MS.gene010902:intron 50.0%
! CCTAACTTGTCCAAGCCAAG+TGG - chr7.2:52937662-52937681 None:intergenic 50.0%
! GAGCATCACTCTCTAGCTCA+TGG + chr7.2:52937943-52937962 MS.gene010902:CDS 50.0%
! GGCCTGCAAAGTACCTAATC+AGG + chr7.2:52938875-52938894 MS.gene010902:CDS 50.0%
! TGGCTTGGACAAGTTAGGTC+GGG + chr7.2:52937664-52937683 MS.gene010902:intron 50.0%
!! AAGTGGATTGGCTTCACCTC+AGG - chr7.2:52937043-52937062 None:intergenic 50.0%
!! CACACATAAGTGGAGGTGTC+AGG - chr7.2:52937390-52937409 None:intergenic 50.0%
!! CCACTTGGCTTGGACAAGTT+AGG + chr7.2:52937659-52937678 MS.gene010902:intron 50.0%
CATGCTGGCAGAGAGTCCAA+AGG + chr7.2:52938192-52938211 MS.gene010902:CDS 55.0%
TAGGTCGGATGTCATGACCG+GGG + chr7.2:52937357-52937376 MS.gene010902:intron 55.0%
TCAATTCGGCCCACTTGGCT+TGG + chr7.2:52937649-52937668 MS.gene010902:intron 55.0%
AGGTGTCAGGGTTCGAACCC+CGG - chr7.2:52937377-52937396 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 52937025 52939199 52937025 ID=MS.gene010902
chr7.2 mRNA 52937025 52939199 52937025 ID=MS.gene010902.t1;Parent=MS.gene010902
chr7.2 exon 52937025 52937105 52937025 ID=MS.gene010902.t1.exon1;Parent=MS.gene010902.t1
chr7.2 CDS 52937025 52937105 52937025 ID=cds.MS.gene010902.t1;Parent=MS.gene010902.t1
chr7.2 exon 52937796 52938213 52937796 ID=MS.gene010902.t1.exon2;Parent=MS.gene010902.t1
chr7.2 CDS 52937796 52938213 52937796 ID=cds.MS.gene010902.t1;Parent=MS.gene010902.t1
chr7.2 exon 52938279 52938403 52938279 ID=MS.gene010902.t1.exon3;Parent=MS.gene010902.t1
chr7.2 CDS 52938279 52938403 52938279 ID=cds.MS.gene010902.t1;Parent=MS.gene010902.t1
chr7.2 exon 52938790 52939078 52938790 ID=MS.gene010902.t1.exon4;Parent=MS.gene010902.t1
chr7.2 CDS 52938790 52939078 52938790 ID=cds.MS.gene010902.t1;Parent=MS.gene010902.t1
chr7.2 exon 52939162 52939199 52939162 ID=MS.gene010902.t1.exon5;Parent=MS.gene010902.t1
chr7.2 CDS 52939162 52939199 52939162 ID=cds.MS.gene010902.t1;Parent=MS.gene010902.t1
Gene Sequence

>MS.gene010902

ATGGCTAGTGAAACTCCTGAGGTGAAGCCAATCCACTTTTTCAAGATAATACTTGCTCAAAATCTTCATGAAGGAAAGCTTGTAAGCCTTTGACTTAGATTCTCTTATTTTTCTTCTGATAATCTTGAGTTAGATTCTTTGTTCAGGTAGTTTTTATTGTTTGTATATCTAATAACATGATTACATTACTTTGTATTTTGCTTGCATGCTTTTATTATGACACAAGATTTGTTGGTCATAGTTTGTGGGTTAGTAGCATTATTACCTTTACTCATCTATGTCGCTACATGTCCCATAAGTCCTATCTCAACTAACAAATATGCCGAAATTTTTAGGTCGGATGTCATGACCGGGGTTCGAACCCTGACACCTCCACTTATGTGTGTGAGTTTATGATGACTTTGCCATTTCGTCTATTTACTAAAAAAAAATATGTCGCTACATGGCTTCATCGCCAATTTGAACCTTTTTTTTCTTAATTTTTTTATTTTGGTCCACTAATGTGTTTTGCAAGAAAGGGGACTTGTAATTAGAAATTCAAGTTTGGTTGACTAGTGTTTTATGATGGATTTGACCACCAAATTTGTAGCCTAATGAAACTATGGGCTGGTGCAGCCTGTTTACTCAATTCGGCCCACTTGGCTTGGACAAGTTAGGTCGGGCGTCCTGATTAGAAAACTAAGTAATTTTTCTGATAAATGTGATTTAGGAGTCTCACGTTACTTAAAAAAGTACTATCATGCATACTAATTTGGTTTAATTAATCGATAGATGATGCCAAGAAAGTTTGTCGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGCAAAATGGAAATTAAATTTGGTAAATAGTGATGGAAAAATATGGTTTGAAAAAGGTTGGAAAGAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTCAAATATCTAAGAAGTTCTCGTTTTCTTGTGCGCATCTTTGAAAAGAGTGCCTTAGAGATAAATTATCCATTCCAAAGAGTTGCAGCTAAAAAGGTCTCCAATGGTCAAAAGAGAAAAGCTAACTCCTCTTTTGAATTCCATCAACCACGTGAAATAGGAAGCAATGGTTGTGTTGAAGTTGAGAAATTGCAAAAGGTAGCAACTTTGCATCATGCTGGCAGAGAGTCCAAAGGTATATAAGATTGAGTCTTCATTGTCTCATCAAAGTTTCAGCCTTATTGTGTTCAAATTTTGCAGGGAAACAAGTGCTTACTTCTAAGAGAGTAACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTGGAACACCGATTTCTTATTATGGTAAGTTGCAAAGAAAGTTTGGTTGCTAGAACTATACGTATGCACTGACGAAGGATAAATTTTAATACGTTTTGTGACTCGTTAATACATATTTTCTGATCATGATCAATACATAGTTTATGATTTCTTTCTCTTTTCATATTTCCCGTTGATACCAATTGGTTCTTGTTGAGAAAGAATTTCCCAGCTCAAATGGAGGGTCCTAACAATTATTCAATCAGATATTATCACATAAATGTTTATTGGAATATTAATAGATATATTATAATGGCAGTGATATTATGATTAGATTAGATAACTACGTAAGAAAATACACAATGTTAAGTACTCCAACAAGAACTTTCTAATTTTTATTCATAACATTTATCTTTTCTTTTGATTGGCAGAATATACCACGTTCGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATGTTTATTTGTTGTTAAATGAAGGAATTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTAAAGGACCACATTTTGATCTCACAACTGGATGGAAGGCATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTTGAGCTCATCTCTAGCACTACACTTACCTTCATTGTTCATATCTTTAGAGAGACTGGCAATGTCAACACAAATTATTCAACATCTCAAAGTAGGATTAATTGATGTTTAGTTTTCATTTCAAATATTTTATATTTTTCATATGACAAATAAATTTATTGTTCTCTTATGCAGACTCTTCCCAAGTGAAAGAAGAAGCTTCTCAAGGATAA
Protein sequence

>MS.gene010902.t1

MASETPEVKPIHFFKIILAQNLHEGKLMMPRKFVEKYGEGLSNAIYLKTPNGAKWKLNLVNSDGKIWFEKGWKEFAEHHSLAHGHLLLFKYLRSSRFLVRIFEKSALEINYPFQRVAAKKVSNGQKRKANSSFEFHQPREIGSNGCVEVEKLQKVATLHHAGRESKGKQVLTSKRVTALERAQSFKTCNPSFVVVMRASYVEHRFLIMNIPRSFGNRHFDLDKKRGDVYLLLNEGIWPAKYLIRMTLKGPHFDLTTGWKAFAKDNNLKVGDVCKFELISSTTLTFIVHIFRETGNVNTNYSTSQNSSQVKEEASQG