Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010928.t1 | XP_003622663.1 | 88.2 | 314 | 31 | 1 | 3 | 310 | 2 | 315 | 3.30E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010928.t1 | Q8L3W1 | 28.9 | 339 | 166 | 5 | 14 | 285 | 6 | 336 | 1.4e-29 | 131.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010928.t1 | G7KVV4 | 88.2 | 314 | 31 | 1 | 3 | 310 | 2 | 315 | 2.3e-155 | 557.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010928.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010928.t1 | MTR_7g050560 | 88.608 | 316 | 29 | 2 | 1 | 310 | 1 | 315 | 0.0 | 568 |
| MS.gene010928.t1 | MTR_7g050590 | 75.427 | 293 | 49 | 3 | 29 | 298 | 1 | 293 | 7.43e-158 | 442 |
| MS.gene010928.t1 | MTR_7g050580 | 67.976 | 331 | 69 | 6 | 1 | 310 | 1 | 315 | 4.05e-152 | 429 |
| MS.gene010928.t1 | MTR_3g098790 | 66.352 | 318 | 78 | 5 | 3 | 298 | 2 | 312 | 4.98e-145 | 411 |
| MS.gene010928.t1 | MTR_7g050710 | 66.149 | 322 | 83 | 6 | 1 | 298 | 1 | 320 | 8.25e-143 | 405 |
| MS.gene010928.t1 | MTR_7g050720 | 62.102 | 314 | 85 | 7 | 8 | 287 | 4 | 317 | 3.05e-128 | 369 |
| MS.gene010928.t1 | MTR_8g103940 | 37.377 | 305 | 150 | 6 | 12 | 285 | 37 | 331 | 9.49e-55 | 186 |
| MS.gene010928.t1 | MTR_1g108780 | 35.069 | 288 | 145 | 7 | 30 | 285 | 13 | 290 | 5.98e-50 | 172 |
| MS.gene010928.t1 | MTR_1g035460 | 34.462 | 325 | 156 | 9 | 29 | 307 | 1 | 314 | 1.39e-48 | 167 |
| MS.gene010928.t1 | MTR_7g050640 | 68.750 | 112 | 35 | 0 | 3 | 114 | 2 | 113 | 2.15e-47 | 155 |
| MS.gene010928.t1 | MTR_5g044670 | 33.333 | 303 | 170 | 8 | 14 | 292 | 16 | 310 | 9.63e-44 | 152 |
| MS.gene010928.t1 | MTR_3g061370 | 35.374 | 294 | 150 | 10 | 12 | 284 | 7 | 281 | 6.07e-43 | 149 |
| MS.gene010928.t1 | MTR_3g061320 | 34.343 | 297 | 146 | 10 | 11 | 284 | 9 | 279 | 9.60e-43 | 148 |
| MS.gene010928.t1 | MTR_3g061350 | 33.224 | 304 | 163 | 10 | 1 | 284 | 1 | 284 | 5.31e-42 | 147 |
| MS.gene010928.t1 | MTR_3g061340 | 32.632 | 285 | 162 | 9 | 11 | 284 | 9 | 274 | 1.65e-37 | 135 |
| MS.gene010928.t1 | MTR_3g061310 | 31.359 | 287 | 174 | 8 | 11 | 284 | 9 | 285 | 4.67e-35 | 129 |
| MS.gene010928.t1 | MTR_1g035620 | 31.271 | 291 | 163 | 9 | 11 | 283 | 6 | 277 | 6.96e-35 | 131 |
| MS.gene010928.t1 | MTR_5g070440 | 27.835 | 291 | 170 | 7 | 6 | 288 | 13 | 271 | 1.51e-33 | 124 |
| MS.gene010928.t1 | MTR_6g043890 | 32.281 | 285 | 162 | 8 | 12 | 271 | 13 | 291 | 8.60e-33 | 124 |
| MS.gene010928.t1 | MTR_3g061330 | 32.787 | 244 | 131 | 7 | 11 | 236 | 9 | 237 | 1.41e-32 | 121 |
| MS.gene010928.t1 | MTR_1g050845 | 31.359 | 287 | 156 | 6 | 11 | 283 | 6 | 265 | 1.62e-32 | 127 |
| MS.gene010928.t1 | MTR_3g005480 | 28.070 | 285 | 155 | 7 | 13 | 288 | 20 | 263 | 1.80e-32 | 121 |
| MS.gene010928.t1 | MTR_1g035640 | 33.333 | 282 | 164 | 9 | 14 | 283 | 9 | 278 | 4.13e-32 | 124 |
| MS.gene010928.t1 | MTR_3g005490 | 27.055 | 292 | 162 | 6 | 6 | 288 | 13 | 262 | 2.27e-31 | 118 |
| MS.gene010928.t1 | MTR_4g119990 | 29.934 | 304 | 177 | 7 | 12 | 284 | 13 | 311 | 2.87e-30 | 118 |
| MS.gene010928.t1 | MTR_3g061290 | 52.941 | 102 | 46 | 1 | 11 | 112 | 9 | 108 | 3.30e-30 | 114 |
| MS.gene010928.t1 | MTR_6g061070 | 29.560 | 318 | 175 | 10 | 8 | 284 | 12 | 321 | 5.37e-29 | 115 |
| MS.gene010928.t1 | MTR_1g035570 | 30.714 | 280 | 171 | 6 | 23 | 285 | 14 | 287 | 1.56e-28 | 114 |
| MS.gene010928.t1 | MTR_3g005460 | 27.273 | 297 | 180 | 9 | 1 | 288 | 251 | 520 | 6.23e-26 | 107 |
| MS.gene010928.t1 | MTR_3g005460 | 24.549 | 277 | 144 | 6 | 13 | 280 | 24 | 244 | 5.29e-20 | 90.5 |
| MS.gene010928.t1 | MTR_3g005420 | 28.374 | 289 | 179 | 6 | 1 | 288 | 278 | 539 | 1.60e-25 | 106 |
| MS.gene010928.t1 | MTR_3g005420 | 24.254 | 268 | 154 | 7 | 7 | 272 | 33 | 253 | 6.39e-16 | 78.6 |
| MS.gene010928.t1 | MTR_1g021360 | 29.181 | 281 | 174 | 9 | 12 | 272 | 182 | 457 | 2.35e-22 | 97.1 |
| MS.gene010928.t1 | MTR_1g034240 | 37.500 | 120 | 72 | 1 | 14 | 133 | 7 | 123 | 4.03e-22 | 96.3 |
| MS.gene010928.t1 | MTR_1g034240 | 32.667 | 150 | 90 | 5 | 160 | 304 | 272 | 415 | 6.98e-13 | 68.9 |
| MS.gene010928.t1 | MTR_1g035480 | 34.239 | 184 | 106 | 6 | 10 | 192 | 13 | 182 | 6.79e-22 | 91.3 |
| MS.gene010928.t1 | MTR_4g068320 | 41.905 | 105 | 59 | 1 | 14 | 116 | 6 | 110 | 1.03e-21 | 95.1 |
| MS.gene010928.t1 | MTR_4g068320 | 29.944 | 177 | 106 | 5 | 115 | 290 | 234 | 393 | 1.83e-13 | 70.9 |
| MS.gene010928.t1 | MTR_3g061220 | 43.137 | 102 | 43 | 2 | 11 | 112 | 9 | 95 | 4.34e-21 | 87.0 |
| MS.gene010928.t1 | MTR_3g005495 | 30.916 | 262 | 137 | 9 | 13 | 272 | 242 | 461 | 2.24e-20 | 91.3 |
| MS.gene010928.t1 | MTR_3g005495 | 37.209 | 86 | 54 | 0 | 30 | 115 | 29 | 114 | 1.54e-16 | 80.1 |
| MS.gene010928.t1 | MTR_1g035650 | 30.734 | 218 | 104 | 5 | 11 | 201 | 6 | 203 | 1.81e-19 | 85.1 |
| MS.gene010928.t1 | MTR_1g035440 | 43.810 | 105 | 58 | 1 | 12 | 115 | 13 | 117 | 2.67e-18 | 82.8 |
| MS.gene010928.t1 | MTR_1g035500 | 35.570 | 149 | 88 | 4 | 8 | 156 | 19 | 159 | 2.80e-18 | 81.6 |
| MS.gene010928.t1 | MTR_1g021400 | 23.410 | 346 | 206 | 9 | 12 | 303 | 28 | 368 | 4.52e-18 | 84.0 |
| MS.gene010928.t1 | MTR_1g033740 | 35.556 | 135 | 80 | 3 | 10 | 144 | 18 | 145 | 2.88e-17 | 79.0 |
| MS.gene010928.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 14 | 112 | 7 | 103 | 4.22e-17 | 80.9 |
| MS.gene010928.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 14 | 112 | 7 | 103 | 5.95e-17 | 80.9 |
| MS.gene010928.t1 | MTR_1g035510 | 37.903 | 124 | 67 | 4 | 29 | 152 | 1 | 114 | 3.28e-16 | 76.6 |
| MS.gene010928.t1 | MTR_3g005440 | 35.227 | 88 | 57 | 0 | 28 | 115 | 34 | 121 | 4.40e-16 | 78.6 |
| MS.gene010928.t1 | MTR_3g005440 | 27.179 | 195 | 125 | 3 | 13 | 206 | 241 | 419 | 3.12e-14 | 73.2 |
| MS.gene010928.t1 | MTR_3g005420 | 24.254 | 268 | 154 | 7 | 7 | 272 | 14 | 234 | 6.10e-16 | 78.6 |
| MS.gene010928.t1 | MTR_1g035520 | 26.885 | 305 | 164 | 9 | 29 | 283 | 87 | 382 | 1.15e-15 | 77.0 |
| MS.gene010928.t1 | MTR_1g035470 | 37.903 | 124 | 68 | 5 | 29 | 152 | 1 | 115 | 3.23e-14 | 68.9 |
| MS.gene010928.t1 | MTR_1g021380 | 30.409 | 171 | 96 | 2 | 13 | 179 | 16 | 167 | 7.35e-14 | 71.6 |
| MS.gene010928.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 9.13e-14 | 70.9 |
| MS.gene010928.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 1.45e-13 | 70.5 |
| MS.gene010928.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 2.60e-13 | 70.1 |
| MS.gene010928.t1 | MTR_1g021440 | 28.313 | 166 | 104 | 5 | 12 | 174 | 21 | 174 | 3.56e-13 | 69.7 |
| MS.gene010928.t1 | MTR_1g021320 | 26.531 | 196 | 111 | 6 | 12 | 178 | 182 | 373 | 5.46e-12 | 67.0 |
| MS.gene010928.t1 | MTR_1g021320 | 30.137 | 146 | 91 | 2 | 12 | 146 | 23 | 168 | 3.22e-11 | 64.7 |
| MS.gene010928.t1 | MTR_1g021270 | 29.213 | 178 | 109 | 6 | 123 | 294 | 191 | 357 | 1.84e-11 | 65.1 |
| MS.gene010928.t1 | MTR_1g021270 | 30.189 | 106 | 73 | 1 | 9 | 114 | 11 | 115 | 3.64e-11 | 64.3 |
| MS.gene010928.t1 | MTR_1g021290 | 32.979 | 94 | 62 | 1 | 15 | 108 | 157 | 249 | 7.74e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010928.t1 | AT3G18990 | 28.070 | 342 | 171 | 5 | 14 | 288 | 6 | 339 | 2.47e-35 | 131 |
| MS.gene010928.t1 | AT3G18990 | 27.353 | 340 | 170 | 7 | 14 | 285 | 6 | 336 | 1.32e-29 | 115 |
| MS.gene010928.t1 | AT4G01580 | 41.739 | 115 | 67 | 0 | 3 | 117 | 19 | 133 | 2.11e-24 | 98.2 |
| MS.gene010928.t1 | AT3G18960 | 40.870 | 115 | 68 | 0 | 3 | 117 | 19 | 133 | 4.22e-23 | 94.7 |
| MS.gene010928.t1 | AT3G18960 | 40.870 | 115 | 68 | 0 | 3 | 117 | 19 | 133 | 5.96e-23 | 94.7 |
| MS.gene010928.t1 | AT1G49475 | 42.342 | 111 | 61 | 2 | 7 | 115 | 25 | 134 | 5.24e-22 | 91.7 |
| MS.gene010928.t1 | AT4G33280 | 25.879 | 313 | 193 | 12 | 12 | 293 | 23 | 327 | 3.17e-19 | 87.0 |
| MS.gene010928.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 30 | 117 | 9 | 96 | 3.09e-18 | 80.9 |
| MS.gene010928.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 133 | 285 | 77 | 221 | 1.24e-13 | 69.3 |
| MS.gene010928.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 133 | 285 | 77 | 221 | 1.24e-13 | 69.3 |
| MS.gene010928.t1 | AT1G49480 | 30.065 | 153 | 99 | 3 | 133 | 285 | 77 | 221 | 1.24e-13 | 69.3 |
Find 46 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7.1:-52198023 | MS.gene010928:CDS |
| GATCAAACTGTAGTCCTTTA+AGG | 0.189876 | 7.1:+52197974 | None:intergenic |
| TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.1:-52199429 | MS.gene010928:CDS |
| TTCCATCAACCACGTGAAAT+TGG | 0.227140 | 7.1:-52199200 | MS.gene010928:CDS |
| TATTTCTCTACAAACTTTCT+TGG | 0.243867 | 7.1:+52199497 | None:intergenic |
| CTAATCAGGATGACCCTTAA+AGG | 0.288761 | 7.1:-52197988 | MS.gene010928:CDS |
| CGTGGAACACCGATTTCTTA+TGG | 0.302917 | 7.1:-52198717 | MS.gene010928:intron |
| GAATGGATAATTTATCTCTA+AGG | 0.305393 | 7.1:+52199268 | None:intergenic |
| AGAAAGTTTGTAGAGAAATA+TGG | 0.315950 | 7.1:-52199494 | MS.gene010928:CDS |
| AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7.1:-52199442 | MS.gene010928:CDS |
| CTTTAAGGGTCATCCTGATT+AGG | 0.346771 | 7.1:+52197989 | None:intergenic |
| CAGAATATACCAGTTAAGTT+TGG | 0.352430 | 7.1:-52198090 | MS.gene010928:CDS |
| TGAAGTTGAGAAATTGAATA+AGG | 0.355428 | 7.1:-52199162 | MS.gene010928:CDS |
| ATCCTGATTAGGTACTTTGC+AGG | 0.384916 | 7.1:+52198000 | None:intergenic |
| TGGTAAGACACACTTTGATT+TGG | 0.385393 | 7.1:-52198070 | MS.gene010928:CDS |
| TTCCAATTTCACGTGGTTGA+TGG | 0.401701 | 7.1:+52199198 | None:intergenic |
| TGTGTCTTACCAAACTTAAC+TGG | 0.416239 | 7.1:+52198081 | None:intergenic |
| ATTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7.1:-52198030 | MS.gene010928:CDS |
| GGCCTGCAAAGTACCTAATC+AGG | 0.423211 | 7.1:-52198002 | MS.gene010928:CDS |
| TGCAACTTACCATAAGAAAT+CGG | 0.439757 | 7.1:+52198708 | None:intergenic |
| CTACAGTTTGATCTCACAAC+TGG | 0.442831 | 7.1:-52197964 | MS.gene010928:CDS |
| ATCAAACTGTAGTCCTTTAA+GGG | 0.460291 | 7.1:+52197975 | None:intergenic |
| GATATTTGAAAAGCAGAAGA+TGG | 0.469802 | 7.1:+52199333 | None:intergenic |
| GAGAAGCTTCTTCTTTCACT+TGG | 0.486869 | 7.1:+52197703 | None:intergenic |
| AAATGGATTGGCTTCACCTC+AGG | 0.494267 | 7.1:+52200390 | None:intergenic |
| ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.1:-52199452 | MS.gene010928:CDS |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.1:-52197925 | MS.gene010928:CDS |
| TTAGCTGCAACTCTTTGGAA+TGG | 0.508092 | 7.1:+52199251 | None:intergenic |
| TCTAAAGATGTGAACAATGA+AGG | 0.509907 | 7.1:+52197861 | None:intergenic |
| TTTGTAGAGAAATATGGAGA+AGG | 0.519534 | 7.1:-52199488 | MS.gene010928:CDS |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.1:+52198749 | None:intergenic |
| AGAAGCTTCTTCTTTCACTT+GGG | 0.559960 | 7.1:+52197704 | None:intergenic |
| CTTGCTCAAAATCTTCATGA+AGG | 0.562390 | 7.1:-52200354 | MS.gene010928:CDS |
| TGATCTCACAACTGGATGGA+AGG | 0.573601 | 7.1:-52197956 | MS.gene010928:CDS |
| TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7.1:-52198057 | MS.gene010928:CDS |
| GATCATCACTCTCTAGCTCA+TGG | 0.584001 | 7.1:-52199356 | MS.gene010928:CDS |
| AGTTTGATCTCACAACTGGA+TGG | 0.597924 | 7.1:-52197960 | MS.gene010928:CDS |
| GTAGCAACTTTGCATCATGC+TGG | 0.604292 | 7.1:-52199140 | MS.gene010928:CDS |
| GTGAAAGAAGAAGCTTCTCA+AGG | 0.611713 | 7.1:-52197699 | MS.gene010928:CDS |
| CTATTGCTTCCAATTTCACG+TGG | 0.616486 | 7.1:+52199191 | None:intergenic |
| TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7.1:+52199211 | None:intergenic |
| TGGATGGAAGGCATTTGCAA+AGG | 0.644602 | 7.1:-52197944 | MS.gene010928:CDS |
| TGTCATGCGTGCATCATACG+TGG | 0.677837 | 7.1:-52198735 | MS.gene010928:CDS |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7.1:+52198745 | None:intergenic |
| CATGCTGGCAGAGAGTGCAA+AGG | 0.694988 | 7.1:-52199125 | MS.gene010928:intron |
| GGCTAGTGATGAAACTCCTG+AGG | 0.700961 | 7.1:-52200406 | MS.gene010928:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTTTAAAATAAAAAATTA+AGG | + | chr7.1:52198154-52198173 | None:intergenic | 10.0% |
| !! | ATATTATCACAAATGTTTAT+TGG | - | chr7.1:52199852-52199871 | MS.gene010928:intron | 15.0% |
| !!! | ATTTATTTGTTGTTAAATGA+AGG | - | chr7.1:52200073-52200092 | MS.gene010928:intron | 15.0% |
| !!! | CTTTGATAATAATAATTCTT+AGG | + | chr7.1:52199617-52199636 | None:intergenic | 15.0% |
| !! | AAAAATTAGAAAGTTCTTGT+TGG | + | chr7.1:52199961-52199980 | None:intergenic | 20.0% |
| !! | AATAATAATTCTTAGGAGTT+AGG | + | chr7.1:52199610-52199629 | None:intergenic | 20.0% |
| !! | ATAATTAAGAAAAATGCACA+TGG | - | chr7.1:52198277-52198296 | MS.gene010928:intron | 20.0% |
| !! | ATTATCTTGAAAAAATGGAT+TGG | + | chr7.1:52197728-52197747 | None:intergenic | 20.0% |
| !! | CAAGTATTATCTTGAAAAAA+TGG | + | chr7.1:52197733-52197752 | None:intergenic | 20.0% |
| !! | TAAGGAAAAAAAGTTCAAAT+TGG | + | chr7.1:52198136-52198155 | None:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.1:52198674-52198693 | MS.gene010928:intron | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.1:52198687-52198706 | MS.gene010928:intron | 20.0% |
| !!! | AATTACTTAGTTTTCTAATC+AGG | + | chr7.1:52198497-52198516 | None:intergenic | 20.0% |
| !!! | ACAAATTTTTTTCCTCAAAA+GGG | - | chr7.1:52198328-52198347 | MS.gene010928:intron | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | - | chr7.1:52198697-52198716 | MS.gene010928:intron | 20.0% |
| !!! | TTTTCTGATAAATGTGATTT+AGG | - | chr7.1:52198516-52198535 | MS.gene010928:intron | 20.0% |
| ! | AAAAAAAAAATGTCGCTACA+TGG | - | chr7.1:52198102-52198121 | MS.gene010928:intron | 25.0% |
| ! | AAACAAAATGAACGAAATGA+TGG | - | chr7.1:52199637-52199656 | MS.gene010928:intron | 25.0% |
| ! | AAATATGGTTTGAAAAAGGT+TGG | - | chr7.1:52198712-52198731 | MS.gene010928:intron | 25.0% |
| ! | AGAAAGTTTGTAGAGAAATA+TGG | - | chr7.1:52198609-52198628 | MS.gene010928:intron | 25.0% |
| ! | ATATAAATGCTATCTAACAG+GGG | - | chr7.1:52198250-52198269 | MS.gene010928:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.1:52198651-52198670 | MS.gene010928:intron | 25.0% |
| ! | GAATGGATAATTTATCTCTA+AGG | + | chr7.1:52198838-52198857 | None:intergenic | 25.0% |
| ! | GATATAAATGCTATCTAACA+GGG | - | chr7.1:52198249-52198268 | MS.gene010928:intron | 25.0% |
| ! | GGAAAAATATGGTTTGAAAA+AGG | - | chr7.1:52198708-52198727 | MS.gene010928:intron | 25.0% |
| ! | TACTATCATGCATACTAATT+TGG | - | chr7.1:52198561-52198580 | MS.gene010928:intron | 25.0% |
| ! | TATTATGACACAAGATTTGT+TGG | - | chr7.1:52197891-52197910 | MS.gene010928:CDS | 25.0% |
| ! | TATTTCTCTACAAACTTTCT+TGG | + | chr7.1:52198609-52198628 | None:intergenic | 25.0% |
| ! | TGAAGTTGAGAAATTGAATA+AGG | - | chr7.1:52198941-52198960 | MS.gene010928:intron | 25.0% |
| ! | TGATATAAATGCTATCTAAC+AGG | - | chr7.1:52198248-52198267 | MS.gene010928:intron | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7.1:52199265-52199284 | None:intergenic | 25.0% |
| ! | TGCATATGAGCTTATATTTA+GGG | - | chr7.1:52198305-52198324 | MS.gene010928:intron | 25.0% |
| ! | TGTAAATAAAAAGTCGAGTT+TGG | - | chr7.1:52198355-52198374 | MS.gene010928:intron | 25.0% |
| ! | TGTTGTTAAATGAAGGAATT+TGG | - | chr7.1:52200080-52200099 | MS.gene010928:intron | 25.0% |
| ! | TTATTTGTGATTGGACTTAT+AGG | + | chr7.1:52197973-52197992 | None:intergenic | 25.0% |
| !! | TATTGTGTTCAAATTTTGCA+GGG | - | chr7.1:52199265-52199284 | MS.gene010928:CDS | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.1:52199264-52199283 | MS.gene010928:CDS | 25.0% |
| !!! | CAAATTTTTTTCCTCAAAAG+GGG | - | chr7.1:52198329-52198348 | MS.gene010928:intron | 25.0% |
| !!! | GACAAATTTTTTTCCTCAAA+AGG | - | chr7.1:52198327-52198346 | MS.gene010928:intron | 25.0% |
| !!! | GCATATTTGTTATTTGTGAT+TGG | + | chr7.1:52197982-52198001 | None:intergenic | 25.0% |
| AAACCAGCAAGTAATTAACT+TGG | - | chr7.1:52198174-52198193 | MS.gene010928:intron | 30.0% | |
| AACCAGCAAGTAATTAACTT+GGG | - | chr7.1:52198175-52198194 | MS.gene010928:intron | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | - | chr7.1:52200178-52200197 | MS.gene010928:intron | 30.0% | |
| ACAAATATGCCGAAATTGTT+AGG | - | chr7.1:52197992-52198011 | MS.gene010928:CDS | 30.0% | |
| ATCAAACTGTAGTCCTTTAA+GGG | + | chr7.1:52200131-52200150 | None:intergenic | 30.0% | |
| ATTGTTCTACATCTCAAAGT+AGG | - | chr7.1:52200287-52200306 | MS.gene010928:intron | 30.0% | |
| CAGAATATACCAGTTAAGTT+TGG | - | chr7.1:52200013-52200032 | MS.gene010928:intron | 30.0% | |
| CTAGTCCATCATAAAATTAG+TGG | + | chr7.1:52198382-52198401 | None:intergenic | 30.0% | |
| CTGCATATGAGCTTATATTT+AGG | - | chr7.1:52198304-52198323 | MS.gene010928:intron | 30.0% | |
| GATATTTGAAAAGCAGAAGA+TGG | + | chr7.1:52198773-52198792 | None:intergenic | 30.0% | |
| TAGCATGTATCATGACATAT+TGG | - | chr7.1:52198203-52198222 | MS.gene010928:intron | 30.0% | |
| TCTAAAGATGTGAACAATGA+AGG | + | chr7.1:52200245-52200264 | None:intergenic | 30.0% | |
| TGCAACTTACCATAAGAAAT+CGG | + | chr7.1:52199398-52199417 | None:intergenic | 30.0% | |
| TTATGTGTGTGAGTTTATGA+TGG | - | chr7.1:52198055-52198074 | MS.gene010928:CDS | 30.0% | |
| TTGTAGGCTAATGAAACTAT+GGG | - | chr7.1:52198412-52198431 | MS.gene010928:intron | 30.0% | |
| TTTGTAGAGAAATATGGAGA+AGG | - | chr7.1:52198615-52198634 | MS.gene010928:intron | 30.0% | |
| TTTGTAGGCTAATGAAACTA+TGG | - | chr7.1:52198411-52198430 | MS.gene010928:intron | 30.0% | |
| ! | AAGTTAATTACTTGCTGGTT+TGG | + | chr7.1:52198175-52198194 | None:intergenic | 30.0% |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.1:52198669-52198688 | None:intergenic | 30.0% |
| ! | ATTTGTTGGTCATAGTTTGT+GGG | - | chr7.1:52197905-52197924 | MS.gene010928:CDS | 30.0% |
| ! | CGTTTGTCTTTTCTTTTGAT+TGG | - | chr7.1:52199990-52200009 | MS.gene010928:intron | 30.0% |
| ! | GTTTCATTAGCCTACAAATT+TGG | + | chr7.1:52198409-52198428 | None:intergenic | 30.0% |
| ! | TTGAGTTAGTTTCTTTGTTC+AGG | - | chr7.1:52197824-52197843 | MS.gene010928:CDS | 30.0% |
| ! | TTGGTCCACTAATTTTATGA+TGG | - | chr7.1:52198374-52198393 | MS.gene010928:intron | 30.0% |
| !! | AATTGACATACAGTTTTAGC+TGG | + | chr7.1:52199167-52199186 | None:intergenic | 30.0% |
| !! | TTTGATTTGGATAAGAAGAG+AGG | - | chr7.1:52200046-52200065 | MS.gene010928:intron | 30.0% |
| !!! | AAACGACATACATTTTTAGC+AGG | - | chr7.1:52199195-52199214 | MS.gene010928:CDS | 30.0% |
| AACTGTATGTCAATTCAACG+TGG | - | chr7.1:52199172-52199191 | MS.gene010928:CDS | 35.0% | |
| AAGAACCAATTGGTATCAAC+GGG | + | chr7.1:52199553-52199572 | None:intergenic | 35.0% | |
| ACTATTGTAGAACAGCTATC+AGG | - | chr7.1:52199137-52199156 | MS.gene010928:CDS | 35.0% | |
| AGAAGCTTCTTCTTTCACTT+GGG | + | chr7.1:52200402-52200421 | None:intergenic | 35.0% | |
| CAAGAACCAATTGGTATCAA+CGG | + | chr7.1:52199554-52199573 | None:intergenic | 35.0% | |
| CATAAACTCACACACATAAG+TGG | + | chr7.1:52198054-52198073 | None:intergenic | 35.0% | |
| CTATTGTAGAACAGCTATCA+GGG | - | chr7.1:52199138-52199157 | MS.gene010928:CDS | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | chr7.1:52197749-52197768 | MS.gene010928:intron | 35.0% | |
| CTTTCTCAACAAGAACCAAT+TGG | + | chr7.1:52199563-52199582 | None:intergenic | 35.0% | |
| GATCAAACTGTAGTCCTTTA+AGG | + | chr7.1:52200132-52200151 | None:intergenic | 35.0% | |
| GGTAAGTTGCAAAGAAAGTT+TGG | - | chr7.1:52199407-52199426 | MS.gene010928:CDS | 35.0% | |
| TACCCAAGTTAATTACTTGC+TGG | + | chr7.1:52198180-52198199 | None:intergenic | 35.0% | |
| TATTTCCCGTTGATACCAAT+TGG | - | chr7.1:52199545-52199564 | MS.gene010928:intron | 35.0% | |
| TGGTAAGACACACTTTGATT+TGG | - | chr7.1:52200033-52200052 | MS.gene010928:intron | 35.0% | |
| TGTGTCTTACCAAACTTAAC+TGG | + | chr7.1:52200025-52200044 | None:intergenic | 35.0% | |
| TGTTCTACAATAGTTCCGAA+GGG | + | chr7.1:52199131-52199150 | None:intergenic | 35.0% | |
| ! | TATTTACAAGTCCCCTTTTG+AGG | + | chr7.1:52198343-52198362 | None:intergenic | 35.0% |
| ! | TCATTAGCCTACAAATTTGG+TGG | + | chr7.1:52198406-52198425 | None:intergenic | 35.0% |
| !! | GATTTGTTGGTCATAGTTTG+TGG | - | chr7.1:52197904-52197923 | MS.gene010928:CDS | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | + | chr7.1:52198895-52198914 | None:intergenic | 35.0% |
| !!! | TCTTTTTAGCTGCAACTCTT+TGG | + | chr7.1:52198860-52198879 | None:intergenic | 35.0% |
| AAACTCACACACATAAGTGG+AGG | + | chr7.1:52198051-52198070 | None:intergenic | 40.0% | |
| AAAGAATTGCCCAGCTCAAA+TGG | - | chr7.1:52199579-52199598 | MS.gene010928:intron | 40.0% | |
| ACTGCCCTCTAACTATTACT+TGG | - | chr7.1:52199767-52199786 | MS.gene010928:intron | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.1:52198661-52198680 | MS.gene010928:intron | 40.0% | |
| AGTTTGATCTCACAACTGGA+TGG | - | chr7.1:52200143-52200162 | MS.gene010928:intron | 40.0% | |
| ATATGCCGAAATTGTTAGGC+CGG | - | chr7.1:52197996-52198015 | MS.gene010928:CDS | 40.0% | |
| ATCCTGATTAGGTACTTTGC+AGG | + | chr7.1:52200106-52200125 | None:intergenic | 40.0% | |
| ATTGGACTACCGAAATGGAA+GGG | - | chr7.1:52198221-52198240 | MS.gene010928:intron | 40.0% | |
| CAGCCCAAGTAATAGTTAGA+GGG | + | chr7.1:52199774-52199793 | None:intergenic | 40.0% | |
| CTAATCAGGATGACCCTTAA+AGG | - | chr7.1:52200115-52200134 | MS.gene010928:intron | 40.0% | |
| CTACAGTTTGATCTCACAAC+TGG | - | chr7.1:52200139-52200158 | MS.gene010928:intron | 40.0% | |
| CTATTGCTTCCAATTTCACG+TGG | + | chr7.1:52198915-52198934 | None:intergenic | 40.0% | |
| CTGCCCTCTAACTATTACTT+GGG | - | chr7.1:52199768-52199787 | MS.gene010928:intron | 40.0% | |
| CTGTTCTACAATAGTTCCGA+AGG | + | chr7.1:52199132-52199151 | None:intergenic | 40.0% | |
| GACATATTGGACTACCGAAA+TGG | - | chr7.1:52198216-52198235 | MS.gene010928:intron | 40.0% | |
| GACTAGACCACCAAATTTGT+AGG | - | chr7.1:52198396-52198415 | MS.gene010928:intron | 40.0% | |
| GAGAAGCTTCTTCTTTCACT+TGG | + | chr7.1:52200403-52200422 | None:intergenic | 40.0% | |
| GTGAAAGAAGAAGCTTCTCA+AGG | - | chr7.1:52200404-52200423 | MS.gene010928:CDS | 40.0% | |
| TATCAATCGCCCTTCCATTT+CGG | + | chr7.1:52198233-52198252 | None:intergenic | 40.0% | |
| TATTGGACTACCGAAATGGA+AGG | - | chr7.1:52198220-52198239 | MS.gene010928:intron | 40.0% | |
| TCTACATCTCAAAGTAGGCT+AGG | - | chr7.1:52200292-52200311 | MS.gene010928:intron | 40.0% | |
| TGCAGCCTGTTTACTCAATT+CGG | - | chr7.1:52198439-52198458 | MS.gene010928:intron | 40.0% | |
| TTCCAATTTCACGTGGTTGA+TGG | + | chr7.1:52198908-52198927 | None:intergenic | 40.0% | |
| TTCCATCAACCACGTGAAAT+TGG | - | chr7.1:52198903-52198922 | MS.gene010928:intron | 40.0% | |
| TTCTTTCCATGATGTGTCGA+TGG | - | chr7.1:52199092-52199111 | MS.gene010928:intron | 40.0% | |
| TTTACTCAATTCGGTCCACT+TGG | - | chr7.1:52198448-52198467 | MS.gene010928:intron | 40.0% | |
| ! | CTTTAAGGGTCATCCTGATT+AGG | + | chr7.1:52200117-52200136 | None:intergenic | 40.0% |
| ! | TTAGCTGCAACTCTTTGGAA+TGG | + | chr7.1:52198855-52198874 | None:intergenic | 40.0% |
| AATTGCCCAGCTCAAATGGA+GGG | - | chr7.1:52199583-52199602 | MS.gene010928:intron | 45.0% | |
| AGGCTAATGAAACTATGGGC+TGG | - | chr7.1:52198416-52198435 | MS.gene010928:intron | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7.1:52199357-52199376 | None:intergenic | 45.0% | |
| GCAGCCCAAGTAATAGTTAG+AGG | + | chr7.1:52199775-52199794 | None:intergenic | 45.0% | |
| GCAGCGACATAGATGAGTAA+AGG | + | chr7.1:52197946-52197965 | None:intergenic | 45.0% | |
| GGACGAAGTTCAAATCCCTT+CGG | - | chr7.1:52199113-52199132 | MS.gene010928:intron | 45.0% | |
| GTAGCAACTTTGCATCATGC+TGG | - | chr7.1:52198963-52198982 | MS.gene010928:intron | 45.0% | |
| GTGGACCGAATTGAGTAAAC+AGG | + | chr7.1:52198447-52198466 | None:intergenic | 45.0% | |
| TGATCTCACAACTGGATGGA+AGG | - | chr7.1:52200147-52200166 | MS.gene010928:intron | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7.1:52199361-52199380 | None:intergenic | 45.0% | |
| ! | AACTACGTATGCACTGACGA+AGG | - | chr7.1:52199437-52199456 | MS.gene010928:CDS | 45.0% |
| ! | ACACACATAAGTGGAGGTGT+CGG | + | chr7.1:52198045-52198064 | None:intergenic | 45.0% |
| ! | GATCATCACTCTCTAGCTCA+TGG | - | chr7.1:52198747-52198766 | MS.gene010928:CDS | 45.0% |
| !! | AAATGGATTGGCTTCACCTC+AGG | + | chr7.1:52197716-52197735 | None:intergenic | 45.0% |
| !! | CGTGGAACACCGATTTCTTA+TGG | - | chr7.1:52199386-52199405 | MS.gene010928:CDS | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | - | chr7.1:52200159-52200178 | MS.gene010928:intron | 45.0% |
| !! | TTGGCTTGGACAAGTTAGGT+CGG | - | chr7.1:52198467-52198486 | MS.gene010928:intron | 45.0% |
| CTTCGTCCATCGACACATCA+TGG | + | chr7.1:52199101-52199120 | None:intergenic | 50.0% | |
| GAATTGCCCAGCTCAAATGG+AGG | - | chr7.1:52199582-52199601 | MS.gene010928:intron | 50.0% | |
| GACGTCCGGCCTAACAATTT+CGG | + | chr7.1:52198004-52198023 | None:intergenic | 50.0% | |
| GGCTAGTGATGAAACTCCTG+AGG | - | chr7.1:52197697-52197716 | MS.gene010928:CDS | 50.0% | |
| TAGGACCCTCCATTTGAGCT+GGG | + | chr7.1:52199591-52199610 | None:intergenic | 50.0% | |
| TCAATTCGGTCCACTTGGCT+TGG | - | chr7.1:52198453-52198472 | MS.gene010928:intron | 50.0% | |
| TGTCATGCGTGCATCATACG+TGG | - | chr7.1:52199368-52199387 | MS.gene010928:CDS | 50.0% | |
| TTAGGACCCTCCATTTGAGC+TGG | + | chr7.1:52199592-52199611 | None:intergenic | 50.0% | |
| ! | CCTAACTTGTCCAAGCCAAG+TGG | + | chr7.1:52198466-52198485 | None:intergenic | 50.0% |
| ! | GGCCTGCAAAGTACCTAATC+AGG | - | chr7.1:52200101-52200120 | MS.gene010928:intron | 50.0% |
| ! | TGGCTTGGACAAGTTAGGTC+GGG | - | chr7.1:52198468-52198487 | MS.gene010928:intron | 50.0% |
| !! | ACACATAAGTGGAGGTGTCG+GGG | + | chr7.1:52198043-52198062 | None:intergenic | 50.0% |
| !! | CACACATAAGTGGAGGTGTC+GGG | + | chr7.1:52198044-52198063 | None:intergenic | 50.0% |
| !! | CCACTTGGCTTGGACAAGTT+AGG | - | chr7.1:52198463-52198482 | MS.gene010928:intron | 50.0% |
| GTTAGGCCGGACGTCATGAT+CGG | - | chr7.1:52198009-52198028 | MS.gene010928:CDS | 55.0% | |
| TTAGGCCGGACGTCATGATC+GGG | - | chr7.1:52198010-52198029 | MS.gene010928:CDS | 55.0% | |
| ! | CATGCTGGCAGAGAGTGCAA+AGG | - | chr7.1:52198978-52198997 | MS.gene010928:intron | 55.0% |
| CGAACCCCGATCATGACGTC+CGG | + | chr7.1:52198018-52198037 | None:intergenic | 60.0% | |
| TAGGCCGGACGTCATGATCG+GGG | - | chr7.1:52198011-52198030 | MS.gene010928:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 52197695 | 52200430 | 52197695 | ID=MS.gene010928 |
| chr7.1 | mRNA | 52197695 | 52200430 | 52197695 | ID=MS.gene010928.t1;Parent=MS.gene010928 |
| chr7.1 | exon | 52200347 | 52200430 | 52200347 | ID=MS.gene010928.t1.exon1;Parent=MS.gene010928.t1 |
| chr7.1 | CDS | 52200347 | 52200430 | 52200347 | ID=cds.MS.gene010928.t1;Parent=MS.gene010928.t1 |
| chr7.1 | exon | 52199126 | 52199525 | 52199126 | ID=MS.gene010928.t1.exon2;Parent=MS.gene010928.t1 |
| chr7.1 | CDS | 52199126 | 52199525 | 52199126 | ID=cds.MS.gene010928.t1;Parent=MS.gene010928.t1 |
| chr7.1 | exon | 52198718 | 52198839 | 52198718 | ID=MS.gene010928.t1.exon3;Parent=MS.gene010928.t1 |
| chr7.1 | CDS | 52198718 | 52198839 | 52198718 | ID=cds.MS.gene010928.t1;Parent=MS.gene010928.t1 |
| chr7.1 | exon | 52197821 | 52198109 | 52197821 | ID=MS.gene010928.t1.exon4;Parent=MS.gene010928.t1 |
| chr7.1 | CDS | 52197821 | 52198109 | 52197821 | ID=cds.MS.gene010928.t1;Parent=MS.gene010928.t1 |
| chr7.1 | exon | 52197695 | 52197732 | 52197695 | ID=MS.gene010928.t1.exon5;Parent=MS.gene010928.t1 |
| chr7.1 | CDS | 52197695 | 52197732 | 52197695 | ID=cds.MS.gene010928.t1;Parent=MS.gene010928.t1 |
| Gene Sequence |
| Protein sequence |
