Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010931.t1 | XP_003622663.1 | 82.3 | 316 | 55 | 1 | 1 | 316 | 1 | 315 | 5.70E-147 | 530.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010931.t1 | Q8L3W1 | 27.6 | 340 | 176 | 6 | 13 | 291 | 6 | 336 | 5.9e-28 | 126.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010931.t1 | G7KVV4 | 82.3 | 316 | 55 | 1 | 1 | 316 | 1 | 315 | 4.1e-147 | 530.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010931.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010931.t1 | MTR_7g050560 | 82.278 | 316 | 55 | 1 | 1 | 316 | 1 | 315 | 0.0 | 541 |
| MS.gene010931.t1 | MTR_7g050580 | 67.273 | 330 | 79 | 4 | 1 | 316 | 1 | 315 | 4.07e-155 | 437 |
| MS.gene010931.t1 | MTR_7g050590 | 71.672 | 293 | 67 | 3 | 28 | 304 | 1 | 293 | 4.88e-153 | 431 |
| MS.gene010931.t1 | MTR_7g050710 | 66.044 | 321 | 91 | 4 | 1 | 304 | 1 | 320 | 1.03e-145 | 413 |
| MS.gene010931.t1 | MTR_3g098790 | 64.263 | 319 | 92 | 4 | 1 | 304 | 1 | 312 | 1.18e-142 | 405 |
| MS.gene010931.t1 | MTR_7g050720 | 59.494 | 316 | 101 | 6 | 5 | 293 | 2 | 317 | 1.06e-125 | 362 |
| MS.gene010931.t1 | MTR_8g103940 | 38.387 | 310 | 147 | 9 | 11 | 291 | 37 | 331 | 4.11e-56 | 189 |
| MS.gene010931.t1 | MTR_1g108780 | 36.700 | 297 | 135 | 10 | 29 | 291 | 13 | 290 | 2.09e-52 | 179 |
| MS.gene010931.t1 | MTR_1g035460 | 36.242 | 298 | 145 | 6 | 28 | 291 | 1 | 287 | 9.71e-52 | 175 |
| MS.gene010931.t1 | MTR_3g061320 | 36.721 | 305 | 149 | 12 | 3 | 290 | 2 | 279 | 1.04e-44 | 154 |
| MS.gene010931.t1 | MTR_7g050640 | 65.094 | 106 | 37 | 0 | 1 | 106 | 1 | 106 | 1.74e-43 | 145 |
| MS.gene010931.t1 | MTR_3g061350 | 34.237 | 295 | 178 | 8 | 1 | 290 | 1 | 284 | 4.58e-43 | 150 |
| MS.gene010931.t1 | MTR_3g061370 | 34.615 | 286 | 170 | 8 | 11 | 290 | 7 | 281 | 5.59e-43 | 149 |
| MS.gene010931.t1 | MTR_5g044670 | 30.000 | 310 | 180 | 8 | 13 | 299 | 16 | 311 | 1.60e-42 | 149 |
| MS.gene010931.t1 | MTR_3g061310 | 32.895 | 304 | 162 | 11 | 6 | 290 | 5 | 285 | 5.92e-39 | 139 |
| MS.gene010931.t1 | MTR_3g061340 | 33.218 | 289 | 162 | 9 | 10 | 290 | 9 | 274 | 6.21e-39 | 139 |
| MS.gene010931.t1 | MTR_3g061330 | 52.212 | 113 | 51 | 2 | 1 | 113 | 1 | 110 | 2.27e-33 | 123 |
| MS.gene010931.t1 | MTR_1g035570 | 32.042 | 284 | 169 | 8 | 22 | 291 | 14 | 287 | 6.93e-31 | 120 |
| MS.gene010931.t1 | MTR_3g061290 | 52.941 | 102 | 46 | 1 | 10 | 111 | 9 | 108 | 2.55e-30 | 114 |
| MS.gene010931.t1 | MTR_6g043890 | 30.345 | 290 | 168 | 7 | 11 | 277 | 13 | 291 | 2.68e-30 | 117 |
| MS.gene010931.t1 | MTR_4g119990 | 29.667 | 300 | 163 | 11 | 11 | 277 | 13 | 297 | 1.48e-29 | 116 |
| MS.gene010931.t1 | MTR_3g005490 | 26.804 | 291 | 155 | 6 | 13 | 294 | 21 | 262 | 1.82e-29 | 113 |
| MS.gene010931.t1 | MTR_1g035620 | 29.000 | 300 | 165 | 8 | 10 | 289 | 6 | 277 | 3.48e-29 | 115 |
| MS.gene010931.t1 | MTR_1g035640 | 30.303 | 297 | 180 | 11 | 13 | 299 | 9 | 288 | 7.24e-29 | 115 |
| MS.gene010931.t1 | MTR_3g005480 | 28.070 | 285 | 160 | 8 | 13 | 294 | 21 | 263 | 9.22e-29 | 111 |
| MS.gene010931.t1 | MTR_1g050845 | 27.273 | 286 | 176 | 4 | 10 | 289 | 6 | 265 | 7.52e-27 | 111 |
| MS.gene010931.t1 | MTR_3g061220 | 41.860 | 129 | 58 | 3 | 6 | 134 | 5 | 116 | 2.87e-25 | 98.2 |
| MS.gene010931.t1 | MTR_6g061070 | 27.812 | 320 | 183 | 11 | 7 | 289 | 12 | 320 | 4.65e-25 | 105 |
| MS.gene010931.t1 | MTR_1g021410 | 25.231 | 325 | 190 | 6 | 14 | 290 | 23 | 342 | 7.15e-25 | 103 |
| MS.gene010931.t1 | MTR_1g021360 | 27.138 | 269 | 178 | 7 | 24 | 278 | 193 | 457 | 9.31e-25 | 104 |
| MS.gene010931.t1 | MTR_1g021360 | 34.783 | 92 | 59 | 1 | 11 | 102 | 24 | 114 | 1.34e-11 | 65.5 |
| MS.gene010931.t1 | MTR_5g070440 | 25.795 | 283 | 177 | 6 | 13 | 294 | 21 | 271 | 9.49e-25 | 101 |
| MS.gene010931.t1 | MTR_3g005420 | 27.018 | 285 | 171 | 8 | 13 | 294 | 289 | 539 | 5.79e-24 | 102 |
| MS.gene010931.t1 | MTR_3g005420 | 24.275 | 276 | 137 | 8 | 13 | 278 | 40 | 253 | 1.07e-14 | 74.7 |
| MS.gene010931.t1 | MTR_1g021440 | 25.634 | 355 | 191 | 8 | 6 | 296 | 16 | 361 | 1.21e-23 | 100 |
| MS.gene010931.t1 | MTR_3g005460 | 25.939 | 293 | 176 | 9 | 11 | 294 | 260 | 520 | 5.50e-23 | 99.4 |
| MS.gene010931.t1 | MTR_3g005460 | 34.951 | 103 | 67 | 0 | 13 | 115 | 25 | 127 | 5.35e-18 | 84.7 |
| MS.gene010931.t1 | MTR_1g021400 | 25.000 | 336 | 200 | 7 | 11 | 297 | 28 | 360 | 1.14e-21 | 94.4 |
| MS.gene010931.t1 | MTR_1g035650 | 30.693 | 202 | 131 | 6 | 10 | 206 | 6 | 203 | 1.82e-21 | 90.9 |
| MS.gene010931.t1 | MTR_1g021380 | 25.077 | 323 | 188 | 8 | 16 | 292 | 20 | 334 | 3.02e-21 | 92.8 |
| MS.gene010931.t1 | MTR_1g021330 | 26.409 | 337 | 176 | 9 | 11 | 283 | 24 | 352 | 3.24e-21 | 93.2 |
| MS.gene010931.t1 | MTR_3g005495 | 29.368 | 269 | 137 | 8 | 13 | 278 | 243 | 461 | 7.96e-21 | 92.8 |
| MS.gene010931.t1 | MTR_3g005495 | 36.782 | 87 | 55 | 0 | 29 | 115 | 29 | 115 | 1.14e-16 | 80.5 |
| MS.gene010931.t1 | MTR_1g034240 | 41.584 | 101 | 59 | 0 | 13 | 113 | 7 | 107 | 2.06e-20 | 91.3 |
| MS.gene010931.t1 | MTR_1g034240 | 28.387 | 155 | 101 | 3 | 165 | 315 | 272 | 420 | 4.16e-13 | 69.7 |
| MS.gene010931.t1 | MTR_1g021435 | 24.781 | 343 | 194 | 10 | 6 | 289 | 15 | 352 | 4.82e-20 | 89.7 |
| MS.gene010931.t1 | MTR_4g068320 | 36.364 | 110 | 70 | 0 | 13 | 122 | 6 | 115 | 1.46e-19 | 89.0 |
| MS.gene010931.t1 | MTR_4g068320 | 30.303 | 132 | 86 | 2 | 165 | 296 | 268 | 393 | 6.34e-14 | 72.4 |
| MS.gene010931.t1 | MTR_1g035480 | 36.879 | 141 | 77 | 4 | 9 | 149 | 13 | 141 | 1.17e-18 | 82.4 |
| MS.gene010931.t1 | MTR_1g021350 | 24.671 | 304 | 185 | 9 | 14 | 283 | 22 | 315 | 7.40e-17 | 80.5 |
| MS.gene010931.t1 | MTR_1g035440 | 39.623 | 106 | 57 | 2 | 11 | 112 | 13 | 115 | 1.44e-16 | 78.2 |
| MS.gene010931.t1 | MTR_1g034210 | 38.614 | 101 | 60 | 1 | 13 | 113 | 7 | 105 | 4.44e-16 | 77.8 |
| MS.gene010931.t1 | MTR_1g035500 | 34.194 | 155 | 88 | 5 | 7 | 161 | 19 | 159 | 4.44e-16 | 75.5 |
| MS.gene010931.t1 | MTR_1g033740 | 34.752 | 141 | 79 | 4 | 9 | 149 | 18 | 145 | 6.75e-16 | 75.1 |
| MS.gene010931.t1 | MTR_1g034210 | 38.614 | 101 | 60 | 1 | 13 | 113 | 7 | 105 | 7.18e-16 | 77.8 |
| MS.gene010931.t1 | MTR_1g035520 | 27.304 | 293 | 163 | 10 | 28 | 278 | 87 | 371 | 6.07e-15 | 75.1 |
| MS.gene010931.t1 | MTR_3g005440 | 32.075 | 106 | 69 | 1 | 27 | 132 | 34 | 136 | 6.92e-15 | 75.1 |
| MS.gene010931.t1 | MTR_3g005440 | 30.833 | 120 | 82 | 1 | 7 | 125 | 235 | 354 | 6.25e-13 | 69.3 |
| MS.gene010931.t1 | MTR_3g005420 | 24.275 | 276 | 137 | 8 | 13 | 278 | 21 | 234 | 1.07e-14 | 74.7 |
| MS.gene010931.t1 | MTR_1g035510 | 36.154 | 130 | 67 | 4 | 28 | 157 | 1 | 114 | 1.17e-14 | 72.4 |
| MS.gene010931.t1 | MTR_1g021440 | 32.653 | 98 | 65 | 1 | 6 | 103 | 16 | 112 | 2.14e-13 | 69.7 |
| MS.gene010931.t1 | MTR_1g021440 | 32.653 | 98 | 65 | 1 | 6 | 103 | 16 | 112 | 2.88e-13 | 69.7 |
| MS.gene010931.t1 | MTR_1g021440 | 32.653 | 98 | 65 | 1 | 6 | 103 | 16 | 112 | 5.84e-13 | 69.3 |
| MS.gene010931.t1 | MTR_1g035470 | 36.154 | 130 | 68 | 5 | 28 | 157 | 1 | 115 | 7.16e-13 | 65.5 |
| MS.gene010931.t1 | MTR_1g021320 | 30.000 | 150 | 95 | 2 | 11 | 154 | 23 | 168 | 8.94e-13 | 69.3 |
| MS.gene010931.t1 | MTR_1g021320 | 27.895 | 190 | 121 | 5 | 106 | 283 | 409 | 594 | 4.32e-12 | 67.4 |
| MS.gene010931.t1 | MTR_1g021320 | 25.658 | 152 | 109 | 2 | 14 | 162 | 184 | 334 | 2.24e-11 | 65.1 |
| MS.gene010931.t1 | MTR_1g035490 | 34.711 | 121 | 72 | 4 | 173 | 291 | 81 | 196 | 1.27e-11 | 65.1 |
| MS.gene010931.t1 | MTR_1g021290 | 32.979 | 94 | 62 | 1 | 14 | 107 | 157 | 249 | 2.94e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010931.t1 | AT4G01580 | 40.870 | 115 | 67 | 1 | 3 | 116 | 19 | 133 | 7.51e-24 | 96.7 |
| MS.gene010931.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 1.49e-23 | 99.4 |
| MS.gene010931.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 2.35e-23 | 99.4 |
| MS.gene010931.t1 | AT1G49475 | 44.554 | 101 | 55 | 1 | 12 | 112 | 33 | 132 | 2.60e-23 | 95.1 |
| MS.gene010931.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 2.34e-22 | 92.8 |
| MS.gene010931.t1 | AT3G18960 | 39.130 | 115 | 69 | 1 | 3 | 116 | 19 | 133 | 3.72e-22 | 92.8 |
| MS.gene010931.t1 | AT4G33280 | 28.797 | 316 | 180 | 14 | 14 | 298 | 25 | 326 | 7.45e-21 | 91.7 |
| MS.gene010931.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 5.74e-18 | 80.5 |
| MS.gene010931.t1 | AT3G53310 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 7.65e-13 | 68.2 |
| MS.gene010931.t1 | AT3G17010 | 23.810 | 294 | 173 | 10 | 7 | 278 | 15 | 279 | 6.84e-12 | 65.5 |
| MS.gene010931.t1 | AT1G49480 | 30.709 | 127 | 81 | 3 | 165 | 291 | 102 | 221 | 1.08e-11 | 63.9 |
| MS.gene010931.t1 | AT1G49480 | 30.709 | 127 | 81 | 3 | 165 | 291 | 102 | 221 | 1.08e-11 | 63.9 |
| MS.gene010931.t1 | AT1G49480 | 30.709 | 127 | 81 | 3 | 165 | 291 | 102 | 221 | 1.08e-11 | 63.9 |
Find 53 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCTCCACAAACTTTCT+TGG | 0.219009 | 7.1:+52179580 | None:intergenic |
| TGCAAGGTGGAACTTAAATT+TGG | 0.258525 | 7.1:-52179512 | MS.gene010931:CDS |
| GGAAGGATAATTTATCTCTA+AGG | 0.288679 | 7.1:+52179351 | None:intergenic |
| GAGAGGAGATGTTTATTTGC+AGG | 0.289134 | 7.1:-52178306 | MS.gene010931:CDS |
| TAAATAGTGATGGCAAAATA+TGG | 0.289847 | 7.1:-52179489 | MS.gene010931:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7.1:-52179577 | MS.gene010931:CDS |
| CCAAAGTGTTGCAGCTAAAA+AGG | 0.306832 | 7.1:-52179329 | MS.gene010931:CDS |
| CTAATCAGGATGACCCTTAC+AGG | 0.321649 | 7.1:-52178251 | MS.gene010931:CDS |
| TTCCATCAACCACGTGAAAT+AGG | 0.327923 | 7.1:-52179265 | MS.gene010931:CDS |
| GAGGACAATAACTTGAAAAT+TGG | 0.341359 | 7.1:-52178188 | MS.gene010931:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.367753 | 7.1:-52178336 | MS.gene010931:CDS |
| ATCCTGATTAGGTACTTTGC+AGG | 0.384916 | 7.1:+52178263 | None:intergenic |
| TGGCAAAATATGGTTTGAAA+AGG | 0.393696 | 7.1:-52179479 | MS.gene010931:CDS |
| AGGTGTTAAATGAAGGAGTT+TGG | 0.403488 | 7.1:-52178286 | MS.gene010931:CDS |
| TTCCTATTTCACGTGGTTGA+TGG | 0.411563 | 7.1:+52179263 | None:intergenic |
| AAGTTCCACCTTGCACCATT+TGG | 0.417731 | 7.1:+52179520 | None:intergenic |
| CTGTAAGGGTCATCCTGATT+AGG | 0.427523 | 7.1:+52178252 | None:intergenic |
| GTCTAACATGTGGTCCTGTA+AGG | 0.429846 | 7.1:+52178237 | None:intergenic |
| GATGATACCAAGAAAGTTTG+TGG | 0.432322 | 7.1:-52179587 | MS.gene010931:CDS |
| AAATATGGTTTGAAAAGGGT+TGG | 0.440218 | 7.1:-52179474 | MS.gene010931:CDS |
| GGCCTGCAAAGTACCTAATC+AGG | 0.445165 | 7.1:-52178265 | MS.gene010931:CDS |
| GGACCACATGTTAGACTCTC+AGG | 0.469882 | 7.1:-52178230 | MS.gene010931:CDS |
| TATTTGCAGGTGTTAAATGA+AGG | 0.472581 | 7.1:-52178293 | MS.gene010931:CDS |
| GAGAAGCTTCTTCTTTCACT+TGG | 0.484074 | 7.1:+52177971 | None:intergenic |
| TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7.1:-52179227 | MS.gene010931:CDS |
| TCTAAAGATGTGAACAATGT+AGG | 0.490187 | 7.1:+52178124 | None:intergenic |
| GGCAAAATATGGTTTGAAAA+GGG | 0.493730 | 7.1:-52179478 | MS.gene010931:CDS |
| ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.1:-52179535 | MS.gene010931:CDS |
| TTAAATTTGGTAAATAGTGA+TGG | 0.516606 | 7.1:-52179499 | MS.gene010931:CDS |
| CATATCTGAAAAGCACAAGA+TGG | 0.540339 | 7.1:+52179416 | None:intergenic |
| GTGAAAGAAGAAGCTTCTCA+TGG | 0.547831 | 7.1:-52177967 | MS.gene010931:CDS |
| TGCAACTTACCAGAAGAAAA+CGG | 0.548608 | 7.1:+52178902 | None:intergenic |
| ATGTTAGACTCTCAGGTGGA+TGG | 0.557800 | 7.1:-52178223 | MS.gene010931:CDS |
| AGAAGCTTCTTCTTTCACTT+GGG | 0.559960 | 7.1:+52177972 | None:intergenic |
| CGCATGACAACAAGAAAGGA+TGG | 0.561092 | 7.1:+52178943 | None:intergenic |
| CTTGCTCAAAATCTTCATGA+AGG | 0.562390 | 7.1:-52180428 | MS.gene010931:CDS |
| TTAGCTGCAACACTTTGGGA+AGG | 0.569643 | 7.1:+52179334 | None:intergenic |
| GTAGCAACTTTAAATCATGC+TGG | 0.574431 | 7.1:-52179205 | MS.gene010931:CDS |
| CCACGTGAAATAGGAAGCAA+TGG | 0.577300 | 7.1:-52179256 | MS.gene010931:CDS |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7.1:-52179439 | MS.gene010931:CDS |
| TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7.1:-52179571 | MS.gene010931:CDS |
| TTTGATTTGGATCAGAAGAG+AGG | 0.591832 | 7.1:-52178323 | MS.gene010931:CDS |
| TCTAACATGTGGTCCTGTAA+GGG | 0.599023 | 7.1:+52178238 | None:intergenic |
| TAGACTCTCAGGTGGATGGA+AGG | 0.601234 | 7.1:-52178219 | MS.gene010931:CDS |
| CCATTGCTTCCTATTTCACG+TGG | 0.606111 | 7.1:+52179256 | None:intergenic |
| TGCACGCATGACAACAAGAA+AGG | 0.606198 | 7.1:+52178939 | None:intergenic |
| TGGTTGATGGAATTCAAAAG+AGG | 0.624709 | 7.1:+52179276 | None:intergenic |
| TAAAGACTCCAAATGGTGCA+AGG | 0.629184 | 7.1:-52179528 | MS.gene010931:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.1:-52178207 | MS.gene010931:CDS |
| AGACTCCAAATGGTGCAAGG+TGG | 0.689484 | 7.1:-52179525 | MS.gene010931:CDS |
| CCACATGTTAGACTCTCAGG+TGG | 0.694586 | 7.1:-52178227 | MS.gene010931:CDS |
| CCACCTGAGAGTCTAACATG+TGG | 0.731917 | 7.1:+52178227 | None:intergenic |
| CATGCTGGCAGAGAGTCCAG+AGG | 0.757168 | 7.1:-52179190 | MS.gene010931:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAGGAAAAAAAA+TGG | + | chr7.1:52178277-52178296 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGCTTATAATAT+GGG | + | chr7.1:52178364-52178383 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGCTTATAATA+TGG | + | chr7.1:52178365-52178384 | None:intergenic | 10.0% |
| !! | AATAATAGAATCTAAGTAAA+AGG | + | chr7.1:52178052-52178071 | None:intergenic | 15.0% |
| !! | GATATATTATAATAACAAAG+TGG | - | chr7.1:52179930-52179949 | MS.gene010931:intron | 15.0% |
| !! | TGAAAGAAAAGAATAAATTA+AGG | + | chr7.1:52178288-52178307 | None:intergenic | 15.0% |
| !! | TTTGATTAGATAACTATATA+AGG | - | chr7.1:52179961-52179980 | MS.gene010931:intron | 15.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | chr7.1:52178943-52178962 | MS.gene010931:CDS | 20.0% |
| !! | TTTCAACAAGTAATTAACTT+GGG | - | chr7.1:52178303-52178322 | MS.gene010931:CDS | 20.0% |
| !!! | CATTCGAGTTTTATATTTAA+GGG | - | chr7.1:52178401-52178420 | MS.gene010931:intron | 20.0% |
| !!! | TGTAATTAAGAATTCAAGTT+TGG | - | chr7.1:52178449-52178468 | MS.gene010931:intron | 20.0% |
| !!! | TTATATCATGCATATTGATT+AGG | - | chr7.1:52178819-52178838 | MS.gene010931:intron | 20.0% |
| ! | AACTACCATATGTATATTTG+TGG | + | chr7.1:52178571-52178590 | None:intergenic | 25.0% |
| ! | AAGCAAAAAAAAAATGCACA+TGG | - | chr7.1:52178371-52178390 | MS.gene010931:intron | 25.0% |
| ! | ACTACCATATGTATATTTGT+GGG | + | chr7.1:52178570-52178589 | None:intergenic | 25.0% |
| ! | AGAAACATTCAAAAGACTAT+GGG | - | chr7.1:52178686-52178705 | MS.gene010931:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.1:52178907-52178926 | MS.gene010931:intron | 25.0% |
| ! | ATTTGTAGCTTAATGATACT+AGG | - | chr7.1:52178508-52178527 | MS.gene010931:intron | 25.0% |
| ! | CAAGTATTATCTTGAAAAAG+CGG | + | chr7.1:52177998-52178017 | None:intergenic | 25.0% |
| ! | CTTTCAACAAGTAATTAACT+TGG | - | chr7.1:52178302-52178321 | MS.gene010931:CDS | 25.0% |
| ! | GGAAAAAAAATGGTTCAAAT+TGG | + | chr7.1:52178267-52178286 | None:intergenic | 25.0% |
| ! | GTATCATTAAGCTACAAATT+TGG | + | chr7.1:52178507-52178526 | None:intergenic | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | chr7.1:52178953-52178972 | MS.gene010931:CDS | 25.0% |
| ! | TCTATCATAAAACAGATTAG+TGG | + | chr7.1:52178476-52178495 | None:intergenic | 25.0% |
| ! | TCTATGTGATGATATCTTAA+TGG | + | chr7.1:52179890-52179909 | None:intergenic | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | chr7.1:52179410-52179429 | None:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | chr7.1:52179342-52179361 | MS.gene010931:CDS | 25.0% |
| ! | TGTTAGAAGTTAATTAGTAG+AGG | - | chr7.1:52179728-52179747 | MS.gene010931:intron | 25.0% |
| ! | TTTGTAGCTTAATGATACTA+GGG | - | chr7.1:52178509-52178528 | MS.gene010931:intron | 25.0% |
| !! | AATTAACTTGGGTAAGATAT+TGG | - | chr7.1:52178314-52178333 | MS.gene010931:CDS | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | chr7.1:52179047-52179066 | MS.gene010931:intron | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | chr7.1:52179409-52179428 | MS.gene010931:CDS | 25.0% |
| !! | TTTTTGCTTATAATATGGGA+CGG | + | chr7.1:52178360-52178379 | None:intergenic | 25.0% |
| !!! | CTATCAGATGTACTTTTTTT+GGG | - | chr7.1:52178593-52178612 | MS.gene010931:intron | 25.0% |
| !!! | GCATTCGAGTTTTATATTTA+AGG | - | chr7.1:52178400-52178419 | MS.gene010931:intron | 25.0% |
| !!! | TCACATTTAGTTTTCAAATC+AGG | + | chr7.1:52178771-52178790 | None:intergenic | 25.0% |
| !!! | TCTATCAGATGTACTTTTTT+TGG | - | chr7.1:52178592-52178611 | MS.gene010931:intron | 25.0% |
| AAATATGGTTTGAAAAGGGT+TGG | - | chr7.1:52178968-52178987 | MS.gene010931:CDS | 30.0% | |
| ACTACAAGATGTGTATTTAG+AGG | - | chr7.1:52178637-52178656 | MS.gene010931:intron | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | - | chr7.1:52178865-52178884 | MS.gene010931:intron | 30.0% | |
| ATCATCACATAGATGTTTAC+TGG | - | chr7.1:52179897-52179916 | MS.gene010931:intron | 30.0% | |
| ATTATCTTGAAAAAGCGGAT+AGG | + | chr7.1:52177993-52178012 | None:intergenic | 30.0% | |
| CTACAAGATGTGTATTTAGA+GGG | - | chr7.1:52178638-52178657 | MS.gene010931:intron | 30.0% | |
| CTACCATATGTATATTTGTG+GGG | + | chr7.1:52178569-52178588 | None:intergenic | 30.0% | |
| CTACTCTAATTATCCTTAGT+TGG | + | chr7.1:52179699-52179718 | None:intergenic | 30.0% | |
| GAGAAACATTCAAAAGACTA+TGG | - | chr7.1:52178685-52178704 | MS.gene010931:intron | 30.0% | |
| GAGGACAATAACTTGAAAAT+TGG | - | chr7.1:52180254-52180273 | MS.gene010931:intron | 30.0% | |
| GGAAGGATAATTTATCTCTA+AGG | + | chr7.1:52179094-52179113 | None:intergenic | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | chr7.1:52178964-52178983 | MS.gene010931:CDS | 30.0% | |
| GTAAGTTGCAAAGAAACATT+TGG | - | chr7.1:52179553-52179572 | MS.gene010931:CDS | 30.0% | |
| TAGAGGGAATTAGTCATATT+GGG | - | chr7.1:52178654-52178673 | MS.gene010931:intron | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | + | chr7.1:52178865-52178884 | None:intergenic | 30.0% | |
| TATTTGCAGGTGTTAAATGA+AGG | - | chr7.1:52180149-52180168 | MS.gene010931:intron | 30.0% | |
| TCATTAAGCTACAAATTTGG+TGG | + | chr7.1:52178504-52178523 | None:intergenic | 30.0% | |
| TCTAAAGATGTGAACAATGT+AGG | + | chr7.1:52180321-52180340 | None:intergenic | 30.0% | |
| TCTCTAGTATTACTGGATTA+AGG | - | chr7.1:52179621-52179640 | MS.gene010931:intron | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | chr7.1:52179215-52179234 | MS.gene010931:CDS | 30.0% | |
| TGCATGATATAACTGTTCTA+AGG | + | chr7.1:52178811-52178830 | None:intergenic | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | chr7.1:52178963-52178982 | MS.gene010931:CDS | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7.1:52180106-52180125 | MS.gene010931:intron | 30.0% | |
| TTACTTATCTATGTCGCTAA+TGG | - | chr7.1:52178233-52178252 | MS.gene010931:CDS | 30.0% | |
| TTAGAGGGAATTAGTCATAT+TGG | - | chr7.1:52178653-52178672 | MS.gene010931:intron | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | - | chr7.1:52178087-52178106 | MS.gene010931:CDS | 30.0% | |
| ! | CATTTGTCTTTTCCTTTGAT+TGG | - | chr7.1:52180063-52180082 | MS.gene010931:intron | 30.0% |
| !! | ATAACTGTTCTAAGGAATGT+GGG | + | chr7.1:52178803-52178822 | None:intergenic | 30.0% |
| !! | TATAACTGTTCTAAGGAATG+TGG | + | chr7.1:52178804-52178823 | None:intergenic | 30.0% |
| !!! | ATTTAGTTTTCAAATCAGGC+CGG | + | chr7.1:52178767-52178786 | None:intergenic | 30.0% |
| !!! | GGGCAATTTTTTTTCTTCAA+AGG | - | chr7.1:52178421-52178440 | MS.gene010931:intron | 30.0% |
| AAGAATGTCACAAGACTTGT+TGG | - | chr7.1:52178180-52178199 | MS.gene010931:CDS | 35.0% | |
| AGAAGCTTCTTCTTTCACTT+GGG | + | chr7.1:52180473-52180492 | None:intergenic | 35.0% | |
| AGAGGGAATTAGTCATATTG+GGG | - | chr7.1:52178655-52178674 | MS.gene010931:intron | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | chr7.1:52180156-52180175 | MS.gene010931:intron | 35.0% | |
| AGTGTTCAACTTCTCAAAGT+AGG | - | chr7.1:52180363-52180382 | MS.gene010931:intron | 35.0% | |
| CCAAATCTCTCTAGTATTAC+TGG | - | chr7.1:52179614-52179633 | MS.gene010931:intron | 35.0% | |
| CCAGTAATACTAGAGAGATT+TGG | + | chr7.1:52179617-52179636 | None:intergenic | 35.0% | |
| CTTGCTCAAAATCTTCATGA+AGG | - | chr7.1:52178014-52178033 | MS.gene010931:intron | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | chr7.1:52179271-52179290 | None:intergenic | 35.0% | |
| GATGATACCAAGAAAGTTTG+TGG | - | chr7.1:52178855-52178874 | MS.gene010931:intron | 35.0% | |
| GTAGCAACTTTAAATCATGC+TGG | - | chr7.1:52179237-52179256 | MS.gene010931:CDS | 35.0% | |
| TGCAACTTACCAGAAGAAAA+CGG | + | chr7.1:52179543-52179562 | None:intergenic | 35.0% | |
| TGCAAGGTGGAACTTAAATT+TGG | - | chr7.1:52178930-52178949 | MS.gene010931:CDS | 35.0% | |
| TGGTATATTCTGCCAATCAA+AGG | + | chr7.1:52180078-52180097 | None:intergenic | 35.0% | |
| TGTCTATTACCAAAAATGCG+TGG | + | chr7.1:52180098-52180117 | None:intergenic | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | chr7.1:52178871-52178890 | MS.gene010931:intron | 35.0% | |
| ! | ACTTGTTGGTCATAGTTTGT+GGG | - | chr7.1:52178194-52178213 | MS.gene010931:CDS | 35.0% |
| ! | AGCTTTTATCTTTTGACCAC+TGG | + | chr7.1:52179142-52179161 | None:intergenic | 35.0% |
| ! | CAGAATATACCACGCATTTT+TGG | - | chr7.1:52180086-52180105 | MS.gene010931:intron | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | chr7.1:52179029-52179048 | None:intergenic | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | + | chr7.1:52179169-52179188 | None:intergenic | 35.0% |
| !! | TTTGATTTGGATCAGAAGAG+AGG | - | chr7.1:52180119-52180138 | MS.gene010931:intron | 35.0% |
| !! | TTTTTGGGAAAACGCACATT+CGG | - | chr7.1:52178608-52178627 | MS.gene010931:intron | 35.0% |
| !!! | CTTTTTAGCTGCAACACTTT+GGG | + | chr7.1:52179115-52179134 | None:intergenic | 35.0% |
| ACATTCAAAAGACTATGGGC+TGG | - | chr7.1:52178690-52178709 | MS.gene010931:intron | 40.0% | |
| AGGCCCCACAAATATACATA+TGG | - | chr7.1:52178563-52178582 | MS.gene010931:intron | 40.0% | |
| ATCCTGATTAGGTACTTTGC+AGG | + | chr7.1:52180182-52180201 | None:intergenic | 40.0% | |
| CATTCAAAAGACTATGGGCT+GGG | - | chr7.1:52178691-52178710 | MS.gene010931:intron | 40.0% | |
| GACTATGTATGCACCAACTA+AGG | - | chr7.1:52179683-52179702 | MS.gene010931:intron | 40.0% | |
| GAGAAGCTTCTTCTTTCACT+TGG | + | chr7.1:52180474-52180493 | None:intergenic | 40.0% | |
| GAGAGGAGATGTTTATTTGC+AGG | - | chr7.1:52180136-52180155 | MS.gene010931:intron | 40.0% | |
| GAGGGAATTAGTCATATTGG+GGG | - | chr7.1:52178656-52178675 | MS.gene010931:intron | 40.0% | |
| GTGAAAGAAGAAGCTTCTCA+TGG | - | chr7.1:52180475-52180494 | MS.gene010931:CDS | 40.0% | |
| TAAAGACTCCAAATGGTGCA+AGG | - | chr7.1:52178914-52178933 | MS.gene010931:CDS | 40.0% | |
| TATTTCCCCTTGATACCAGT+TGG | - | chr7.1:52179813-52179832 | MS.gene010931:intron | 40.0% | |
| TCTAACATGTGGTCCTGTAA+GGG | + | chr7.1:52180207-52180226 | None:intergenic | 40.0% | |
| TGCTTATAATATGGGACGGA+GGG | + | chr7.1:52178356-52178375 | None:intergenic | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | - | chr7.1:52179177-52179196 | MS.gene010931:intron | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | + | chr7.1:52179182-52179201 | None:intergenic | 40.0% | |
| TTGCTTATAATATGGGACGG+AGG | + | chr7.1:52178357-52178376 | None:intergenic | 40.0% | |
| ! | ATACTAGGGCGTTTCTCTTT+AGG | - | chr7.1:52178523-52178542 | MS.gene010931:intron | 40.0% |
| ! | ATTCAAAAGACTATGGGCTG+GGG | - | chr7.1:52178692-52178711 | MS.gene010931:intron | 40.0% |
| ! | CGTTAAACACCGTTTTCTTC+TGG | - | chr7.1:52179531-52179550 | MS.gene010931:CDS | 40.0% |
| ! | TTGGTCATAGTTTGTGGGTT+AGG | - | chr7.1:52178199-52178218 | MS.gene010931:CDS | 40.0% |
| !! | CCAAAGTGTTGCAGCTAAAA+AGG | - | chr7.1:52179113-52179132 | MS.gene010931:intron | 40.0% |
| !! | GACTTGTTGGTCATAGTTTG+TGG | - | chr7.1:52178193-52178212 | MS.gene010931:CDS | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | chr7.1:52178741-52178760 | MS.gene010931:intron | 40.0% |
| !!! | CCTTTTTAGCTGCAACACTT+TGG | + | chr7.1:52179116-52179135 | None:intergenic | 40.0% |
| AAGGACCAACTGGTATCAAG+GGG | + | chr7.1:52179821-52179840 | None:intergenic | 45.0% | |
| AAGTTCCACCTTGCACCATT+TGG | + | chr7.1:52178925-52178944 | None:intergenic | 45.0% | |
| ACAAGGACCAACTGGTATCA+AGG | + | chr7.1:52179823-52179842 | None:intergenic | 45.0% | |
| ATGTTAGACTCTCAGGTGGA+TGG | - | chr7.1:52180219-52180238 | MS.gene010931:intron | 45.0% | |
| CAAAAACTGCCCAGCTCAAA+TGG | - | chr7.1:52179847-52179866 | MS.gene010931:intron | 45.0% | |
| CAAGGACCAACTGGTATCAA+GGG | + | chr7.1:52179822-52179841 | None:intergenic | 45.0% | |
| CCACGTGAAATAGGAAGCAA+TGG | - | chr7.1:52179186-52179205 | MS.gene010931:intron | 45.0% | |
| CCATTGCTTCCTATTTCACG+TGG | + | chr7.1:52179189-52179208 | None:intergenic | 45.0% | |
| CGCATGACAACAAGAAAGGA+TGG | + | chr7.1:52179502-52179521 | None:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | chr7.1:52180191-52180210 | MS.gene010931:intron | 45.0% | |
| CTATGTCGCTAATGGCTTCA+TGG | - | chr7.1:52178241-52178260 | MS.gene010931:CDS | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | chr7.1:52180193-52180212 | None:intergenic | 45.0% | |
| GGCAGCCTGTTTACTCAATT+CGG | - | chr7.1:52178713-52178732 | MS.gene010931:intron | 45.0% | |
| GTCTAACATGTGGTCCTGTA+AGG | + | chr7.1:52180208-52180227 | None:intergenic | 45.0% | |
| TAGAACCCTCCATTTGAGCT+GGG | + | chr7.1:52179859-52179878 | None:intergenic | 45.0% | |
| TGCACGCATGACAACAAGAA+AGG | + | chr7.1:52179506-52179525 | None:intergenic | 45.0% | |
| TGGGGCCTTAGAGATATTGA+GGG | + | chr7.1:52178551-52178570 | None:intergenic | 45.0% | |
| TTAGAACCCTCCATTTGAGC+TGG | + | chr7.1:52179860-52179879 | None:intergenic | 45.0% | |
| TTTACTCAATTCGGCCCACT+TGG | - | chr7.1:52178722-52178741 | MS.gene010931:intron | 45.0% | |
| TTTGCTCAACAAGGACCAAC+TGG | + | chr7.1:52179831-52179850 | None:intergenic | 45.0% | |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | chr7.1:52178740-52178759 | None:intergenic | 45.0% |
| ! | CTAACTTGTCCAAGCCAAGT+GGG | + | chr7.1:52178739-52178758 | None:intergenic | 45.0% |
| ! | TGGGCAGTTTTTGCTCAACA+AGG | + | chr7.1:52179840-52179859 | None:intergenic | 45.0% |
| ! | TTAGCTGCAACACTTTGGGA+AGG | + | chr7.1:52179111-52179130 | None:intergenic | 45.0% |
| AAACTGCCCAGCTCAAATGG+AGG | - | chr7.1:52179850-52179869 | MS.gene010931:intron | 50.0% | |
| AACTGCCCAGCTCAAATGGA+GGG | - | chr7.1:52179851-52179870 | MS.gene010931:intron | 50.0% | |
| AGACTCCAAATGGTGCAAGG+TGG | - | chr7.1:52178917-52178936 | MS.gene010931:CDS | 50.0% | |
| AGGCCCCCTCAATATCTCTA+AGG | - | chr7.1:52178543-52178562 | MS.gene010931:intron | 50.0% | |
| CCACATGTTAGACTCTCAGG+TGG | - | chr7.1:52180215-52180234 | MS.gene010931:intron | 50.0% | |
| CCACCTGAGAGTCTAACATG+TGG | + | chr7.1:52180218-52180237 | None:intergenic | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | chr7.1:52178745-52178764 | MS.gene010931:intron | 50.0% | |
| GCAGCTAAAAAGGTCTCCAG+TGG | - | chr7.1:52179123-52179142 | MS.gene010931:intron | 50.0% | |
| GGACCACATGTTAGACTCTC+AGG | - | chr7.1:52180212-52180231 | MS.gene010931:intron | 50.0% | |
| GGGCCTTAGAGATATTGAGG+GGG | + | chr7.1:52178549-52178568 | None:intergenic | 50.0% | |
| GGGGCCTTAGAGATATTGAG+GGG | + | chr7.1:52178550-52178569 | None:intergenic | 50.0% | |
| GTGGGCCGAATTGAGTAAAC+AGG | + | chr7.1:52178721-52178740 | None:intergenic | 50.0% | |
| GTGGGGCCTTAGAGATATTG+AGG | + | chr7.1:52178552-52178571 | None:intergenic | 50.0% | |
| TAGACTCTCAGGTGGATGGA+AGG | - | chr7.1:52180223-52180242 | MS.gene010931:intron | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | - | chr7.1:52179003-52179022 | MS.gene010931:CDS | 50.0% |
| ! | GGCCTGCAAAGTACCTAATC+AGG | - | chr7.1:52180177-52180196 | MS.gene010931:intron | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7.1:52180235-52180254 | MS.gene010931:intron | 50.0% |
| TCAATTCGGCCCACTTGGCT+TGG | - | chr7.1:52178727-52178746 | MS.gene010931:intron | 55.0% | |
| CATGCTGGCAGAGAGTCCAG+AGG | - | chr7.1:52179252-52179271 | MS.gene010931:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 52177963 | 52180501 | 52177963 | ID=MS.gene010931 |
| chr7.1 | mRNA | 52177963 | 52180501 | 52177963 | ID=MS.gene010931.t1;Parent=MS.gene010931 |
| chr7.1 | exon | 52180421 | 52180501 | 52180421 | ID=MS.gene010931.t1.exon1;Parent=MS.gene010931.t1 |
| chr7.1 | CDS | 52180421 | 52180501 | 52180421 | ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1 |
| chr7.1 | exon | 52179191 | 52179608 | 52179191 | ID=MS.gene010931.t1.exon2;Parent=MS.gene010931.t1 |
| chr7.1 | CDS | 52179191 | 52179608 | 52179191 | ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1 |
| chr7.1 | exon | 52178912 | 52179033 | 52178912 | ID=MS.gene010931.t1.exon3;Parent=MS.gene010931.t1 |
| chr7.1 | CDS | 52178912 | 52179033 | 52178912 | ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1 |
| chr7.1 | exon | 52178084 | 52178375 | 52178084 | ID=MS.gene010931.t1.exon4;Parent=MS.gene010931.t1 |
| chr7.1 | CDS | 52178084 | 52178375 | 52178084 | ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1 |
| chr7.1 | exon | 52177963 | 52178000 | 52177963 | ID=MS.gene010931.t1.exon5;Parent=MS.gene010931.t1 |
| chr7.1 | CDS | 52177963 | 52178000 | 52177963 | ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1 |
| Gene Sequence |
| Protein sequence |
