AlfalfaGEDB | MS.gene010931

M. sativa cultivar XinJiangDaYe / MS.gene010931

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010931.t1	XP_003622663.1	82.3	316	55	1	1	316	1	315	5.70E-147	530.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010931.t1	Q8L3W1	27.6	340	176	6	13	291	6	336	5.9e-28	126.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010931.t1	G7KVV4	82.3	316	55	1	1	316	1	315	4.1e-147	530.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene010931.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010931.t1	MTR_7g050560	82.278	316	55	1	1	316	1	315	0.0	541
MS.gene010931.t1	MTR_7g050580	67.273	330	79	4	1	316	1	315	4.07e-155	437
MS.gene010931.t1	MTR_7g050590	71.672	293	67	3	28	304	1	293	4.88e-153	431
MS.gene010931.t1	MTR_7g050710	66.044	321	91	4	1	304	1	320	1.03e-145	413
MS.gene010931.t1	MTR_3g098790	64.263	319	92	4	1	304	1	312	1.18e-142	405
MS.gene010931.t1	MTR_7g050720	59.494	316	101	6	5	293	2	317	1.06e-125	362
MS.gene010931.t1	MTR_8g103940	38.387	310	147	9	11	291	37	331	4.11e-56	189
MS.gene010931.t1	MTR_1g108780	36.700	297	135	10	29	291	13	290	2.09e-52	179
MS.gene010931.t1	MTR_1g035460	36.242	298	145	6	28	291	1	287	9.71e-52	175
MS.gene010931.t1	MTR_3g061320	36.721	305	149	12	3	290	2	279	1.04e-44	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010931.t1	AT4G01580	40.870	115	67	1	3	116	19	133	7.51e-24	96.7
MS.gene010931.t1	AT3G18990	44.444	99	55	0	13	111	6	104	1.49e-23	99.4
MS.gene010931.t1	AT3G18990	44.444	99	55	0	13	111	6	104	2.35e-23	99.4
MS.gene010931.t1	AT1G49475	44.554	101	55	1	12	112	33	132	2.60e-23	95.1
MS.gene010931.t1	AT3G18960	39.130	115	69	1	3	116	19	133	2.34e-22	92.8
MS.gene010931.t1	AT3G18960	39.130	115	69	1	3	116	19	133	3.72e-22	92.8
MS.gene010931.t1	AT4G33280	28.797	316	180	14	14	298	25	326	7.45e-21	91.7
MS.gene010931.t1	AT3G18960	44.318	88	49	0	29	116	9	96	5.74e-18	80.5
MS.gene010931.t1	AT3G53310	34.314	102	65	2	3	104	2	101	7.65e-13	68.2
MS.gene010931.t1	AT3G17010	23.810	294	173	10	7	278	15	279	6.84e-12	65.5

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Find 53 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGTTTGAAAAGGGT+TGG	0.440218	7.1:-52179474	MS.gene010931:CDS
AAGTTCCACCTTGCACCATT+TGG	0.417731	7.1:+52179520	None:intergenic
AGAAAGTTTGTGGAGAAATA+TGG	0.293086	7.1:-52179577	MS.gene010931:CDS
AGAAGCTTCTTCTTTCACTT+GGG	0.559960	7.1:+52177972	None:intergenic
AGACTCCAAATGGTGCAAGG+TGG	0.689484	7.1:-52179525	MS.gene010931:CDS
AGGTGTTAAATGAAGGAGTT+TGG	0.403488	7.1:-52178286	MS.gene010931:CDS
ATATATCTAAAGACTCCAAA+TGG	0.494837	7.1:-52179535	MS.gene010931:CDS
ATCCTGATTAGGTACTTTGC+AGG	0.384916	7.1:+52178263	None:intergenic
ATGTTAGACTCTCAGGTGGA+TGG	0.557800	7.1:-52178223	MS.gene010931:CDS
CATATCTGAAAAGCACAAGA+TGG	0.540339	7.1:+52179416	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGGTTTGAAAAGGGT+TGG	-	chr7.1:52178968-52178987	MS.gene010931:CDS	30.0%
ACTACAAGATGTGTATTTAG+AGG	-	chr7.1:52178637-52178656	MS.gene010931:intron	30.0%
AGAAAGTTTGTGGAGAAATA+TGG	-	chr7.1:52178865-52178884	MS.gene010931:intron	30.0%
ATCATCACATAGATGTTTAC+TGG	-	chr7.1:52179897-52179916	MS.gene010931:intron	30.0%
ATTATCTTGAAAAAGCGGAT+AGG	+	chr7.1:52177993-52178012	None:intergenic	30.0%
CTACAAGATGTGTATTTAGA+GGG	-	chr7.1:52178638-52178657	MS.gene010931:intron	30.0%
CTACCATATGTATATTTGTG+GGG	+	chr7.1:52178569-52178588	None:intergenic	30.0%
CTACTCTAATTATCCTTAGT+TGG	+	chr7.1:52179699-52179718	None:intergenic	30.0%
GAGAAACATTCAAAAGACTA+TGG	-	chr7.1:52178685-52178704	MS.gene010931:intron	30.0%
GAGGACAATAACTTGAAAAT+TGG	-	chr7.1:52180254-52180273	MS.gene010931:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	52177963	52180501	52177963	ID=MS.gene010931
chr7.1	mRNA	52177963	52180501	52177963	ID=MS.gene010931.t1;Parent=MS.gene010931
chr7.1	exon	52180421	52180501	52180421	ID=MS.gene010931.t1.exon1;Parent=MS.gene010931.t1
chr7.1	CDS	52180421	52180501	52180421	ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1
chr7.1	exon	52179191	52179608	52179191	ID=MS.gene010931.t1.exon2;Parent=MS.gene010931.t1
chr7.1	CDS	52179191	52179608	52179191	ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1
chr7.1	exon	52178912	52179033	52178912	ID=MS.gene010931.t1.exon3;Parent=MS.gene010931.t1
chr7.1	CDS	52178912	52179033	52178912	ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1
chr7.1	exon	52178084	52178375	52178084	ID=MS.gene010931.t1.exon4;Parent=MS.gene010931.t1
chr7.1	CDS	52178084	52178375	52178084	ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1
chr7.1	exon	52177963	52178000	52177963	ID=MS.gene010931.t1.exon5;Parent=MS.gene010931.t1
chr7.1	CDS	52177963	52178000	52177963	ID=cds.MS.gene010931.t1;Parent=MS.gene010931.t1

Gene Sequence

>MS.gene010931

ATGGCTAGTGAAACTAATGAGTTGAAGCCTATCCGCTTTTTCAAGATAATACTTGCTCAAAATCTTCATGAAGGAAAGCTTGTAAGCCTTTTACTTAGATTCTATTATTTTTGTTCTGATAATCTTGAGTTAGATTCTTTGTTCAGGTAGTTTACATTATTTTGTGTTTTGCTTGCAACTTTTTATTATGTCACAAGATTTTTTTTTTTTTTTTGACAAGAATGTCACAAGACTTGTTGGTCATAGTTTGTGGGTTAGGCATTATTACATTTACTTATCTATGTCGCTAATGGCTTCATGGCCAATTTGAACCATTTTTTTTCCTTAATTTATTCTTTTCTTTCAACAAGTAATTAACTTGGGTAAGATATTGGACAAGAATGACATAATCCCTCCGTCCCATATTATAAGCAAAAAAAAAATGCACATGGTAAATTGCATTCGAGTTTTATATTTAAGGGCAATTTTTTTTCTTCAAAGGAGACTTGTAATTAAGAATTCAAGTTTGGTCCACTAATCTGTTTTATGATAGACTTGACCACCAAATTTGTAGCTTAATGATACTAGGGCGTTTCTCTTTAGGCCCCCTCAATATCTCTAAGGCCCCACAAATATACATATGGTAGTTATCTATCAGATGTACTTTTTTTGGGAAAACGCACATTCGGTAGATAACTACAAGATGTGTATTTAGAGGGAATTAGTCATATTGGGGGATTAAAGAGAAACATTCAAAAGACTATGGGCTGGGGCAGCCTGTTTACTCAATTCGGCCCACTTGGCTTGGACAAGTTAGTTCGGCCGGCCTGATTTGAAAACTAAATGTGAGTTAAAAGTCCCACATTCCTTAGAACAGTTATATCATGCATATTGATTAGGTTTAATTATGACAGATGATACCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGCAAGGTGGAACTTAAATTTGGTAAATAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTGTGCTTTTCAGATATGAAAAAACTTCTCTTTTTGAGGTACATATCTTTGATAAGAGTGCCTTAGAGATAAATTATCCTTCCCAAAGTGTTGCAGCTAAAAAGGTCTCCAGTGGTCAAAAGATAAAAGCTAACTCCTCTTTTGAATTCCATCAACCACGTGAAATAGGAAGCAATGGTTGTGTTGAAGTTGAGAAATTGCAAAAGGTAGCAACTTTAAATCATGCTGGCAGAGAGTCCAGAGGTATACAATTTTGTGTCTTCATTGTCTCATAAAAGTTTCACAAGTTAATATAATTATTAGCTAGCATTTGTTAACATAAATCTTTAGCAGGTTTCAATATATAGAAACATGAAAGATGATCATGAAATATCAGCCTTATTGTGTTCAAATTTTGCAGGAAAACAAGTGATTACTGCTAAGAAAGTTACAACTCTTGAAAGAGCACAATCTTTCAAAACATGCAATCCATCCTTTCTTGTTGTCATGCGTGCATCATACGTTAAACACCGTTTTCTTCTGGTAAGTTGCAAAGAAACATTTGGCTTTTAGAAAACAAGTTGATAGTCAACAACATCAATAACCAAATCTCTCTAGTATTACTGGATTAAGGTGTGAGAAATATATATTGTTAATTTAAAAATAATTTAAAGACTATGTATGCACCAACTAAGGATAATTAGAGTAGTTAAGAATTTGTTAGAAGTTAATTAGTAGAGGAGATAACTTTGAATAAGTTTTGTAACTCATTAACACATAGTTTATGTCTTCTTTCTCTTTCATATTTCCCCTTGATACCAGTTGGTCCTTGTTGAGCAAAAACTGCCCAGCTCAAATGGAGGGTTCTAACAATTATCCATTAAGATATCATCACATAGATGTTTACTGGAATATTAGTAGATATATTATAATAACAAAGTGGTATTATGATTTGATTAGATAACTATATAAGGAAAAACACAGTACTTTTTAAAATTAAATCATTTCAAAATTGTACTTTTCAACAAGAACTTTGTACTTTTTATTCATTAACATTTGTCTTTTCCTTTGATTGGCAGAATATACCACGCATTTTTGGTAATAGACACTTTGATTTGGATCAGAAGAGAGGAGATGTTTATTTGCAGGTGTTAAATGAAGGAGTTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTACAGGACCACATGTTAGACTCTCAGGTGGATGGAAGGCATTTGCAGAGGACAATAACTTGAAAATTGGCGATGTTTGCAAATTTGAGCTCATCTCTAGCACTATACTTACCTACATTGTTCACATCTTTAGAGAGACAGACAATGACAACACAAAGTGTTCAACTTCTCAAAGTAGGATCAATTGATTTTTAATTTTCATTTCTAATTATTTATATTTTTCATATGACAAATAAATTTATTCTTCTCATATGCAGAATTTTCCCAAGTGAAAGAAGAAGCTTCTCATGGATAA

Protein sequence

>MS.gene010931.t1

MASETNELKPIRFFKIILAQNLHEGKLMIPRKFVEKYGEGLSNAIYLKTPNGARWNLNLVNSDGKIWFEKGWKEFAEHHSLAHGHLVLFRYEKTSLFEVHIFDKSALEINYPSQSVAAKKVSSGQKIKANSSFEFHQPREIGSNGCVEVEKLQKVATLNHAGRESRGKQVITAKKVTTLERAQSFKTCNPSFLVVMRASYVKHRFLLNIPRIFGNRHFDLDQKRGDVYLQVLNEGVWPAKYLIRMTLTGPHVRLSGGWKAFAEDNNLKIGDVCKFELISSTILTYIVHIFRETDNDNTKCSTSQKFSQVKEEASHG