Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010932.t1 | AES78884.2 | 84 | 293 | 46 | 1 | 1 | 292 | 1 | 293 | 1.60E-135 | 492.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010932.t1 | Q8L3W1 | 28.8 | 330 | 168 | 7 | 2 | 279 | 22 | 336 | 1.0e-24 | 115.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010932.t1 | G7KVV7 | 84.0 | 293 | 46 | 1 | 1 | 292 | 1 | 293 | 1.2e-135 | 492.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene010932.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010932.t1 | MTR_7g050590 | 83.959 | 293 | 46 | 1 | 1 | 292 | 1 | 293 | 0.0 | 500 |
MS.gene010932.t1 | MTR_7g050560 | 74.257 | 303 | 60 | 4 | 1 | 302 | 28 | 313 | 1.53e-157 | 442 |
MS.gene010932.t1 | MTR_7g050580 | 69.205 | 302 | 77 | 3 | 1 | 302 | 28 | 313 | 4.19e-143 | 405 |
MS.gene010932.t1 | MTR_7g050710 | 66.441 | 295 | 92 | 5 | 2 | 292 | 29 | 320 | 4.21e-135 | 385 |
MS.gene010932.t1 | MTR_3g098790 | 67.235 | 293 | 87 | 4 | 1 | 292 | 28 | 312 | 1.69e-133 | 382 |
MS.gene010932.t1 | MTR_7g050720 | 61.356 | 295 | 98 | 8 | 1 | 281 | 25 | 317 | 2.55e-116 | 338 |
MS.gene010932.t1 | MTR_1g035460 | 34.494 | 316 | 173 | 9 | 1 | 296 | 1 | 302 | 1.01e-50 | 172 |
MS.gene010932.t1 | MTR_1g108780 | 33.904 | 292 | 165 | 9 | 2 | 279 | 13 | 290 | 1.62e-47 | 165 |
MS.gene010932.t1 | MTR_8g103940 | 36.735 | 294 | 153 | 9 | 2 | 279 | 55 | 331 | 6.49e-47 | 164 |
MS.gene010932.t1 | MTR_5g044670 | 33.333 | 303 | 176 | 8 | 1 | 296 | 31 | 314 | 4.76e-43 | 150 |
MS.gene010932.t1 | MTR_3g061320 | 34.173 | 278 | 158 | 8 | 2 | 278 | 26 | 279 | 7.17e-38 | 135 |
MS.gene010932.t1 | MTR_3g061370 | 31.724 | 290 | 154 | 8 | 2 | 278 | 23 | 281 | 1.75e-34 | 127 |
MS.gene010932.t1 | MTR_7g050640 | 72.152 | 79 | 22 | 0 | 1 | 79 | 28 | 106 | 6.03e-34 | 120 |
MS.gene010932.t1 | MTR_3g061350 | 29.856 | 278 | 175 | 7 | 2 | 278 | 26 | 284 | 1.13e-33 | 124 |
MS.gene010932.t1 | MTR_3g061310 | 31.429 | 280 | 169 | 9 | 2 | 278 | 26 | 285 | 6.06e-31 | 117 |
MS.gene010932.t1 | MTR_4g068320 | 26.525 | 377 | 176 | 9 | 2 | 283 | 22 | 392 | 1.05e-30 | 119 |
MS.gene010932.t1 | MTR_1g035570 | 33.452 | 281 | 170 | 9 | 2 | 279 | 21 | 287 | 1.48e-30 | 119 |
MS.gene010932.t1 | MTR_3g061340 | 30.576 | 278 | 163 | 10 | 2 | 278 | 26 | 274 | 3.36e-29 | 112 |
MS.gene010932.t1 | MTR_1g035640 | 30.282 | 284 | 164 | 9 | 2 | 277 | 21 | 278 | 2.24e-27 | 111 |
MS.gene010932.t1 | MTR_3g061330 | 53.012 | 83 | 39 | 0 | 2 | 84 | 26 | 108 | 8.27e-25 | 100 |
MS.gene010932.t1 | MTR_3g061290 | 51.807 | 83 | 40 | 0 | 2 | 84 | 26 | 108 | 2.22e-23 | 95.5 |
MS.gene010932.t1 | MTR_1g021410 | 26.220 | 328 | 183 | 11 | 2 | 284 | 38 | 351 | 1.78e-22 | 96.3 |
MS.gene010932.t1 | MTR_5g070440 | 26.644 | 289 | 150 | 7 | 2 | 282 | 37 | 271 | 1.89e-22 | 94.7 |
MS.gene010932.t1 | MTR_3g005420 | 27.660 | 282 | 156 | 9 | 2 | 282 | 305 | 539 | 1.97e-22 | 97.4 |
MS.gene010932.t1 | MTR_3g005420 | 28.947 | 114 | 79 | 2 | 2 | 114 | 56 | 168 | 1.53e-11 | 65.1 |
MS.gene010932.t1 | MTR_1g021440 | 26.183 | 317 | 184 | 8 | 2 | 271 | 38 | 351 | 2.96e-22 | 95.9 |
MS.gene010932.t1 | MTR_6g043890 | 28.571 | 273 | 174 | 10 | 2 | 265 | 31 | 291 | 3.88e-22 | 95.1 |
MS.gene010932.t1 | MTR_6g061070 | 30.201 | 298 | 179 | 11 | 1 | 278 | 33 | 321 | 5.88e-22 | 95.9 |
MS.gene010932.t1 | MTR_3g005490 | 24.913 | 289 | 146 | 7 | 2 | 282 | 37 | 262 | 1.51e-21 | 92.0 |
MS.gene010932.t1 | MTR_3g005460 | 28.322 | 286 | 149 | 8 | 2 | 278 | 278 | 516 | 2.26e-21 | 94.4 |
MS.gene010932.t1 | MTR_3g005460 | 35.644 | 101 | 59 | 1 | 2 | 102 | 41 | 135 | 9.77e-17 | 80.9 |
MS.gene010932.t1 | MTR_1g035620 | 27.431 | 288 | 162 | 7 | 2 | 277 | 25 | 277 | 2.50e-21 | 93.6 |
MS.gene010932.t1 | MTR_1g050845 | 29.137 | 278 | 158 | 7 | 2 | 277 | 25 | 265 | 6.51e-21 | 93.6 |
MS.gene010932.t1 | MTR_1g021360 | 27.305 | 282 | 166 | 6 | 2 | 266 | 198 | 457 | 6.84e-21 | 92.8 |
MS.gene010932.t1 | MTR_4g119990 | 26.812 | 276 | 181 | 7 | 2 | 265 | 31 | 297 | 8.73e-21 | 91.7 |
MS.gene010932.t1 | MTR_3g005480 | 26.224 | 286 | 141 | 9 | 2 | 279 | 37 | 260 | 1.19e-20 | 89.7 |
MS.gene010932.t1 | MTR_3g005495 | 28.364 | 275 | 129 | 8 | 2 | 272 | 259 | 469 | 1.72e-18 | 85.9 |
MS.gene010932.t1 | MTR_3g005495 | 35.644 | 101 | 59 | 1 | 2 | 102 | 29 | 123 | 4.94e-17 | 81.6 |
MS.gene010932.t1 | MTR_1g034240 | 43.373 | 83 | 47 | 0 | 2 | 84 | 23 | 105 | 8.58e-18 | 83.6 |
MS.gene010932.t1 | MTR_1g034240 | 32.031 | 128 | 80 | 3 | 153 | 279 | 271 | 392 | 9.74e-12 | 65.5 |
MS.gene010932.t1 | MTR_3g005440 | 34.234 | 111 | 68 | 1 | 2 | 112 | 36 | 141 | 6.03e-17 | 81.3 |
MS.gene010932.t1 | MTR_3g005440 | 35.714 | 98 | 57 | 1 | 5 | 102 | 261 | 352 | 4.67e-12 | 66.6 |
MS.gene010932.t1 | MTR_1g034210 | 42.169 | 83 | 46 | 1 | 2 | 84 | 23 | 103 | 1.32e-16 | 79.3 |
MS.gene010932.t1 | MTR_1g034210 | 42.169 | 83 | 46 | 1 | 2 | 84 | 23 | 103 | 1.75e-16 | 79.3 |
MS.gene010932.t1 | MTR_3g061220 | 42.169 | 83 | 35 | 1 | 2 | 84 | 26 | 95 | 3.10e-16 | 73.9 |
MS.gene010932.t1 | MTR_1g021350 | 26.804 | 291 | 180 | 9 | 2 | 271 | 37 | 315 | 3.29e-15 | 75.5 |
MS.gene010932.t1 | MTR_1g035480 | 47.619 | 84 | 41 | 2 | 1 | 84 | 32 | 112 | 3.54e-14 | 70.1 |
MS.gene010932.t1 | MTR_1g035510 | 46.429 | 84 | 42 | 2 | 1 | 84 | 1 | 81 | 1.18e-13 | 69.3 |
MS.gene010932.t1 | MTR_1g035520 | 26.282 | 312 | 179 | 10 | 1 | 277 | 87 | 382 | 1.33e-13 | 70.9 |
MS.gene010932.t1 | MTR_1g098450 | 23.762 | 303 | 177 | 10 | 1 | 285 | 26 | 292 | 2.95e-13 | 69.3 |
MS.gene010932.t1 | MTR_1g035490 | 36.290 | 124 | 72 | 4 | 161 | 282 | 81 | 199 | 5.09e-13 | 68.9 |
MS.gene010932.t1 | MTR_3g005420 | 28.947 | 114 | 79 | 2 | 2 | 114 | 37 | 149 | 1.62e-11 | 65.1 |
MS.gene010932.t1 | MTR_1g035650 | 29.798 | 198 | 115 | 6 | 2 | 194 | 25 | 203 | 5.52e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010932.t1 | AT3G18990 | 29.819 | 332 | 162 | 10 | 2 | 279 | 22 | 336 | 4.25e-33 | 124 |
MS.gene010932.t1 | AT3G18990 | 29.819 | 332 | 162 | 10 | 2 | 279 | 22 | 336 | 1.36e-32 | 124 |
MS.gene010932.t1 | AT4G33280 | 27.653 | 311 | 180 | 12 | 1 | 287 | 38 | 327 | 1.35e-18 | 85.1 |
MS.gene010932.t1 | AT4G01580 | 45.455 | 88 | 48 | 0 | 2 | 89 | 46 | 133 | 3.28e-18 | 81.3 |
MS.gene010932.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 2 | 89 | 46 | 133 | 4.49e-17 | 78.2 |
MS.gene010932.t1 | AT1G49475 | 39.394 | 99 | 59 | 1 | 2 | 100 | 50 | 147 | 4.53e-17 | 78.2 |
MS.gene010932.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 2 | 89 | 9 | 96 | 5.39e-17 | 77.4 |
MS.gene010932.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 2 | 89 | 46 | 133 | 5.50e-17 | 78.2 |
MS.gene010932.t1 | AT1G49480 | 29.282 | 181 | 111 | 6 | 100 | 279 | 57 | 221 | 4.64e-13 | 67.8 |
MS.gene010932.t1 | AT1G49480 | 29.282 | 181 | 111 | 6 | 100 | 279 | 57 | 221 | 4.64e-13 | 67.8 |
MS.gene010932.t1 | AT1G49480 | 29.282 | 181 | 111 | 6 | 100 | 279 | 57 | 221 | 4.64e-13 | 67.8 |
MS.gene010932.t1 | AT2G35310 | 23.913 | 276 | 182 | 9 | 2 | 275 | 36 | 285 | 3.23e-12 | 66.2 |
MS.gene010932.t1 | AT5G18000 | 22.420 | 281 | 188 | 8 | 1 | 269 | 1 | 263 | 3.86e-11 | 62.8 |
MS.gene010932.t1 | AT5G18000 | 22.420 | 281 | 188 | 8 | 1 | 269 | 36 | 298 | 5.58e-11 | 62.8 |
Find 45 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAAAATGGAAATTAAATT+TGG | 0.185593 | 7.1:-52173498 | MS.gene010932:CDS |
CTTCATCAACCACGTGAAAT+TGG | 0.219339 | 7.1:-52173206 | MS.gene010932:CDS |
TATTTCTCCACAAACTTTCT+TGG | 0.232393 | 7.1:+52173566 | None:intergenic |
GGACTAAAATTTCAACTTAC+AGG | 0.245796 | 7.1:-52172196 | MS.gene010932:CDS |
TAAAGGGTAATTTATCTCTA+AGG | 0.280934 | 7.1:+52173337 | None:intergenic |
TACCACGTTCGTTTGGTAAT+AGG | 0.285066 | 7.1:-52172315 | MS.gene010932:CDS |
AATTAGCTTCTTCTTTCATT+TGG | 0.312528 | 7.1:+52171935 | None:intergenic |
ATGAAAGAAGAAGCTAATTA+AGG | 0.334506 | 7.1:-52171931 | None:intergenic |
AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7.1:-52173511 | MS.gene010932:CDS |
GAGTTTCAGCTAAAGCTAAC+AGG | 0.351055 | 7.1:-52173310 | MS.gene010932:CDS |
AGGTGTTAAATGAAGGAGTT+TGG | 0.351103 | 7.1:-52172252 | MS.gene010932:CDS |
TCTAGCGCATGGCCATCTTC+TGG | 0.364197 | 7.1:-52173414 | MS.gene010932:CDS |
TGGTAATAGGCACTTTGATT+TGG | 0.371941 | 7.1:-52172302 | MS.gene010932:CDS |
TAGCTGAAACTCTTTGTAAA+GGG | 0.374498 | 7.1:+52173321 | None:intergenic |
TTAGCTGAAACTCTTTGTAA+AGG | 0.420980 | 7.1:+52173320 | None:intergenic |
CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7.1:-52172322 | MS.gene010932:CDS |
AAATATGCTTTGAAAAGGGT+TGG | 0.440218 | 7.1:-52173460 | MS.gene010932:CDS |
GATGATGCCAAGAAAGTTTG+TGG | 0.445895 | 7.1:-52173573 | MS.gene010932:CDS |
GATATTTGAAAACCAGAAGA+TGG | 0.469802 | 7.1:+52173402 | None:intergenic |
AGCAGTAGTTGTTTCAGAGT+TGG | 0.475808 | 7.1:-52173182 | MS.gene010932:CDS |
AGAAAGTTTGTGGAGAAATA+CGG | 0.478652 | 7.1:-52173563 | MS.gene010932:CDS |
TTTGATTTGGATAAGAAAAG+AGG | 0.484063 | 7.1:-52172289 | MS.gene010932:CDS |
TCTATCAAGAAGTGCAGTAA+AGG | 0.491677 | 7.1:-52172217 | MS.gene010932:CDS |
ATATATCTAAAGACTCCAAA+TGG | 0.494837 | 7.1:-52173521 | MS.gene010932:CDS |
GAGGAAAATAACTTGAAAGT+TGG | 0.503659 | 7.1:-52172154 | MS.gene010932:CDS |
CAAGGAAATAAACTTCCAAA+TGG | 0.511352 | 7.1:-52173275 | MS.gene010932:CDS |
ATGAAGGAGTTTGGACTGCA+AGG | 0.527571 | 7.1:-52172243 | MS.gene010932:CDS |
AAAGCTAACAGGGTCTCAAA+TGG | 0.527649 | 7.1:-52173299 | MS.gene010932:CDS |
AATTTCAACTTACAGGTGGA+TGG | 0.530556 | 7.1:-52172189 | MS.gene010932:CDS |
CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7.1:+52172938 | None:intergenic |
ACTTTGAGATGAAGAACGAT+TGG | 0.560838 | 7.1:+52172048 | None:intergenic |
ACGTGGTTGATGAAGTTCAA+AGG | 0.562344 | 7.1:+52173214 | None:intergenic |
TCAACTTACAGGTGGATGGA+AGG | 0.567817 | 7.1:-52172185 | MS.gene010932:CDS |
CAGAGTTGGAAAACTGCAGA+AGG | 0.574817 | 7.1:-52173168 | MS.gene010932:CDS |
CTAAAATTTCAACTTACAGG+TGG | 0.580366 | 7.1:-52172193 | MS.gene010932:CDS |
TTTGTGGAGAAATACGGAGA+AGG | 0.580720 | 7.1:-52173557 | MS.gene010932:CDS |
GAGCATCACTCTCTAGCGCA+TGG | 0.589556 | 7.1:-52173425 | MS.gene010932:CDS |
AACAGGGTCTCAAATGGTCA+AGG | 0.596416 | 7.1:-52173293 | MS.gene010932:CDS |
CTACTGCTTCCAATTTCACG+TGG | 0.605958 | 7.1:+52173197 | None:intergenic |
TTGAGATGAAGAACGATTGG+TGG | 0.619801 | 7.1:+52172051 | None:intergenic |
AGTTTCAGCTAAAGCTAACA+GGG | 0.634428 | 7.1:-52173309 | MS.gene010932:CDS |
TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.1:-52172173 | MS.gene010932:CDS |
TGCGCGCATGACAACAACAA+AGG | 0.700762 | 7.1:+52172934 | None:intergenic |
CATACTGACAGAGAGTCCAA+AGG | 0.719746 | 7.1:-52173131 | MS.gene010932:intron |
TGCCTATTACCAAACGAACG+TGG | 0.725015 | 7.1:+52172313 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATATTCTAATTATCCT+TGG | + | chr7.1:52172752-52172771 | None:intergenic | 15.0% |
!!! | AGTTATTTGATTATTTTGTT+AGG | - | chr7.1:52172795-52172814 | MS.gene010932:intron | 15.0% |
!! | AAATGTGTATTAATCAAGAT+CGG | + | chr7.1:52172935-52172954 | None:intergenic | 20.0% |
!! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.1:52172007-52172026 | MS.gene010932:intron | 20.0% |
!!! | TGTTGTTATTTTGTTTATTC+TGG | - | chr7.1:52172832-52172851 | MS.gene010932:intron | 20.0% |
! | ATATATCTAAAGACTCCAAA+TGG | - | chr7.1:52171984-52172003 | MS.gene010932:intron | 25.0% |
! | TAAAGGGTAATTTATCTCTA+AGG | + | chr7.1:52172171-52172190 | None:intergenic | 25.0% |
! | TTAAATTTGGCAAAAAGTGA+TGG | - | chr7.1:52172020-52172039 | MS.gene010932:intron | 25.0% |
!! | AATTAGCTTCTTCTTTCATT+TGG | + | chr7.1:52173573-52173592 | None:intergenic | 25.0% |
!! | CATTTGTCTTTTCTTTTACT+TGG | - | chr7.1:52173160-52173179 | MS.gene010932:CDS | 25.0% |
!! | TATTTTGTTAGGTGATTGAT+AGG | - | chr7.1:52172806-52172825 | MS.gene010932:intron | 25.0% |
!!! | GGAAAAATATGCTTTGAAAA+GGG | - | chr7.1:52172041-52172060 | MS.gene010932:intron | 25.0% |
!!! | TGGAAAAATATGCTTTGAAA+AGG | - | chr7.1:52172040-52172059 | MS.gene010932:intron | 25.0% |
!!! | TTTGATTTGGATAAGAAAAG+AGG | - | chr7.1:52173216-52173235 | MS.gene010932:CDS | 25.0% |
AATCTAGTAAAGTGTAGAGA+AGG | + | chr7.1:52172673-52172692 | None:intergenic | 30.0% | |
AGAAAGTTTGTGGAGAAATA+CGG | - | chr7.1:52171942-52171961 | MS.gene010932:CDS | 30.0% | |
AGTATTTGAATAACGCTTGA+CGG | - | chr7.1:52172858-52172877 | MS.gene010932:intron | 30.0% | |
CAAGGAAATAAACTTCCAAA+TGG | - | chr7.1:52172230-52172249 | MS.gene010932:CDS | 30.0% | |
CTAAAATTTCAACTTACAGG+TGG | - | chr7.1:52173312-52173331 | MS.gene010932:CDS | 30.0% | |
CTCTACACTTTACTAGATTA+CGG | - | chr7.1:52172674-52172693 | MS.gene010932:intron | 30.0% | |
GAGGAAAATAACTTGAAAGT+TGG | - | chr7.1:52173351-52173370 | MS.gene010932:CDS | 30.0% | |
GATATTTGAAAACCAGAAGA+TGG | + | chr7.1:52172106-52172125 | None:intergenic | 30.0% | |
GGACTAAAATTTCAACTTAC+AGG | - | chr7.1:52173309-52173328 | MS.gene010932:CDS | 30.0% | |
TAGCTGAAACTCTTTGTAAA+GGG | + | chr7.1:52172187-52172206 | None:intergenic | 30.0% | |
TATTTCTCCACAAACTTTCT+TGG | + | chr7.1:52171942-52171961 | None:intergenic | 30.0% | |
TGCAAAATTGGAACACAATA+AGG | + | chr7.1:52172478-52172497 | None:intergenic | 30.0% | |
TTAGCTGAAACTCTTTGTAA+AGG | + | chr7.1:52172188-52172207 | None:intergenic | 30.0% | |
! | AAGAGGAGATATTCATTTTC+AGG | - | chr7.1:52173233-52173252 | MS.gene010932:CDS | 30.0% |
! | AATTTCCATTTTGCACCATT+TGG | + | chr7.1:52172002-52172021 | None:intergenic | 30.0% |
! | TAATCATGATGTCACTTGTT+AGG | + | chr7.1:52173039-52173058 | None:intergenic | 30.0% |
! | TATTGTGTTCCAATTTTGCA+GGG | - | chr7.1:52172478-52172497 | MS.gene010932:intron | 30.0% |
! | TTATTGTGTTCCAATTTTGC+AGG | - | chr7.1:52172477-52172496 | MS.gene010932:intron | 30.0% |
!! | AAATATGCTTTGAAAAGGGT+TGG | - | chr7.1:52172045-52172064 | MS.gene010932:intron | 30.0% |
!!! | CATTTTCAGGTGTTAAATGA+AGG | - | chr7.1:52173246-52173265 | MS.gene010932:CDS | 30.0% |
AAGCCACAATCTTATACCTT+TGG | + | chr7.1:52172393-52172412 | None:intergenic | 35.0% | |
AATTTCAACTTACAGGTGGA+TGG | - | chr7.1:52173316-52173335 | MS.gene010932:CDS | 35.0% | |
AGGTGTTAAATGAAGGAGTT+TGG | - | chr7.1:52173253-52173272 | MS.gene010932:CDS | 35.0% | |
AGTTTCAGCTAAAGCTAACA+GGG | - | chr7.1:52172196-52172215 | MS.gene010932:CDS | 35.0% | |
ATCGTTCTTCATCTCAAAGT+AGG | - | chr7.1:52173460-52173479 | MS.gene010932:CDS | 35.0% | |
ATCTTTCCATTGATACCAAC+TGG | - | chr7.1:52172975-52172994 | MS.gene010932:CDS | 35.0% | |
CAAAAACTATGTATGCACCA+AGG | - | chr7.1:52172732-52172751 | MS.gene010932:intron | 35.0% | |
CATTTGGAAAGATTCTGCAT+AGG | + | chr7.1:52173557-52173576 | None:intergenic | 35.0% | |
GTAAAGTGTAGAGAAGGATT+TGG | + | chr7.1:52172667-52172686 | None:intergenic | 35.0% | |
GTATTTGAATAACGCTTGAC+GGG | - | chr7.1:52172859-52172878 | MS.gene010932:intron | 35.0% | |
TGGTAATAGGCACTTTGATT+TGG | - | chr7.1:52173203-52173222 | MS.gene010932:CDS | 35.0% | |
! | AGTCCAAAGGTATAAGATTG+TGG | - | chr7.1:52172387-52172406 | MS.gene010932:intron | 35.0% |
! | CGTTGAACATCATTTTCTAC+TGG | - | chr7.1:52172599-52172618 | MS.gene010932:intron | 35.0% |
! | TCTATCAAGAAGTGCAGTAA+AGG | - | chr7.1:52173288-52173307 | MS.gene010932:CDS | 35.0% |
!! | ACTTTGAGATGAAGAACGAT+TGG | + | chr7.1:52173460-52173479 | None:intergenic | 35.0% |
AAAGCTAACAGGGTCTCAAA+TGG | - | chr7.1:52172206-52172225 | MS.gene010932:CDS | 40.0% | |
AGACTCCAAATGGTGCAAAA+TGG | - | chr7.1:52171994-52172013 | MS.gene010932:intron | 40.0% | |
CACTTCTTTCCCTGCAAAAT+TGG | + | chr7.1:52172490-52172509 | None:intergenic | 40.0% | |
CAGAATATACCACGTTCGTT+TGG | - | chr7.1:52173183-52173202 | MS.gene010932:CDS | 40.0% | |
CTTCATCAACCACGTGAAAT+TGG | - | chr7.1:52172299-52172318 | MS.gene010932:CDS | 40.0% | |
GAGTTTCAGCTAAAGCTAAC+AGG | - | chr7.1:52172195-52172214 | MS.gene010932:CDS | 40.0% | |
TAGGATTGTCCATTTGAGCT+GGG | + | chr7.1:52173020-52173039 | None:intergenic | 40.0% | |
TGGAAAGATTCTGCATAGGA+TGG | + | chr7.1:52173553-52173572 | None:intergenic | 40.0% | |
TTAGGATTGTCCATTTGAGC+TGG | + | chr7.1:52173021-52173040 | None:intergenic | 40.0% | |
TTGAGATGAAGAACGATTGG+TGG | + | chr7.1:52173457-52173476 | None:intergenic | 40.0% | |
TTTGTGGAGAAATACGGAGA+AGG | - | chr7.1:52171948-52171967 | MS.gene010932:intron | 40.0% | |
! | AGCAGTAGTTGTTTCAGAGT+TGG | - | chr7.1:52172323-52172342 | MS.gene010932:intron | 40.0% |
! | GCTCTACACTTTTCACCATT+TGG | + | chr7.1:52172248-52172267 | None:intergenic | 40.0% |
! | TACCACGTTCGTTTGGTAAT+AGG | - | chr7.1:52173190-52173209 | MS.gene010932:CDS | 40.0% |
!! | ACGTGGTTGATGAAGTTCAA+AGG | + | chr7.1:52172294-52172313 | None:intergenic | 40.0% |
AACAGGGTCTCAAATGGTCA+AGG | - | chr7.1:52172212-52172231 | MS.gene010932:CDS | 45.0% | |
ATGAAGGAGTTTGGACTGCA+AGG | - | chr7.1:52173262-52173281 | MS.gene010932:CDS | 45.0% | |
ATTTCTCAACAGGGACCAGT+TGG | + | chr7.1:52172993-52173012 | None:intergenic | 45.0% | |
CAGAGTTGGAAAACTGCAGA+AGG | - | chr7.1:52172337-52172356 | MS.gene010932:intron | 45.0% | |
CATACTGACAGAGAGTCCAA+AGG | - | chr7.1:52172374-52172393 | MS.gene010932:intron | 45.0% | |
CGCATGACAACAACAAAGGA+TGG | + | chr7.1:52172570-52172589 | None:intergenic | 45.0% | |
CTACTGCTTCCAATTTCACG+TGG | + | chr7.1:52172311-52172330 | None:intergenic | 45.0% | |
CTGGGCACAATTTCTCAACA+GGG | + | chr7.1:52173002-52173021 | None:intergenic | 45.0% | |
GAAATTGTGCCCAGCTCAAA+TGG | - | chr7.1:52173008-52173027 | MS.gene010932:CDS | 45.0% | |
TCAACTTACAGGTGGATGGA+AGG | - | chr7.1:52173320-52173339 | MS.gene010932:CDS | 45.0% | |
TGCCTATTACCAAACGAACG+TGG | + | chr7.1:52173195-52173214 | None:intergenic | 45.0% | |
TTGAATAACGCTTGACGGGA+GGG | - | chr7.1:52172863-52172882 | MS.gene010932:intron | 45.0% | |
TTTGAATAACGCTTGACGGG+AGG | - | chr7.1:52172862-52172881 | MS.gene010932:intron | 45.0% | |
GCTGGGCACAATTTCTCAAC+AGG | + | chr7.1:52173003-52173022 | None:intergenic | 50.0% | |
TGAATAACGCTTGACGGGAG+GGG | - | chr7.1:52172864-52172883 | MS.gene010932:intron | 50.0% | |
TGCGCGCATGACAACAACAA+AGG | + | chr7.1:52172574-52172593 | None:intergenic | 50.0% | |
! | CAGGGACCAGTTGGTATCAA+TGG | + | chr7.1:52172984-52173003 | None:intergenic | 50.0% |
!! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7.1:52173332-52173351 | MS.gene010932:CDS | 50.0% |
GAGCATCACTCTCTAGCGCA+TGG | - | chr7.1:52172080-52172099 | MS.gene010932:CDS | 55.0% | |
TCTAGCGCATGGCCATCTTC+TGG | - | chr7.1:52172091-52172110 | MS.gene010932:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 52171933 | 52173594 | 52171933 | ID=MS.gene010932 |
chr7.1 | mRNA | 52171933 | 52173594 | 52171933 | ID=MS.gene010932.t1;Parent=MS.gene010932 |
chr7.1 | exon | 52173132 | 52173594 | 52173132 | ID=MS.gene010932.t1.exon1;Parent=MS.gene010932.t1 |
chr7.1 | CDS | 52173132 | 52173594 | 52173132 | ID=cds.MS.gene010932.t1;Parent=MS.gene010932.t1 |
chr7.1 | exon | 52172907 | 52173028 | 52172907 | ID=MS.gene010932.t1.exon2;Parent=MS.gene010932.t1 |
chr7.1 | CDS | 52172907 | 52173028 | 52172907 | ID=cds.MS.gene010932.t1;Parent=MS.gene010932.t1 |
chr7.1 | exon | 52172050 | 52172341 | 52172050 | ID=MS.gene010932.t1.exon3;Parent=MS.gene010932.t1 |
chr7.1 | CDS | 52172050 | 52172341 | 52172050 | ID=cds.MS.gene010932.t1;Parent=MS.gene010932.t1 |
chr7.1 | exon | 52171933 | 52171964 | 52171933 | ID=MS.gene010932.t1.exon4;Parent=MS.gene010932.t1 |
chr7.1 | CDS | 52171933 | 52171964 | 52171933 | ID=cds.MS.gene010932.t1;Parent=MS.gene010932.t1 |
Gene Sequence |
Protein sequence |