Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010933.t1 | AES73017.1 | 63.2 | 315 | 69 | 5 | 1 | 271 | 1 | 312 | 3.90E-99 | 371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010933.t1 | Q8L3W1 | 26.8 | 284 | 150 | 8 | 28 | 261 | 64 | 339 | 1.4e-12 | 75.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010933.t1 | G7J3B6 | 63.2 | 315 | 69 | 5 | 1 | 271 | 1 | 312 | 2.8e-99 | 371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010933.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010933.t1 | MTR_3g098790 | 63.492 | 315 | 68 | 5 | 1 | 271 | 1 | 312 | 9.16e-132 | 377 |
| MS.gene010933.t1 | MTR_7g050580 | 56.269 | 327 | 87 | 6 | 1 | 283 | 1 | 315 | 8.10e-110 | 320 |
| MS.gene010933.t1 | MTR_7g050710 | 54.037 | 322 | 95 | 6 | 1 | 271 | 1 | 320 | 2.48e-108 | 317 |
| MS.gene010933.t1 | MTR_7g050590 | 66.667 | 252 | 74 | 6 | 28 | 271 | 44 | 293 | 7.67e-108 | 315 |
| MS.gene010933.t1 | MTR_7g050560 | 51.506 | 332 | 95 | 7 | 1 | 283 | 1 | 315 | 8.47e-100 | 295 |
| MS.gene010933.t1 | MTR_7g050720 | 52.174 | 322 | 87 | 12 | 1 | 260 | 1 | 317 | 2.14e-92 | 276 |
| MS.gene010933.t1 | MTR_1g035460 | 35.769 | 260 | 130 | 7 | 28 | 262 | 44 | 291 | 2.41e-37 | 136 |
| MS.gene010933.t1 | MTR_1g108780 | 34.118 | 255 | 131 | 8 | 28 | 261 | 55 | 293 | 3.31e-36 | 134 |
| MS.gene010933.t1 | MTR_8g103940 | 34.766 | 256 | 127 | 9 | 28 | 261 | 97 | 334 | 2.43e-34 | 130 |
| MS.gene010933.t1 | MTR_7g050640 | 48.673 | 113 | 15 | 1 | 1 | 70 | 1 | 113 | 3.04e-24 | 94.7 |
| MS.gene010933.t1 | MTR_5g044670 | 27.386 | 241 | 154 | 7 | 28 | 258 | 74 | 303 | 1.01e-20 | 90.5 |
| MS.gene010933.t1 | MTR_6g043890 | 30.667 | 225 | 141 | 8 | 28 | 244 | 74 | 291 | 2.69e-18 | 84.0 |
| MS.gene010933.t1 | MTR_3g061370 | 29.614 | 233 | 145 | 8 | 28 | 257 | 65 | 281 | 3.63e-18 | 82.8 |
| MS.gene010933.t1 | MTR_3g061350 | 27.004 | 237 | 146 | 8 | 28 | 257 | 68 | 284 | 7.90e-18 | 81.6 |
| MS.gene010933.t1 | MTR_1g021270 | 24.834 | 302 | 156 | 8 | 28 | 271 | 73 | 361 | 2.08e-16 | 79.3 |
| MS.gene010933.t1 | MTR_4g119990 | 25.987 | 304 | 161 | 8 | 12 | 257 | 14 | 311 | 1.98e-15 | 75.9 |
| MS.gene010933.t1 | MTR_1g034240 | 33.588 | 131 | 79 | 4 | 134 | 263 | 274 | 397 | 8.15e-15 | 74.3 |
| MS.gene010933.t1 | MTR_4g068320 | 32.824 | 131 | 80 | 4 | 134 | 263 | 270 | 393 | 6.75e-14 | 71.6 |
| MS.gene010933.t1 | MTR_1g021360 | 28.814 | 236 | 150 | 7 | 28 | 254 | 240 | 466 | 9.17e-14 | 71.2 |
| MS.gene010933.t1 | MTR_1g035620 | 29.268 | 246 | 126 | 11 | 26 | 256 | 65 | 277 | 2.61e-13 | 69.7 |
| MS.gene010933.t1 | MTR_3g061310 | 24.380 | 242 | 147 | 9 | 28 | 257 | 68 | 285 | 4.15e-13 | 68.6 |
| MS.gene010933.t1 | MTR_3g005420 | 26.271 | 236 | 127 | 9 | 29 | 261 | 348 | 539 | 1.04e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010933.t1 | AT1G49480 | 33.333 | 126 | 75 | 4 | 134 | 258 | 104 | 221 | 2.52e-13 | 68.2 |
| MS.gene010933.t1 | AT1G49480 | 33.333 | 126 | 75 | 4 | 134 | 258 | 104 | 221 | 2.52e-13 | 68.2 |
| MS.gene010933.t1 | AT1G49480 | 33.333 | 126 | 75 | 4 | 134 | 258 | 104 | 221 | 2.52e-13 | 68.2 |
| MS.gene010933.t1 | AT3G18990 | 32.867 | 143 | 84 | 5 | 134 | 272 | 219 | 353 | 3.92e-13 | 69.3 |
| MS.gene010933.t1 | AT3G18990 | 33.333 | 129 | 77 | 4 | 134 | 261 | 219 | 339 | 6.65e-13 | 68.6 |
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTACAATCTTCATTATT+TGG | 0.148408 | 7.1:+52167625 | None:intergenic |
| GTTAACTCATCCTTTCAATT+TGG | 0.165706 | 7.1:-52167586 | MS.gene010933:CDS |
| TTCTAGCTTCATCAACTCTT+TGG | 0.268362 | 7.1:+52167677 | None:intergenic |
| CGAAGATGTGCACATGAAAA+TGG | 0.274721 | 7.1:+52167731 | None:intergenic |
| TTAACTCATCCTTTCAATTT+GGG | 0.294800 | 7.1:-52167585 | MS.gene010933:CDS |
| ATCTTAATTATATACCTTGC+AGG | 0.322756 | 7.1:+52165453 | None:intergenic |
| AGTAGTTCATGTGGTAAAGT+TGG | 0.387532 | 7.1:-52167559 | MS.gene010933:CDS |
| AAAGAGTTGATGAAGCTAGA+AGG | 0.392608 | 7.1:-52167675 | MS.gene010933:CDS |
| TGGTATGAGACACTTCGATA+TGG | 0.395031 | 7.1:-52165529 | MS.gene010933:CDS |
| CAGGTTATACCGTCTATGTT+TGG | 0.399062 | 7.1:-52165549 | MS.gene010933:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.407820 | 7.1:-52166940 | MS.gene010933:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.413268 | 7.1:-52166941 | MS.gene010933:CDS |
| CATATTTGAAAAGAAGAAGA+TGG | 0.440800 | 7.1:+52167764 | None:intergenic |
| TGTTAACTAGTGGAAGAGTT+TGG | 0.444907 | 7.1:-52165476 | MS.gene010933:CDS |
| AGAAGGGTCTGCAACGTTCA+AGG | 0.457179 | 7.1:-52167658 | MS.gene010933:CDS |
| TGTTGAACGCCACTTTACTT+TGG | 0.458075 | 7.1:-52166908 | MS.gene010933:intron |
| GTAGTTCATGTGGTAAAGTT+GGG | 0.459287 | 7.1:-52167558 | MS.gene010933:CDS |
| CTTCGATATGGAAAAGAAGA+AGG | 0.460858 | 7.1:-52165517 | MS.gene010933:CDS |
| CTACAATCTTCATTATTTGG+AGG | 0.461728 | 7.1:+52167628 | None:intergenic |
| AAGGACAATAACTTAAAAGT+TGG | 0.486873 | 7.1:-52165378 | MS.gene010933:CDS |
| ATAAAAGAAGAAGATATTCA+AGG | 0.505457 | 7.1:-52165156 | MS.gene010933:CDS |
| ACATTTAAATTTGAACTCAC+AGG | 0.533222 | 7.1:-52165420 | MS.gene010933:CDS |
| TAAAGTTGGGAAATCACAAA+AGG | 0.535720 | 7.1:-52167545 | MS.gene010933:CDS |
| TACAACTTACCAAAGTAAAG+TGG | 0.538229 | 7.1:+52166899 | None:intergenic |
| TTACAAGCTTTCCTTCATGA+AGG | 0.538533 | 7.1:+52168200 | None:intergenic |
| AATTTGAACTCACAGGTGGA+TGG | 0.546820 | 7.1:-52165413 | MS.gene010933:CDS |
| TTTAAATTTGAACTCACAGG+TGG | 0.549372 | 7.1:-52165417 | MS.gene010933:CDS |
| GCTTCATCAACTCTTTGGAA+AGG | 0.557423 | 7.1:+52167682 | None:intergenic |
| GTGGAAGAGTTTGGCCTGCA+AGG | 0.558750 | 7.1:-52165467 | MS.gene010933:CDS |
| CCCATGACAACAACAAAGGA+TGG | 0.573784 | 7.1:+52166940 | None:intergenic |
| AAGAGTTGATGAAGCTAGAA+GGG | 0.574479 | 7.1:-52167674 | MS.gene010933:CDS |
| CACTGTTCACATCTTTAGAG+AGG | 0.585792 | 7.1:-52165310 | MS.gene010933:CDS |
| TTCGATATGGAAAAGAAGAA+GGG | 0.592083 | 7.1:-52165516 | MS.gene010933:CDS |
| ACTACTCAAAGCCTTCATGA+AGG | 0.596715 | 7.1:-52168211 | MS.gene010933:CDS |
| ACTACTACTCCCAAATTGAA+AGG | 0.605806 | 7.1:+52167576 | None:intergenic |
| AAGTGGAATTGCTTCACATG+AGG | 0.625242 | 7.1:+52168247 | None:intergenic |
| TTTGGGAGTAGTAGTTCATG+TGG | 0.628536 | 7.1:-52167568 | MS.gene010933:CDS |
| CTTATTGACAGAAAGTGCAA+AGG | 0.642425 | 7.1:-52167511 | MS.gene010933:intron |
| AAGTATCATTCTCTAGCACA+AGG | 0.664475 | 7.1:-52167787 | MS.gene010933:CDS |
| TGGATGGAAAGCATTTGCAA+AGG | 0.665042 | 7.1:-52165397 | MS.gene010933:CDS |
| TGCTCCCATGACAACAACAA+AGG | 0.686642 | 7.1:+52166936 | None:intergenic |
| TGTCTCATACCAAACATAGA+CGG | 0.687526 | 7.1:+52165540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAGTAAGAAATTT+AGG | - | chr7.1:52166878-52166897 | MS.gene010933:intron | 10.0% |
| !! | ATTATTTCCTATAATATTTA+AGG | + | chr7.1:52167747-52167766 | None:intergenic | 10.0% |
| !! | TAAAATATAATTAGATAACT+AGG | - | chr7.1:52167782-52167801 | MS.gene010933:CDS | 10.0% |
| !!! | AAATTTCTTACTTATTTTTT+TGG | + | chr7.1:52166878-52166897 | None:intergenic | 10.0% |
| !!! | AATTTCTTACTTATTTTTTT+GGG | + | chr7.1:52166877-52166896 | None:intergenic | 10.0% |
| !! | AAATTATAGAGATGTAAAAT+CGG | + | chr7.1:52165364-52165383 | None:intergenic | 15.0% |
| !! | AACAATTACTTAATTTCTAA+AGG | - | chr7.1:52166935-52166954 | MS.gene010933:CDS | 15.0% |
| !! | ACAATTACTTAATTTCTAAA+GGG | - | chr7.1:52166936-52166955 | MS.gene010933:CDS | 15.0% |
| !! | GTCTTTAGATATATAATATT+TGG | + | chr7.1:52165525-52165544 | None:intergenic | 15.0% |
| !!! | ATTCATGTTATCATTTTAAA+TGG | - | chr7.1:52165998-52166017 | MS.gene010933:intron | 15.0% |
| !!! | GAAATTAAGTAATTGTTTTA+TGG | + | chr7.1:52166932-52166951 | None:intergenic | 15.0% |
| !!! | TAAATTTTTTCAAACATGAA+AGG | - | chr7.1:52166344-52166363 | MS.gene010933:intron | 15.0% |
| !! | AATAATATTAAGTCTACACT+CGG | - | chr7.1:52166690-52166709 | MS.gene010933:intron | 20.0% |
| !! | AGAACAAAAGCTAATAATTT+AGG | + | chr7.1:52165973-52165992 | None:intergenic | 20.0% |
| !! | AGAGATACCTTAAATATTAT+AGG | - | chr7.1:52167737-52167756 | MS.gene010933:CDS | 20.0% |
| !! | ATAAAAGAAGAAGATATTCA+AGG | - | chr7.1:52168258-52168277 | MS.gene010933:CDS | 20.0% |
| !! | GAAATAATAAAGTGATATCA+TGG | - | chr7.1:52167759-52167778 | MS.gene010933:CDS | 20.0% |
| !! | TGGATATTAAATAAAAAGCT+TGG | - | chr7.1:52167611-52167630 | MS.gene010933:CDS | 20.0% |
| !! | TTAGGTCCAAAAATAAATTA+GGG | - | chr7.1:52166896-52166915 | MS.gene010933:intron | 20.0% |
| !! | TTATAAGCAATTGAAACATT+CGG | + | chr7.1:52167371-52167390 | None:intergenic | 20.0% |
| !! | TTTAGGTCCAAAAATAAATT+AGG | - | chr7.1:52166895-52166914 | MS.gene010933:intron | 20.0% |
| !!! | AAAATGATTTTAGTTGAAAG+CGG | + | chr7.1:52166302-52166321 | None:intergenic | 20.0% |
| !!! | AAATAGATTTTGACATGTTA+TGG | - | chr7.1:52166115-52166134 | MS.gene010933:intron | 20.0% |
| !!! | AATTGTTTTGTATAAACACT+TGG | - | chr7.1:52167591-52167610 | MS.gene010933:CDS | 20.0% |
| !!! | ATATTTGTTATATGAGAATG+TGG | + | chr7.1:52168204-52168223 | None:intergenic | 20.0% |
| !!! | ATCTATCAATTTTATAGAGA+TGG | + | chr7.1:52165396-52165415 | None:intergenic | 20.0% |
| !!! | GAATATCTTCTTCTTTTATT+CGG | + | chr7.1:52168257-52168276 | None:intergenic | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | - | chr7.1:52165577-52165596 | MS.gene010933:intron | 20.0% |
| !!! | TTTTCTTTAAGCAAAAAACA+AGG | + | chr7.1:52165308-52165327 | None:intergenic | 20.0% |
| ! | AAAGTTGCTGGATAATAAAT+TGG | + | chr7.1:52166239-52166258 | None:intergenic | 25.0% |
| ! | AAGGACAATAACTTAAAAGT+TGG | - | chr7.1:52168036-52168055 | MS.gene010933:intron | 25.0% |
| ! | AAGTAGTGAGAAACATATAT+TGG | - | chr7.1:52166658-52166677 | MS.gene010933:intron | 25.0% |
| ! | AATCTATTGTGAGGTTATAA+TGG | - | chr7.1:52167009-52167028 | MS.gene010933:CDS | 25.0% |
| ! | ACATCTCTCTATACATAAAA+TGG | + | chr7.1:52167510-52167529 | None:intergenic | 25.0% |
| ! | ACATTTAAATTTGAACTCAC+AGG | - | chr7.1:52167994-52168013 | MS.gene010933:intron | 25.0% |
| ! | ATCTATTGTGAGGTTATAAT+GGG | - | chr7.1:52167010-52167029 | MS.gene010933:CDS | 25.0% |
| ! | ATCTTAATTATATACCTTGC+AGG | + | chr7.1:52167964-52167983 | None:intergenic | 25.0% |
| ! | CAATCTAGAAAAACAAGATT+TGG | + | chr7.1:52166577-52166596 | None:intergenic | 25.0% |
| ! | CATATTTGAAAAGAAGAAGA+TGG | + | chr7.1:52165653-52165672 | None:intergenic | 25.0% |
| ! | GGAAAAATATGGTTTCAAAA+GGG | - | chr7.1:52165588-52165607 | MS.gene010933:intron | 25.0% |
| ! | TAAAATTCTCTTAACTATGC+CGG | - | chr7.1:52167388-52167407 | MS.gene010933:intron | 25.0% |
| ! | TAATTCTCTTCAAACTTTCT+TGG | + | chr7.1:52165489-52165508 | None:intergenic | 25.0% |
| ! | TAGGTCCAAAAATAAATTAG+GGG | - | chr7.1:52166897-52166916 | MS.gene010933:intron | 25.0% |
| ! | TAGTTATGATCTTGAAAAAG+TGG | + | chr7.1:52165187-52165206 | None:intergenic | 25.0% |
| ! | TCAATATCTCAAAGTAAGTT+TGG | - | chr7.1:52168150-52168169 | MS.gene010933:intron | 25.0% |
| ! | TGGAAAAATATGGTTTCAAA+AGG | - | chr7.1:52165587-52165606 | MS.gene010933:intron | 25.0% |
| ! | TTAACTCATCCTTTCAATTT+GGG | - | chr7.1:52165829-52165848 | MS.gene010933:intron | 25.0% |
| ! | TTCAAAGTGGAAATTAGATT+TGG | - | chr7.1:52165554-52165573 | MS.gene010933:intron | 25.0% |
| !! | GAAAGGATATTTTATCTCTA+AGG | + | chr7.1:52165718-52165737 | None:intergenic | 25.0% |
| !! | TCATTACACATTTTTATGAG+AGG | - | chr7.1:52167145-52167164 | MS.gene010933:intron | 25.0% |
| !! | TTAGATTTGGTAAAAAGTGA+TGG | - | chr7.1:52165567-52165586 | MS.gene010933:intron | 25.0% |
| !!! | AAATGATTTTAGTTGAAAGC+GGG | + | chr7.1:52166301-52166320 | None:intergenic | 25.0% |
| !!! | ATGAACCCCTAATTTATTTT+TGG | + | chr7.1:52166905-52166924 | None:intergenic | 25.0% |
| !!! | CAAATCTTGTTTTTCTAGAT+TGG | - | chr7.1:52166575-52166594 | MS.gene010933:intron | 25.0% |
| !!! | CTAGATTATTAGTTTGTGTT+TGG | - | chr7.1:52166052-52166071 | MS.gene010933:intron | 25.0% |
| !!! | TGATTTTGATAGAAGAGTTT+GGG | + | chr7.1:52167062-52167081 | None:intergenic | 25.0% |
| !!! | TTACTTATTTTTTTGGGTCA+AGG | + | chr7.1:52166871-52166890 | None:intergenic | 25.0% |
| !!! | TTGATTTTGATAGAAGAGTT+TGG | + | chr7.1:52167063-52167082 | None:intergenic | 25.0% |
| AAAGAAAACAAGACCTTACT+TGG | - | chr7.1:52165320-52165339 | MS.gene010933:CDS | 30.0% | |
| AAATATGGTTTCAAAAGGGT+TGG | - | chr7.1:52165592-52165611 | MS.gene010933:intron | 30.0% | |
| AACATTCGGATTACAATTTG+CGG | + | chr7.1:52167357-52167376 | None:intergenic | 30.0% | |
| AAGATACAAATCATAGCTTG+AGG | + | chr7.1:52166190-52166209 | None:intergenic | 30.0% | |
| AATAATCTAGCAATTCCACA+TGG | + | chr7.1:52166042-52166061 | None:intergenic | 30.0% | |
| AATGCTGACATTGACATATT+TGG | + | chr7.1:52167311-52167330 | None:intergenic | 30.0% | |
| ACCTCACAATAGATTATGAA+TGG | + | chr7.1:52167004-52167023 | None:intergenic | 30.0% | |
| AGTTGTAGTCTAAACAATTG+AGG | - | chr7.1:52167114-52167133 | MS.gene010933:intron | 30.0% | |
| ATATATCTAAAGACTCCAAG+TGG | - | chr7.1:52165531-52165550 | MS.gene010933:CDS | 30.0% | |
| CCTCACAATAGATTATGAAT+GGG | + | chr7.1:52167003-52167022 | None:intergenic | 30.0% | |
| CTACAATCTTCATTATTTGG+AGG | + | chr7.1:52165789-52165808 | None:intergenic | 30.0% | |
| CTACTTAATCTAGTAAAGAC+TGG | + | chr7.1:52166644-52166663 | None:intergenic | 30.0% | |
| GCAAAAATTAGAAGACCATA+AGG | + | chr7.1:52166384-52166403 | None:intergenic | 30.0% | |
| GCTCTACAATCTTCATTATT+TGG | + | chr7.1:52165792-52165811 | None:intergenic | 30.0% | |
| GTTAACTCATCCTTTCAATT+TGG | - | chr7.1:52165828-52165847 | MS.gene010933:intron | 30.0% | |
| GTTGTAGTCTAAACAATTGA+GGG | - | chr7.1:52167115-52167134 | MS.gene010933:intron | 30.0% | |
| TAAAGTTGGGAAATCACAAA+AGG | - | chr7.1:52165869-52165888 | MS.gene010933:intron | 30.0% | |
| TACAACTTACCAAAGTAAAG+TGG | + | chr7.1:52166518-52166537 | None:intergenic | 30.0% | |
| TACATTCACATAAAAGTTGC+TGG | + | chr7.1:52166251-52166270 | None:intergenic | 30.0% | |
| TATGTATAGAGAGATGTGAT+AGG | - | chr7.1:52167513-52167532 | MS.gene010933:CDS | 30.0% | |
| TTCGATATGGAAAAGAAGAA+GGG | - | chr7.1:52167898-52167917 | MS.gene010933:intron | 30.0% | |
| TTTAAATTTGAACTCACAGG+TGG | - | chr7.1:52167997-52168016 | MS.gene010933:intron | 30.0% | |
| ! | AAGTGCGTAGAATCAATTTT+GGG | + | chr7.1:52166094-52166113 | None:intergenic | 30.0% |
| ! | ACTACAACTTTTCCAAGTAA+AGG | + | chr7.1:52167103-52167122 | None:intergenic | 30.0% |
| ! | ATGGTCTTCTAATTTTTGCA+GGG | - | chr7.1:52166385-52166404 | MS.gene010933:intron | 30.0% |
| ! | GTTTTCTCATAAGGATTTGT+CGG | - | chr7.1:52167231-52167250 | MS.gene010933:intron | 30.0% |
| ! | TAAGTGCGTAGAATCAATTT+TGG | + | chr7.1:52166095-52166114 | None:intergenic | 30.0% |
| ! | TATGGTCTTCTAATTTTTGC+AGG | - | chr7.1:52166384-52166403 | MS.gene010933:intron | 30.0% |
| !! | CTTGTTTTTCTAGATTGGAT+TGG | - | chr7.1:52166580-52166599 | MS.gene010933:intron | 30.0% |
| !! | GAAGGGAGATATTTATTTTC+AGG | - | chr7.1:52167915-52167934 | MS.gene010933:intron | 30.0% |
| !! | TAAGTTTGGGTTTTCTCATA+AGG | - | chr7.1:52167222-52167241 | MS.gene010933:intron | 30.0% |
| !! | TAGATTTTGACATGTTATGG+TGG | - | chr7.1:52166118-52166137 | MS.gene010933:intron | 30.0% |
| !! | TCTAGATTGGATTGGTTATA+TGG | - | chr7.1:52166588-52166607 | MS.gene010933:intron | 30.0% |
| !! | TTAGTTTGTGTTTGGTTTCA+CGG | - | chr7.1:52166060-52166079 | MS.gene010933:intron | 30.0% |
| !!! | TATTTGCTTTTTCTGATGCT+TGG | - | chr7.1:52167842-52167861 | MS.gene010933:intron | 30.0% |
| !!! | TATTTTCAGGTGTTAACTAG+TGG | - | chr7.1:52167928-52167947 | MS.gene010933:intron | 30.0% |
| !!! | TTATTTTTTTGGGTCAAGGA+CGG | + | chr7.1:52166867-52166886 | None:intergenic | 30.0% |
| AAGTATCATTCTCTAGCACA+AGG | - | chr7.1:52165627-52165646 | MS.gene010933:intron | 35.0% | |
| AATTTCCACTTTGAACCACT+TGG | + | chr7.1:52165549-52165568 | None:intergenic | 35.0% | |
| ACTACTACTCCCAAATTGAA+AGG | + | chr7.1:52165841-52165860 | None:intergenic | 35.0% | |
| AGTAGTTCATGTGGTAAAGT+TGG | - | chr7.1:52165855-52165874 | MS.gene010933:intron | 35.0% | |
| ATCATCTCACATCCTTTACT+TGG | - | chr7.1:52167088-52167107 | MS.gene010933:intron | 35.0% | |
| CCCATTCATAATCTATTGTG+AGG | - | chr7.1:52167000-52167019 | MS.gene010933:CDS | 35.0% | |
| CGGTAAGATTCTGCATAAAA+TGG | + | chr7.1:52168237-52168256 | None:intergenic | 35.0% | |
| CTTCGATATGGAAAAGAAGA+AGG | - | chr7.1:52167897-52167916 | MS.gene010933:intron | 35.0% | |
| CTTGCACAACTTCTAAGTTT+GGG | - | chr7.1:52167209-52167228 | MS.gene010933:intron | 35.0% | |
| GCATGATTGTTAGTAGTAGT+GGG | - | chr7.1:52166961-52166980 | MS.gene010933:CDS | 35.0% | |
| GTAGTTCATGTGGTAAAGTT+GGG | - | chr7.1:52165856-52165875 | MS.gene010933:intron | 35.0% | |
| GTGATCAAATGTATGCCTTA+TGG | - | chr7.1:52166366-52166385 | MS.gene010933:intron | 35.0% | |
| TCACTTCATGTAAAACCATG+TGG | - | chr7.1:52166024-52166043 | MS.gene010933:intron | 35.0% | |
| TCTTGCACAACTTCTAAGTT+TGG | - | chr7.1:52167208-52167227 | MS.gene010933:intron | 35.0% | |
| TGCATGATTGTTAGTAGTAG+TGG | - | chr7.1:52166960-52166979 | MS.gene010933:CDS | 35.0% | |
| TGTCTCATACCAAACATAGA+CGG | + | chr7.1:52167877-52167896 | None:intergenic | 35.0% | |
| TGTTAACTAGTGGAAGAGTT+TGG | - | chr7.1:52167938-52167957 | MS.gene010933:intron | 35.0% | |
| TTACAAGCTTTCCTTCATGA+AGG | + | chr7.1:52165217-52165236 | None:intergenic | 35.0% | |
| TTTGATAGAAGAGTTTGGGA+TGG | + | chr7.1:52167058-52167077 | None:intergenic | 35.0% | |
| ! | CAAGATTTGGTTACTGATGA+TGG | + | chr7.1:52166564-52166583 | None:intergenic | 35.0% |
| ! | CTTATTGACAGAAAGTGCAA+AGG | - | chr7.1:52165903-52165922 | MS.gene010933:intron | 35.0% |
| !! | AAAGAGTTGATGAAGCTAGA+AGG | - | chr7.1:52165739-52165758 | MS.gene010933:intron | 35.0% |
| !! | AAGAGTTGATGAAGCTAGAA+GGG | - | chr7.1:52165740-52165759 | MS.gene010933:intron | 35.0% |
| !! | GAGGAGATTTTGACACTTAT+TGG | - | chr7.1:52167164-52167183 | MS.gene010933:intron | 35.0% |
| !! | TTCTAGCTTCATCAACTCTT+TGG | + | chr7.1:52165740-52165759 | None:intergenic | 35.0% |
| AAGGATTTGTCGGATGTTGA+TGG | - | chr7.1:52167241-52167260 | MS.gene010933:intron | 40.0% | |
| AAGTGGAATTGCTTCACATG+AGG | + | chr7.1:52165170-52165189 | None:intergenic | 40.0% | |
| AATTTGAACTCACAGGTGGA+TGG | - | chr7.1:52168001-52168020 | MS.gene010933:intron | 40.0% | |
| ACTACTCAAAGCCTTCATGA+AGG | - | chr7.1:52165203-52165222 | MS.gene010933:intron | 40.0% | |
| CAGGTTATACCGTCTATGTT+TGG | - | chr7.1:52167865-52167884 | MS.gene010933:intron | 40.0% | |
| CGAAGATGTGCACATGAAAA+TGG | + | chr7.1:52165686-52165705 | None:intergenic | 40.0% | |
| TAGACATGTCATCACACACA+GGG | - | chr7.1:52166812-52166831 | MS.gene010933:intron | 40.0% | |
| TGGTATGAGACACTTCGATA+TGG | - | chr7.1:52167885-52167904 | MS.gene010933:intron | 40.0% | |
| TTAGACATGTCATCACACAC+AGG | - | chr7.1:52166811-52166830 | MS.gene010933:intron | 40.0% | |
| TTTGGGAGTAGTAGTTCATG+TGG | - | chr7.1:52165846-52165865 | MS.gene010933:intron | 40.0% | |
| ! | CACTGTTCACATCTTTAGAG+AGG | - | chr7.1:52168104-52168123 | MS.gene010933:intron | 40.0% |
| ! | GCTTCATCAACTCTTTGGAA+AGG | + | chr7.1:52165735-52165754 | None:intergenic | 40.0% |
| ! | TATCTGAAGTAAGGCGAGTA+GGG | - | chr7.1:52166838-52166857 | MS.gene010933:intron | 40.0% |
| ! | TGTTGAACGCCACTTTACTT+TGG | - | chr7.1:52166506-52166525 | MS.gene010933:intron | 40.0% |
| ! | TTTGTGTTTGGTTTCACGGT+GGG | - | chr7.1:52166064-52166083 | MS.gene010933:intron | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | - | chr7.1:52166474-52166493 | MS.gene010933:intron | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | - | chr7.1:52166473-52166492 | MS.gene010933:intron | 40.0% |
| !! | TGGATGGAAAGCATTTGCAA+AGG | - | chr7.1:52168017-52168036 | MS.gene010933:intron | 40.0% |
| AGACTCCAAGTGGTTCAAAG+TGG | - | chr7.1:52165541-52165560 | MS.gene010933:CDS | 45.0% | |
| CCCATGACAACAACAAAGGA+TGG | + | chr7.1:52166477-52166496 | None:intergenic | 45.0% | |
| CTTAACTATGCCGGTGACTA+TGG | - | chr7.1:52167397-52167416 | MS.gene010933:intron | 45.0% | |
| TCAAGTCGACATGCCAAGTA+AGG | + | chr7.1:52165336-52165355 | None:intergenic | 45.0% | |
| TGCTCCCATGACAACAACAA+AGG | + | chr7.1:52166481-52166500 | None:intergenic | 45.0% | |
| ! | ACAGGGACGTATCTGAAGTA+AGG | - | chr7.1:52166829-52166848 | MS.gene010933:intron | 45.0% |
| ! | GTATCTGAAGTAAGGCGAGT+AGG | - | chr7.1:52166837-52166856 | MS.gene010933:intron | 45.0% |
| ! | GTTTGTGTTTGGTTTCACGG+TGG | - | chr7.1:52166063-52166082 | MS.gene010933:intron | 45.0% |
| ! | TTGTGTTTGGTTTCACGGTG+GGG | - | chr7.1:52166065-52166084 | MS.gene010933:intron | 45.0% |
| !! | AAAGCGGGTTGAATGTGAAG+TGG | + | chr7.1:52166286-52166305 | None:intergenic | 45.0% |
| !!! | TGCTTTTTCTGATGCTTGGC+AGG | - | chr7.1:52167846-52167865 | MS.gene010933:intron | 45.0% |
| AGAAGGGTCTGCAACGTTCA+AGG | - | chr7.1:52165756-52165775 | MS.gene010933:intron | 50.0% | |
| TCAACAGTCGCCATAGTCAC+CGG | + | chr7.1:52167410-52167429 | None:intergenic | 50.0% | |
| ! | GTTTGGGATGGTGCAAGACT+AGG | + | chr7.1:52167046-52167065 | None:intergenic | 50.0% |
| !! | ACTTGGCATGTCGACTTGAG+CGG | - | chr7.1:52165337-52165356 | MS.gene010933:CDS | 50.0% |
| GTGGAAGAGTTTGGCCTGCA+AGG | - | chr7.1:52167947-52167966 | MS.gene010933:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 52165152 | 52168284 | 52165152 | ID=MS.gene010933 |
| chr7.1 | mRNA | 52165152 | 52168284 | 52165152 | ID=MS.gene010933.t1;Parent=MS.gene010933 |
| chr7.1 | exon | 52168204 | 52168284 | 52168204 | ID=MS.gene010933.t1.exon1;Parent=MS.gene010933.t1 |
| chr7.1 | CDS | 52168204 | 52168284 | 52168204 | ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1 |
| chr7.1 | exon | 52167512 | 52167827 | 52167512 | ID=MS.gene010933.t1.exon2;Parent=MS.gene010933.t1 |
| chr7.1 | CDS | 52167512 | 52167827 | 52167512 | ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1 |
| chr7.1 | exon | 52166909 | 52167030 | 52166909 | ID=MS.gene010933.t1.exon3;Parent=MS.gene010933.t1 |
| chr7.1 | CDS | 52166909 | 52167030 | 52166909 | ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1 |
| chr7.1 | exon | 52165274 | 52165568 | 52165274 | ID=MS.gene010933.t1.exon4;Parent=MS.gene010933.t1 |
| chr7.1 | CDS | 52165274 | 52165568 | 52165274 | ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1 |
| chr7.1 | exon | 52165152 | 52165189 | 52165152 | ID=MS.gene010933.t1.exon5;Parent=MS.gene010933.t1 |
| chr7.1 | CDS | 52165152 | 52165189 | 52165152 | ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1 |
| Gene Sequence |
| Protein sequence |
