AlfalfaGEDB | MS.gene010933

M. sativa cultivar XinJiangDaYe / MS.gene010933

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010933.t1	AES73017.1	63.2	315	69	5	1	271	1	312	3.90E-99	371.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010933.t1	Q8L3W1	26.8	284	150	8	28	261	64	339	1.4e-12	75.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010933.t1	G7J3B6	63.2	315	69	5	1	271	1	312	2.8e-99	371.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene010933.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010933.t1	MTR_3g098790	63.492	315	68	5	1	271	1	312	9.16e-132	377
MS.gene010933.t1	MTR_7g050580	56.269	327	87	6	1	283	1	315	8.10e-110	320
MS.gene010933.t1	MTR_7g050710	54.037	322	95	6	1	271	1	320	2.48e-108	317
MS.gene010933.t1	MTR_7g050590	66.667	252	74	6	28	271	44	293	7.67e-108	315
MS.gene010933.t1	MTR_7g050560	51.506	332	95	7	1	283	1	315	8.47e-100	295
MS.gene010933.t1	MTR_7g050720	52.174	322	87	12	1	260	1	317	2.14e-92	276
MS.gene010933.t1	MTR_1g035460	35.769	260	130	7	28	262	44	291	2.41e-37	136
MS.gene010933.t1	MTR_1g108780	34.118	255	131	8	28	261	55	293	3.31e-36	134
MS.gene010933.t1	MTR_8g103940	34.766	256	127	9	28	261	97	334	2.43e-34	130
MS.gene010933.t1	MTR_7g050640	48.673	113	15	1	1	70	1	113	3.04e-24	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010933.t1	AT1G49480	33.333	126	75	4	134	258	104	221	2.52e-13	68.2
MS.gene010933.t1	AT1G49480	33.333	126	75	4	134	258	104	221	2.52e-13	68.2
MS.gene010933.t1	AT1G49480	33.333	126	75	4	134	258	104	221	2.52e-13	68.2
MS.gene010933.t1	AT3G18990	32.867	143	84	5	134	272	219	353	3.92e-13	69.3
MS.gene010933.t1	AT3G18990	33.333	129	77	4	134	261	219	339	6.65e-13	68.6

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Find 42 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTTGATGAAGCTAGA+AGG	0.392608	7.1:-52167675	MS.gene010933:CDS
AAGAGTTGATGAAGCTAGAA+GGG	0.574479	7.1:-52167674	MS.gene010933:CDS
AAGGACAATAACTTAAAAGT+TGG	0.486873	7.1:-52165378	MS.gene010933:CDS
AAGTATCATTCTCTAGCACA+AGG	0.664475	7.1:-52167787	MS.gene010933:CDS
AAGTGGAATTGCTTCACATG+AGG	0.625242	7.1:+52168247	None:intergenic
AATTTGAACTCACAGGTGGA+TGG	0.546820	7.1:-52165413	MS.gene010933:CDS
ACATTTAAATTTGAACTCAC+AGG	0.533222	7.1:-52165420	MS.gene010933:CDS
ACTACTACTCCCAAATTGAA+AGG	0.605806	7.1:+52167576	None:intergenic
ACTACTCAAAGCCTTCATGA+AGG	0.596715	7.1:-52168211	MS.gene010933:CDS
AGAAGGGTCTGCAACGTTCA+AGG	0.457179	7.1:-52167658	MS.gene010933:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAACAAGACCTTACT+TGG	-	chr7.1:52165320-52165339	MS.gene010933:CDS	30.0%
AAATATGGTTTCAAAAGGGT+TGG	-	chr7.1:52165592-52165611	MS.gene010933:intron	30.0%
AACATTCGGATTACAATTTG+CGG	+	chr7.1:52167357-52167376	None:intergenic	30.0%
AAGATACAAATCATAGCTTG+AGG	+	chr7.1:52166190-52166209	None:intergenic	30.0%
AATAATCTAGCAATTCCACA+TGG	+	chr7.1:52166042-52166061	None:intergenic	30.0%
AATGCTGACATTGACATATT+TGG	+	chr7.1:52167311-52167330	None:intergenic	30.0%
ACCTCACAATAGATTATGAA+TGG	+	chr7.1:52167004-52167023	None:intergenic	30.0%
AGTTGTAGTCTAAACAATTG+AGG	-	chr7.1:52167114-52167133	MS.gene010933:intron	30.0%
ATATATCTAAAGACTCCAAG+TGG	-	chr7.1:52165531-52165550	MS.gene010933:CDS	30.0%
CCTCACAATAGATTATGAAT+GGG	+	chr7.1:52167003-52167022	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	52165152	52168284	52165152	ID=MS.gene010933
chr7.1	mRNA	52165152	52168284	52165152	ID=MS.gene010933.t1;Parent=MS.gene010933
chr7.1	exon	52168204	52168284	52168204	ID=MS.gene010933.t1.exon1;Parent=MS.gene010933.t1
chr7.1	CDS	52168204	52168284	52168204	ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1
chr7.1	exon	52167512	52167827	52167512	ID=MS.gene010933.t1.exon2;Parent=MS.gene010933.t1
chr7.1	CDS	52167512	52167827	52167512	ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1
chr7.1	exon	52166909	52167030	52166909	ID=MS.gene010933.t1.exon3;Parent=MS.gene010933.t1
chr7.1	CDS	52166909	52167030	52166909	ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1
chr7.1	exon	52165274	52165568	52165274	ID=MS.gene010933.t1.exon4;Parent=MS.gene010933.t1
chr7.1	CDS	52165274	52165568	52165274	ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1
chr7.1	exon	52165152	52165189	52165152	ID=MS.gene010933.t1.exon5;Parent=MS.gene010933.t1
chr7.1	CDS	52165152	52165189	52165152	ID=cds.MS.gene010933.t1;Parent=MS.gene010933.t1

Gene Sequence

>MS.gene010933

ATGGCTAGTGAATTTCCTCATGTGAAGCAATTCCACTTTTTCAAGATCATAACTACTCAAAGCCTTCATGAAGGAAAGCTTGTAAGTCATTGACTTAAATTTTTCGTTCATGTTGTTTATGTTTCTTTATCTTATAATAAGATTGTCTTGTTACCTTGTTTTTTGCTTAAAGAAAACAAGACCTTACTTGGCATGTCGACTTGAGCGGTCCGATTTTACATCTCTATAATTTTTTTATGAGCCATCTCTATAAAATTGATAGATGTTTCTTAAAGTAATGCAAAATACTTATCATACATGTTGATCAAGTTTAATAATAAATTGACAGATGATTCCAAGAAAGTTTGAAGAGAATTATAGAAATTGTTTACCAAATATTATATATCTAAAGACTCCAAGTGGTTCAAAGTGGAAATTAGATTTGGTAAAAAGTGATGGAAAAATATGGTTTCAAAAGGGTTGGAAAGAATTTGTGAAGTATCATTCTCTAGCACAAGGCCATCTTCTTCTTTTCAAATATGAAAGAACTTGCCATTTTCATGTGCACATCTTCGATAAGAGTGCCTTAGAGATAAAATATCCTTTCCAAAGAGTTGATGAAGCTAGAAGGGTCTGCAACGTTCAAGGAAATAAACCTCCAAATAATGAAGATTGTAGAGCAAGTCAAAAGAGAAAAGTTAACTCATCCTTTCAATTTGGGAGTAGTAGTTCATGTGGTAAAGTTGGGAAATCACAAAAGGTAGCTGTGCATCTTATTGACAGAAAGTGCAAAGGTATAAGATTTTGTATATTCGTCTCATGAGAGCTTCATAAGTTAACCTAAATTATTAGCTTTTGTTCTCTTCAATTCATGTTATCATTTTAAATGGCATTCACTTCATGTAAAACCATGTGGAATTGCTAGATTATTAGTTTGTGTTTGGTTTCACGGTGGGGAGACCCAAAATTGATTCTACGCACTTAAAATAGATTTTGACATGTTATGGTGGTGTCGATTGTTATTGATTTTGATTTTGTCTTTAGAATTGATCGTAACCTCAAGCTATGATTTGTATCTTCTGAATCTAAAAGTGATTCTTACACTCCAATTTATTATCCAGCAACTTTTATGTGAATGTATCAAAACATAAACCACTTCACATTCAACCCGCTTTCAACTAAAATCATTTTTACAATATCAATTTGTTGAAAATAAATTTTTTCAAACATGAAAGGTGATCAAATGTATGCCTTATGGTCTTCTAATTTTTGCAGGGAAACAAGTGATTACTGCTGAAAAAGTTAGAACTCTTGAAAGAGCAAAATCTTTCAAAACTTGTAGTCCATCCTTTGTTGTTGTCATGGGAGCATCATATGTTGAACGCCACTTTACTTTGGTAAGTTGTAGAACATAAGTTGATACTTGATATCCATCATCAGTAACCAAATCTTGTTTTTCTAGATTGGATTGGTTATATGGATCAATTTATGCAATTTTTTTTTTCTTTCTCCAGTCTTTACTAGATTAAGTAGTGAGAAACATATATTGGTAATTTTAAAATAATATTAAGTCTACACTCGGATAAATCAGCGTAAAATATTATTTTATCAACTAATTAATAACATTTGCAATTTGAAAAAAAAAAGTCAGTTTAAATATTTTTTTACACAATTATTAAATTAGACATGTCATCACACACAGGGACGTATCTGAAGTAAGGCGAGTAGGGTGACCGTCCTTGACCCAAAAAAATAAGTAAGAAATTTAGGTCCAAAAATAAATTAGGGGTTCATTAAGCCATAAAACAATTACTTAATTTCTAAAGGGATGCATGATTGTTAGTAGTAGTGGGCTTAGTTTTTTGTTGACCCATTCATAATCTATTGTGAGGTTATAATGGGAGTTCAAATACCTAGTCTTGCACCATCCCAAACTCTTCTATCAAAATCAAAAGAAATCATCTCACATCCTTTACTTGGAAAAGTTGTAGTCTAAACAATTGAGGGTTATATGTCATTACACATTTTTATGAGAGGAGATTTTGACACTTATTGGATAAATTATGAATTAAAAAAATCTTGCACAACTTCTAAGTTTGGGTTTTCTCATAAGGATTTGTCGGATGTTGATGGAAATGATCTTTTTTTTTGAATTGAAAGTGTTGCAAATATCTTCGCCAAATATGTCAATGTCAGCATTTGAAATTCTCGAGTTTGTCAAAGCCGCAAATTGTAATCCGAATGTTTCAATTGCTTATAAAATTCTCTTAACTATGCCGGTGACTATGGCGACTGTTGAAAGAAGTTTTTCGAAGTTAAAATTATTGAAAAATTACTTGAGATCAAAAATGTCACAAGAAAGATTGAATGATCTAACCATTTTATGTATAGAGAGATGTGATAGGTAATATTGATGTTGACACAATTATTAGTGACTTTGCATCTAGAAATGTTTGTAAGAATTGTTTTGTATAAACACTTGGATATTAAATAAAAAGCTTGGATGAATTTTGATCTCTTTTTTAGATAATTTTTATCATAGTAAAAACTATCTTCTTCAAGCAAATTGTTTTCACACTTTAGAAATCTAATAATTAGATATGCATAGAGATACCTTAAATATTATAGGAAATAATAAAGTGATATCATGGTAAAATATAATTAGATAACTAGGTATGCATATACTTTTCAACAAGAACTATTTTTATGCATATTTGCTTTTTCTGATGCTTGGCAGGTTATACCGTCTATGTTTGGTATGAGACACTTCGATATGGAAAAGAAGAAGGGAGATATTTATTTTCAGGTGTTAACTAGTGGAAGAGTTTGGCCTGCAAGGTATATAATTAAGATGAGCAGAACAACATTTAAATTTGAACTCACAGGTGGATGGAAAGCATTTGCAAAGGACAATAACTTAAAAGTTGGTGATGTTTGTAACTTTGAGCTCATCTCTAGCACTTCACTTACGTTCACTGTTCACATCTTTAGAGAGGCAGAAAATGACAACACAAATTGTTCAATATCTCAAAGTAAGTTTGGTGATTAATTTTCATCTCAAATTATTTCACCACATTCTCATATAACAAATATATGTATTCTTCCATTTTATGCAGAATCTTACCGAATAAAAGAAGAAGATATTCAAGGATGA

Protein sequence

>MS.gene010933.t1

MASEFPHVKQFHFFKIITTQSLHEGKLGWKEFVKYHSLAQGHLLLFKYERTCHFHVHIFDKSALEIKYPFQRVDEARRVCNVQGNKPPNNEDCRASQKRKVNSSFQFGSSSSCGKVGKSQKVAVHLIDRKCKGKQVITAEKVRTLERAKSFKTCSPSFVVVMGASYVERHFTLVIPSMFGMRHFDMEKKKGDIYFQVLTSGRVWPARYIIKMSRTTFKFELTGGWKAFAKDNNLKVGDVCNFELISSTSLTFTVHIFREAENDNTNCSISQKSYRIKEEDIQG