AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010954

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010954.t1 MTR_7g050720 77.743 319 22 1 1 270 1 319 0.0 502
MS.gene010954.t1 MTR_3g098790 55.738 305 94 6 1 268 1 301 1.84e-105 309
MS.gene010954.t1 MTR_7g050580 54.392 296 103 6 1 268 1 292 1.15e-104 307
MS.gene010954.t1 MTR_7g050710 54.248 306 96 6 4 268 7 309 5.16e-102 300
MS.gene010954.t1 MTR_7g050560 53.952 291 103 7 4 268 7 292 1.27e-99 294
MS.gene010954.t1 MTR_7g050590 54.386 285 86 7 25 268 1 282 6.71e-96 284
MS.gene010954.t1 MTR_7g050640 74.336 113 26 1 1 110 1 113 1.89e-51 164
MS.gene010954.t1 MTR_1g108780 32.765 293 128 9 26 265 13 289 8.68e-42 149
MS.gene010954.t1 MTR_8g103940 32.468 308 140 8 10 265 39 330 1.10e-41 149
MS.gene010954.t1 MTR_3g061320 31.930 285 154 10 7 265 9 279 2.94e-35 128
MS.gene010954.t1 MTR_5g044670 31.104 299 150 10 10 263 16 303 8.06e-34 125
MS.gene010954.t1 MTR_3g061370 30.769 286 155 8 10 265 9 281 6.75e-31 116
MS.gene010954.t1 MTR_3g061310 29.110 292 159 9 7 265 9 285 2.55e-30 115
MS.gene010954.t1 MTR_3g061340 31.365 271 142 8 7 251 9 261 6.35e-30 114
MS.gene010954.t1 MTR_3g061330 32.653 245 122 6 3 207 5 246 1.07e-29 112
MS.gene010954.t1 MTR_3g061350 27.891 294 159 9 7 265 9 284 5.41e-29 111
MS.gene010954.t1 MTR_4g119990 29.808 312 152 9 9 266 14 312 1.16e-27 109
MS.gene010954.t1 MTR_6g043890 29.110 292 154 9 9 256 14 296 3.61e-27 107
MS.gene010954.t1 MTR_1g035620 30.249 281 160 9 7 260 6 277 5.92e-27 108
MS.gene010954.t1 MTR_1g050845 32.342 269 158 9 7 260 6 265 6.84e-27 110
MS.gene010954.t1 MTR_1g035460 52.874 87 41 0 25 111 1 87 7.30e-27 108
MS.gene010954.t1 MTR_1g035460 43.478 115 50 4 151 265 187 286 4.57e-17 80.5
MS.gene010954.t1 MTR_3g061290 49.020 102 50 1 7 108 9 108 5.03e-26 101
MS.gene010954.t1 MTR_5g070440 27.237 257 165 7 9 258 20 261 1.50e-24 99.8
MS.gene010954.t1 MTR_3g005480 27.236 246 157 6 9 251 20 246 1.90e-24 99.0
MS.gene010954.t1 MTR_3g005490 26.923 260 153 8 9 258 20 252 5.68e-24 97.8
MS.gene010954.t1 MTR_1g035640 31.164 292 156 12 1 262 1 277 1.22e-23 99.8
MS.gene010954.t1 MTR_3g005495 30.435 253 142 8 9 256 242 465 1.05e-22 97.1
MS.gene010954.t1 MTR_3g005495 25.991 227 130 5 26 252 29 217 7.80e-19 85.9
MS.gene010954.t1 MTR_1g035570 30.035 283 150 10 19 264 14 285 6.12e-22 94.4
MS.gene010954.t1 MTR_4g068320 41.818 110 62 1 5 112 1 110 7.22e-22 94.4
MS.gene010954.t1 MTR_4g068320 31.250 192 106 6 93 267 210 392 1.84e-15 75.9
MS.gene010954.t1 MTR_3g005460 26.812 276 172 8 9 267 261 523 1.12e-21 94.4
MS.gene010954.t1 MTR_3g005460 25.591 254 158 5 9 262 24 246 6.16e-21 92.4
MS.gene010954.t1 MTR_1g021360 25.874 286 167 5 21 267 193 472 2.47e-21 93.2
MS.gene010954.t1 MTR_1g021360 40.506 79 47 0 21 99 36 114 1.74e-11 64.3
MS.gene010954.t1 MTR_3g005420 28.629 248 159 6 9 251 288 522 3.62e-21 93.2
MS.gene010954.t1 MTR_3g005420 24.046 262 168 6 2 262 32 263 7.09e-14 71.6
MS.gene010954.t1 MTR_1g034240 42.718 103 59 0 6 108 3 105 6.38e-21 91.7
MS.gene010954.t1 MTR_1g034240 33.333 138 76 5 128 258 257 385 3.60e-13 69.3
MS.gene010954.t1 MTR_1g021435 24.699 332 163 8 3 251 15 342 2.50e-20 89.7
MS.gene010954.t1 MTR_6g061070 28.662 314 154 12 9 261 17 321 6.37e-20 89.4
MS.gene010954.t1 MTR_1g035650 41.346 104 59 1 5 108 4 105 3.32e-19 83.6
MS.gene010954.t1 MTR_3g061220 41.176 102 45 2 7 108 9 95 3.13e-18 78.6
MS.gene010954.t1 MTR_1g035480 36.585 123 75 2 9 131 16 135 3.36e-18 80.5
MS.gene010954.t1 MTR_1g033740 35.772 123 76 2 9 131 21 140 1.61e-17 79.0
MS.gene010954.t1 MTR_1g034210 41.053 95 56 0 10 104 7 101 3.95e-16 77.4
MS.gene010954.t1 MTR_1g034210 41.053 95 56 0 10 104 7 101 4.61e-16 77.4
MS.gene010954.t1 MTR_3g005440 34.906 106 66 1 26 131 36 138 9.57e-16 77.0
MS.gene010954.t1 MTR_3g005440 26.540 211 131 5 9 207 241 439 1.40e-14 73.6
MS.gene010954.t1 MTR_1g035440 38.462 104 63 1 9 111 14 117 1.34e-15 74.7
MS.gene010954.t1 MTR_1g021440 39.796 98 58 1 3 100 16 112 3.76e-15 73.9
MS.gene010954.t1 MTR_1g021440 39.796 98 58 1 3 100 16 112 4.46e-15 73.9
MS.gene010954.t1 MTR_1g021440 39.796 98 58 1 3 100 16 112 9.05e-15 73.9
MS.gene010954.t1 MTR_1g021440 39.796 98 58 1 3 100 16 112 9.18e-15 73.9
MS.gene010954.t1 MTR_1g021400 36.458 96 61 0 9 104 29 124 1.48e-14 73.2
MS.gene010954.t1 MTR_1g021320 39.560 91 55 0 9 99 24 114 3.52e-14 72.8
MS.gene010954.t1 MTR_1g021320 30.645 124 83 2 9 131 183 304 1.96e-13 70.5
MS.gene010954.t1 MTR_3g005420 24.046 262 168 6 2 262 13 244 7.34e-14 71.2
MS.gene010954.t1 MTR_1g035500 32.520 123 80 2 9 131 24 143 9.14e-14 68.6
MS.gene010954.t1 MTR_1g021410 40.741 81 48 0 21 101 33 113 1.84e-13 69.7
MS.gene010954.t1 MTR_1g021350 36.170 94 60 0 11 104 22 115 2.30e-13 69.3
MS.gene010954.t1 MTR_1g035510 38.318 107 63 2 25 131 1 104 3.13e-13 67.8
MS.gene010954.t1 MTR_1g021290 39.506 81 49 0 24 104 169 249 3.61e-13 68.9
MS.gene010954.t1 MTR_1g021290 34.375 96 62 1 9 104 27 121 1.14e-12 67.4
MS.gene010954.t1 MTR_1g021270 33.981 103 67 1 9 111 15 116 1.81e-12 67.4
MS.gene010954.t1 MTR_1g035470 39.583 96 55 2 25 120 1 93 3.53e-12 63.2
MS.gene010954.t1 MTR_1g021380 35.052 97 62 1 3 99 15 110 6.76e-12 65.1
MS.gene010954.t1 MTR_1g021330 29.487 156 101 2 9 158 25 177 9.16e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010954.t1 AT3G18960 40.909 110 65 0 4 113 24 133 7.54e-23 93.2
MS.gene010954.t1 AT3G18960 40.909 110 65 0 4 113 24 133 8.33e-23 93.6
MS.gene010954.t1 AT4G01580 37.815 119 74 0 4 122 24 142 1.70e-22 92.0
MS.gene010954.t1 AT3G18990 44.660 103 57 0 6 108 2 104 1.83e-22 95.1
MS.gene010954.t1 AT3G18990 31.013 158 89 5 107 254 178 325 1.06e-12 67.4
MS.gene010954.t1 AT3G18990 44.231 104 58 0 5 108 1 104 3.11e-22 95.1
MS.gene010954.t1 AT3G18990 31.013 158 89 5 107 254 178 325 1.26e-12 67.4
MS.gene010954.t1 AT1G49475 39.815 108 64 1 10 117 34 140 1.80e-20 86.7
MS.gene010954.t1 AT3G18960 45.455 88 48 0 26 113 9 96 1.61e-19 83.6
MS.gene010954.t1 AT4G31640 26.953 256 156 10 9 260 13 241 3.76e-16 77.8
MS.gene010954.t1 AT4G31650 26.891 238 147 7 26 260 28 241 4.04e-13 69.3
MS.gene010954.t1 AT1G49480 35.294 119 66 4 137 254 102 210 7.00e-13 66.6
MS.gene010954.t1 AT1G49480 35.294 119 66 4 137 254 102 210 7.00e-13 66.6
MS.gene010954.t1 AT1G49480 35.294 119 66 4 137 254 102 210 7.00e-13 66.6
MS.gene010954.t1 AT4G33280 41.176 85 49 1 21 104 34 118 1.12e-12 67.0
MS.gene010954.t1 AT4G33280 39.604 101 57 2 8 104 18 118 1.77e-12 67.0
MS.gene010954.t1 AT4G33280 39.604 101 57 2 8 104 18 118 2.58e-12 66.2
MS.gene010954.t1 AT4G31630 25.926 270 168 8 1 254 1 254 4.42e-11 63.2
MS.gene010954.t1 AT4G31680 26.820 261 163 11 2 260 4 238 5.61e-11 62.8
MS.gene010954.t1 AT4G31690 26.953 256 157 10 1 252 1 230 8.17e-11 61.6

Find 52 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTGCCTTTCCTAATT+AGG 0.208443 7.1:-51430675 None:intergenic
CGAAGATGTGCACTTCAAAA+TGG 0.226194 7.1:-51429277 None:intergenic
ATTCATCTTAGGTTATTAAA+TGG 0.226202 7.1:+51430631 MS.gene010954:CDS
TATTTCTCCACAAACTTTCT+TGG 0.252264 7.1:-51429080 None:intergenic
CTTCATTGTTCGCATCTTTA+CGG 0.269581 7.1:+51430813 MS.gene010954:CDS
TTTGGTAAAAGACACTTATT+AGG 0.278617 7.1:+51430586 MS.gene010954:CDS
AGAAAGTTTGTGGAGAAATA+TGG 0.293086 7.1:+51429083 MS.gene010954:CDS
ACCTCCGAATGATGAAGATT+TGG 0.302065 7.1:+51429376 MS.gene010954:CDS
GGTTATTAAATGGGAGAGTT+TGG 0.317803 7.1:+51430641 MS.gene010954:CDS
AAGATCGTTGGATACCCTTT+TGG 0.336100 7.1:-51429345 None:intergenic
TTCCTAATTAGGTACCTTGC+AGG 0.344093 7.1:-51430664 None:intergenic
AAAAGACACTTATTAGGTTT+AGG 0.347950 7.1:+51430592 MS.gene010954:CDS
GGCCTGCAAGGTACCTAATT+AGG 0.348434 7.1:+51430662 MS.gene010954:CDS
CAGAACATACCAAGTGAGTT+TGG 0.360251 7.1:+51430568 MS.gene010954:intron
AGCAAGGAGATATTCATCTT+AGG 0.368678 7.1:+51430620 MS.gene010954:CDS
CCTCCGAATGATGAAGATTT+GGG 0.375708 7.1:+51429377 MS.gene010954:CDS
ATTTCTCCACAAACTTTCTT+GGG 0.389419 7.1:-51429079 None:intergenic
TGCAAAGTGGAGATTAGATT+TGG 0.413094 7.1:+51429148 MS.gene010954:CDS
CATTGATGCTGCTTGTAATC+TGG 0.414628 7.1:+51429846 MS.gene010954:CDS
TGGACGCATGACAGCAATAA+AGG 0.428279 7.1:-51429818 None:intergenic
TTCATCTTAGGTTATTAAAT+GGG 0.428424 7.1:+51430632 MS.gene010954:CDS
TTTGGCTTCAACTCTTTGGA+AGG 0.438430 7.1:-51429327 None:intergenic
AAATATGGTTTCAAAAGGGT+TGG 0.440218 7.1:+51429186 MS.gene010954:CDS
TCCAAAGAGTTGAAGCCAAA+AGG 0.444147 7.1:+51429330 MS.gene010954:CDS
AAAAGGGTATCCAACGATCT+TGG 0.458573 7.1:+51429347 MS.gene010954:CDS
TTACAAGCTTTCCTTGATGA+AGG 0.460972 7.1:-51428923 None:intergenic
TCTCCCAAATCTTCATCATT+CGG 0.472378 7.1:-51429380 None:intergenic
GAAGATGTGCACTTCAAAAT+GGG 0.484263 7.1:-51429276 None:intergenic
ATTAGGAAAGGCAATAGAAA+AGG 0.485719 7.1:+51430679 MS.gene010954:CDS
TTTGTGGAGAAATATGGAAA+AGG 0.487637 7.1:+51429089 MS.gene010954:CDS
CATATTTGAAAAGCAGAAGA+TGG 0.487743 7.1:-51429244 None:intergenic
AATCTCCACTTTGCACCACT+TGG 0.487838 7.1:-51429140 None:intergenic
GGTGATCCCAAGAAAGTTTG+TGG 0.488942 7.1:+51429073 MS.gene010954:intron
CCAAAGAGTTGAAGCCAAAA+GGG 0.493381 7.1:+51429331 MS.gene010954:CDS
CGTAAAGATGCGAACAATGA+AGG 0.495472 7.1:-51430812 None:intergenic
TGGCTTCAACTCTTTGGAAG+GGG 0.496214 7.1:-51429325 None:intergenic
TTGGCTTCAACTCTTTGGAA+GGG 0.496973 7.1:-51429326 None:intergenic
TTGAAATGTACTCAGGTGAA+TGG 0.499761 7.1:+51430710 MS.gene010954:CDS
AAGGTAAGTATAGTGCTAGT+AGG 0.504595 7.1:-51430793 None:intergenic
CATAGAGTTTGCTCTGTCAA+AGG 0.505840 7.1:-51429779 None:intergenic
AGGTTTATTGCCAAGATCGT+TGG 0.509044 7.1:-51429357 None:intergenic
GAAGACAACAACTTGAAAGT+TGG 0.520581 7.1:+51430745 MS.gene010954:CDS
CAAGCAGCATCAATGTATGA+TGG 0.531742 7.1:-51429838 None:intergenic
ATGGGAGAGTTTGGCCTGCA+AGG 0.535413 7.1:+51430650 MS.gene010954:CDS
CCCAAATCTTCATCATTCGG+AGG 0.550009 7.1:-51429377 None:intergenic
AAGTATCATTCTTTATCTCA+AGG 0.553311 7.1:+51429221 MS.gene010954:CDS
CGCATGACAGCAATAAAGGA+TGG 0.564569 7.1:-51429814 None:intergenic
GAAAGATTTGAAATGTACTC+AGG 0.577875 7.1:+51430703 MS.gene010954:CDS
TGTGATCAAAGCCTTCATCA+AGG 0.598883 7.1:+51428912 MS.gene010954:CDS
GCAAGGTACCTAATTAGGAA+AGG 0.619850 7.1:+51430667 MS.gene010954:CDS
AGACTCCAAGTGGTGCAAAG+TGG 0.629081 7.1:+51429135 MS.gene010954:CDS
ATATATCTAAAGACTCCAAG+TGG 0.664356 7.1:+51429125 MS.gene010954:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACCATATTAATATAA+CGG - chr7.1:51429044-51429063 None:intergenic 10.0%
!!! ACAAATATTTTAATTGTAAA+TGG - chr7.1:51429019-51429038 None:intergenic 10.0%
!!! ATTTTTAATCCTTTTTATTT+TGG + chr7.1:51430242-51430261 MS.gene010954:intron 10.0%
!!! TTTTTAATCCTTTTTATTTT+GGG + chr7.1:51430243-51430262 MS.gene010954:intron 10.0%
!! TAATAGATCAATGAAAATTA+TGG + chr7.1:51429697-51429716 MS.gene010954:intron 15.0%
!! TATTTGTAGTTAAATATGTT+TGG + chr7.1:51430123-51430142 MS.gene010954:intron 15.0%
!!! ATTTTTGTTTTGAAGAAAAT+TGG + chr7.1:51430292-51430311 MS.gene010954:intron 15.0%
!!! GTTAATCTTTATTGATAATT+TGG + chr7.1:51430339-51430358 MS.gene010954:intron 15.0%
!! ACATATGATCTTGAAAAAAT+GGG - chr7.1:51428895-51428914 None:intergenic 20.0%
!! ATATGGTTTAATTAATTGAC+AGG + chr7.1:51429052-51429071 MS.gene010954:intron 20.0%
!! ATTCATCTTAGGTTATTAAA+TGG + chr7.1:51430631-51430650 MS.gene010954:CDS 20.0%
!! ATTGGTTAAGTTTCATATTA+TGG + chr7.1:51429642-51429661 MS.gene010954:intron 20.0%
!! ATTTACTTTCACTTTATGAT+TGG + chr7.1:51429624-51429643 MS.gene010954:intron 20.0%
!! GGTCTATAAATAATGAAAAA+TGG + chr7.1:51430264-51430283 MS.gene010954:intron 20.0%
!! TAAGTCCATATAAAATTGTT+TGG - chr7.1:51430180-51430199 None:intergenic 20.0%
!! TTCATCTTAGGTTATTAAAT+GGG + chr7.1:51430632-51430651 MS.gene010954:CDS 20.0%
!! TTGTTTCCGTTATATTAATA+TGG + chr7.1:51429035-51429054 MS.gene010954:intron 20.0%
!! TTTATAGACCCAAAATAAAA+AGG - chr7.1:51430254-51430273 None:intergenic 20.0%
!! TTTGATCAGAGATATTTATA+GGG - chr7.1:51430150-51430169 None:intergenic 20.0%
!!! AAGGTCATAACTTTTTTTAA+TGG + chr7.1:51429895-51429914 MS.gene010954:intron 20.0%
!!! AATATTGACAAAAAGTGTAA+AGG + chr7.1:51429521-51429540 MS.gene010954:intron 20.0%
!!! AATTTGGTAATTTGTTATAG+TGG - chr7.1:51430076-51430095 None:intergenic 20.0%
!!! TAAAAAGTGATGGAAAAATA+TGG + chr7.1:51429171-51429190 MS.gene010954:CDS 20.0%
!!! TAACTTTTTTTAATGGATGA+AGG + chr7.1:51429902-51429921 MS.gene010954:intron 20.0%
!!! TTAGTCCAAACAATTTTATA+TGG + chr7.1:51430172-51430191 MS.gene010954:intron 20.0%
!!! TTTTGATCAGAGATATTTAT+AGG - chr7.1:51430151-51430170 None:intergenic 20.0%
! AAAAGACACTTATTAGGTTT+AGG + chr7.1:51430592-51430611 MS.gene010954:CDS 25.0%
! AAGTATCATTCTTTATCTCA+AGG + chr7.1:51429221-51429240 MS.gene010954:CDS 25.0%
! AGCTTAAGAAAGAAATTACA+TGG - chr7.1:51428989-51429008 None:intergenic 25.0%
! AGTATCAGTAAATACATTGT+CGG - chr7.1:51430517-51430536 None:intergenic 25.0%
! ATCAATGAAAATTATGGCTT+AGG + chr7.1:51429703-51429722 MS.gene010954:intron 25.0%
! CAACAAAAGCTTGAAAAAAA+AGG - chr7.1:51428965-51428984 None:intergenic 25.0%
! CACATATGATCTTGAAAAAA+TGG - chr7.1:51428896-51428915 None:intergenic 25.0%
! GAAAAAAAAGGTAAATGAGT+GGG - chr7.1:51428953-51428972 None:intergenic 25.0%
! GGAAAAATATGGTTTCAAAA+GGG + chr7.1:51429182-51429201 MS.gene010954:CDS 25.0%
! TAAAGTTAGGAAATTGGAAA+AGG + chr7.1:51429484-51429503 MS.gene010954:intron 25.0%
! TCAATGAAAATTATGGCTTA+GGG + chr7.1:51429704-51429723 MS.gene010954:intron 25.0%
! TGAAAAAAAAGGTAAATGAG+TGG - chr7.1:51428954-51428973 None:intergenic 25.0%
! TGGAAAAATATGGTTTCAAA+AGG + chr7.1:51429181-51429200 MS.gene010954:CDS 25.0%
! TTTAATCAACCATGTGAAAT+TGG + chr7.1:51429446-51429465 MS.gene010954:intron 25.0%
! TTTGGTAAAAGACACTTATT+AGG + chr7.1:51430586-51430605 MS.gene010954:CDS 25.0%
!! TTAGATTTGGTAAAAAGTGA+TGG + chr7.1:51429161-51429180 MS.gene010954:CDS 25.0%
!!! TTGTTATAGTGGTTTTTCAA+GGG - chr7.1:51430065-51430084 None:intergenic 25.0%
!!! TTTGTTATAGTGGTTTTTCA+AGG - chr7.1:51430066-51430085 None:intergenic 25.0%
AAATATGGTTTCAAAAGGGT+TGG + chr7.1:51429186-51429205 MS.gene010954:CDS 30.0%
AATACTATTGACCCACTTAA+TGG - chr7.1:51430103-51430122 None:intergenic 30.0%
AGAAAGTTTGTGGAGAAATA+TGG + chr7.1:51429083-51429102 MS.gene010954:CDS 30.0%
ATACTATTGACCCACTTAAT+GGG - chr7.1:51430102-51430121 None:intergenic 30.0%
ATATATCTAAAGACTCCAAG+TGG + chr7.1:51429125-51429144 MS.gene010954:CDS 30.0%
ATGATCTTGAAAAAATGGGA+TGG - chr7.1:51428891-51428910 None:intergenic 30.0%
ATTAGGAAAGGCAATAGAAA+AGG + chr7.1:51430679-51430698 MS.gene010954:CDS 30.0%
ATTTCTCCACAAACTTTCTT+GGG - chr7.1:51429082-51429101 None:intergenic 30.0%
CATATTTGAAAAGCAGAAGA+TGG - chr7.1:51429247-51429266 None:intergenic 30.0%
CTGTGTTAAAGTTAGGAAAT+TGG + chr7.1:51429478-51429497 MS.gene010954:intron 30.0%
CTTTAAGCAAAACCTTTGTT+TGG - chr7.1:51429878-51429897 None:intergenic 30.0%
GAATGAAAAGCTAATAACTC+AGG - chr7.1:51429601-51429620 None:intergenic 30.0%
TATTTCTCCACAAACTTTCT+TGG - chr7.1:51429083-51429102 None:intergenic 30.0%
TTCTATTGCCTTTCCTAATT+AGG - chr7.1:51430678-51430697 None:intergenic 30.0%
TTTGTGGAGAAATATGGAAA+AGG + chr7.1:51429089-51429108 MS.gene010954:CDS 30.0%
! AATGTTTTACACTGTCAACA+AGG + chr7.1:51430399-51430418 MS.gene010954:intron 30.0%
! ACCAAATTTTACCCATTAAG+TGG + chr7.1:51430088-51430107 MS.gene010954:intron 30.0%
! CAAACAAAGGTTTTGCTTAA+AGG + chr7.1:51429876-51429895 MS.gene010954:intron 30.0%
! CAGATTTGTGGTATTTTGTA+AGG + chr7.1:51430203-51430222 MS.gene010954:intron 30.0%
! CCAAATTTTACCCATTAAGT+GGG + chr7.1:51430089-51430108 MS.gene010954:intron 30.0%
! GAAAGATTTGAAATGTACTC+AGG + chr7.1:51430703-51430722 MS.gene010954:CDS 30.0%
!! ATTTTGGGTGGAACAATTTT+TGG - chr7.1:51430015-51430034 None:intergenic 30.0%
!! CATCTTCTGCTTTTCAAATA+TGG + chr7.1:51429245-51429264 MS.gene010954:CDS 30.0%
!!! CTTTTTTTGTGTTAATCCTC+CGG + chr7.1:51429930-51429949 MS.gene010954:intron 30.0%
AAGGTAAGTATAGTGCTAGT+AGG - chr7.1:51430796-51430815 None:intergenic 35.0%
AGCAAGGAGATATTCATCTT+AGG + chr7.1:51430620-51430639 MS.gene010954:CDS 35.0%
ATCTTGAAAAAATGGGATGG+AGG - chr7.1:51428888-51428907 None:intergenic 35.0%
ATGAAAATTATGGCTTAGGG+TGG + chr7.1:51429707-51429726 MS.gene010954:intron 35.0%
ATGGACTTAACTCAGATTTG+TGG + chr7.1:51430191-51430210 MS.gene010954:intron 35.0%
CTATTGCTTCCAATTTCACA+TGG - chr7.1:51429458-51429477 None:intergenic 35.0%
CTTCATTGTTCGCATCTTTA+CGG + chr7.1:51430813-51430832 MS.gene010954:CDS 35.0%
GAAGACAACAACTTGAAAGT+TGG + chr7.1:51430745-51430764 MS.gene010954:CDS 35.0%
GAAGATGTGCACTTCAAAAT+GGG - chr7.1:51429279-51429298 None:intergenic 35.0%
GCAATAGCTGTGTTAAAGTT+AGG + chr7.1:51429471-51429490 MS.gene010954:intron 35.0%
GGTTATTAAATGGGAGAGTT+TGG + chr7.1:51430641-51430660 MS.gene010954:CDS 35.0%
TCTCCCAAATCTTCATCATT+CGG - chr7.1:51429383-51429402 None:intergenic 35.0%
TGCAAAGTGGAGATTAGATT+TGG + chr7.1:51429148-51429167 MS.gene010954:CDS 35.0%
TTACAAGCTTTCCTTGATGA+AGG - chr7.1:51428926-51428945 None:intergenic 35.0%
TTAGGTTTAGGCAAAAAGCA+AGG + chr7.1:51430604-51430623 MS.gene010954:CDS 35.0%
TTGAAATGTACTCAGGTGAA+TGG + chr7.1:51430710-51430729 MS.gene010954:CDS 35.0%
! CATTGTCGGAGTAAAAGTAT+AGG - chr7.1:51430503-51430522 None:intergenic 35.0%
! CCCACTTAATGGGTAAAATT+TGG - chr7.1:51430092-51430111 None:intergenic 35.0%
! GAATTTTGCAGGAAAGCAAT+TGG + chr7.1:51429735-51429754 MS.gene010954:intron 35.0%
! GTGGTATTTTGTAAGGAGTA+AGG + chr7.1:51430210-51430229 MS.gene010954:intron 35.0%
! TGTCTTTTACCAAACTCACT+TGG - chr7.1:51430580-51430599 None:intergenic 35.0%
!!! GAAGGGGTATTTTATCTCTA+AGG - chr7.1:51429312-51429331 None:intergenic 35.0%
ACCTCCGAATGATGAAGATT+TGG + chr7.1:51429376-51429395 MS.gene010954:CDS 40.0%
AGGTTTATTGCCAAGATCGT+TGG - chr7.1:51429360-51429379 None:intergenic 40.0%
ATCTGGTAAGCTCCAAACAA+AGG + chr7.1:51429863-51429882 MS.gene010954:intron 40.0%
CAAGCAGCATCAATGTATGA+TGG - chr7.1:51429841-51429860 None:intergenic 40.0%
CAGAACATACCAAGTGAGTT+TGG + chr7.1:51430568-51430587 MS.gene010954:intron 40.0%
CCAAAGAGTTGAAGCCAAAA+GGG + chr7.1:51429331-51429350 MS.gene010954:CDS 40.0%
CCTCCGAATGATGAAGATTT+GGG + chr7.1:51429377-51429396 MS.gene010954:CDS 40.0%
CGAAGATGTGCACTTCAAAA+TGG - chr7.1:51429280-51429299 None:intergenic 40.0%
CGTAAAGATGCGAACAATGA+AGG - chr7.1:51430815-51430834 None:intergenic 40.0%
GGCTAGGTTATACTTCTTCA+CGG - chr7.1:51429994-51430013 None:intergenic 40.0%
GGCTGAACTTCAGATTATCA+GGG - chr7.1:51429973-51429992 None:intergenic 40.0%
TCCAAAGAGTTGAAGCCAAA+AGG + chr7.1:51429330-51429349 MS.gene010954:CDS 40.0%
TGTGATCAAAGCCTTCATCA+AGG + chr7.1:51428912-51428931 MS.gene010954:CDS 40.0%
TTCCTAATTAGGTACCTTGC+AGG - chr7.1:51430667-51430686 None:intergenic 40.0%
! AAGATCGTTGGATACCCTTT+TGG - chr7.1:51429348-51429367 None:intergenic 40.0%
! CATAGAGTTTGCTCTGTCAA+AGG - chr7.1:51429782-51429801 None:intergenic 40.0%
! CATTGATGCTGCTTGTAATC+TGG + chr7.1:51429846-51429865 MS.gene010954:CDS 40.0%
! GCAAGGTACCTAATTAGGAA+AGG + chr7.1:51430667-51430686 MS.gene010954:CDS 40.0%
! TTGGCTTCAACTCTTTGGAA+GGG - chr7.1:51429329-51429348 None:intergenic 40.0%
! TTTGGCTTCAACTCTTTGGA+AGG - chr7.1:51429330-51429349 None:intergenic 40.0%
!! AAAAGGGTATCCAACGATCT+TGG + chr7.1:51429347-51429366 MS.gene010954:CDS 40.0%
!! TTTTCAAGGGCGAATCATTC+AGG - chr7.1:51430052-51430071 None:intergenic 40.0%
AATCTCCACTTTGCACCACT+TGG - chr7.1:51429143-51429162 None:intergenic 45.0%
CCCAAATCTTCATCATTCGG+AGG - chr7.1:51429380-51429399 None:intergenic 45.0%
CGCATGACAGCAATAAAGGA+TGG - chr7.1:51429817-51429836 None:intergenic 45.0%
CGGCTGAACTTCAGATTATC+AGG - chr7.1:51429974-51429993 None:intergenic 45.0%
GGTGATCCCAAGAAAGTTTG+TGG + chr7.1:51429073-51429092 MS.gene010954:intron 45.0%
GTTCCACCCAAAATCGAACT+CGG + chr7.1:51430021-51430040 MS.gene010954:intron 45.0%
TGGACGCATGACAGCAATAA+AGG - chr7.1:51429821-51429840 None:intergenic 45.0%
TTCCACCCAAAATCGAACTC+GGG + chr7.1:51430022-51430041 MS.gene010954:intron 45.0%
! GAGAACCCGAGTTCGATTTT+GGG - chr7.1:51430030-51430049 None:intergenic 45.0%
! TGGCTTCAACTCTTTGGAAG+GGG - chr7.1:51429328-51429347 None:intergenic 45.0%
!!! CCCTTTTGGCTTCAACTCTT+TGG - chr7.1:51429334-51429353 None:intergenic 45.0%
!!! GGGTGGAACAATTTTTGGCT+AGG - chr7.1:51430010-51430029 None:intergenic 45.0%
AGACTCCAAGTGGTGCAAAG+TGG + chr7.1:51429135-51429154 MS.gene010954:CDS 50.0%
GTGTTAATCCTCCGGTTCCT+GGG + chr7.1:51429938-51429957 MS.gene010954:intron 50.0%
TGTGTTAATCCTCCGGTTCC+TGG + chr7.1:51429937-51429956 MS.gene010954:intron 50.0%
! AACCCGAGTTCGATTTTGGG+TGG - chr7.1:51430027-51430046 None:intergenic 50.0%
! GGAGAACCCGAGTTCGATTT+TGG - chr7.1:51430031-51430050 None:intergenic 50.0%
! GGCCTGCAAGGTACCTAATT+AGG + chr7.1:51430662-51430681 MS.gene010954:CDS 50.0%
! GGGTGGTGCTTGAATTTTGC+AGG + chr7.1:51429724-51429743 MS.gene010954:intron 50.0%
ATGGGAGAGTTTGGCCTGCA+AGG + chr7.1:51430650-51430669 MS.gene010954:CDS 55.0%
ATCCTCCGGTTCCTGGGAGA+AGG + chr7.1:51429944-51429963 MS.gene010954:intron 60.0%
TCCTCCGGTTCCTGGGAGAA+GGG + chr7.1:51429945-51429964 MS.gene010954:intron 60.0%
CCTCCGGTTCCTGGGAGAAG+GGG + chr7.1:51429946-51429965 MS.gene010954:intron 65.0%
CTCCGGTTCCTGGGAGAAGG+GGG + chr7.1:51429947-51429966 MS.gene010954:intron 65.0%
TATCAGGGCCCCCTTCTCCC+AGG - chr7.1:51429958-51429977 None:intergenic 65.0%
CCCCTTCTCCCAGGAACCGG+AGG - chr7.1:51429949-51429968 None:intergenic 70.0%
GGCCCCCTTCTCCCAGGAAC+CGG - chr7.1:51429952-51429971 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 51428870 51430852 51428870 ID=MS.gene010954
chr7.1 mRNA 51428870 51430852 51428870 ID=MS.gene010954.t1;Parent=MS.gene010954
chr7.1 exon 51428870 51428941 51428870 ID=MS.gene010954.t1.exon1;Parent=MS.gene010954.t1
chr7.1 CDS 51428870 51428941 51428870 ID=cds.MS.gene010954.t1;Parent=MS.gene010954.t1
chr7.1 exon 51429074 51429413 51429074 ID=MS.gene010954.t1.exon2;Parent=MS.gene010954.t1
chr7.1 CDS 51429074 51429413 51429074 ID=cds.MS.gene010954.t1;Parent=MS.gene010954.t1
chr7.1 exon 51429746 51429867 51429746 ID=MS.gene010954.t1.exon3;Parent=MS.gene010954.t1
chr7.1 CDS 51429746 51429867 51429746 ID=cds.MS.gene010954.t1;Parent=MS.gene010954.t1
chr7.1 exon 51430571 51430852 51430571 ID=MS.gene010954.t1.exon4;Parent=MS.gene010954.t1
chr7.1 CDS 51430571 51430852 51430571 ID=cds.MS.gene010954.t1;Parent=MS.gene010954.t1
Gene Sequence

>MS.gene010954

ATGGCTAATGAATTTCCTCCATCCCATTTTTTCAAGATCATATGTGATCAAAGCCTTCATCAAGGAAAGCTTGTAAGCTTCCCACTCATTTACCTTTTTTTTCAAGCTTTTGTTGTCCATGTAATTTCTTTCTTAAGCTTTTGTTGCCATTTACAATTAAAATATTTGTTTCCGTTATATTAATATGGTTTAATTAATTGACAGGTGATCCCAAGAAAGTTTGTGGAGAAATATGGAAAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAGTGGTGCAAAGTGGAGATTAGATTTGGTAAAAAGTGATGGAAAAATATGGTTTCAAAAGGGTTGGAAAGAATTTGTGAAGTATCATTCTTTATCTCAAGGCCATCTTCTGCTTTTCAAATATGGAAGAACTTCCCATTTTGAAGTGCACATCTTCGATAAGAGTGCCTTAGAGATAAAATACCCCTTCCAAAGAGTTGAAGCCAAAAGGGTATCCAACGATCTTGGCAATAAACCTCCGAATGATGAAGATTTGGGAGATTATATAGCAAGTAAAAAGAGAAAAACTAACTTGTCATTAGAATTTAATCAACCATGTGAAATTGGAAGCAATAGCTGTGTTAAAGTTAGGAAATTGGAAAAGGTAGCTGAGTTGAATAATATTGACAAAAAGTGTAAAGGTATAAGAATTTGTGTTCTCAATGTCTCATAAATCATGCATACTTCACATGTTAGCCTGAGTTATTAGCTTTTCATTCTTAATTTACTTTCACTTTATGATTGGTTAAGTTTCATATTATGGCATGCAACTCGTTCATTATATTTCAATTTTTATAATAGATCAATGAAAATTATGGCTTAGGGTGGTGCTTGAATTTTGCAGGAAAGCAATTGGCTGTTGCTAAGAAAGTTACAACCTTTGACAGAGCAAACTCTATGAGAACTTGCAATCCATCCTTTATTGCTGTCATGCGTCCATCATACATTGATGCTGCTTGTAATCTGGTAAGCTCCAAACAAAGGTTTTGCTTAAAGGTCATAACTTTTTTTAATGGATGAAGGTCATTCTTTTTTTGTGTTAATCCTCCGGTTCCTGGGAGAAGGGGGCCCTGATAATCTGAAGTTCAGCCGTGAAGAAGTATAACCTAGCCAAAAATTGTTCCACCCAAAATCGAACTCGGGTTCTCCTGAATGATTCGCCCTTGAAAAACCACTATAACAAATTACCAAATTTTACCCATTAAGTGGGTCAATAGTATTTATTTGTAGTTAAATATGTTTGGTCCCTATAAATATCTCTGATCAAAATTTAGTCCAAACAATTTTATATGGACTTAACTCAGATTTGTGGTATTTTGTAAGGAGTAAGGACTACAAACATTTTTAATCCTTTTTATTTTGGGTCTATAAATAATGAAAAATGGAAACTATTTTTGTTTTGAAGAAAATTGGAAACTACTTATTGAAAACTTCAATGTTAATCTTTATTGATAATTTGGAAAGAGTTGAAATGTTGCTATATTGTCATCAGTGTAAAATGTTTTACACTGTCAACAAGGCAGTCAATCATAGATGTGACTTTTGAAGTAGTTATGATTAAAGTCAAATATTTTTACACTGACAATGTATTTGAAAAACCTATACTTTTACTCCGACAATGTATTTACTGATACTCAAGAACATTTGTTTTTTTTCTTTTGCTTGACAGAACATACCAAGTGAGTTTGGTAAAAGACACTTATTAGGTTTAGGCAAAAAGCAAGGAGATATTCATCTTAGGTTATTAAATGGGAGAGTTTGGCCTGCAAGGTACCTAATTAGGAAAGGCAATAGAAAAGGAGAAAGATTTGAAATGTACTCAGGTGAATGGAAGACATTTGCAGAAGACAACAACTTGAAAGTTGGTGATGTTTGCACTTTTGAGCTCTTTCCTACTAGCACTATACTTACCTTCATTGTTCGCATCTTTACGGATTCTTTTGAGACATAG
Protein sequence

>MS.gene010954.t1

MANEFPPSHFFKIICDQSLHQGKLVIPRKFVEKYGKGLSNAIYLKTPSGAKWRLDLVKSDGKIWFQKGWKEFVKYHSLSQGHLLLFKYGRTSHFEVHIFDKSALEIKYPFQRVEAKRVSNDLGNKPPNDEDLGDYIARKQLAVAKKVTTFDRANSMRTCNPSFIAVMRPSYIDAACNLNIPSEFGKRHLLGLGKKQGDIHLRLLNGRVWPARYLIRKGNRKGERFEMYSGEWKTFAEDNNLKVGDVCTFELFPTSTILTFIVRIFTDSFET