AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01099.t1 MTR_2g013370 92.058 277 18 2 1 276 1 274 1.92e-174 482
MS.gene01099.t1 MTR_4g089095 56.393 305 97 11 1 276 1 298 6.23e-86 259
MS.gene01099.t1 MTR_4g089095 56.589 258 80 9 44 276 14 264 1.50e-73 226
MS.gene01099.t1 MTR_3g091820 66.197 71 23 1 30 99 27 97 1.18e-28 111
MS.gene01099.t1 MTR_4g088580 63.415 82 29 1 48 128 57 138 1.29e-28 112
MS.gene01099.t1 MTR_2g096740 46.212 132 58 4 46 176 62 181 1.78e-28 110
MS.gene01099.t1 MTR_2g096740 46.212 132 58 4 46 176 77 196 1.85e-28 110
MS.gene01099.t1 MTR_8g479350 59.036 83 31 2 39 120 63 143 2.04e-28 111
MS.gene01099.t1 MTR_8g079060 58.750 80 27 3 44 121 27 102 6.41e-27 105
MS.gene01099.t1 MTR_7g024670 67.568 74 19 2 38 106 69 142 8.27e-27 107
MS.gene01099.t1 MTR_8g027295 58.108 74 30 1 28 100 6 79 1.20e-26 105
MS.gene01099.t1 MTR_2g093220 77.193 57 12 1 44 99 38 94 1.82e-26 105
MS.gene01099.t1 MTR_2g014170 83.673 49 8 0 45 93 44 92 2.32e-26 105
MS.gene01099.t1 MTR_4g063780 55.682 88 33 2 45 127 74 160 2.51e-26 105
MS.gene01099.t1 MTR_8g068210 60.870 69 26 1 40 107 26 94 2.62e-26 105
MS.gene01099.t1 MTR_8g015840 60.811 74 22 1 20 93 1 67 4.31e-26 102
MS.gene01099.t1 MTR_4g022370 53.846 91 34 2 45 127 81 171 4.51e-26 105
MS.gene01099.t1 MTR_1g077600 59.420 69 27 1 32 99 29 97 5.76e-26 103
MS.gene01099.t1 MTR_1g077600 59.420 69 27 1 32 99 29 97 5.91e-26 103
MS.gene01099.t1 MTR_4g461080 77.193 57 12 1 42 97 25 81 1.11e-25 102
MS.gene01099.t1 MTR_3g090430 74.138 58 14 1 45 101 50 107 1.66e-25 103
MS.gene01099.t1 MTR_7g059400 79.245 53 10 1 48 99 78 130 1.82e-25 103
MS.gene01099.t1 MTR_4g109980 80.000 50 10 0 44 93 38 87 4.13e-25 102
MS.gene01099.t1 MTR_1g056810 56.627 83 35 1 47 128 13 95 9.48e-25 100
MS.gene01099.t1 MTR_2g059540 79.592 49 10 0 45 93 30 78 9.60e-25 98.6
MS.gene01099.t1 MTR_3g435480 45.455 99 54 0 48 146 138 236 5.61e-24 100
MS.gene01099.t1 MTR_5g031440 75.000 48 12 0 46 93 43 90 3.43e-23 97.1
MS.gene01099.t1 MTR_3g077750 46.789 109 41 4 1 93 1 108 3.43e-23 97.1
MS.gene01099.t1 MTR_7g010950 74.074 54 13 1 46 98 135 188 1.00e-22 97.4
MS.gene01099.t1 MTR_6g027460 52.874 87 37 2 44 129 94 177 1.23e-22 96.3
MS.gene01099.t1 MTR_4g082060 66.102 59 19 1 46 103 122 180 1.41e-22 97.1
MS.gene01099.t1 MTR_2g014060 78.261 46 10 0 48 93 27 72 2.47e-22 94.7
MS.gene01099.t1 MTR_6g027450 67.857 56 17 1 46 100 89 144 2.52e-22 94.7
MS.gene01099.t1 MTR_2g016030 62.963 54 20 0 46 99 47 100 5.60e-22 90.1
MS.gene01099.t1 MTR_7g086780 67.857 56 17 1 46 100 99 154 5.88e-22 94.7
MS.gene01099.t1 MTR_6g012450 73.077 52 13 1 48 98 138 189 6.29e-22 95.1
MS.gene01099.t1 MTR_5g041420 58.209 67 27 1 33 98 125 191 1.72e-21 92.4
MS.gene01099.t1 MTR_8g044220 49.333 75 37 1 48 121 120 194 2.33e-21 93.2
MS.gene01099.t1 MTR_5g041530 58.209 67 27 1 33 98 127 193 7.28e-20 88.6
MS.gene01099.t1 MTR_5g041400 69.231 52 15 1 48 98 121 172 8.57e-20 88.2
MS.gene01099.t1 MTR_5g041380 63.793 58 20 1 48 104 129 186 1.03e-19 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01099.t1 AT1G28310 65.060 83 28 1 20 101 1 83 3.55e-29 112
MS.gene01099.t1 AT1G28310 65.060 83 28 1 20 101 25 107 6.90e-29 112
MS.gene01099.t1 AT5G66940 60.274 73 27 1 42 112 28 100 9.27e-28 107
MS.gene01099.t1 AT5G60850 59.770 87 31 2 34 116 36 122 1.82e-27 108
MS.gene01099.t1 AT1G51700 38.750 160 85 4 33 179 16 175 1.93e-27 105
MS.gene01099.t1 AT5G60200 57.447 94 32 3 19 111 32 118 2.87e-27 106
MS.gene01099.t1 AT3G55370 66.667 66 21 1 45 109 75 140 2.88e-27 108
MS.gene01099.t1 AT3G55370 66.667 66 21 1 45 109 75 140 2.89e-27 108
MS.gene01099.t1 AT3G55370 66.667 66 21 1 45 109 120 185 3.24e-27 108
MS.gene01099.t1 AT3G61850 75.439 57 13 1 44 99 60 116 1.92e-26 105
MS.gene01099.t1 AT3G61850 75.439 57 13 1 44 99 60 116 1.92e-26 105
MS.gene01099.t1 AT2G28510 77.193 57 12 1 44 99 46 102 2.16e-26 105
MS.gene01099.t1 AT3G61850 75.439 57 13 1 44 99 72 128 2.33e-26 105
MS.gene01099.t1 AT3G61850 75.439 57 13 1 44 99 60 116 2.86e-26 105
MS.gene01099.t1 AT3G45610 48.958 96 43 2 44 133 38 133 3.18e-26 103
MS.gene01099.t1 AT3G61850 75.439 57 13 1 44 99 72 128 3.68e-26 105
MS.gene01099.t1 AT3G50410 64.789 71 18 2 30 99 20 84 3.97e-26 103
MS.gene01099.t1 AT2G37590 61.429 70 24 2 35 101 76 145 8.98e-26 104
MS.gene01099.t1 AT4G24060 73.684 57 14 1 44 99 51 107 1.39e-25 103
MS.gene01099.t1 AT1G64620 57.692 78 31 1 16 93 21 96 3.06e-25 103
MS.gene01099.t1 AT2G28810 77.551 49 11 0 45 93 76 124 3.47e-25 102
MS.gene01099.t1 AT1G07640 70.690 58 15 1 46 101 21 78 3.62e-25 101
MS.gene01099.t1 AT3G21270 79.245 53 10 1 46 97 29 81 4.71e-25 99.4
MS.gene01099.t1 AT2G28810 77.551 49 11 0 45 93 93 141 5.27e-25 102
MS.gene01099.t1 AT4G38000 50.617 81 35 1 45 125 40 115 5.34e-25 100
MS.gene01099.t1 AT1G07640 70.690 58 15 1 46 101 77 134 5.61e-25 102
MS.gene01099.t1 AT4G21050 66.129 62 20 1 48 108 26 87 6.14e-25 99.4
MS.gene01099.t1 AT5G02460 73.214 56 14 1 45 99 94 149 6.45e-25 102
MS.gene01099.t1 AT1G07640 70.690 58 15 1 46 101 85 142 6.70e-25 102
MS.gene01099.t1 AT1G21340 55.128 78 31 2 25 101 20 94 1.78e-24 99.4
MS.gene01099.t1 AT5G65590 61.111 72 24 2 29 99 27 95 1.96e-24 100
MS.gene01099.t1 AT2G46590 74.000 50 13 0 44 93 66 115 3.97e-24 100
MS.gene01099.t1 AT2G46590 74.000 50 13 0 44 93 78 127 4.60e-24 100
MS.gene01099.t1 AT3G52440 68.966 58 17 1 48 104 27 84 1.16e-23 96.7
MS.gene01099.t1 AT3G52440 68.966 58 17 1 48 104 46 103 1.71e-23 96.7
MS.gene01099.t1 AT4G00940 67.241 58 18 1 44 100 66 123 6.16e-23 95.9
MS.gene01099.t1 AT4G00940 67.241 58 18 1 44 100 66 123 6.16e-23 95.9
MS.gene01099.t1 AT4G00940 67.241 58 18 1 44 100 66 123 6.16e-23 95.9
MS.gene01099.t1 AT3G47500 76.923 52 11 1 48 98 112 163 6.28e-23 97.8
MS.gene01099.t1 AT5G39660 53.947 76 35 0 48 123 140 215 9.06e-23 97.4
MS.gene01099.t1 AT5G39660 53.947 76 35 0 48 123 140 215 9.06e-23 97.4
MS.gene01099.t1 AT5G39660 53.947 76 35 0 48 123 140 215 9.06e-23 97.4
MS.gene01099.t1 AT5G62430 67.742 62 15 2 48 108 56 113 1.15e-22 95.1
MS.gene01099.t1 AT4G21040 64.286 56 20 0 48 103 27 82 1.36e-22 93.6
MS.gene01099.t1 AT1G47655 70.000 50 15 0 44 93 27 76 1.46e-22 92.8
MS.gene01099.t1 AT1G69570 72.222 54 14 1 46 98 132 185 1.83e-22 95.9
MS.gene01099.t1 AT5G62940 78.261 46 10 0 48 93 75 120 3.08e-22 95.1
MS.gene01099.t1 AT1G26790 73.077 52 13 1 48 98 113 164 4.86e-22 94.7
MS.gene01099.t1 AT4G21080 51.471 68 33 0 48 115 27 94 5.65e-22 92.4
MS.gene01099.t1 AT2G34140 68.519 54 16 1 46 98 58 111 6.14e-22 90.1
MS.gene01099.t1 AT1G29160 68.519 54 16 1 46 98 62 115 7.15e-22 90.1
MS.gene01099.t1 AT4G21030 49.275 69 34 1 48 115 23 91 4.90e-14 69.3

Find 62 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGAGGATATTGATTCTT+TGG 0.256542 2.4:-71156468 MS.gene01099:CDS
TTTCTCATGGGAGGAGTCTT+TGG 0.293343 2.4:+71157145 None:intergenic
GTTACCACCTGATTGATCTT+TGG 0.308181 2.4:+71156754 None:intergenic
GTTGTTGTAGTAACAAAATT+TGG 0.316594 2.4:+71157060 None:intergenic
GGTGGTAACAATGAAGAATT+TGG 0.329209 2.4:-71156740 MS.gene01099:CDS
GTCATTTGAGGTGGTGGTGG+AGG 0.372781 2.4:+71156868 None:intergenic
TGGTGAAGAGTTTAAAATAA+TGG 0.381474 2.4:-71156606 MS.gene01099:CDS
TCTTGCAAGCTCTGCAGAAA+TGG 0.390626 2.4:+71157017 None:intergenic
AACAATGAAGAATTTGGTAT+TGG 0.395188 2.4:-71156734 MS.gene01099:CDS
TTTGATCTTGCAACAAGGTT+TGG 0.402739 2.4:+71157179 None:intergenic
ATTCTGCCTGTTGTCATTTG+AGG 0.406425 2.4:+71156856 None:intergenic
TCCATGCCACTACTTGTTGC+AGG 0.407180 2.4:+71156509 None:intergenic
AGAATGGGAATATAAAGCTT+TGG 0.413450 2.4:+71156669 None:intergenic
AAAGAGCTTGAGTTTGAGAA+TGG 0.415643 2.4:+71156653 None:intergenic
TCATCCAATGGATATAACTA+TGG 0.419434 2.4:-71156626 MS.gene01099:CDS
CAACTGATCTAAATGTTCCT+TGG 0.420889 2.4:-71156442 MS.gene01099:CDS
TTTCTAGTAGAGGTGTTGAT+TGG 0.423681 2.4:-71157204 MS.gene01099:CDS
AACTGATCTAAATGTTCCTT+GGG 0.432000 2.4:-71156441 MS.gene01099:CDS
ATGTTCCTGTTGGTGGTGTT+AGG 0.438700 2.4:-71156964 MS.gene01099:CDS
CTCAGGAATGTTCCTGTTGG+TGG 0.438781 2.4:-71156971 MS.gene01099:CDS
GGACTAAAGGTGGTACTCTC+AGG 0.447007 2.4:-71156988 MS.gene01099:CDS
GAGGTGATGCTAATAGAAGT+TGG 0.447374 2.4:+71156911 None:intergenic
TTCTTCCTAACACCACCAAC+AGG 0.450348 2.4:+71156959 None:intergenic
TTCACCATAGTTATATCCAT+TGG 0.450485 2.4:+71156622 None:intergenic
GCATGGATATGTCAAACTAT+TGG 0.455144 2.4:-71156493 MS.gene01099:CDS
ATTTGAGGTGGTGGTGGAGG+AGG 0.457027 2.4:+71156871 None:intergenic
GTATTTGTAGAGTCACATCT+TGG 0.471158 2.4:+71157082 None:intergenic
GCAGAGCTTGCAAGAGACAT+TGG 0.471598 2.4:-71157009 MS.gene01099:CDS
GTTGTCATTTGAGGTGGTGG+TGG 0.475259 2.4:+71156865 None:intergenic
CCTGTTGTCATTTGAGGTGG+TGG 0.483435 2.4:+71156862 None:intergenic
TTGGTACTCATTAGATTCTG+TGG 0.490071 2.4:+71156773 None:intergenic
CCACCACCTCAAATGACAAC+AGG 0.496169 2.4:-71156862 MS.gene01099:CDS
ATGAGTACCAAAGATCAATC+AGG 0.500364 2.4:-71156761 MS.gene01099:CDS
TATGTCAAACTATTGGAGTT+GGG 0.508899 2.4:-71156486 MS.gene01099:CDS
TGCAAGAGACATTGGACTAA+AGG 0.515682 2.4:-71157001 MS.gene01099:CDS
AAGAGCTTGAGTTTGAGAAT+GGG 0.526214 2.4:+71156654 None:intergenic
ATATGTCAAACTATTGGAGT+TGG 0.531877 2.4:-71156487 MS.gene01099:CDS
ATGCCAAGCACTAGTGGTAG+TGG 0.534649 2.4:-71156557 MS.gene01099:CDS
GTGGCACTATTACACATCCA+TGG 0.536686 2.4:-71156538 MS.gene01099:CDS
CTGCCTGTTGTCATTTGAGG+TGG 0.547681 2.4:+71156859 None:intergenic
TCTAAGCAAGTTTCTAGTAG+AGG 0.557594 2.4:-71157214 MS.gene01099:CDS
AGAGATTCATGCATAGAAGA+AGG 0.563751 2.4:+71156821 None:intergenic
ACCTGCAACAAGTAGTGGCA+TGG 0.573077 2.4:-71156510 MS.gene01099:CDS
TTCTGTGGTGGCAACAAAGA+TGG 0.580745 2.4:+71156788 None:intergenic
GTGCCACTACCACTAGTGCT+TGG 0.582189 2.4:+71156554 None:intergenic
CTTGTTGCAGGTATCTCCCA+TGG 0.587087 2.4:+71156521 None:intergenic
GAGATACCTGCAACAAGTAG+TGG 0.600865 2.4:-71156515 MS.gene01099:CDS
ACTCTCAGGAATGTTCCTGT+TGG 0.606251 2.4:-71156974 MS.gene01099:CDS
TGAAGAGTTTAAAATAATGG+AGG 0.607082 2.4:-71156603 MS.gene01099:CDS
GTACTCATTAGATTCTGTGG+TGG 0.610936 2.4:+71156776 None:intergenic
AGTGCAATGCCAAGCACTAG+TGG 0.615832 2.4:-71156563 MS.gene01099:CDS
TTCATGCATAGAAGAAGGTG+TGG 0.623493 2.4:+71156826 None:intergenic
TGGCACTATTACACATCCAT+GGG 0.627148 2.4:-71156537 MS.gene01099:CDS
CAAGCTCTGCAGAAATGGCG+AGG 0.631289 2.4:+71157022 None:intergenic
AGCTCTTTAAGATCATCCAA+TGG 0.640870 2.4:-71156638 MS.gene01099:CDS
CTTGTTGCAAGATCAAAACA+TGG 0.647907 2.4:-71157173 MS.gene01099:CDS
AAGAGACATTGGACTAAAGG+TGG 0.661565 2.4:-71156998 MS.gene01099:CDS
GTCAAACTATTGGAGTTGGG+AGG 0.665707 2.4:-71156483 MS.gene01099:CDS
GCAACAAAATCAGCAACTAG+AGG 0.669254 2.4:-71157116 MS.gene01099:CDS
TTGATATCAGAATCATCCCA+AGG 0.669368 2.4:+71156425 None:intergenic
AGTACCAAAGATCAATCAGG+TGG 0.670824 2.4:-71156758 MS.gene01099:CDS
TGTGGTGGCAACAAAGATGG+TGG 0.671597 2.4:+71156791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AACAATGAAGAATTTGGTAT+TGG - chr2.4:71156910-71156929 MS.gene01099:CDS 25.0%
! GTTGTTGTAGTAACAAAATT+TGG + chr2.4:71156587-71156606 None:intergenic 25.0%
!! TGAAGAGTTTAAAATAATGG+AGG - chr2.4:71157041-71157060 MS.gene01099:CDS 25.0%
!! TGGTGAAGAGTTTAAAATAA+TGG - chr2.4:71157038-71157057 MS.gene01099:CDS 25.0%
!!! AATATAAAGCTTTGGTTTTG+AGG + chr2.4:71156970-71156989 None:intergenic 25.0%
AACTGATCTAAATGTTCCTT+GGG - chr2.4:71157203-71157222 MS.gene01099:CDS 30.0%
AGAATGGGAATATAAAGCTT+TGG + chr2.4:71156978-71156997 None:intergenic 30.0%
ATATGTCAAACTATTGGAGT+TGG - chr2.4:71157157-71157176 MS.gene01099:CDS 30.0%
TATGTCAAACTATTGGAGTT+GGG - chr2.4:71157158-71157177 MS.gene01099:CDS 30.0%
TCATCCAATGGATATAACTA+TGG - chr2.4:71157018-71157037 MS.gene01099:CDS 30.0%
TTCACCATAGTTATATCCAT+TGG + chr2.4:71157025-71157044 None:intergenic 30.0%
AAAGAGCTTGAGTTTGAGAA+TGG + chr2.4:71156994-71157013 None:intergenic 35.0%
AAGAGCTTGAGTTTGAGAAT+GGG + chr2.4:71156993-71157012 None:intergenic 35.0%
AGAGATTCATGCATAGAAGA+AGG + chr2.4:71156826-71156845 None:intergenic 35.0%
ATGAGTACCAAAGATCAATC+AGG - chr2.4:71156883-71156902 MS.gene01099:CDS 35.0%
CAACTGATCTAAATGTTCCT+TGG - chr2.4:71157202-71157221 MS.gene01099:CDS 35.0%
CTTGTTGCAAGATCAAAACA+TGG - chr2.4:71156471-71156490 MS.gene01099:CDS 35.0%
GCATGGATATGTCAAACTAT+TGG - chr2.4:71157151-71157170 MS.gene01099:CDS 35.0%
GGTGGTAACAATGAAGAATT+TGG - chr2.4:71156904-71156923 MS.gene01099:CDS 35.0%
GTATTTGTAGAGTCACATCT+TGG + chr2.4:71156565-71156584 None:intergenic 35.0%
TTGATATCAGAATCATCCCA+AGG + chr2.4:71157222-71157241 None:intergenic 35.0%
TTGGTACTCATTAGATTCTG+TGG + chr2.4:71156874-71156893 None:intergenic 35.0%
TTTGATCTTGCAACAAGGTT+TGG + chr2.4:71156468-71156487 None:intergenic 35.0%
! GGTGCTAATAGTAGTTTTTG+AGG + chr2.4:71156755-71156774 None:intergenic 35.0%
!! AGCTCTTTAAGATCATCCAA+TGG - chr2.4:71157006-71157025 MS.gene01099:CDS 35.0%
!! TCTAAGCAAGTTTCTAGTAG+AGG - chr2.4:71156430-71156449 MS.gene01099:CDS 35.0%
!! TTGGGAGGATATTGATTCTT+TGG - chr2.4:71157176-71157195 MS.gene01099:CDS 35.0%
!! TTTCTAGTAGAGGTGTTGAT+TGG - chr2.4:71156440-71156459 MS.gene01099:CDS 35.0%
!!! AAGCTTTGGTTTTGAGGAAA+AGG + chr2.4:71156964-71156983 None:intergenic 35.0%
!!! CATGTTTTGATCTTGCAACA+AGG + chr2.4:71156473-71156492 None:intergenic 35.0%
!!! TGTTGCTGTTGTTTTCTCAT+GGG + chr2.4:71156514-71156533 None:intergenic 35.0%
!!! TTGTTGCTGTTGTTTTCTCA+TGG + chr2.4:71156515-71156534 None:intergenic 35.0%
AAGAGACATTGGACTAAAGG+TGG - chr2.4:71156646-71156665 MS.gene01099:CDS 40.0%
AGTACCAAAGATCAATCAGG+TGG - chr2.4:71156886-71156905 MS.gene01099:CDS 40.0%
GAGGTGATGCTAATAGAAGT+TGG + chr2.4:71156736-71156755 None:intergenic 40.0%
GCAACAAAATCAGCAACTAG+AGG - chr2.4:71156528-71156547 MS.gene01099:CDS 40.0%
GTACTCATTAGATTCTGTGG+TGG + chr2.4:71156871-71156890 None:intergenic 40.0%
GTTACCACCTGATTGATCTT+TGG + chr2.4:71156893-71156912 None:intergenic 40.0%
TGCAAGAGACATTGGACTAA+AGG - chr2.4:71156643-71156662 MS.gene01099:CDS 40.0%
TGGCACTATTACACATCCAT+GGG - chr2.4:71157107-71157126 MS.gene01099:CDS 40.0%
TTCATGCATAGAAGAAGGTG+TGG + chr2.4:71156821-71156840 None:intergenic 40.0%
! ATTCTGCCTGTTGTCATTTG+AGG + chr2.4:71156791-71156810 None:intergenic 40.0%
ACTCTCAGGAATGTTCCTGT+TGG - chr2.4:71156670-71156689 MS.gene01099:CDS 45.0%
GAGATACCTGCAACAAGTAG+TGG - chr2.4:71157129-71157148 MS.gene01099:CDS 45.0%
GTCAAACTATTGGAGTTGGG+AGG - chr2.4:71157161-71157180 MS.gene01099:CDS 45.0%
GTGGCACTATTACACATCCA+TGG - chr2.4:71157106-71157125 MS.gene01099:CDS 45.0%
TCTTGCAAGCTCTGCAGAAA+TGG + chr2.4:71156630-71156649 None:intergenic 45.0%
TTCTGTGGTGGCAACAAAGA+TGG + chr2.4:71156859-71156878 None:intergenic 45.0%
TTCTTCCTAACACCACCAAC+AGG + chr2.4:71156688-71156707 None:intergenic 45.0%
TTTCTCATGGGAGGAGTCTT+TGG + chr2.4:71156502-71156521 None:intergenic 45.0%
!! ATGTTCCTGTTGGTGGTGTT+AGG - chr2.4:71156680-71156699 MS.gene01099:CDS 45.0%
!!! TGCTGTTGTTTTCTCATGGG+AGG + chr2.4:71156511-71156530 None:intergenic 45.0%
ACCTGCAACAAGTAGTGGCA+TGG - chr2.4:71157134-71157153 MS.gene01099:CDS 50.0%
AGTGCAATGCCAAGCACTAG+TGG - chr2.4:71157081-71157100 MS.gene01099:CDS 50.0%
ATGCCAAGCACTAGTGGTAG+TGG - chr2.4:71157087-71157106 MS.gene01099:CDS 50.0%
CCACCACCTCAAATGACAAC+AGG - chr2.4:71156782-71156801 MS.gene01099:CDS 50.0%
CTCAGGAATGTTCCTGTTGG+TGG - chr2.4:71156673-71156692 MS.gene01099:CDS 50.0%
CTTGTTGCAGGTATCTCCCA+TGG + chr2.4:71157126-71157145 None:intergenic 50.0%
GCAGAGCTTGCAAGAGACAT+TGG - chr2.4:71156635-71156654 MS.gene01099:CDS 50.0%
GGACTAAAGGTGGTACTCTC+AGG - chr2.4:71156656-71156675 MS.gene01099:CDS 50.0%
TGTGGTGGCAACAAAGATGG+TGG + chr2.4:71156856-71156875 None:intergenic 50.0%
! CCTGTTGTCATTTGAGGTGG+TGG + chr2.4:71156785-71156804 None:intergenic 50.0%
! CTGCCTGTTGTCATTTGAGG+TGG + chr2.4:71156788-71156807 None:intergenic 50.0%
! GTTGTCATTTGAGGTGGTGG+TGG + chr2.4:71156782-71156801 None:intergenic 50.0%
! TCCATGCCACTACTTGTTGC+AGG + chr2.4:71157138-71157157 None:intergenic 50.0%
CAAGCTCTGCAGAAATGGCG+AGG + chr2.4:71156625-71156644 None:intergenic 55.0%
! GTGCCACTACCACTAGTGCT+TGG + chr2.4:71157093-71157112 None:intergenic 55.0%
!! ATTTGAGGTGGTGGTGGAGG+AGG + chr2.4:71156776-71156795 None:intergenic 55.0%
!! GTCATTTGAGGTGGTGGTGG+AGG + chr2.4:71156779-71156798 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 71156418 71157248 71156418 ID=MS.gene01099
chr2.4 mRNA 71156418 71157248 71156418 ID=MS.gene01099.t1;Parent=MS.gene01099
chr2.4 exon 71156418 71157248 71156418 ID=MS.gene01099.t1.exon1;Parent=MS.gene01099.t1
chr2.4 CDS 71156418 71157248 71156418 ID=cds.MS.gene01099.t1;Parent=MS.gene01099.t1
Gene Sequence

>MS.gene01099

ATGGGCTTGAGTTCTAAGCAAGTTTCTAGTAGAGGTGTTGATTGGAACCAAACCTTGTTGCAAGATCAAAACATGGAACTTCCAAAGACTCCTCCCATGAGAAAACAACAGCAACAAAATCAGCAACTAGAGGCAGTGAATTGTCCAAGATGTGACTCTACAAATACCAAATTTTGTTACTACAACAACTATAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGACATTGGACTAAAGGTGGTACTCTCAGGAATGTTCCTGTTGGTGGTGTTAGGAAGAATAAGAGAGTCAAGATATCAACTTCTCCAACTTCTATTAGCATCACCTCAAAAACTACTATTAGCACCTCCTCCACCACCACCTCAAATGACAACAGGCAGAATAAAAAAACCACACCTTCTTCTATGCATGAATCTCTTATTCATCCACCATCTTTGTTGCCACCACAGAATCTAATGAGTACCAAAGATCAATCAGGTGGTAACAATGAAGAATTTGGTATTGGTAATGACATGTTTCTGAGTTCATCTATGCCTTTTCCTCAAAACCAAAGCTTTATATTCCCATTCTCAAACTCAAGCTCTTTAAGATCATCCAATGGATATAACTATGGTGAAGAGTTTAAAATAATGGAGGAGTCAACTATTAACAACAGTGCAATGCCAAGCACTAGTGGTAGTGGCACTATTACACATCCATGGGAGATACCTGCAACAAGTAGTGGCATGGATATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA
Protein sequence

>MS.gene01099.t1

MGLSSKQVSSRGVDWNQTLLQDQNMELPKTPPMRKQQQQNQQLEAVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKISTSPTSISITSKTTISTSSTTTSNDNRQNKKTTPSSMHESLIHPPSLLPPQNLMSTKDQSGGNNEEFGIGNDMFLSSSMPFPQNQSFIFPFSNSSSLRSSNGYNYGEEFKIMEESTINNSAMPSTSGSGTITHPWEIPATSSGMDMSNYWSWEDIDSLVSTDLNVPWDDSDIKP