AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011207

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011207.t1 MTR_8g017210 91.221 524 31 5 1 516 1 517 0.0 863
MS.gene011207.t1 MTR_2g099990 57.795 526 136 22 18 516 1 467 4.06e-180 514
MS.gene011207.t1 MTR_2g099990 57.174 453 119 18 84 516 1 398 2.47e-154 446
MS.gene011207.t1 MTR_1g016010 47.784 519 190 15 1 510 1 447 1.82e-133 395
MS.gene011207.t1 MTR_4g059870 45.049 515 212 15 29 506 8 488 1.65e-118 358
MS.gene011207.t1 MTR_1g094115 88.415 164 19 0 58 221 45 208 8.48e-111 340
MS.gene011207.t1 MTR_1g112270 87.500 160 20 0 63 222 47 206 2.30e-107 332
MS.gene011207.t1 MTR_2g093960 68.981 216 56 4 59 265 31 244 2.80e-104 318
MS.gene011207.t1 MTR_1g112270 82.738 168 29 0 55 222 50 217 1.09e-103 323
MS.gene011207.t1 MTR_2g090745 49.716 352 137 7 70 385 17 364 2.43e-102 314
MS.gene011207.t1 MTR_1g094115 79.878 164 16 1 58 221 45 191 7.57e-95 298
MS.gene011207.t1 MTR_2g017720 76.667 120 23 1 65 184 318 432 4.86e-57 196
MS.gene011207.t1 MTR_3g102000 71.717 99 21 2 87 181 36 131 5.66e-41 147
MS.gene011207.t1 MTR_5g030560 72.000 50 14 0 65 114 11 60 2.00e-20 85.9
MS.gene011207.t1 MTR_1g093095 33.333 156 89 6 83 225 109 262 1.67e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011207.t1 AT3G13810 47.312 558 177 16 15 516 17 513 1.69e-142 420
MS.gene011207.t1 AT3G13810 47.312 558 177 16 15 516 17 513 1.69e-142 420
MS.gene011207.t1 AT3G13810 47.312 558 177 16 15 516 12 508 3.11e-142 419
MS.gene011207.t1 AT3G13810 47.207 555 176 16 18 516 1 494 1.22e-140 414
MS.gene011207.t1 AT1G55110 49.390 492 177 15 14 501 17 440 6.92e-133 393
MS.gene011207.t1 AT1G55110 49.390 492 177 15 14 501 17 440 6.92e-133 393
MS.gene011207.t1 AT1G55110 49.390 492 177 15 14 501 17 440 6.92e-133 393
MS.gene011207.t1 AT3G13810 45.035 564 187 16 15 516 12 514 1.89e-128 384
MS.gene011207.t1 AT3G13810 44.920 561 186 16 18 516 1 500 7.67e-127 379
MS.gene011207.t1 AT5G44160 48.317 416 177 8 29 410 8 419 4.50e-113 343
MS.gene011207.t1 AT1G03840 78.173 197 38 2 52 248 35 226 4.10e-112 342
MS.gene011207.t1 AT5G66730 75.362 207 34 2 17 222 4 194 6.00e-112 341
MS.gene011207.t1 AT3G50700 72.857 210 38 2 17 223 4 197 1.13e-111 339
MS.gene011207.t1 AT4G02670 51.715 379 109 12 27 399 19 329 3.29e-109 331
MS.gene011207.t1 AT4G02670 51.715 379 109 12 27 399 17 327 3.36e-109 331
MS.gene011207.t1 AT1G14580 72.277 202 52 1 21 222 18 215 5.71e-109 332
MS.gene011207.t1 AT1G14580 72.277 202 52 1 21 222 18 215 5.71e-109 332
MS.gene011207.t1 AT2G02080 51.397 358 110 9 58 362 52 398 7.26e-109 334
MS.gene011207.t1 AT2G02080 51.397 358 110 9 58 362 52 398 7.26e-109 334
MS.gene011207.t1 AT2G02080 51.397 358 110 9 58 362 52 398 7.26e-109 334
MS.gene011207.t1 AT2G02080 51.397 358 110 9 58 362 52 398 7.26e-109 334
MS.gene011207.t1 AT3G45260 81.768 181 24 2 60 231 39 219 8.61e-109 331
MS.gene011207.t1 AT3G45260 81.768 181 24 2 60 231 39 219 8.61e-109 331
MS.gene011207.t1 AT1G14580 72.277 202 52 1 21 222 32 229 1.23e-108 332
MS.gene011207.t1 AT1G03840 77.157 197 38 3 52 248 35 224 3.21e-108 332
MS.gene011207.t1 AT2G02070 79.888 179 34 1 60 238 52 228 9.91e-106 328
MS.gene011207.t1 AT2G02070 79.888 179 34 1 60 238 52 228 9.91e-106 328
MS.gene011207.t1 AT5G03150 74.129 201 40 3 60 257 53 244 5.55e-105 323
MS.gene011207.t1 AT5G44160 48.800 375 156 7 70 410 8 380 4.45e-104 318
MS.gene011207.t1 AT5G60470 74.332 187 44 2 40 225 27 210 1.94e-102 315
MS.gene011207.t1 AT5G60470 74.332 187 44 2 40 225 23 206 2.00e-102 315
MS.gene011207.t1 AT5G60470 73.988 173 43 2 52 222 26 198 3.97e-94 294
MS.gene011207.t1 AT2G02080 49.699 332 103 9 84 362 1 321 1.56e-93 292
MS.gene011207.t1 AT2G02080 49.699 332 103 9 84 362 1 321 1.56e-93 292
MS.gene011207.t1 AT1G25250 65.605 157 51 2 60 213 33 189 4.91e-74 239
MS.gene011207.t1 AT1G68130 65.385 156 52 2 60 213 41 196 1.82e-73 239
MS.gene011207.t1 AT2G01940 64.198 162 56 2 56 215 40 201 3.41e-73 239
MS.gene011207.t1 AT1G25250 62.577 163 56 3 56 213 4 166 4.64e-71 231
MS.gene011207.t1 AT2G01940 63.190 163 57 3 56 215 40 202 1.15e-69 230
MS.gene011207.t1 AT1G68130 66.364 110 35 2 106 213 1 110 4.09e-47 167
MS.gene011207.t1 AT1G25250 65.766 111 35 2 106 213 1 111 9.16e-47 165
MS.gene011207.t1 AT2G01940 64.286 112 38 2 106 215 1 112 8.80e-46 164
MS.gene011207.t1 AT1G34370 33.544 158 91 3 69 212 14 171 8.31e-24 101
MS.gene011207.t1 AT1G34370 33.544 158 91 3 69 212 224 381 1.21e-23 104
MS.gene011207.t1 AT1G34370 33.544 158 91 3 69 212 224 381 1.21e-23 104
MS.gene011207.t1 AT5G22890 33.735 166 94 5 61 212 191 354 1.76e-23 102
MS.gene011207.t1 AT1G13290 34.437 151 85 6 83 221 95 243 1.87e-19 89.4
MS.gene011207.t1 AT1G08290 33.908 174 93 8 59 212 141 312 1.56e-18 87.4
MS.gene011207.t1 AT1G51220 33.094 139 83 4 83 212 172 309 3.99e-18 86.3
MS.gene011207.t1 AT3G20880 31.447 159 93 5 83 226 250 407 4.61e-18 87.0
MS.gene011207.t1 AT3G57670 33.571 140 81 5 83 212 211 348 7.28e-18 85.9
MS.gene011207.t1 AT1G34790 33.557 149 89 4 73 212 129 276 7.64e-17 81.6

Find 98 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCTCACCATGCTTTC+TGG 0.052883 8.2:-76485096 None:intergenic
CACCGAACATTTCATCAAAT+TGG 0.129205 8.2:-76486591 None:intergenic
TTCTCTAGTGCCACATGTTT+TGG 0.232714 8.2:-76485177 None:intergenic
TGTAATCATAAGATGGTAAA+AGG 0.239938 8.2:+76484523 None:intergenic
TCTGGTAACAGAACTGAAAT+TGG 0.252456 8.2:+76484628 MS.gene011207:CDS
GACGGTGGCGGCGGCGGCGG+CGG 0.256319 8.2:+76486682 MS.gene011207:CDS
CCTAGTCTTGTTCATGTTCC+TGG 0.271217 8.2:+76486253 MS.gene011207:CDS
CTTGTTGAGGATTATTGAAT+TGG 0.287471 8.2:-76486054 None:intergenic
GCCGCCGCCGCCACCGTCAT+TGG 0.303592 8.2:-76486677 None:intergenic
CATGATCCATCAAGAGCATT+AGG 0.324615 8.2:+76485044 MS.gene011207:CDS
TGTTGTTGTGAGGGTAAAAT+TGG 0.350354 8.2:-76485986 None:intergenic
AGGTTTGACAAGAGATTTCT+TGG 0.358914 8.2:+76486717 MS.gene011207:CDS
AATGACGGTGGCGGCGGCGG+CGG 0.359203 8.2:+76486679 MS.gene011207:CDS
CAAGAGATTTCTTGGGGCTT+AGG 0.363505 8.2:+76486725 MS.gene011207:CDS
ATGATCCATCAAGAGCATTA+GGG 0.372273 8.2:+76485045 MS.gene011207:CDS
ACCGAACATTTCATCAAATT+GGG 0.391227 8.2:-76486590 None:intergenic
AATAATGTCTCTGGTAACTT+TGG 0.395509 8.2:+76486430 MS.gene011207:CDS
CTTCCACTACTTGTTGCTGT+TGG 0.402652 8.2:-76484558 None:intergenic
GGTGAAGCTAGTGTTTCTTC+TGG 0.407702 8.2:+76484610 MS.gene011207:CDS
AAATCCCCTAATGCTCTTGA+TGG 0.408372 8.2:-76485050 None:intergenic
GTTGCAGAAAGCAGCTCAAA+TGG 0.410516 8.2:+76486333 MS.gene011207:CDS
TCTGAAATTCCACCTTGGCT+TGG 0.415974 8.2:+76486133 MS.gene011207:CDS
TGATGCACACAAGTTGGTTC+TGG 0.417382 8.2:-76485023 None:intergenic
AGTGACATTCTAAGTATTGC+AGG 0.426084 8.2:+76486760 MS.gene011207:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 8.2:+76485144 MS.gene011207:CDS
ACCAATGACGGTGGCGGCGG+CGG 0.436786 8.2:+76486676 MS.gene011207:CDS
ATTCTAAGTATTGCAGGGAT+TGG 0.439295 8.2:+76486766 MS.gene011207:CDS
ACATGAACAAGACTAGGGTT+AGG 0.441835 8.2:-76486247 None:intergenic
ATTTGTGAGATCTGCAACAA+AGG 0.447156 8.2:+76484894 MS.gene011207:CDS
GTTCTTTGCTTCAACTTCCA+TGG 0.449598 8.2:-76484966 None:intergenic
GAAAACAAACCTGGGTTACC+AGG 0.450492 8.2:-76484730 None:intergenic
ATAGCTATAACCTCAGCATC+CGG 0.451144 8.2:-76484837 None:intergenic
TCAAACTTAACTTCTGCATC+TGG 0.461869 8.2:+76484589 MS.gene011207:CDS
GATTCTCTCAATAATGTCTC+TGG 0.462323 8.2:+76486421 MS.gene011207:CDS
GAAGTAGTTGCAGTAGTTGT+TGG 0.470353 8.2:-76486502 None:intergenic
AAAGCCATCATGGCAAGGTT+AGG 0.473421 8.2:+76486828 MS.gene011207:CDS
TGGGTCTTAATATTCATAGT+TGG 0.475879 8.2:-76486391 None:intergenic
GGTGCAACAATGAATAGAAC+TGG 0.479773 8.2:+76486355 MS.gene011207:CDS
TCAAGTTCAACAACAATACT+TGG 0.481347 8.2:+76484669 MS.gene011207:CDS
CCAGGAACATGAACAAGACT+AGG 0.482912 8.2:-76486253 None:intergenic
GAAGGTACTGTTTGGTAAGA+AGG 0.483393 8.2:-76486286 None:intergenic
ATCAATCTCAAAAGCCATCA+TGG 0.486220 8.2:+76486818 MS.gene011207:CDS
ACCCAATTTGATGAAATGTT+CGG 0.495328 8.2:+76486589 MS.gene011207:CDS
CATGAACAAGACTAGGGTTA+GGG 0.500721 8.2:-76486246 None:intergenic
GGTTTGACAAGAGATTTCTT+GGG 0.503476 8.2:+76486718 MS.gene011207:CDS
ACCACCAATGACGGTGGCGG+CGG 0.504903 8.2:+76486673 MS.gene011207:CDS
TGGACCTAACCTTGCCATGA+TGG 0.507628 8.2:-76486832 None:intergenic
AGTATTGTTGTTGAACTTGA+GGG 0.512238 8.2:-76484666 None:intergenic
CATTATTGAGAGAATCAACT+TGG 0.518652 8.2:-76486414 None:intergenic
GGCGGCGGTGGTGGAAATGA+AGG 0.520549 8.2:+76486697 MS.gene011207:CDS
ATTTAGTTACCTTGAGAAGA+GGG 0.520888 8.2:-76485219 None:intergenic
GAGAGATGATCAACATTATG+TGG 0.524492 8.2:-76486157 None:intergenic
GAAAGCATGGTGAGAAGAAG+TGG 0.533075 8.2:+76485099 MS.gene011207:CDS
GCCGCCGCCACCGTCATTGG+TGG 0.534618 8.2:-76486674 None:intergenic
AAGTATTGTTGTTGAACTTG+AGG 0.537745 8.2:-76484667 None:intergenic
TTGCAGAAAGCAGCTCAAAT+GGG 0.549522 8.2:+76486334 MS.gene011207:CDS
TAAGAAGGGAGTGTGGGTCC+AGG 0.557369 8.2:-76486271 None:intergenic
AAATTATGAAAATCTTGTTG+AGG 0.561862 8.2:-76486067 None:intergenic
AGAGCATTAGGGGATTTGAC+TGG 0.562614 8.2:+76485056 MS.gene011207:CDS
ACATTATGTGGGCCAAGCCA+AGG 0.564626 8.2:-76486145 None:intergenic
ATTGAGAGAATCAACTTGGT+GGG 0.565155 8.2:-76486410 None:intergenic
AAGGTACTGTTTGGTAAGAA+GGG 0.566686 8.2:-76486285 None:intergenic
ACCTTTCTGAAATTCCACCT+TGG 0.568922 8.2:+76486128 MS.gene011207:CDS
GCCAAGGTGGAATTTCAGAA+AGG 0.572630 8.2:-76486129 None:intergenic
TAGCTATAACCTCAGCATCC+GGG 0.572921 8.2:-76484836 None:intergenic
GTTCCAACAGCAACAAGTAG+TGG 0.573848 8.2:+76484555 MS.gene011207:CDS
GATGAAGGTTGTTGTTGTGA+GGG 0.574323 8.2:-76485995 None:intergenic
AATCTTCAACTTCACAGAAG+AGG 0.577210 8.2:+76484933 MS.gene011207:CDS
AATTTAGTTACCTTGAGAAG+AGG 0.584975 8.2:-76485220 None:intergenic
TATTGAGAGAATCAACTTGG+TGG 0.585481 8.2:-76486411 None:intergenic
ACAACCACCAATGACGGTGG+CGG 0.585647 8.2:+76486670 MS.gene011207:CDS
TTCAGCTCACATGTCAGCTA+CGG 0.586786 8.2:+76486306 MS.gene011207:CDS
TGTGAGCTGAAGGTACTGTT+TGG 0.586948 8.2:-76486294 None:intergenic
AGAAACCTCCCTGGTAACCC+AGG 0.588025 8.2:+76484721 MS.gene011207:CDS
TCTAAAACAACCACCAATGA+CGG 0.588296 8.2:+76486664 MS.gene011207:CDS
GTGACATTCTAAGTATTGCA+GGG 0.598839 8.2:+76486761 MS.gene011207:CDS
TGATGAAGGTTGTTGTTGTG+AGG 0.603801 8.2:-76485996 None:intergenic
GTTTGACAAGAGATTTCTTG+GGG 0.605661 8.2:+76486719 MS.gene011207:CDS
TGATGAGAAGATGATGATGA+AGG 0.612181 8.2:-76486010 None:intergenic
CAATTTGATGAAATGTTCGG+TGG 0.614471 8.2:+76486592 MS.gene011207:CDS
TGATCCATCAAGAGCATTAG+GGG 0.622634 8.2:+76485046 MS.gene011207:CDS
TCTCAAAAGCCATCATGGCA+AGG 0.624497 8.2:+76486823 MS.gene011207:CDS
TGGGTTGCTTCAAATCCAGA+AGG 0.625506 8.2:-76486571 None:intergenic
GTTTGGTAAGAAGGGAGTGT+GGG 0.626393 8.2:-76486277 None:intergenic
TGTTTGGTAAGAAGGGAGTG+TGG 0.632667 8.2:-76486278 None:intergenic
CAGGAACATGAACAAGACTA+GGG 0.634110 8.2:-76486252 None:intergenic
ACTGTGGAACCCTCTTCTCA+AGG 0.634375 8.2:+76485210 MS.gene011207:CDS
AGAATGTCACTATGTGACAA+TGG 0.635720 8.2:-76486748 None:intergenic
GAAGAGGTCATAATTTACCA+TGG 0.635939 8.2:+76484949 MS.gene011207:CDS
AGAGATGATCAACATTATGT+GGG 0.641603 8.2:-76486156 None:intergenic
GGATCATGATGCACACAAGT+TGG 0.642093 8.2:-76485029 None:intergenic
AAAACAAACCTGGGTTACCA+GGG 0.660704 8.2:-76484729 None:intergenic
ACAAACCTGGGTTACCAGGG+AGG 0.662065 8.2:-76484726 None:intergenic
AAAACAACCACCAATGACGG+TGG 0.670222 8.2:+76486667 MS.gene011207:CDS
AAAGCTCATTCCAAAACATG+TGG 0.678165 8.2:+76485167 MS.gene011207:CDS
GTAGCTGACATGTGAGCTGA+AGG 0.684738 8.2:-76486304 None:intergenic
TTATGTGGGCCAAGCCAAGG+TGG 0.692215 8.2:-76486142 None:intergenic
AGAGAATATAGATGTGACTG+TGG 0.703138 8.2:+76485194 MS.gene011207:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCACATTATTAATATTA+AGG + chr8.2:76485357-76485376 MS.gene011207:intron 10.0%
!! GTAAAACTATATAATATTAA+GGG - chr8.2:76485552-76485571 None:intergenic 10.0%
!! TGTAAAACTATATAATATTA+AGG - chr8.2:76485553-76485572 None:intergenic 10.0%
!! TTAATTTCATTCATTTATGA+AGG + chr8.2:76485288-76485307 MS.gene011207:intron 15.0%
!! TTGATAAACATGTTATTAAT+GGG + chr8.2:76484778-76484797 MS.gene011207:intron 15.0%
!! TTTGATAAACATGTTATTAA+TGG + chr8.2:76484777-76484796 MS.gene011207:intron 15.0%
!!! AGTTTAAAATGTTTTCTTTT+TGG - chr8.2:76485442-76485461 None:intergenic 15.0%
!! AAATTATGAAAATCTTGTTG+AGG - chr8.2:76486070-76486089 None:intergenic 20.0%
!! AACAAAACAAAACAAAAAGA+AGG - chr8.2:76484758-76484777 None:intergenic 20.0%
!! AAGACAAATAGTCTATTATT+AGG - chr8.2:76485716-76485735 None:intergenic 20.0%
!! CATTAAAAAATTTCCTTACT+AGG - chr8.2:76485688-76485707 None:intergenic 20.0%
!!! TTAATGGGTTTTTTTTTGTT+TGG + chr8.2:76484793-76484812 MS.gene011207:intron 20.0%
! AAGAATGGAATTAGTGATTA+TGG - chr8.2:76485648-76485667 None:intergenic 25.0%
! ACTATATTTGACTCCTTAAT+CGG + chr8.2:76485501-76485520 MS.gene011207:intron 25.0%
! AGAATGGAATTAGTGATTAT+GGG - chr8.2:76485647-76485666 None:intergenic 25.0%
! ATTTCATTCATTTATGAAGG+TGG + chr8.2:76485291-76485310 MS.gene011207:intron 25.0%
! TAATCACTAATTCCATTCTT+TGG + chr8.2:76485648-76485667 MS.gene011207:intron 25.0%
!!! AGGTTTCTCTTTTTTTTCAT+TGG - chr8.2:76484709-76484728 None:intergenic 25.0%
!!! GTTGCTCTTTTTTCAATAAT+GGG - chr8.2:76486093-76486112 None:intergenic 25.0%
!!! TGTTGCTCTTTTTTCAATAA+TGG - chr8.2:76486094-76486113 None:intergenic 25.0%
!!! TTTTTTGCTAGTAAACTCTT+TGG - chr8.2:76484867-76484886 None:intergenic 25.0%
!!! TTTTTTTTCATTGGTTGAGT+TGG - chr8.2:76484700-76484719 None:intergenic 25.0%
AAAAGTGGAAATTCCTAGTA+AGG + chr8.2:76485672-76485691 MS.gene011207:intron 30.0%
AATAATGTCTCTGGTAACTT+TGG + chr8.2:76486430-76486449 MS.gene011207:CDS 30.0%
AATATGCTGTTCAATCTGAT+TGG + chr8.2:76485144-76485163 MS.gene011207:CDS 30.0%
AATTTAGTTACCTTGAGAAG+AGG - chr8.2:76485223-76485242 None:intergenic 30.0%
ACCCAATTTGATGAAATGTT+CGG + chr8.2:76486589-76486608 MS.gene011207:CDS 30.0%
ACCGAACATTTCATCAAATT+GGG - chr8.2:76486593-76486612 None:intergenic 30.0%
AGAGATGATCAACATTATGT+GGG - chr8.2:76486159-76486178 None:intergenic 30.0%
AGAGTTTACTAGCAAAAAAC+AGG + chr8.2:76484868-76484887 MS.gene011207:CDS 30.0%
ATTTAGTTACCTTGAGAAGA+GGG - chr8.2:76485222-76485241 None:intergenic 30.0%
CATTATTGAGAGAATCAACT+TGG - chr8.2:76486417-76486436 None:intergenic 30.0%
CTTGTTGAGGATTATTGAAT+TGG - chr8.2:76486057-76486076 None:intergenic 30.0%
TCAAGTTCAACAACAATACT+TGG + chr8.2:76484669-76484688 MS.gene011207:CDS 30.0%
TGGGTCTTAATATTCATAGT+TGG - chr8.2:76486394-76486413 None:intergenic 30.0%
! AAGTATTGTTGTTGAACTTG+AGG - chr8.2:76484670-76484689 None:intergenic 30.0%
! AGTATTGTTGTTGAACTTGA+GGG - chr8.2:76484669-76484688 None:intergenic 30.0%
! ATTCCATTCTTTGGAAAAAG+TGG + chr8.2:76485657-76485676 MS.gene011207:intron 30.0%
! TTATGATGAGTTTTGCAGAA+GGG + chr8.2:76485886-76485905 MS.gene011207:intron 30.0%
! TTTATGATGAGTTTTGCAGA+AGG + chr8.2:76485885-76485904 MS.gene011207:intron 30.0%
!!! AATGATGTTTTTTTCAGACC+CGG + chr8.2:76484818-76484837 MS.gene011207:intron 30.0%
!!! TAGGTTTTGAATTGTATCCT+AGG + chr8.2:76485317-76485336 MS.gene011207:intron 30.0%
!!! TTTCCACTTTTTCCAAAGAA+TGG - chr8.2:76485663-76485682 None:intergenic 30.0%
AAAAAAAAGAGAAACCTCCC+TGG + chr8.2:76484712-76484731 MS.gene011207:CDS 35.0%
AAAGCTCATTCCAAAACATG+TGG + chr8.2:76485167-76485186 MS.gene011207:CDS 35.0%
AAGAAGGTTGAAAACAAACC+TGG - chr8.2:76484742-76484761 None:intergenic 35.0%
AATCTTCAACTTCACAGAAG+AGG + chr8.2:76484933-76484952 MS.gene011207:CDS 35.0%
ACACACTTGATTTCTTGCAT+CGG + chr8.2:76485584-76485603 MS.gene011207:intron 35.0%
AGAAGGTTGAAAACAAACCT+GGG - chr8.2:76484741-76484760 None:intergenic 35.0%
AGAATGTCACTATGTGACAA+TGG - chr8.2:76486751-76486770 None:intergenic 35.0%
AGAGAATATAGATGTGACTG+TGG + chr8.2:76485194-76485213 MS.gene011207:CDS 35.0%
AGGTTTGACAAGAGATTTCT+TGG + chr8.2:76486717-76486736 MS.gene011207:CDS 35.0%
ATCAATCTCAAAAGCCATCA+TGG + chr8.2:76486818-76486837 MS.gene011207:CDS 35.0%
ATTGAGAGAATCAACTTGGT+GGG - chr8.2:76486413-76486432 None:intergenic 35.0%
ATTTGTGAGATCTGCAACAA+AGG + chr8.2:76484894-76484913 MS.gene011207:CDS 35.0%
CAATTTGATGAAATGTTCGG+TGG + chr8.2:76486592-76486611 MS.gene011207:CDS 35.0%
CACCGAACATTTCATCAAAT+TGG - chr8.2:76486594-76486613 None:intergenic 35.0%
GAAGAGGTCATAATTTACCA+TGG + chr8.2:76484949-76484968 MS.gene011207:CDS 35.0%
GAGAGATGATCAACATTATG+TGG - chr8.2:76486160-76486179 None:intergenic 35.0%
GATTCTCTCAATAATGTCTC+TGG + chr8.2:76486421-76486440 MS.gene011207:CDS 35.0%
GGTTTGACAAGAGATTTCTT+GGG + chr8.2:76486718-76486737 MS.gene011207:CDS 35.0%
GTTTGACAAGAGATTTCTTG+GGG + chr8.2:76486719-76486738 MS.gene011207:CDS 35.0%
TAAAGAGAGAGAGAGAGAAA+AGG + chr8.2:76485774-76485793 MS.gene011207:intron 35.0%
TATTGAGAGAATCAACTTGG+TGG - chr8.2:76486414-76486433 None:intergenic 35.0%
TCAAACTTAACTTCTGCATC+TGG + chr8.2:76484589-76484608 MS.gene011207:CDS 35.0%
TCATGTTATCCAATGTCTCT+GGG + chr8.2:76485380-76485399 MS.gene011207:intron 35.0%
TCATTTATGAAGGTGGTCAT+AGG + chr8.2:76485298-76485317 MS.gene011207:intron 35.0%
TCTGGTAACAGAACTGAAAT+TGG + chr8.2:76484628-76484647 MS.gene011207:CDS 35.0%
TGTTGTTGTGAGGGTAAAAT+TGG - chr8.2:76485989-76486008 None:intergenic 35.0%
! AGTGACATTCTAAGTATTGC+AGG + chr8.2:76486760-76486779 MS.gene011207:CDS 35.0%
! ATTCTAAGTATTGCAGGGAT+TGG + chr8.2:76486766-76486785 MS.gene011207:CDS 35.0%
! ATTGTATCCTAGGTTGACTT+TGG + chr8.2:76485327-76485346 MS.gene011207:intron 35.0%
! GTGACATTCTAAGTATTGCA+GGG + chr8.2:76486761-76486780 MS.gene011207:CDS 35.0%
! TCTAAAACAACCACCAATGA+CGG + chr8.2:76486664-76486683 MS.gene011207:CDS 35.0%
! TGATGAGAAGATGATGATGA+AGG - chr8.2:76486013-76486032 None:intergenic 35.0%
! TTTTCTTCTTCATCTCCTTC+TGG + chr8.2:76486556-76486575 MS.gene011207:CDS 35.0%
!! AAGGTACTGTTTGGTAAGAA+GGG - chr8.2:76486288-76486307 None:intergenic 35.0%
!! ATGATCCATCAAGAGCATTA+GGG + chr8.2:76485045-76485064 MS.gene011207:CDS 35.0%
!!! TTTTTCATTGGTTGAGTTGG+AGG - chr8.2:76484697-76484716 None:intergenic 35.0%
AAAACAAACCTGGGTTACCA+GGG - chr8.2:76484732-76484751 None:intergenic 40.0%
AAATCCCCTAATGCTCTTGA+TGG - chr8.2:76485053-76485072 None:intergenic 40.0%
ACATGAACAAGACTAGGGTT+AGG - chr8.2:76486250-76486269 None:intergenic 40.0%
ATAGCTATAACCTCAGCATC+CGG - chr8.2:76484840-76484859 None:intergenic 40.0%
CAGGAACATGAACAAGACTA+GGG - chr8.2:76486255-76486274 None:intergenic 40.0%
CATGAACAAGACTAGGGTTA+GGG - chr8.2:76486249-76486268 None:intergenic 40.0%
GAAGTAGTTGCAGTAGTTGT+TGG - chr8.2:76486505-76486524 None:intergenic 40.0%
GGTGCAACAATGAATAGAAC+TGG + chr8.2:76486355-76486374 MS.gene011207:CDS 40.0%
GTCATGTTATCCAATGTCTC+TGG + chr8.2:76485379-76485398 MS.gene011207:intron 40.0%
GTTCTTTGCTTCAACTTCCA+TGG - chr8.2:76484969-76484988 None:intergenic 40.0%
TTATGCACCAAAGTCAACCT+AGG - chr8.2:76485337-76485356 None:intergenic 40.0%
TTGCAGAAAGCAGCTCAAAT+GGG + chr8.2:76486334-76486353 MS.gene011207:CDS 40.0%
! AAGCACTTTTCCAGAAAGCA+TGG + chr8.2:76485086-76485105 MS.gene011207:CDS 40.0%
! GATGAAGGTTGTTGTTGTGA+GGG - chr8.2:76485998-76486017 None:intergenic 40.0%
! TGATGAAGGTTGTTGTTGTG+AGG - chr8.2:76485999-76486018 None:intergenic 40.0%
! TTCTCTAGTGCCACATGTTT+TGG - chr8.2:76485180-76485199 None:intergenic 40.0%
!! ACCTTTCTGAAATTCCACCT+TGG + chr8.2:76486128-76486147 MS.gene011207:CDS 40.0%
!! CATGATCCATCAAGAGCATT+AGG + chr8.2:76485044-76485063 MS.gene011207:CDS 40.0%
!! GAAGGTACTGTTTGGTAAGA+AGG - chr8.2:76486289-76486308 None:intergenic 40.0%
!! TGATCCATCAAGAGCATTAG+GGG + chr8.2:76485046-76485065 MS.gene011207:CDS 40.0%
!!! CCTCTTTTGACTTCGTTAAC+CGG - chr8.2:76485409-76485428 None:intergenic 40.0%
AAAACAACCACCAATGACGG+TGG + chr8.2:76486667-76486686 MS.gene011207:CDS 45.0%
AGAGAGAGAGAGAGAAAAGG+AGG + chr8.2:76485777-76485796 MS.gene011207:intron 45.0%
CAAGAGATTTCTTGGGGCTT+AGG + chr8.2:76486725-76486744 MS.gene011207:CDS 45.0%
CCAGGAACATGAACAAGACT+AGG - chr8.2:76486256-76486275 None:intergenic 45.0%
CCGGTTAACGAAGTCAAAAG+AGG + chr8.2:76485406-76485425 MS.gene011207:intron 45.0%
CTTCTTCTCACCATGCTTTC+TGG - chr8.2:76485099-76485118 None:intergenic 45.0%
GAAAACAAACCTGGGTTACC+AGG - chr8.2:76484733-76484752 None:intergenic 45.0%
GAGAGAGAGAGAGAAAAGGA+GGG + chr8.2:76485778-76485797 MS.gene011207:intron 45.0%
GCCAAGGTGGAATTTCAGAA+AGG - chr8.2:76486132-76486151 None:intergenic 45.0%
GGAAATGCTAATAGTGTCCC+CGG - chr8.2:76485531-76485550 None:intergenic 45.0%
GGATCATGATGCACACAAGT+TGG - chr8.2:76485032-76485051 None:intergenic 45.0%
GGTGAAGCTAGTGTTTCTTC+TGG + chr8.2:76484610-76484629 MS.gene011207:CDS 45.0%
GTTCCAACAGCAACAAGTAG+TGG + chr8.2:76484555-76484574 MS.gene011207:CDS 45.0%
GTTGCAGAAAGCAGCTCAAA+TGG + chr8.2:76486333-76486352 MS.gene011207:CDS 45.0%
TAGCTATAACCTCAGCATCC+GGG - chr8.2:76484839-76484858 None:intergenic 45.0%
TCTCAAAAGCCATCATGGCA+AGG + chr8.2:76486823-76486842 MS.gene011207:CDS 45.0%
TGGGTTGCTTCAAATCCAGA+AGG - chr8.2:76486574-76486593 None:intergenic 45.0%
TGTTTGGTAAGAAGGGAGTG+TGG - chr8.2:76486281-76486300 None:intergenic 45.0%
TTCAGCTCACATGTCAGCTA+CGG + chr8.2:76486306-76486325 MS.gene011207:CDS 45.0%
! AGAGCATTAGGGGATTTGAC+TGG + chr8.2:76485056-76485075 MS.gene011207:CDS 45.0%
! CTTCCACTACTTGTTGCTGT+TGG - chr8.2:76484561-76484580 None:intergenic 45.0%
! GAAAGCATGGTGAGAAGAAG+TGG + chr8.2:76485099-76485118 MS.gene011207:CDS 45.0%
! GTTTGGTAAGAAGGGAGTGT+GGG - chr8.2:76486280-76486299 None:intergenic 45.0%
! TCTGAAATTCCACCTTGGCT+TGG + chr8.2:76486133-76486152 MS.gene011207:CDS 45.0%
! TGACTCCTTAATCGGTGTTC+CGG + chr8.2:76485509-76485528 MS.gene011207:intron 45.0%
!! CCTAGTCTTGTTCATGTTCC+TGG + chr8.2:76486253-76486272 MS.gene011207:CDS 45.0%
!! TGATGCACACAAGTTGGTTC+TGG - chr8.2:76485026-76485045 None:intergenic 45.0%
!! TGTGAGCTGAAGGTACTGTT+TGG - chr8.2:76486297-76486316 None:intergenic 45.0%
ACATTATGTGGGCCAAGCCA+AGG - chr8.2:76486148-76486167 None:intergenic 50.0%
ACTGTGGAACCCTCTTCTCA+AGG + chr8.2:76485210-76485229 MS.gene011207:CDS 50.0%
GTAGCTGACATGTGAGCTGA+AGG - chr8.2:76486307-76486326 None:intergenic 50.0%
! ACTCCTTAATCGGTGTTCCG+GGG + chr8.2:76485511-76485530 MS.gene011207:intron 50.0%
! GACTCCTTAATCGGTGTTCC+GGG + chr8.2:76485510-76485529 MS.gene011207:intron 50.0%
!! ATCCAATGTCTCTGGGACAC+CGG + chr8.2:76485387-76485406 MS.gene011207:intron 50.0%
!! TTTTTCAGACCCGGATGCTG+AGG + chr8.2:76484827-76484846 MS.gene011207:intron 50.0%
AACCGGTGTCCCAGAGACAT+TGG - chr8.2:76485392-76485411 None:intergenic 55.0%
ACAAACCTGGGTTACCAGGG+AGG - chr8.2:76484729-76484748 None:intergenic 55.0%
ACAACCACCAATGACGGTGG+CGG + chr8.2:76486670-76486689 MS.gene011207:CDS 55.0%
AGAAACCTCCCTGGTAACCC+AGG + chr8.2:76484721-76484740 MS.gene011207:CDS 55.0%
TTATGTGGGCCAAGCCAAGG+TGG - chr8.2:76486145-76486164 None:intergenic 55.0%
! TAAGAAGGGAGTGTGGGTCC+AGG - chr8.2:76486274-76486293 None:intergenic 55.0%
! TGTCCCCGGAACACCGATTA+AGG - chr8.2:76485517-76485536 None:intergenic 55.0%
! ACCACCAATGACGGTGGCGG+CGG + chr8.2:76486673-76486692 MS.gene011207:CDS 65.0%
!! GGCGGCGGTGGTGGAAATGA+AGG + chr8.2:76486697-76486716 MS.gene011207:CDS 65.0%
! ACCAATGACGGTGGCGGCGG+CGG + chr8.2:76486676-76486695 MS.gene011207:CDS 70.0%
GCCGCCGCCACCGTCATTGG+TGG - chr8.2:76486677-76486696 None:intergenic 75.0%
! AATGACGGTGGCGGCGGCGG+CGG + chr8.2:76486679-76486698 MS.gene011207:CDS 75.0%
! GCCGCCGCCGCCACCGTCAT+TGG - chr8.2:76486680-76486699 None:intergenic 80.0%
!! GACGGTGGCGGCGGCGGCGG+CGG + chr8.2:76486682-76486701 MS.gene011207:CDS 90.0%
! GGCGGCGGCGGCGGCGGTGG+TGG + chr8.2:76486688-76486707 MS.gene011207:CDS 95.0%
!! GGTGGCGGCGGCGGCGGCGG+TGG + chr8.2:76486685-76486704 MS.gene011207:CDS 95.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 76484535 76486849 76484535 ID=MS.gene011207
chr8.2 mRNA 76484535 76486849 76484535 ID=MS.gene011207.t1;Parent=MS.gene011207
chr8.2 exon 76484535 76484742 76484535 ID=MS.gene011207.t1.exon1;Parent=MS.gene011207.t1
chr8.2 CDS 76484535 76484742 76484535 ID=cds.MS.gene011207.t1;Parent=MS.gene011207.t1
chr8.2 exon 76484835 76485231 76484835 ID=MS.gene011207.t1.exon2;Parent=MS.gene011207.t1
chr8.2 CDS 76484835 76485231 76484835 ID=cds.MS.gene011207.t1;Parent=MS.gene011207.t1
chr8.2 exon 76485904 76486849 76485904 ID=MS.gene011207.t1.exon3;Parent=MS.gene011207.t1
chr8.2 CDS 76485904 76486849 76485904 ID=cds.MS.gene011207.t1;Parent=MS.gene011207.t1
Gene Sequence

>MS.gene011207

ATGGTAAAAGGTTTGATGATGTTCCAACAGCAACAAGTAGTGGAAGAAAACATGTCAAACTTAACTTCTGCATCTGGTGAAGCTAGTGTTTCTTCTGGTAACAGAACTGAAATTGGTACTAGTAGTAGTTACCCTCAAGTTCAACAACAATACTTGGTTCCTCCAACTCAACCAATGAAAAAAAAGAGAAACCTCCCTGGTAACCCAGGTTTGTTTTCAACCTTCTTTTTGTTTTGTTTTGTTTTGATAAACATGTTATTAATGGGTTTTTTTTTGTTTGGAAAATGATGTTTTTTTCAGACCCGGATGCTGAGGTTATAGCTATGTCACCAAAGAGTTTACTAGCAAAAAACAGGTTCATTTGTGAGATCTGCAACAAAGGCTTTCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGTCATAATTTACCATGGAAGTTGAAGCAAAGAACAAGCAAAGAGATTAGAAAGAAAGTTTATGTATGTCCAGAACCAACTTGTGTGCATCATGATCCATCAAGAGCATTAGGGGATTTGACTGGAATCAAGAAGCACTTTTCCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAACATGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGGTAACTAAATTAACATCAAAATATTCAATGTCATGTGAATTTTTTTAGTTCAGACATTAATTTCATTCATTTATGAAGGTGGTCATAGGTTTTGAATTGTATCCTAGGTTGACTTTGGTGCATAAATTTCACATTATTAATATTAAGGTCATGTTATCCAATGTCTCTGGGACACCGGTTAACGAAGTCAAAAGAGGAAATTTTAAACCAAAAAGAAAACATTTTAAACTTTTAATGCATTGAATACACAACTTTCAATTCAAAATATTACTATATTTGACTCCTTAATCGGTGTTCCGGGGACACTATTAGCATTTCCCTTAATATTATATAGTTTTACATTTATTTTTACACACACTTGATTTCTTGCATCGGAGAAGATGATGATGATAAGACATTGATATAGCACTCTCCCATAATCACTAATTCCATTCTTTGGAAAAAGTGGAAATTCCTAGTAAGGAAATTTTTTAATGCACTACCTAATAATAGACTATTTGTCTTTAAAGTATTTAGAAAGTTTTTAAAAAATGTTGAAAAAGTAAAGAGAGAGAGAGAGAAAAGGAGGGTTAATATTTTTTCACTGTCACACACATATATTTATAGTATATTTAGCATATAGCACTTTAGTAAAATTTATTAATTTTGTAATTTTTATGATGAGTTTTGCAGAAGGGACAGTTTCATAACACATAGAGCATTTTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCTATGACAAATAATGCAATGCCAATTTTACCCTCACAACAACAACCTTCATCATCATCTTCTCATCATCACATGATAAATCTACAAAACCAATTCAATAATCCTCAACAAGATTTTCATAATTTCCCATTATTGAAAAAAGAGCAACATAATCAAAGTTTTAACCTTTCTGAAATTCCACCTTGGCTTGGCCCACATAATGTTGATCATCTCTCATCATCATCATCAATATTTTCTCAAAGTAATCAATTTTCATCACAAACACAACATCATCAAGAAAACCCTAACCCTAGTCTTGTTCATGTTCCTGGACCCACACTCCCTTCTTACCAAACAGTACCTTCAGCTCACATGTCAGCTACGGCATTGTTGCAGAAAGCAGCTCAAATGGGTGCAACAATGAATAGAACTGGTTCTGCTTCTTCACCAACTATGAATATTAAGACCCACCAAGTTGATTCTCTCAATAATGTCTCTGGTAACTTTGGTTTGAATTTGTTGTCATCATCACAAGAACAACAACATCAACAAAACACACCAACAACTACTGCAACTACTTCTTCATATCTTAGTAATATTCATGATGTTATGTTTTCTTCTTCATCTCCTTCTGGATTTGAAGCAACCCAATTTGATGAAATGTTCGGTGGCATTATGAATTCAAAGAAAGATCAAAACTTGCATGATGAGAAAGTAATCTCTAAAACAACCACCAATGACGGTGGCGGCGGCGGCGGCGGTGGTGGAAATGAAGGTTTGACAAGAGATTTCTTGGGGCTTAGGCCATTGTCACATAGTGACATTCTAAGTATTGCAGGGATTGGAAACTGCATGAATGATCAACAACAACAAAATCAATCTCAAAAGCCATCATGGCAAGGTTAG
Protein sequence

>MS.gene011207.t1

MVKGLMMFQQQQVVEENMSNLTSASGEASVSSGNRTEIGTSSSYPQVQQQYLVPPTQPMKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNNAMPILPSQQQPSSSSSHHHMINLQNQFNNPQQDFHNFPLLKKEQHNQSFNLSEIPPWLGPHNVDHLSSSSSIFSQSNQFSSQTQHHQENPNPSLVHVPGPTLPSYQTVPSAHMSATALLQKAAQMGATMNRTGSASSPTMNIKTHQVDSLNNVSGNFGLNLLSSSQEQQHQQNTPTTTATTSSYLSNIHDVMFSSSSPSGFEATQFDEMFGGIMNSKKDQNLHDEKVISKTTTNDGGGGGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQQQQNQSQKPSWQG