AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01121

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01121.t1 MTR_2g008030 98.246 342 6 0 1 342 1 342 0.0 695
MS.gene01121.t1 MTR_6g035305 84.478 335 52 0 1 335 1 335 0.0 600
MS.gene01121.t1 MTR_7g066120 50.292 342 152 2 11 335 71 411 5.13e-116 342
MS.gene01121.t1 MTR_0776s0010 40.729 329 187 5 7 328 284 611 2.56e-84 278
MS.gene01121.t1 MTR_4g093620 42.258 310 156 6 32 331 87 383 3.60e-76 239
MS.gene01121.t1 MTR_3g070100 30.961 281 173 8 67 342 116 380 9.30e-23 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01121.t1 AT1G43670 80.531 339 66 0 1 339 1 339 0.0 583
MS.gene01121.t1 AT3G54050 50.294 340 153 3 11 335 79 417 6.23e-116 342
MS.gene01121.t1 AT3G54050 50.294 340 153 3 11 335 79 417 6.23e-116 342
MS.gene01121.t1 AT5G64380 40.881 318 168 8 32 339 89 396 4.46e-74 234
MS.gene01121.t1 AT3G55800 30.961 281 165 9 67 338 123 383 7.42e-23 98.6

Find 68 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCAATCACATTGTTCT+TGG 0.178736 2.1:+74500865 MS.gene01121:CDS
GAATAAATCTTTCCTTTCTT+TGG 0.198088 2.1:-74502954 None:intergenic
CACTATTGCATATAGATCTT+TGG 0.249832 2.1:+74502461 MS.gene01121:intron
ACTGACTTGCCACGCTGTGC+TGG 0.263816 2.1:-74502196 None:intergenic
CTTACCTTAGCTTTCCATTT+GGG 0.272278 2.1:-74503354 None:intergenic
CATAGTTGTGTTTGATCCTT+TGG 0.288689 2.1:+74502307 MS.gene01121:CDS
CCAAAGTCTCTTAGGTATAT+TGG 0.298619 2.1:+74503171 MS.gene01121:CDS
TATGCAGAATCCAAAGAAAA+TGG 0.326692 2.1:+74504141 MS.gene01121:CDS
TGTGCGTCCGCTGCTGATTA+AGG 0.328499 2.1:-74501992 None:intergenic
ATTGATTGTGGAGTTTCAAT+AGG 0.341565 2.1:+74502344 MS.gene01121:CDS
CACCATATAGTAATGTTCTA+TGG 0.360121 2.1:-74503300 None:intergenic
GTCCATAGAACATTACTATA+TGG 0.361668 2.1:+74503298 MS.gene01121:CDS
GTTCACCACCAAAGTCTCTT+AGG 0.374034 2.1:+74503163 MS.gene01121:CDS
CTGACTTGCCACGCTGTGCT+GGG 0.376754 2.1:-74502195 None:intergenic
TCGTAGCTTCCAAGGAATAT+TGG 0.381749 2.1:-74504093 None:intergenic
TCTTACCTTAGCTTTCCATT+TGG 0.382968 2.1:-74503355 None:intergenic
AATGCATGTACCTTGATGTT+TGG 0.391145 2.1:-74502827 None:intergenic
TTTGTGCTTAGCACAGGAAA+TGG 0.404030 2.1:+74502752 MS.gene01121:CDS
ATGCATGTACCTTGATGTTT+GGG 0.428381 2.1:-74502826 None:intergenic
TTTACACTTGATCCTTCCCT+TGG 0.433839 2.1:+74502785 MS.gene01121:CDS
AAAGATTTATTCTGTGAATG+AGG 0.439092 2.1:+74502965 MS.gene01121:CDS
CCAATATACCTAAGAGACTT+TGG 0.448075 2.1:-74503171 None:intergenic
GCAGCTGGTTACTGCATGTA+TGG 0.456073 2.1:+74502554 MS.gene01121:CDS
CTGATTTGATGACAATAACT+AGG 0.457076 2.1:+74500788 MS.gene01121:CDS
AGCACAGGAAATGGAGTGAA+TGG 0.467256 2.1:+74502761 MS.gene01121:CDS
AACAAAACTCACTTGAACAT+TGG 0.470224 2.1:-74501067 None:intergenic
ATTGCAACCTGGGAGCAGTT+TGG 0.473530 2.1:+74502529 MS.gene01121:CDS
AACTCCACAATCAATGTTTG+AGG 0.474075 2.1:-74502336 None:intergenic
TGACTTGCCACGCTGTGCTG+GGG 0.480596 2.1:-74502194 None:intergenic
GATCGATCGCCAATATTCCT+TGG 0.483711 2.1:+74504084 MS.gene01121:CDS
GGGAGCAGTTTGGTAGCAGC+TGG 0.487734 2.1:+74502539 MS.gene01121:CDS
TGGTGTCTCCAGCAAGTCCT+AGG 0.492171 2.1:-74501047 None:intergenic
TCCAAAACTTACTTGGCCGT+TGG 0.497852 2.1:-74503011 None:intergenic
AAGATTTATTCTGTGAATGA+GGG 0.501287 2.1:+74502966 MS.gene01121:CDS
TTGCAGTTTGTGCTTAGCAC+AGG 0.508953 2.1:+74502746 MS.gene01121:intron
GTTGAAGATGCATTGCAACC+TGG 0.510015 2.1:+74502518 MS.gene01121:CDS
GTGCCTTCTTGTTTCAGAAG+AGG 0.512489 2.1:+74502150 MS.gene01121:intron
CAGTTCTGTTAGCATCTGCT+TGG 0.515272 2.1:-74500768 None:intergenic
TTGAAGATGCATTGCAACCT+GGG 0.517948 2.1:+74502519 MS.gene01121:CDS
TTCTAATGAAGTATTTGTGA+AGG 0.533564 2.1:+74501969 MS.gene01121:CDS
GTTGTGTTTGATCCTTTGGA+TGG 0.544716 2.1:+74502311 MS.gene01121:CDS
CAATTTCATCGTAGCTTCCA+AGG 0.546062 2.1:-74504101 None:intergenic
GACTTGCCACGCTGTGCTGG+GGG 0.552070 2.1:-74502193 None:intergenic
TGCTCCATCAAATATGACAT+TGG 0.555129 2.1:-74503735 None:intergenic
GGTTCCTCAAACATTGATTG+TGG 0.568496 2.1:+74502332 MS.gene01121:CDS
AACAATGTGATTGATGAGAA+TGG 0.568531 2.1:-74500860 None:intergenic
TCATATTTGATGGAGCAAGC+AGG 0.570588 2.1:+74503741 MS.gene01121:CDS
GAGTCAATATGAACTCTCCA+AGG 0.570901 2.1:-74502802 None:intergenic
TGTTTGTTCTTCTGTTAACA+AGG 0.573073 2.1:+74500897 MS.gene01121:CDS
ACTTCATAGATACCAAAGAA+AGG 0.574423 2.1:+74502942 MS.gene01121:intron
AGCTTTCACAGGAAAACAAA+GGG 0.576524 2.1:+74503770 MS.gene01121:CDS
GCAGGAGGTCAAGCTTTCAC+AGG 0.578987 2.1:+74503759 MS.gene01121:CDS
AGTCTCTTAGGTATATTGGC+AGG 0.582669 2.1:+74503175 MS.gene01121:CDS
CAACCTCTTCTGAAACAAGA+AGG 0.591219 2.1:-74502153 None:intergenic
CATGTATGGAAGCTCTTGCA+CGG 0.591600 2.1:+74502568 MS.gene01121:CDS
AAAACCCAAATGGAAAGCTA+AGG 0.592700 2.1:+74503350 MS.gene01121:CDS
TTTGGTGGTGAACTGTCTTG+TGG 0.594367 2.1:-74503153 None:intergenic
GCTGCTACCAAACTGCTCCC+AGG 0.598305 2.1:-74502536 None:intergenic
ATTGACTCACCCAAACATCA+AGG 0.604776 2.1:+74502817 MS.gene01121:CDS
AATATGAACTCTCCAAGGGA+AGG 0.611205 2.1:-74502797 None:intergenic
AAGCTTTCACAGGAAAACAA+AGG 0.624169 2.1:+74503769 MS.gene01121:CDS
GTGAAGGCCTTAATCAGCAG+CGG 0.626415 2.1:+74501985 MS.gene01121:CDS
CATAGAACATTACTATATGG+TGG 0.639132 2.1:+74503301 MS.gene01121:CDS
ATATACCTAAGAGACTTTGG+TGG 0.639800 2.1:-74503168 None:intergenic
AGTCAATATGAACTCTCCAA+GGG 0.668311 2.1:-74502801 None:intergenic
ATGTTTGAGGAACCATCCAA+AGG 0.670132 2.1:-74502323 None:intergenic
TCAAAGTATGCTGAATCACG+TGG 0.673339 2.1:+74500829 MS.gene01121:CDS
TATTTGATGGAGCAAGCAGG+AGG 0.695622 2.1:+74503744 MS.gene01121:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAACATTCAATTAA+TGG - chr2.1:74500996-74501015 None:intergenic 10.0%
!! TAAATTAACATAAAGTTATT+AGG + chr2.1:74502872-74502891 MS.gene01121:intron 10.0%
!! TTTATTTAATATGAGTTTAA+TGG + chr2.1:74501227-74501246 MS.gene01121:intron 10.0%
!!! TTGATAAATATAGAATATTT+TGG - chr2.1:74502223-74502242 None:intergenic 10.0%
!! AATATTATTTCAGATTTAGA+TGG - chr2.1:74501189-74501208 None:intergenic 15.0%
!! ATAATATTACATGGATATAA+AGG - chr2.1:74501415-74501434 None:intergenic 15.0%
!! ATGTTTAAACTAATAACTTA+TGG + chr2.1:74503666-74503685 MS.gene01121:intron 15.0%
!! GTTGAAAATATAATATTACA+TGG - chr2.1:74501424-74501443 None:intergenic 15.0%
!!! TAATTCATATGCATTTTATT+TGG + chr2.1:74502079-74502098 MS.gene01121:intron 15.0%
!!! TTATAATTTTTTTTACTGAC+AGG + chr2.1:74501008-74501027 MS.gene01121:intron 15.0%
!! AAATTTGACTGTAAATTATC+AGG + chr2.1:74503694-74503713 MS.gene01121:intron 20.0%
!! AATAAAATGAAGAAACTTGA+AGG - chr2.1:74503240-74503259 None:intergenic 20.0%
!! AATTTGACTGTAAATTATCA+GGG + chr2.1:74503695-74503714 MS.gene01121:intron 20.0%
!! ACGATTAAATAACTGATATA+AGG - chr2.1:74503972-74503991 None:intergenic 20.0%
!! CACGTAACATTATAAATTAA+AGG - chr2.1:74501108-74501127 None:intergenic 20.0%
!! TAACATTCTATTAGCATAAT+CGG - chr2.1:74502605-74502624 None:intergenic 20.0%
!! TAGAAATTAGTACTAAGATA+TGG - chr2.1:74501308-74501327 None:intergenic 20.0%
!!! AAAATGCAATTTTTTTGCTT+TGG + chr2.1:74502125-74502144 MS.gene01121:intron 20.0%
!!! AAATCGAATTTAAAGCTAAT+TGG - chr2.1:74501537-74501556 None:intergenic 20.0%
!!! AAATTGCATTTTACTAAATC+AGG - chr2.1:74502117-74502136 None:intergenic 20.0%
!!! AAGGAATTCAAGTATTTTAA+AGG - chr2.1:74501616-74501635 None:intergenic 20.0%
!!! AAGTTATTAGGTTTTTACTT+AGG + chr2.1:74502884-74502903 MS.gene01121:intron 20.0%
!!! AGGAATTCAAGTATTTTAAA+GGG - chr2.1:74501615-74501634 None:intergenic 20.0%
!!! CTTTATTTTGTTCTTTTTGT+TGG + chr2.1:74502038-74502057 MS.gene01121:intron 20.0%
! AAAATATAGCAATCAAGCTT+GGG - chr2.1:74502401-74502420 None:intergenic 25.0%
! AAAGATTTATTCTGTGAATG+AGG + chr2.1:74502965-74502984 MS.gene01121:CDS 25.0%
! AACTTTATGTAGTTTGATCT+TGG + chr2.1:74503210-74503229 MS.gene01121:intron 25.0%
! AAGATTTATTCTGTGAATGA+GGG + chr2.1:74502966-74502985 MS.gene01121:CDS 25.0%
! ACATATCATATAACACAACT+CGG - chr2.1:74503650-74503669 None:intergenic 25.0%
! ACTACATATCCCAATAATTT+AGG - chr2.1:74503566-74503585 None:intergenic 25.0%
! ATAGTGGTGAATAGAAAAAT+AGG - chr2.1:74501915-74501934 None:intergenic 25.0%
! CAGTTATTTAATCGTTGAAT+TGG + chr2.1:74503977-74503996 MS.gene01121:intron 25.0%
! CCAAGTATTATAAGTTTCTA+TGG - chr2.1:74501822-74501841 None:intergenic 25.0%
! CCATAGAAACTTATAATACT+TGG + chr2.1:74501819-74501838 MS.gene01121:intron 25.0%
! GAATAAATCTTTCCTTTCTT+TGG - chr2.1:74502957-74502976 None:intergenic 25.0%
! GGATGTTGATGTAAAAATAA+TGG - chr2.1:74501265-74501284 None:intergenic 25.0%
! TAAAATATAGCAATCAAGCT+TGG - chr2.1:74502402-74502421 None:intergenic 25.0%
! TAGTGGTGAATAGAAAAATA+GGG - chr2.1:74501914-74501933 None:intergenic 25.0%
! TCACACAAAAAAGATTTAGA+TGG - chr2.1:74501158-74501177 None:intergenic 25.0%
! TTCTATTCACCACTATTTAA+GGG + chr2.1:74501919-74501938 MS.gene01121:intron 25.0%
! TTTCTATTCACCACTATTTA+AGG + chr2.1:74501918-74501937 MS.gene01121:intron 25.0%
!! AATTCAGATTCCTTTTCTAT+CGG - chr2.1:74503465-74503484 None:intergenic 25.0%
!! GATGTGTATTGAATTTTCAT+TGG + chr2.1:74501348-74501367 MS.gene01121:intron 25.0%
!! GTATTGAATTTTCATTGGAT+TGG + chr2.1:74501353-74501372 MS.gene01121:intron 25.0%
!! TTCTAATGAAGTATTTGTGA+AGG + chr2.1:74501969-74501988 MS.gene01121:CDS 25.0%
!! TTTTCCAATGTCATATTTGA+TGG + chr2.1:74503731-74503750 MS.gene01121:CDS 25.0%
!!! ACCTAAGGACATTTTAAAAT+CGG + chr2.1:74503493-74503512 MS.gene01121:intron 25.0%
!!! TCATACGATAATTTTTTTGC+AGG + chr2.1:74504032-74504051 MS.gene01121:intron 25.0%
AAATACTTCCAAAACATGTG+CGG + chr2.1:74501506-74501525 MS.gene01121:intron 30.0%
AAATGATTCTCCGATAGAAA+AGG + chr2.1:74503452-74503471 MS.gene01121:intron 30.0%
AACAAAACTCACTTGAACAT+TGG - chr2.1:74501070-74501089 None:intergenic 30.0%
AACAAAATAAAGCAAACTCG+AGG - chr2.1:74502030-74502049 None:intergenic 30.0%
AACAATGTGATTGATGAGAA+TGG - chr2.1:74500863-74500882 None:intergenic 30.0%
AACTTGATGTAACAGAGATA+AGG + chr2.1:74501576-74501595 MS.gene01121:intron 30.0%
ACAAAATAAAGCAAACTCGA+GGG - chr2.1:74502029-74502048 None:intergenic 30.0%
ACATTTCACAAAGTTTCAAG+AGG + chr2.1:74501866-74501885 MS.gene01121:intron 30.0%
ACTTCATAGATACCAAAGAA+AGG + chr2.1:74502942-74502961 MS.gene01121:intron 30.0%
ATGGAAATAGAGACACTTAA+AGG - chr2.1:74501803-74501822 None:intergenic 30.0%
ATTGATTGTGGAGTTTCAAT+AGG + chr2.1:74502344-74502363 MS.gene01121:CDS 30.0%
CAATTTATTCGATCAGAATC+AGG - chr2.1:74502719-74502738 None:intergenic 30.0%
CACCATATAGTAATGTTCTA+TGG - chr2.1:74503303-74503322 None:intergenic 30.0%
CACTATTGCATATAGATCTT+TGG + chr2.1:74502461-74502480 MS.gene01121:intron 30.0%
CAGAATTTCCAAAACTTACT+TGG - chr2.1:74503021-74503040 None:intergenic 30.0%
CATAGAACATTACTATATGG+TGG + chr2.1:74503301-74503320 MS.gene01121:CDS 30.0%
GAAAAATGCACAATACAGTA+TGG + chr2.1:74503267-74503286 MS.gene01121:intron 30.0%
GTCCATAGAACATTACTATA+TGG + chr2.1:74503298-74503317 MS.gene01121:CDS 30.0%
TATGCAGAATCCAAAGAAAA+TGG + chr2.1:74504141-74504160 MS.gene01121:CDS 30.0%
TCATTTGATACTACATCTGA+TGG + chr2.1:74504000-74504019 MS.gene01121:intron 30.0%
TCTATTCACCACTATTTAAG+GGG + chr2.1:74501920-74501939 MS.gene01121:intron 30.0%
TGGAAATAGAGACACTTAAA+GGG - chr2.1:74501802-74501821 None:intergenic 30.0%
TGTTTGTTCTTCTGTTAACA+AGG + chr2.1:74500897-74500916 MS.gene01121:CDS 30.0%
TTAAAATGTCCTTAGGTCTT+AGG - chr2.1:74503490-74503509 None:intergenic 30.0%
TTCATGTTAACTCAAGAATC+AGG - chr2.1:74503064-74503083 None:intergenic 30.0%
TTCTGATCGAATAAATTGCA+CGG + chr2.1:74502721-74502740 MS.gene01121:intron 30.0%
! CTGATTTGATGACAATAACT+AGG + chr2.1:74500788-74500807 MS.gene01121:CDS 30.0%
! GATCGATCATGTATTTTCTT+AGG - chr2.1:74504072-74504091 None:intergenic 30.0%
! TACATCAAGTTTGCTTAAAC+CGG - chr2.1:74501567-74501586 None:intergenic 30.0%
! TTTTCTTTTCTCTAATGCAC+AGG - chr2.1:74501712-74501731 None:intergenic 30.0%
!! ACACATCACTCAGTTTTATA+AGG - chr2.1:74501335-74501354 None:intergenic 30.0%
!! ATGTATGGAGTATTGCAAAA+GGG - chr2.1:74503589-74503608 None:intergenic 30.0%
!! TATGTATGGAGTATTGCAAA+AGG - chr2.1:74503590-74503609 None:intergenic 30.0%
!!! AATTTTTTTTACTGACAGGC+TGG + chr2.1:74501012-74501031 MS.gene01121:intron 30.0%
!!! TCCGATTTTAAAATGTCCTT+AGG - chr2.1:74503497-74503516 None:intergenic 30.0%
AAAACCCAAATGGAAAGCTA+AGG + chr2.1:74503350-74503369 MS.gene01121:CDS 35.0%
AACTCCACAATCAATGTTTG+AGG - chr2.1:74502339-74502358 None:intergenic 35.0%
AAGCTTTCACAGGAAAACAA+AGG + chr2.1:74503769-74503788 MS.gene01121:CDS 35.0%
AATGCATGTACCTTGATGTT+TGG - chr2.1:74502830-74502849 None:intergenic 35.0%
ACATTTGATCTAGCATCCTT+AGG + chr2.1:74503412-74503431 MS.gene01121:intron 35.0%
ACTAAGATATGGAACTAGTG+TGG - chr2.1:74501297-74501316 None:intergenic 35.0%
AGCTTTCACAGGAAAACAAA+GGG + chr2.1:74503770-74503789 MS.gene01121:CDS 35.0%
AGTCAATATGAACTCTCCAA+GGG - chr2.1:74502804-74502823 None:intergenic 35.0%
ATATACCTAAGAGACTTTGG+TGG - chr2.1:74503171-74503190 None:intergenic 35.0%
ATGCATGTACCTTGATGTTT+GGG - chr2.1:74502829-74502848 None:intergenic 35.0%
CATAGTTGTGTTTGATCCTT+TGG + chr2.1:74502307-74502326 MS.gene01121:CDS 35.0%
CCAAAGTCTCTTAGGTATAT+TGG + chr2.1:74503171-74503190 MS.gene01121:CDS 35.0%
CCAATATACCTAAGAGACTT+TGG - chr2.1:74503174-74503193 None:intergenic 35.0%
CTATTCACCACTATTTAAGG+GGG + chr2.1:74501921-74501940 MS.gene01121:intron 35.0%
CTCATCAATCACATTGTTCT+TGG + chr2.1:74500865-74500884 MS.gene01121:CDS 35.0%
GCATTATGTTGCAGCTAAAT+TGG + chr2.1:74502845-74502864 MS.gene01121:intron 35.0%
GCTGATAAGAAAAACCCAAA+TGG + chr2.1:74503340-74503359 MS.gene01121:CDS 35.0%
GGTAAGACTCTGATATACTT+TGG + chr2.1:74503371-74503390 MS.gene01121:intron 35.0%
GTTCGAGGACCTAAATTATT+GGG + chr2.1:74503554-74503573 MS.gene01121:intron 35.0%
TCCATACATAGATGAGAACT+TGG + chr2.1:74503600-74503619 MS.gene01121:intron 35.0%
TGAGTGTGTAATTCACTTCA+AGG - chr2.1:74501635-74501654 None:intergenic 35.0%
TGCTCCATCAAATATGACAT+TGG - chr2.1:74503738-74503757 None:intergenic 35.0%
! CTTACCTTAGCTTTCCATTT+GGG - chr2.1:74503357-74503376 None:intergenic 35.0%
! TCTTACCTTAGCTTTCCATT+TGG - chr2.1:74503358-74503377 None:intergenic 35.0%
! TTGGGTTTTTCTTATCAGCA+GGG - chr2.1:74503339-74503358 None:intergenic 35.0%
!! TTTGGGTTTTTCTTATCAGC+AGG - chr2.1:74503340-74503359 None:intergenic 35.0%
AATATGAACTCTCCAAGGGA+AGG - chr2.1:74502800-74502819 None:intergenic 40.0%
ACTAACTCTCCTAAGACCTA+AGG - chr2.1:74503431-74503450 None:intergenic 40.0%
AGTCTCTTAGGTATATTGGC+AGG + chr2.1:74503175-74503194 MS.gene01121:CDS 40.0%
ATCTAGCATCCTTAGGTCTT+AGG + chr2.1:74503419-74503438 MS.gene01121:intron 40.0%
ATGTTTGAGGAACCATCCAA+AGG - chr2.1:74502326-74502345 None:intergenic 40.0%
CAAAAACTGGGATGAACCAA+CGG + chr2.1:74502995-74503014 MS.gene01121:CDS 40.0%
CAATTTCATCGTAGCTTCCA+AGG - chr2.1:74504104-74504123 None:intergenic 40.0%
CTGAATTCTCCTAAGACCTA+AGG + chr2.1:74503478-74503497 MS.gene01121:intron 40.0%
GAGTCAATATGAACTCTCCA+AGG - chr2.1:74502805-74502824 None:intergenic 40.0%
GCATCTCTGCATCTTCAATA+TGG + chr2.1:74503875-74503894 MS.gene01121:intron 40.0%
GCCAAGTTCTCATCTATGTA+TGG - chr2.1:74503604-74503623 None:intergenic 40.0%
GGTTCGAGGACCTAAATTAT+TGG + chr2.1:74503553-74503572 MS.gene01121:intron 40.0%
GTTGTGTTTGATCCTTTGGA+TGG + chr2.1:74502311-74502330 MS.gene01121:CDS 40.0%
TATGGGCCTAATTCTTGAGT+CGG - chr2.1:74503530-74503549 None:intergenic 40.0%
TCAAAGTATGCTGAATCACG+TGG + chr2.1:74500829-74500848 MS.gene01121:CDS 40.0%
TCATATTTGATGGAGCAAGC+AGG + chr2.1:74503741-74503760 MS.gene01121:CDS 40.0%
TCGTAGCTTCCAAGGAATAT+TGG - chr2.1:74504096-74504115 None:intergenic 40.0%
TTGAAGATGCATTGCAACCT+GGG + chr2.1:74502519-74502538 MS.gene01121:CDS 40.0%
TTTACACTTGATCCTTCCCT+TGG + chr2.1:74502785-74502804 MS.gene01121:CDS 40.0%
TTTGTGCTTAGCACAGGAAA+TGG + chr2.1:74502752-74502771 MS.gene01121:CDS 40.0%
! ATCAAGTTTGCTTAAACCGG+TGG - chr2.1:74501564-74501583 None:intergenic 40.0%
! ATTGACTCACCCAAACATCA+AGG + chr2.1:74502817-74502836 MS.gene01121:CDS 40.0%
! GGTTCCTCAAACATTGATTG+TGG + chr2.1:74502332-74502351 MS.gene01121:CDS 40.0%
! TAAATTCGATTTGCCTCCAC+CGG + chr2.1:74501545-74501564 MS.gene01121:intron 40.0%
! TTTTTACTGACAGGCTGGAT+TGG + chr2.1:74501017-74501036 MS.gene01121:intron 40.0%
!! CAACCTCTTCTGAAACAAGA+AGG - chr2.1:74502156-74502175 None:intergenic 40.0%
!!! TTTTTTGCAGGCACTTGACT+TGG + chr2.1:74504044-74504063 MS.gene01121:intron 40.0%
AGCACAGGAAATGGAGTGAA+TGG + chr2.1:74502761-74502780 MS.gene01121:CDS 45.0%
ATGAGGGAAACGCCAAAAAC+TGG + chr2.1:74502982-74503001 MS.gene01121:CDS 45.0%
CAGTTCTGTTAGCATCTGCT+TGG - chr2.1:74500771-74500790 None:intergenic 45.0%
CATGTATGGAAGCTCTTGCA+CGG + chr2.1:74502568-74502587 MS.gene01121:CDS 45.0%
GAACTAGTGTGGTATCTCGT+TGG - chr2.1:74501286-74501305 None:intergenic 45.0%
GATCGATCGCCAATATTCCT+TGG + chr2.1:74504084-74504103 MS.gene01121:CDS 45.0%
GCAAAAATCCTAGGACTTGC+TGG + chr2.1:74501039-74501058 MS.gene01121:CDS 45.0%
GTTCACCACCAAAGTCTCTT+AGG + chr2.1:74503163-74503182 MS.gene01121:CDS 45.0%
GTTGAAGATGCATTGCAACC+TGG + chr2.1:74502518-74502537 MS.gene01121:CDS 45.0%
TATTTGATGGAGCAAGCAGG+AGG + chr2.1:74503744-74503763 MS.gene01121:CDS 45.0%
TCAAGAATTAGGCCCATAGC+AGG + chr2.1:74503532-74503551 MS.gene01121:intron 45.0%
TCCAAAACTTACTTGGCCGT+TGG - chr2.1:74503014-74503033 None:intergenic 45.0%
TGAGGGAAACGCCAAAAACT+GGG + chr2.1:74502983-74503002 MS.gene01121:CDS 45.0%
TTCACCACTATTTAAGGGGG+AGG + chr2.1:74501924-74501943 MS.gene01121:intron 45.0%
TTGCAGTTTGTGCTTAGCAC+AGG + chr2.1:74502746-74502765 MS.gene01121:intron 45.0%
! AAGTTTGCTTAAACCGGTGG+AGG - chr2.1:74501561-74501580 None:intergenic 45.0%
! ACCAACGGCCAAGTAAGTTT+TGG + chr2.1:74503010-74503029 MS.gene01121:intron 45.0%
! GTGCCTTCTTGTTTCAGAAG+AGG + chr2.1:74502150-74502169 MS.gene01121:intron 45.0%
!! GCTGGATTGGCAAAAATCCT+AGG + chr2.1:74501030-74501049 MS.gene01121:CDS 45.0%
!! TCCTTGCCGACTCAAGAATT+AGG + chr2.1:74503521-74503540 MS.gene01121:intron 45.0%
!! TTTGGTGGTGAACTGTCTTG+TGG - chr2.1:74503156-74503175 None:intergenic 45.0%
!!! CGTTGGTTCATCCCAGTTTT+TGG - chr2.1:74502997-74503016 None:intergenic 45.0%
ATTGCAACCTGGGAGCAGTT+TGG + chr2.1:74502529-74502548 MS.gene01121:CDS 50.0%
GCAGCTGGTTACTGCATGTA+TGG + chr2.1:74502554-74502573 MS.gene01121:CDS 50.0%
GCCTAATTCTTGAGTCGGCA+AGG - chr2.1:74503525-74503544 None:intergenic 50.0%
GGGGGAGGAGCAAAAGAAAT+TGG + chr2.1:74501939-74501958 MS.gene01121:intron 50.0%
GTGAAGGCCTTAATCAGCAG+CGG + chr2.1:74501985-74502004 MS.gene01121:CDS 50.0%
TAGGTCCTCGAACCTGCTAT+GGG - chr2.1:74503547-74503566 None:intergenic 50.0%
TGCTCCTCCCCCTTAAATAG+TGG - chr2.1:74501931-74501950 None:intergenic 50.0%
TTAGGTCCTCGAACCTGCTA+TGG - chr2.1:74503548-74503567 None:intergenic 50.0%
! TGGTGTGTCCGCACATGTTT+TGG - chr2.1:74501517-74501536 None:intergenic 50.0%
GCAGGAGGTCAAGCTTTCAC+AGG + chr2.1:74503759-74503778 MS.gene01121:CDS 55.0%
TGGTGTCTCCAGCAAGTCCT+AGG - chr2.1:74501050-74501069 None:intergenic 55.0%
TTAGGCCCATAGCAGGTTCG+AGG + chr2.1:74503539-74503558 MS.gene01121:intron 55.0%
! TGTGCGTCCGCTGCTGATTA+AGG - chr2.1:74501995-74502014 None:intergenic 55.0%
GCTGCTACCAAACTGCTCCC+AGG - chr2.1:74502539-74502558 None:intergenic 60.0%
! CTGACTTGCCACGCTGTGCT+GGG - chr2.1:74502198-74502217 None:intergenic 60.0%
! GGGAGCAGTTTGGTAGCAGC+TGG + chr2.1:74502539-74502558 MS.gene01121:CDS 60.0%
! TGACTTGCCACGCTGTGCTG+GGG - chr2.1:74502197-74502216 None:intergenic 60.0%
!! ACTGACTTGCCACGCTGTGC+TGG - chr2.1:74502199-74502218 None:intergenic 60.0%
ATTGTGCCCCCAGCACAGCG+TGG + chr2.1:74502187-74502206 MS.gene01121:CDS 65.0%
GACTTGCCACGCTGTGCTGG+GGG - chr2.1:74502196-74502215 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 74500760 74504170 74500760 ID=MS.gene01121
chr2.1 mRNA 74500760 74504170 74500760 ID=MS.gene01121.t1;Parent=MS.gene01121
chr2.1 exon 74500760 74500918 74500760 ID=MS.gene01121.t1.exon1;Parent=MS.gene01121.t1
chr2.1 CDS 74500760 74500918 74500760 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74501030 74501077 74501030 ID=MS.gene01121.t1.exon2;Parent=MS.gene01121.t1
chr2.1 CDS 74501030 74501077 74501030 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74501940 74502014 74501940 ID=MS.gene01121.t1.exon3;Parent=MS.gene01121.t1
chr2.1 CDS 74501940 74502014 74501940 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74502151 74502212 74502151 ID=MS.gene01121.t1.exon4;Parent=MS.gene01121.t1
chr2.1 CDS 74502151 74502212 74502151 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74502304 74502370 74502304 ID=MS.gene01121.t1.exon5;Parent=MS.gene01121.t1
chr2.1 CDS 74502304 74502370 74502304 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74502476 74502589 74502476 ID=MS.gene01121.t1.exon6;Parent=MS.gene01121.t1
chr2.1 CDS 74502476 74502589 74502476 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74502752 74502838 74502752 ID=MS.gene01121.t1.exon7;Parent=MS.gene01121.t1
chr2.1 CDS 74502752 74502838 74502752 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74502951 74503021 74502951 ID=MS.gene01121.t1.exon8;Parent=MS.gene01121.t1
chr2.1 CDS 74502951 74503021 74502951 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74503131 74503196 74503131 ID=MS.gene01121.t1.exon9;Parent=MS.gene01121.t1
chr2.1 CDS 74503131 74503196 74503131 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74503285 74503371 74503285 ID=MS.gene01121.t1.exon10;Parent=MS.gene01121.t1
chr2.1 CDS 74503285 74503371 74503285 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74503716 74503791 74503716 ID=MS.gene01121.t1.exon11;Parent=MS.gene01121.t1
chr2.1 CDS 74503716 74503791 74503716 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
chr2.1 exon 74504054 74504170 74504054 ID=MS.gene01121.t1.exon12;Parent=MS.gene01121.t1
chr2.1 CDS 74504054 74504170 74504054 ID=cds.MS.gene01121.t1;Parent=MS.gene01121.t1
Gene Sequence

>MS.gene01121

ATGGATCACCAAGCAGATGCTAACAGAACTGATTTGATGACAATAACTAGGTTTGTTCTGAATGAGCAATCAAAGTATGCTGAATCACGTGGAGATTTCACCATTCTCATCAATCACATTGTTCTTGGCTGCAAATTTGTTTGTTCTTCTGTTAACAAGGTACACACACACTCTCAAGTCTGAATTCATTTTGATTAGACAAAATTCACAATTACTTTTGTTTTTTATTTTTACCATTAATTGAATGTTTATAATTTTTTTTACTGACAGGCTGGATTGGCAAAAATCCTAGGACTTGCTGGAGACACCAATGTTCAAGTGAGTTTTGTTTTTTTATAATATTTTCCTTTAATTTATAATGTTACGTGTTCATGTTAATATGCGACTTTGTCACACCATCTAAATCTTTTTTGTGTGATAGCGACACCATCTAAATCTGAAATAATATTATGACAAAAAAGACTTTATTTATTTAATATGAGTTTAATGGACATACACTAAACCATTATTTTTACATCAACATCCAACGAGATACCACACTAGTTCCATATCTTAGTACTAATTTCTACTATCCTTATAAAACTGAGTGATGTGTATTGAATTTTCATTGGATTGGATGTTAGTGTACGTAAAACAATTTACACTTGCATGTCCTTTATATCCATGTAATATTATATTTTCAACTGTAACTCTTTTAGTAGTTAAAATTCACATGAATCAATTTTTGTTTATGATGATAATTGCGCAAATACTTCCAAAACATGTGCGGACACACCAATTAGCTTTAAATTCGATTTGCCTCCACCGGTTTAAGCAAACTTGATGTAACAGAGATAAGGAAAAGAGTGAATTCCCTTTAAAATACTTGAATTCCTTGAAGTGAATTACACACTCACTTACAACGTATTGATAGATGAGAGTTTAGTGAATAAAAGTTTCATCAATTACACCTGTGCATTAGAGAAAAGAAAAAATAATTTAGAAATGATTTTCGCATAACTTTAGATCATGAAAGTATGAATTTCATATTGTTTTTCATCCCTTTAAGTGTCTCTATTTCCATAGAAACTTATAATACTTGGTGAAAGAGAAATACTCATCAAATAACATTTCACAAAGTTTCAAGAGGTTGATATAAGTATATGTAACATCCCTATTTTTCTATTCACCACTATTTAAGGGGGAGGAGCAAAAGAAATTGGATGTGATTTCTAATGAAGTATTTGTGAAGGCCTTAATCAGCAGCGGACGCACAGTAAGTCTATACCCTCGAGTTTGCTTTATTTTGTTCTTTTTGTTGGTATACGTTTAAGTTTGATTAATTCATATGCATTTTATTTGGCATTGTTTTGTTCCTGATTTAGTAAAATGCAATTTTTTTGCTTTGGCAGTGCCTTCTTGTTTCAGAAGAGGTTGACGATGCTATCATTGTGCCCCCAGCACAGCGTGGCAAGTCAGTTCCAAAATATTCTATATTTATCAAATCACACATGATCATATTAATATTCATGTGACATTAACAAATTTTCTTTTTGATTTTGAAGATACATAGTTGTGTTTGATCCTTTGGATGGTTCCTCAAACATTGATTGTGGAGTTTCAATAGGAACTGTAAGAATTTTTTCTTTTTTATTTTATCCCAAGCTTGATTGCTATATTTTAAATCATCAAAACAGAAATCATACTAAAATCTAGCATTTTCACTATTGCATATAGATCTTTGGTATTTACACAGTGAAAGATACAACTGAAGTTAGCGTTGAAGATGCATTGCAACCTGGGAGCAGTTTGGTAGCAGCTGGTTACTGCATGTATGGAAGCTCTTGCACGGTAAAACTAGCACCGATTATGCTAATAGAATGTTATGAAGTTTTTCTTTTAACTATTTGATATTTACATTTCACAATTTGCTTTCATTTTTATTATGAAATTGAAATATTTTTCATGTCATAAATACCTGATTCTGATCGAATAAATTGCACGGATTTGCAGTTTGTGCTTAGCACAGGAAATGGAGTGAATGGTTTTACACTTGATCCTTCCCTTGGAGAGTTCATATTGACTCACCCAAACATCAAGGTACATGCATTATGTTGCAGCTAAATTGGTAAATAAATTAACATAAAGTTATTAGGTTTTTACTTAGGCAATTCTGAATTTTATTTTCTGTAACGTGCGTGTTACTTCATAGATACCAAAGAAAGGAAAGATTTATTCTGTGAATGAGGGAAACGCCAAAAACTGGGATGAACCAACGGCCAAGTAAGTTTTGGAAATTCTGTTCTCGAGTACTATTTGAAACCTGATTCTTGAGTTAACATGAAACAATTGAGCTAATTTTCAAATGAATCTTTCGAACTTTGTTTCGTAGATACGTAGAAAATTGCAAGTTTCCACAAGACAGTTCACCACCAAAGTCTCTTAGGTATATTGGCAGGTATATGATTCTGAACTTTATGTAGTTTGATCTTGGTTTTCCTTCAAGTTTCTTCATTTTATTTGCTAACGAAAAATGCACAATACAGTATGGTAGCTGATGTCCATAGAACATTACTATATGGTGGTATATTCATGTACCCTGCTGATAAGAAAAACCCAAATGGAAAGCTAAGGTAAGACTCTGATATACTTTGGTGTGTCTATTTGTAATTAACATTTGATCTAGCATCCTTAGGTCTTAGGAGAGTTAGTAAAATGATTCTCCGATAGAAAAGGAATCTGAATTCTCCTAAGACCTAAGGACATTTTAAAATCGGACATTTCCTTGCCGACTCAAGAATTAGGCCCATAGCAGGTTCGAGGACCTAAATTATTGGGATATGTAGTCCCTTTTGCAATACTCCATACATAGATGAGAACTTGGCGAATTCTTATCTGTTTTAATTGACCGAGTTGTGTTATATGATATGTTTAAACTAATAACTTATGGATATGAAATTTGACTGTAAATTATCAGGGTTCTGTATGAAGTTTTTCCAATGTCATATTTGATGGAGCAAGCAGGAGGTCAAGCTTTCACAGGAAAACAAAGGGTATTACACTTTTTCTTTGCACTATTAGTTTATATTGCTACAAAACTCTTTAGTTGCAACACTTCAATTTGTTACTCTCTCATGCATCTCTGCATCTTCAATATGGTATACTGTATCTAAGTTTAAATAAACACGAATCATACTTTTTTTTTATACTATCATGAATCATACTTTATACCTTATATCAGTTATTTAATCGTTGAATTGGTCATTTGATACTACATCTGATGGATCTCATGTTCATACGATAATTTTTTTGCAGGCACTTGACTTGGTTCCTAAGAAAATACATGATCGATCGCCAATATTCCTTGGAAGCTACGATGAAATTGAGCATATAAAAGAGCTTTATGCAGAATCCAAAGAAAATGGTGCATGA
Protein sequence

>MS.gene01121.t1

MDHQADANRTDLMTITRFVLNEQSKYAESRGDFTILINHIVLGCKFVCSSVNKAGLAKILGLAGDTNVQGEEQKKLDVISNEVFVKALISSGRTCLLVSEEVDDAIIVPPAQRGKYIVVFDPLDGSSNIDCGVSIGTIFGIYTVKDTTEVSVEDALQPGSSLVAAGYCMYGSSCTFVLSTGNGVNGFTLDPSLGEFILTHPNIKIPKKGKIYSVNEGNAKNWDEPTAKYVENCKFPQDSSPPKSLRYIGSMVADVHRTLLYGGIFMYPADKKNPNGKLRVLYEVFPMSYLMEQAGGQAFTGKQRALDLVPKKIHDRSPIFLGSYDEIEHIKELYAESKENGA