Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011228.t1 | AET01618.1 | 82.8 | 261 | 30 | 2 | 1 | 261 | 1 | 246 | 4.90E-101 | 377.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011228.t1 | Q8LDF9 | 57.1 | 154 | 52 | 4 | 145 | 287 | 30 | 180 | 5.2e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011228.t1 | G7LI68 | 82.8 | 261 | 30 | 2 | 1 | 261 | 1 | 246 | 3.5e-101 | 377.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011228.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011228.t1 | MTR_8g018100 | 85.057 | 261 | 24 | 2 | 1 | 261 | 1 | 246 | 4.37e-158 | 442 |
| MS.gene011228.t1 | MTR_1g115220 | 78.307 | 189 | 33 | 2 | 146 | 326 | 22 | 210 | 1.37e-86 | 259 |
| MS.gene011228.t1 | MTR_3g115580 | 52.809 | 89 | 42 | 0 | 208 | 296 | 32 | 120 | 1.87e-21 | 89.4 |
| MS.gene011228.t1 | MTR_5g024180 | 46.237 | 93 | 50 | 0 | 213 | 305 | 28 | 120 | 1.06e-18 | 81.6 |
| MS.gene011228.t1 | MTR_7g068280 | 52.703 | 74 | 35 | 0 | 217 | 290 | 47 | 120 | 8.55e-18 | 80.1 |
| MS.gene011228.t1 | MTR_8g073345 | 38.095 | 105 | 60 | 1 | 205 | 304 | 16 | 120 | 5.48e-15 | 71.2 |
| MS.gene011228.t1 | MTR_8g073345 | 38.095 | 105 | 60 | 1 | 205 | 304 | 16 | 120 | 6.20e-15 | 71.2 |
| MS.gene011228.t1 | MTR_4g094622 | 44.595 | 74 | 41 | 0 | 217 | 290 | 60 | 133 | 1.16e-13 | 68.2 |
| MS.gene011228.t1 | MTR_5g024180 | 41.975 | 81 | 44 | 1 | 228 | 305 | 3 | 83 | 3.81e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011228.t1 | AT5G23420 | 47.059 | 153 | 67 | 4 | 145 | 286 | 30 | 179 | 1.30e-27 | 108 |
| MS.gene011228.t1 | AT4G35570 | 45.833 | 96 | 51 | 1 | 212 | 307 | 25 | 119 | 6.73e-19 | 81.6 |
| MS.gene011228.t1 | AT4G35570 | 45.833 | 96 | 51 | 1 | 212 | 307 | 25 | 119 | 6.73e-19 | 81.6 |
| MS.gene011228.t1 | AT3G51880 | 40.876 | 137 | 75 | 3 | 194 | 326 | 28 | 162 | 1.01e-18 | 82.8 |
| MS.gene011228.t1 | AT3G51880 | 43.878 | 98 | 55 | 0 | 216 | 313 | 48 | 145 | 1.63e-18 | 82.0 |
| MS.gene011228.t1 | AT3G51880 | 43.878 | 98 | 55 | 0 | 216 | 313 | 48 | 145 | 1.63e-18 | 82.0 |
| MS.gene011228.t1 | AT3G51880 | 43.878 | 98 | 55 | 0 | 216 | 313 | 48 | 145 | 1.63e-18 | 82.0 |
| MS.gene011228.t1 | AT3G51880 | 44.944 | 89 | 49 | 0 | 216 | 304 | 48 | 136 | 2.83e-18 | 80.9 |
| MS.gene011228.t1 | AT2G17560 | 43.750 | 96 | 53 | 1 | 208 | 303 | 23 | 117 | 2.78e-17 | 77.4 |
| MS.gene011228.t1 | AT1G20696 | 46.602 | 103 | 53 | 2 | 203 | 304 | 18 | 119 | 3.08e-17 | 77.8 |
| MS.gene011228.t1 | AT2G17560 | 43.750 | 96 | 53 | 1 | 208 | 303 | 23 | 117 | 3.30e-17 | 77.4 |
| MS.gene011228.t1 | AT2G17560 | 43.750 | 96 | 53 | 1 | 208 | 303 | 23 | 117 | 3.30e-17 | 77.4 |
| MS.gene011228.t1 | AT1G20693 | 45.918 | 98 | 51 | 2 | 209 | 304 | 25 | 122 | 5.06e-17 | 77.0 |
| MS.gene011228.t1 | AT1G20693 | 45.918 | 98 | 51 | 2 | 209 | 304 | 25 | 122 | 5.18e-17 | 77.0 |
| MS.gene011228.t1 | AT1G20693 | 46.667 | 105 | 53 | 3 | 203 | 304 | 18 | 122 | 7.54e-17 | 76.6 |
| MS.gene011228.t1 | AT1G20696 | 47.727 | 88 | 45 | 1 | 203 | 290 | 18 | 104 | 3.17e-16 | 74.7 |
| MS.gene011228.t1 | AT1G20696 | 47.727 | 88 | 45 | 1 | 203 | 290 | 18 | 104 | 1.12e-15 | 73.6 |
| MS.gene011228.t1 | AT2G34450 | 37.647 | 85 | 50 | 1 | 222 | 303 | 64 | 148 | 4.09e-11 | 60.8 |
| MS.gene011228.t1 | AT2G34450 | 37.647 | 85 | 50 | 1 | 222 | 303 | 64 | 148 | 4.09e-11 | 60.8 |
| MS.gene011228.t1 | AT2G34450 | 37.647 | 85 | 50 | 1 | 222 | 303 | 64 | 148 | 4.09e-11 | 60.8 |
Find 58 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAACCAACTGCGAAAA+AGG | 0.270737 | 8.2:-76124119 | MS.gene011228:CDS |
| CTAGTTGAATCAAAGCTTCT+TGG | 0.280218 | 8.2:+76124628 | None:intergenic |
| GGGGAAAGCACTGCCATCTT+TGG | 0.286727 | 8.2:+76124596 | None:intergenic |
| AAGCCTCCTGCTGCTGTTCA+AGG | 0.291500 | 8.2:+76124775 | None:intergenic |
| TGTTGACCTTGTTTGCTTCA+AGG | 0.365012 | 8.2:+76125069 | None:intergenic |
| TGTGATGAGCATCATGTTGA+TGG | 0.385983 | 8.2:-76124696 | MS.gene011228:CDS |
| TCTTCAGGATCAGCGTTAAT+CGG | 0.386915 | 8.2:+76125044 | None:intergenic |
| AATCAAAGCTTCTTGGGTAA+TGG | 0.393707 | 8.2:+76124635 | None:intergenic |
| TCTTCCGCCTCTCCTGGTGC+AGG | 0.396540 | 8.2:+76123394 | None:intergenic |
| AAAAGAAGAACGGACCATTT+GGG | 0.398427 | 8.2:+76124576 | None:intergenic |
| TTGCAGATGAGGAGGAGATC+GGG | 0.401132 | 8.2:-76124989 | MS.gene011228:CDS |
| AGCCTCCTGCTGCTGTTCAA+GGG | 0.417728 | 8.2:+76124776 | None:intergenic |
| TTGATTCAAAGGATGTTAAG+AGG | 0.429062 | 8.2:-76123899 | MS.gene011228:CDS |
| GTTAACTCTTCCGCCTCTCC+TGG | 0.437006 | 8.2:+76123388 | None:intergenic |
| CTTCCGCCTCTCCTGGTGCA+GGG | 0.453369 | 8.2:+76123395 | None:intergenic |
| GCCTCCTGCTGCTGTTCAAG+GGG | 0.455833 | 8.2:+76124777 | None:intergenic |
| GGAAGGCCAATCTGATGATA+AGG | 0.467371 | 8.2:-76123422 | MS.gene011228:CDS |
| ATGGCAGTGCTTTCCCCAAA+TGG | 0.470864 | 8.2:-76124590 | MS.gene011228:intron |
| AGAAATTCTGACAAAAGTCT+TGG | 0.471019 | 8.2:-76124673 | MS.gene011228:CDS |
| TAGTTGAATCAAAGCTTCTT+GGG | 0.472291 | 8.2:+76124629 | None:intergenic |
| TCACAAATCTTCTTTGATGC+AGG | 0.473123 | 8.2:+76124714 | None:intergenic |
| GGGCTTCCTTATCATCAGAT+TGG | 0.481597 | 8.2:+76123416 | None:intergenic |
| AGCCCCTGCACCAGGAGAGG+CGG | 0.489136 | 8.2:-76123398 | MS.gene011228:CDS |
| GCCAAAATCAAAAGGAATCT+CGG | 0.491378 | 8.2:-76124399 | MS.gene011228:intron |
| GGATGCTAATCTTGATTCAA+AGG | 0.495931 | 8.2:-76123910 | MS.gene011228:CDS |
| TTTGCAGATGAGGAGGAGAT+CGG | 0.504984 | 8.2:-76124990 | MS.gene011228:CDS |
| GTAAGGAAGATGGCGAGAAG+TGG | 0.513358 | 8.2:-76123774 | MS.gene011228:CDS |
| AACTAGGTTGGTAAGGAAGA+TGG | 0.513485 | 8.2:-76123784 | MS.gene011228:intron |
| AGTTAACAGATGAGGAGTAG+TGG | 0.515594 | 8.2:-76123372 | None:intergenic |
| CTAGCAAAACGTGCCAAAGA+TGG | 0.516871 | 8.2:-76124609 | MS.gene011228:CDS |
| GATAAGGAAGCCCCTGCACC+AGG | 0.518868 | 8.2:-76123406 | MS.gene011228:CDS |
| GCCTTGAAGCCAAAATCAAA+AGG | 0.522896 | 8.2:-76124407 | MS.gene011228:CDS |
| GGATCGGGAGGAATCTGATA+AGG | 0.523228 | 8.2:-76123443 | MS.gene011228:CDS |
| GGAAGCCCCTGCACCAGGAG+AGG | 0.530934 | 8.2:-76123401 | MS.gene011228:CDS |
| TTCCGCCTCTCCTGGTGCAG+GGG | 0.535721 | 8.2:+76123396 | None:intergenic |
| ATGAAGACAAAGAAATCAGT+TGG | 0.551566 | 8.2:+76124043 | None:intergenic |
| GAAGTGGAGGTCTTTGACTG+AGG | 0.557902 | 8.2:-76123758 | MS.gene011228:CDS |
| CCTCCTGCTGCTGTTCAAGG+GGG | 0.558467 | 8.2:+76124778 | None:intergenic |
| TGAAATAGAAGATCCTCGAC+AGG | 0.578069 | 8.2:-76124892 | MS.gene011228:intron |
| AAAGAAGAACGGACCATTTG+GGG | 0.581832 | 8.2:+76124577 | None:intergenic |
| TGATTCAAAGGATGTTAAGA+GGG | 0.586389 | 8.2:-76123898 | MS.gene011228:intron |
| CGGGAGGAATCTGATAAGGA+AGG | 0.587546 | 8.2:-76123439 | MS.gene011228:CDS |
| AAAAGGCTAAAGTTGGGAAA+GGG | 0.594262 | 8.2:-76124102 | MS.gene011228:CDS |
| GGCGGAAGAGTTAACAGATG+AGG | 0.594672 | 8.2:-76123380 | MS.gene011228:CDS |
| AGCAGCATTATACAATTCCA+TGG | 0.595262 | 8.2:+76123573 | None:intergenic |
| AGGAAGATGGCGAGAAGTGG+AGG | 0.598464 | 8.2:-76123771 | MS.gene011228:CDS |
| TGCAGATGAGGAGGAGATCG+GGG | 0.598944 | 8.2:-76124988 | MS.gene011228:CDS |
| CCTCCTCATCTGCAAAACTA+CGG | 0.601020 | 8.2:+76124997 | None:intergenic |
| ATATAAGAGCATACCTGTCG+AGG | 0.602504 | 8.2:+76124879 | None:intergenic |
| CTCCTGCTGCTGTTCAAGGG+GGG | 0.607441 | 8.2:+76124779 | None:intergenic |
| AATGCTCCTTGAAGCAAACA+AGG | 0.617773 | 8.2:-76125075 | MS.gene011228:CDS |
| GGCAGAATATGAGAAGGCCA+TGG | 0.621119 | 8.2:-76123590 | MS.gene011228:CDS |
| AGCCAGACTACACAAAACTC+TGG | 0.634663 | 8.2:-76125106 | MS.gene011228:CDS |
| AAAGTTTAAGGATTCTAATG+CGG | 0.635020 | 8.2:-76124077 | MS.gene011228:CDS |
| TATGTTTGTTCAGGATCGGG+AGG | 0.638946 | 8.2:-76123455 | MS.gene011228:intron |
| ACTCATGGCAGAATATGAGA+AGG | 0.674706 | 8.2:-76123596 | MS.gene011228:CDS |
| GAGATCGGGGAATCTAAATG+TGG | 0.687874 | 8.2:-76124975 | MS.gene011228:CDS |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 8.2:-76124246 | MS.gene011228:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAAAATTACTAATTA+GGG | + | chr8.2:76124144-76124163 | None:intergenic | 10.0% |
| !! | TTTGATAAAAATTACTAATT+AGG | + | chr8.2:76124145-76124164 | None:intergenic | 10.0% |
| !!! | TTTAGGTTTATTTATTTTTT+TGG | - | chr8.2:76124327-76124346 | MS.gene011228:intron | 10.0% |
| !! | AATATTCACAAACTAAAATT+GGG | + | chr8.2:76124286-76124305 | None:intergenic | 15.0% |
| !! | TTGTTTGATTAATTTATCTA+AGG | - | chr8.2:76124654-76124673 | MS.gene011228:CDS | 15.0% |
| !!! | TTATTTTTTTGGAATTTTGT+AGG | - | chr8.2:76124338-76124357 | MS.gene011228:intron | 15.0% |
| !! | AAAATGAAAATAAACAAGCA+CGG | + | chr8.2:76124178-76124197 | None:intergenic | 20.0% |
| !! | ATATTCACAAACTAAAATTG+GGG | + | chr8.2:76124285-76124304 | None:intergenic | 20.0% |
| !! | CAATATTCACAAACTAAAAT+TGG | + | chr8.2:76124287-76124306 | None:intergenic | 20.0% |
| !! | TCAAAAACTTTATCCAAAAA+AGG | + | chr8.2:76124878-76124897 | None:intergenic | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | - | chr8.2:76124844-76124863 | MS.gene011228:intron | 20.0% |
| !!! | AATGAAGTATGTTTTCTTTT+AGG | - | chr8.2:76124953-76124972 | MS.gene011228:CDS | 20.0% |
| !!! | CAATTTTAGTTTGTGAATAT+TGG | - | chr8.2:76124285-76124304 | MS.gene011228:intron | 20.0% |
| !!! | GTTTGTTTCATAATATGTTT+TGG | - | chr8.2:76124983-76125002 | MS.gene011228:CDS | 20.0% |
| !!! | TAGATTTTGACAAAATAGAT+GGG | - | chr8.2:76123562-76123581 | MS.gene011228:CDS | 20.0% |
| ! | AAAAAAGAGAACGAATGAAA+TGG | + | chr8.2:76123949-76123968 | None:intergenic | 25.0% |
| ! | AAAGTTTAAGGATTCTAATG+CGG | - | chr8.2:76124417-76124436 | MS.gene011228:CDS | 25.0% |
| ! | ATCAAAACAGAACAAAACAT+TGG | + | chr8.2:76124776-76124795 | None:intergenic | 25.0% |
| ! | ATTTCTTTGTCTTCATGTAA+GGG | - | chr8.2:76124458-76124477 | MS.gene011228:intron | 25.0% |
| ! | TTAGATGTATTGCAAAAACT+AGG | - | chr8.2:76124694-76124713 | MS.gene011228:CDS | 25.0% |
| ! | TTGTTTAGTTGAATTGTGTT+TGG | - | chr8.2:76124629-76124648 | MS.gene011228:CDS | 25.0% |
| !! | AGTATTTTCTTTTCTTCTTC+AGG | + | chr8.2:76123468-76123487 | None:intergenic | 25.0% |
| !! | TGAGTTTAGAAAGACTTTTA+AGG | - | chr8.2:76124563-76124582 | MS.gene011228:intron | 25.0% |
| !!! | AGATTTTGACAAAATAGATG+GGG | - | chr8.2:76123563-76123582 | MS.gene011228:CDS | 25.0% |
| !!! | ATGTTTTGTTCTGTTTTGAT+TGG | - | chr8.2:76124776-76124795 | MS.gene011228:CDS | 25.0% |
| !!! | GTAGATTTTGACAAAATAGA+TGG | - | chr8.2:76123561-76123580 | MS.gene011228:CDS | 25.0% |
| !!! | TCTGGTTTTTGTTAGTATTT+AGG | - | chr8.2:76124310-76124329 | MS.gene011228:intron | 25.0% |
| !!! | TTGTAATGTTTTGGTTCTAT+AGG | - | chr8.2:76124501-76124520 | MS.gene011228:intron | 25.0% |
| AATGGTGTAGAAAAGAAGAA+CGG | + | chr8.2:76123931-76123950 | None:intergenic | 30.0% | |
| AGAAATTCTGACAAAAGTCT+TGG | - | chr8.2:76123821-76123840 | MS.gene011228:intron | 30.0% | |
| ATGAAGACAAAGAAATCAGT+TGG | + | chr8.2:76124454-76124473 | None:intergenic | 30.0% | |
| ATGTATTGCAAAAACTAGGT+TGG | - | chr8.2:76124698-76124717 | MS.gene011228:CDS | 30.0% | |
| GATTTCTTTGTCTTCATGTA+AGG | - | chr8.2:76124457-76124476 | MS.gene011228:intron | 30.0% | |
| TAGTTGAATCAAAGCTTCTT+GGG | + | chr8.2:76123868-76123887 | None:intergenic | 30.0% | |
| TGATTCAAAGGATGTTAAGA+GGG | - | chr8.2:76124596-76124615 | MS.gene011228:CDS | 30.0% | |
| TTGATTCAAAGGATGTTAAG+AGG | - | chr8.2:76124595-76124614 | MS.gene011228:CDS | 30.0% | |
| TTGTTTATAATCGAAGATGC+CGG | - | chr8.2:76123692-76123711 | MS.gene011228:intron | 30.0% | |
| TTTATGTGATGCTGATCTAA+TGG | - | chr8.2:76124819-76124838 | MS.gene011228:intron | 30.0% | |
| ! | GGATAAAGTTTTTGAACTCA+TGG | - | chr8.2:76124883-76124902 | MS.gene011228:intron | 30.0% |
| !!! | TGTGCTGTTTTGTAATGTTT+TGG | - | chr8.2:76124492-76124511 | MS.gene011228:intron | 30.0% |
| !!! | TGTTCTGTTTTGATTGGATT+TGG | - | chr8.2:76124782-76124801 | MS.gene011228:CDS | 30.0% |
| AAAAAGGCTAAAGTTGGGAA+AGG | - | chr8.2:76124391-76124410 | MS.gene011228:intron | 35.0% | |
| AAAAGAACCAACTGCGAAAA+AGG | - | chr8.2:76124375-76124394 | MS.gene011228:intron | 35.0% | |
| AAAAGAAGAACGGACCATTT+GGG | + | chr8.2:76123921-76123940 | None:intergenic | 35.0% | |
| AAAAGGCTAAAGTTGGGAAA+GGG | - | chr8.2:76124392-76124411 | MS.gene011228:intron | 35.0% | |
| AATCAAAGCTTCTTGGGTAA+TGG | + | chr8.2:76123862-76123881 | None:intergenic | 35.0% | |
| AGCAGCATTATACAATTCCA+TGG | + | chr8.2:76124924-76124943 | None:intergenic | 35.0% | |
| AGTTTGTGAATATTGGACTC+TGG | - | chr8.2:76124292-76124311 | MS.gene011228:intron | 35.0% | |
| CTAGTTGAATCAAAGCTTCT+TGG | + | chr8.2:76123869-76123888 | None:intergenic | 35.0% | |
| CTATATGTTTGTTCAGGATC+GGG | - | chr8.2:76125036-76125055 | MS.gene011228:CDS | 35.0% | |
| GCCAAAATCAAAAGGAATCT+CGG | - | chr8.2:76124095-76124114 | MS.gene011228:CDS | 35.0% | |
| GCTATATGTTTGTTCAGGAT+CGG | - | chr8.2:76125035-76125054 | MS.gene011228:CDS | 35.0% | |
| GCTGATCTAATGGTATGATA+TGG | - | chr8.2:76124829-76124848 | MS.gene011228:intron | 35.0% | |
| GGATGCTAATCTTGATTCAA+AGG | - | chr8.2:76124584-76124603 | MS.gene011228:intron | 35.0% | |
| TCACAAATCTTCTTTGATGC+AGG | + | chr8.2:76123783-76123802 | None:intergenic | 35.0% | |
| TGGGAAAGGGAAAAAGTTTA+AGG | - | chr8.2:76124405-76124424 | MS.gene011228:CDS | 35.0% | |
| !! | GATTGGTTTGATTTGTTGCA+GGG | - | chr8.2:76124539-76124558 | MS.gene011228:intron | 35.0% |
| !! | GCAGTTGGTTCTTTTGAATT+TGG | + | chr8.2:76124370-76124389 | None:intergenic | 35.0% |
| !! | TGATTGGTTTGATTTGTTGC+AGG | - | chr8.2:76124538-76124557 | MS.gene011228:intron | 35.0% |
| !! | TTGCAAAAACTAGGTTGGTA+AGG | - | chr8.2:76124703-76124722 | MS.gene011228:CDS | 35.0% |
| !!! | ACCGAGATTCCTTTTGATTT+TGG | + | chr8.2:76124099-76124118 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTCTATAGGTTGA+GGG | - | chr8.2:76124508-76124527 | MS.gene011228:intron | 35.0% |
| !!! | TCCTTTTGATTTTGGCTTCA+AGG | + | chr8.2:76124091-76124110 | None:intergenic | 35.0% |
| !!! | TGTTTTGGTTCTATAGGTTG+AGG | - | chr8.2:76124507-76124526 | MS.gene011228:intron | 35.0% |
| !!! | TTAGGAGAAGATGCCTTTTT+TGG | - | chr8.2:76124862-76124881 | MS.gene011228:intron | 35.0% |
| AAAGAAGAACGGACCATTTG+GGG | + | chr8.2:76123920-76123939 | None:intergenic | 40.0% | |
| AATGCTCCTTGAAGCAAACA+AGG | - | chr8.2:76123419-76123438 | MS.gene011228:CDS | 40.0% | |
| ACTCATGGCAGAATATGAGA+AGG | - | chr8.2:76124898-76124917 | MS.gene011228:CDS | 40.0% | |
| ACTGCGAAAAAGGCTAAAGT+TGG | - | chr8.2:76124385-76124404 | MS.gene011228:intron | 40.0% | |
| CTGCGAAAAAGGCTAAAGTT+GGG | - | chr8.2:76124386-76124405 | MS.gene011228:intron | 40.0% | |
| GAAAAGAAGAACGGACCATT+TGG | + | chr8.2:76123922-76123941 | None:intergenic | 40.0% | |
| GCCTTGAAGCCAAAATCAAA+AGG | - | chr8.2:76124087-76124106 | MS.gene011228:CDS | 40.0% | |
| GGGAAAAAATTTCACCTCTC+GGG | + | chr8.2:76124265-76124284 | None:intergenic | 40.0% | |
| GGGGAAAAAATTTCACCTCT+CGG | + | chr8.2:76124266-76124285 | None:intergenic | 40.0% | |
| TCTTCAGGATCAGCGTTAAT+CGG | + | chr8.2:76123453-76123472 | None:intergenic | 40.0% | |
| TGAAATAGAAGATCCTCGAC+AGG | - | chr8.2:76123602-76123621 | MS.gene011228:CDS | 40.0% | |
| TGTGATGAGCATCATGTTGA+TGG | - | chr8.2:76123798-76123817 | MS.gene011228:intron | 40.0% | |
| ! | ATATAAGAGCATACCTGTCG+AGG | + | chr8.2:76123618-76123637 | None:intergenic | 40.0% |
| ! | TGTTGACCTTGTTTGCTTCA+AGG | + | chr8.2:76123428-76123447 | None:intergenic | 40.0% |
| !! | AACTAGGTTGGTAAGGAAGA+TGG | - | chr8.2:76124710-76124729 | MS.gene011228:CDS | 40.0% |
| !! | ACTTTAGCCTTTTTCGCAGT+TGG | + | chr8.2:76124385-76124404 | None:intergenic | 40.0% |
| !! | CTGGTGCTATATGTTTGTTC+AGG | - | chr8.2:76125030-76125049 | MS.gene011228:CDS | 40.0% |
| !! | TAACCGTAGTTTTGCAGATG+AGG | - | chr8.2:76123494-76123513 | MS.gene011228:intron | 40.0% |
| !!! | GGTTGAGGGTTTTAGTTGAT+TGG | - | chr8.2:76124522-76124541 | MS.gene011228:intron | 40.0% |
| !!! | TTTGCTCTCTTTTCTGAAGC+TGG | - | chr8.2:76125011-76125030 | MS.gene011228:CDS | 40.0% |
| AGCCAGACTACACAAAACTC+TGG | - | chr8.2:76123388-76123407 | MS.gene011228:CDS | 45.0% | |
| CCTCCTCATCTGCAAAACTA+CGG | + | chr8.2:76123500-76123519 | None:intergenic | 45.0% | |
| CTAGCAAAACGTGCCAAAGA+TGG | - | chr8.2:76123885-76123904 | MS.gene011228:intron | 45.0% | |
| GAGATCGGGGAATCTAAATG+TGG | - | chr8.2:76123519-76123538 | MS.gene011228:intron | 45.0% | |
| GGAAGGCCAATCTGATGATA+AGG | - | chr8.2:76125072-76125091 | MS.gene011228:CDS | 45.0% | |
| GGGCTTCCTTATCATCAGAT+TGG | + | chr8.2:76125081-76125100 | None:intergenic | 45.0% | |
| TATGTTTGTTCAGGATCGGG+AGG | - | chr8.2:76125039-76125058 | MS.gene011228:CDS | 45.0% | |
| TTTGCAGATGAGGAGGAGAT+CGG | - | chr8.2:76123504-76123523 | MS.gene011228:intron | 45.0% | |
| !! | GTCCAGAGTTTTGTGTAGTC+TGG | + | chr8.2:76123393-76123412 | None:intergenic | 45.0% |
| !!! | ATTTTTGATTTTATTTAATT+TGG | - | chr8.2:76124193-76124212 | MS.gene011228:intron | 5.0% |
| ATGGCAGTGCTTTCCCCAAA+TGG | - | chr8.2:76123904-76123923 | MS.gene011228:CDS | 50.0% | |
| CGGGAGGAATCTGATAAGGA+AGG | - | chr8.2:76125055-76125074 | MS.gene011228:CDS | 50.0% | |
| CTGAAGTGAAGAAACCCGAG+AGG | - | chr8.2:76124248-76124267 | MS.gene011228:CDS | 50.0% | |
| GAAGTGGAGGTCTTTGACTG+AGG | - | chr8.2:76124736-76124755 | MS.gene011228:CDS | 50.0% | |
| GGATCGGGAGGAATCTGATA+AGG | - | chr8.2:76125051-76125070 | MS.gene011228:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | - | chr8.2:76124904-76124923 | MS.gene011228:CDS | 50.0% | |
| GGCGGAAGAGTTAACAGATG+AGG | - | chr8.2:76125114-76125133 | MS.gene011228:CDS | 50.0% | |
| GTAAGGAAGATGGCGAGAAG+TGG | - | chr8.2:76124720-76124739 | MS.gene011228:CDS | 50.0% | |
| TTGCAGATGAGGAGGAGATC+GGG | - | chr8.2:76123505-76123524 | MS.gene011228:intron | 50.0% | |
| !! | CCGTAGTTTTGCAGATGAGG+AGG | - | chr8.2:76123497-76123516 | MS.gene011228:intron | 50.0% |
| AAGCCTCCTGCTGCTGTTCA+AGG | + | chr8.2:76123722-76123741 | None:intergenic | 55.0% | |
| AGCCTCCTGCTGCTGTTCAA+GGG | + | chr8.2:76123721-76123740 | None:intergenic | 55.0% | |
| AGGAAGATGGCGAGAAGTGG+AGG | - | chr8.2:76124723-76124742 | MS.gene011228:CDS | 55.0% | |
| GTTAACTCTTCCGCCTCTCC+TGG | + | chr8.2:76125109-76125128 | None:intergenic | 55.0% | |
| TGCAGATGAGGAGGAGATCG+GGG | - | chr8.2:76123506-76123525 | MS.gene011228:intron | 55.0% | |
| !! | GGGGAAAGCACTGCCATCTT+TGG | + | chr8.2:76123901-76123920 | None:intergenic | 55.0% |
| CCTCCTGCTGCTGTTCAAGG+GGG | + | chr8.2:76123719-76123738 | None:intergenic | 60.0% | |
| CTCCTGCTGCTGTTCAAGGG+GGG | + | chr8.2:76123718-76123737 | None:intergenic | 60.0% | |
| GATAAGGAAGCCCCTGCACC+AGG | - | chr8.2:76125088-76125107 | MS.gene011228:CDS | 60.0% | |
| GCCTCCTGCTGCTGTTCAAG+GGG | + | chr8.2:76123720-76123739 | None:intergenic | 60.0% | |
| CCCCCTTGAACAGCAGCAGG+AGG | - | chr8.2:76123716-76123735 | MS.gene011228:intron | 65.0% | |
| CTTCCGCCTCTCCTGGTGCA+GGG | + | chr8.2:76125102-76125121 | None:intergenic | 65.0% | |
| TCTTCCGCCTCTCCTGGTGC+AGG | + | chr8.2:76125103-76125122 | None:intergenic | 65.0% | |
| TGCTGCTGTTCAAGGGGGGC+CGG | + | chr8.2:76123714-76123733 | None:intergenic | 65.0% | |
| TTCCGCCTCTCCTGGTGCAG+GGG | + | chr8.2:76125101-76125120 | None:intergenic | 65.0% | |
| AGCCCCTGCACCAGGAGAGG+CGG | - | chr8.2:76125096-76125115 | MS.gene011228:CDS | 70.0% | |
| GGAAGCCCCTGCACCAGGAG+AGG | - | chr8.2:76125093-76125112 | MS.gene011228:CDS | 70.0% | |
| GGCCCCCCTTGAACAGCAGC+AGG | - | chr8.2:76123713-76123732 | MS.gene011228:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 76123375 | 76125141 | 76123375 | ID=MS.gene011228 |
| chr8.2 | mRNA | 76123375 | 76125141 | 76123375 | ID=MS.gene011228.t1;Parent=MS.gene011228 |
| chr8.2 | exon | 76124893 | 76125141 | 76124893 | ID=MS.gene011228.t1.exon1;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76124893 | 76125141 | 76124893 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76124591 | 76124808 | 76124591 | ID=MS.gene011228.t1.exon2;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76124591 | 76124808 | 76124591 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76124400 | 76124467 | 76124400 | ID=MS.gene011228.t1.exon3;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76124400 | 76124467 | 76124400 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76124247 | 76124292 | 76124247 | ID=MS.gene011228.t1.exon4;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76124247 | 76124292 | 76124247 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76124043 | 76124156 | 76124043 | ID=MS.gene011228.t1.exon5;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76124043 | 76124156 | 76124043 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76123899 | 76123956 | 76123899 | ID=MS.gene011228.t1.exon6;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76123899 | 76123956 | 76123899 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76123756 | 76123800 | 76123756 | ID=MS.gene011228.t1.exon7;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76123756 | 76123800 | 76123756 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76123558 | 76123650 | 76123558 | ID=MS.gene011228.t1.exon8;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76123558 | 76123650 | 76123558 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| chr8.2 | exon | 76123375 | 76123464 | 76123375 | ID=MS.gene011228.t1.exon9;Parent=MS.gene011228.t1 |
| chr8.2 | CDS | 76123375 | 76123464 | 76123375 | ID=cds.MS.gene011228.t1;Parent=MS.gene011228.t1 |
| Gene Sequence |
| Protein sequence |
