Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011283.t1 | XP_013444421.1 | 99.2 | 256 | 2 | 0 | 1 | 256 | 1 | 256 | 1.70E-117 | 432.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011283.t1 | O81488 | 85.5 | 255 | 36 | 1 | 1 | 255 | 1 | 254 | 1.5e-98 | 360.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011283.t1 | A0FK62 | 99.2 | 256 | 2 | 0 | 1 | 256 | 1 | 256 | 1.2e-117 | 432.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011283.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011283.t1 | MTR_8g019520 | 99.219 | 256 | 2 | 0 | 1 | 256 | 1 | 256 | 0.0 | 531 |
| MS.gene011283.t1 | MTR_8g019520 | 98.833 | 257 | 2 | 1 | 1 | 256 | 1 | 257 | 0.0 | 526 |
| MS.gene011283.t1 | MTR_2g099500 | 79.675 | 246 | 49 | 1 | 10 | 255 | 6 | 250 | 5.46e-122 | 348 |
| MS.gene011283.t1 | MTR_2g040990 | 72.441 | 254 | 60 | 3 | 5 | 256 | 8 | 253 | 1.08e-121 | 347 |
| MS.gene011283.t1 | MTR_1g015185 | 74.517 | 259 | 54 | 3 | 7 | 256 | 8 | 263 | 2.36e-120 | 344 |
| MS.gene011283.t1 | MTR_4g134510 | 73.361 | 244 | 64 | 1 | 9 | 252 | 10 | 252 | 1.59e-117 | 337 |
| MS.gene011283.t1 | MTR_4g015830 | 63.454 | 249 | 77 | 7 | 8 | 256 | 6 | 240 | 3.60e-94 | 277 |
| MS.gene011283.t1 | MTR_7g068590 | 61.044 | 249 | 85 | 7 | 8 | 256 | 6 | 242 | 5.92e-91 | 269 |
| MS.gene011283.t1 | MTR_1g015185 | 87.413 | 143 | 18 | 0 | 7 | 149 | 8 | 150 | 5.81e-82 | 244 |
| MS.gene011283.t1 | MTR_8g066480 | 55.797 | 138 | 40 | 6 | 120 | 256 | 29 | 146 | 9.97e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011283.t1 | AT5G20510 | 71.765 | 255 | 67 | 2 | 6 | 256 | 7 | 260 | 3.99e-123 | 351 |
| MS.gene011283.t1 | AT3G42790 | 73.494 | 249 | 59 | 4 | 7 | 255 | 8 | 249 | 1.06e-120 | 344 |
| MS.gene011283.t1 | AT2G02470 | 68.846 | 260 | 73 | 5 | 1 | 256 | 1 | 256 | 7.38e-109 | 315 |
| MS.gene011283.t1 | AT2G02470 | 68.359 | 256 | 72 | 4 | 1 | 256 | 1 | 247 | 2.15e-108 | 313 |
| MS.gene011283.t1 | AT1G14510 | 68.421 | 247 | 74 | 3 | 9 | 255 | 9 | 251 | 9.28e-108 | 311 |
| MS.gene011283.t1 | AT5G26210 | 71.103 | 263 | 59 | 3 | 1 | 255 | 1 | 254 | 6.35e-103 | 300 |
| MS.gene011283.t1 | AT5G05610 | 64.082 | 245 | 75 | 5 | 8 | 252 | 7 | 238 | 5.71e-98 | 286 |
| MS.gene011283.t1 | AT5G05610 | 64.082 | 245 | 75 | 5 | 8 | 252 | 7 | 238 | 5.71e-98 | 286 |
| MS.gene011283.t1 | AT5G20510 | 70.046 | 217 | 60 | 2 | 44 | 256 | 4 | 219 | 9.65e-97 | 283 |
| MS.gene011283.t1 | AT3G11200 | 63.600 | 250 | 81 | 5 | 3 | 252 | 4 | 243 | 4.18e-94 | 277 |
| MS.gene011283.t1 | AT5G20510 | 75.472 | 159 | 39 | 0 | 6 | 164 | 7 | 165 | 2.28e-82 | 245 |
| MS.gene011283.t1 | AT3G11200 | 62.673 | 217 | 71 | 5 | 36 | 252 | 24 | 230 | 3.73e-78 | 236 |
| MS.gene011283.t1 | AT2G02470 | 74.051 | 158 | 40 | 1 | 1 | 158 | 1 | 157 | 4.00e-71 | 219 |
Find 69 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCTTAACCTGAGGTTC+TGG | 0.298478 | 8.2:-75057771 | None:intergenic |
| TCAATATTTGAAGTTGTTAC+TGG | 0.306554 | 8.2:+75056857 | MS.gene011283:CDS |
| TACTACTTTGGTGCCAGATT+TGG | 0.319173 | 8.2:+75056667 | MS.gene011283:CDS |
| TGCTTGGCATTAACTTTGCC+AGG | 0.326435 | 8.2:+75056572 | MS.gene011283:CDS |
| AGAGAAAGACTGGCTATCTT+TGG | 0.329748 | 8.2:+75056606 | MS.gene011283:CDS |
| TCCTCCACCTCATCATCTTT+AGG | 0.341682 | 8.2:-75057810 | None:intergenic |
| AGATGATGAGGTGGAGGAAC+TGG | 0.383921 | 8.2:+75057815 | MS.gene011283:CDS |
| AGCACAGGCTCGGGAAGCTC+TGG | 0.385581 | 8.2:-75056553 | None:intergenic |
| TACCGCTTTCGAGCTGGACT+TGG | 0.388039 | 8.2:-75056939 | None:intergenic |
| GATCATTGATCATGCTGAAC+AGG | 0.389888 | 8.2:-75056829 | None:intergenic |
| ATTATGGCACTGATGAATTC+TGG | 0.392260 | 8.2:+75057892 | MS.gene011283:CDS |
| AGATTTGTCGAAGCCAAATC+TGG | 0.397894 | 8.2:-75056680 | None:intergenic |
| GGCATTAACTTTGCCAGGGA+TGG | 0.411593 | 8.2:+75056577 | MS.gene011283:CDS |
| GAGCTTCCCGAGCCTGTGCT+TGG | 0.413554 | 8.2:+75056556 | MS.gene011283:CDS |
| TTGATATGCTCAGCCCTAGC+AGG | 0.419284 | 8.2:-75057969 | None:intergenic |
| TTTCTCTTGCATGCCATCCC+TGG | 0.429424 | 8.2:-75056590 | None:intergenic |
| AAGGAGAACCTGTGCTTGTA+TGG | 0.431624 | 8.2:+75056481 | MS.gene011283:CDS |
| TTGCTGTTCACAGTGATTCA+TGG | 0.433165 | 8.2:+75056629 | MS.gene011283:CDS |
| GGTGCATGCGGTGAGCATTA+TGG | 0.433315 | 8.2:+75057876 | MS.gene011283:CDS |
| ATCGCCATTGCGTACTACTT+TGG | 0.461307 | 8.2:+75056655 | MS.gene011283:CDS |
| TTGACTTCCCACTGCTCACT+AGG | 0.465024 | 8.2:-75056508 | None:intergenic |
| TTCTATACCCAATGTGATCC+AGG | 0.468704 | 8.2:+75055917 | MS.gene011283:CDS |
| ATTATTTACCGCTTTCGAGC+TGG | 0.469549 | 8.2:-75056945 | None:intergenic |
| CTCTTATTGTTACTGCATGA+TGG | 0.471278 | 8.2:-75058005 | None:intergenic |
| TAACTTACCTGGATCACATT+GGG | 0.490957 | 8.2:-75055924 | None:intergenic |
| CTCACCGCATGCACCACATA+AGG | 0.495356 | 8.2:-75057868 | None:intergenic |
| GTAACAACTTCAAATATTGA+TGG | 0.502359 | 8.2:-75056854 | None:intergenic |
| GTTAATGCCAAGCACAGGCT+CGG | 0.508894 | 8.2:-75056563 | None:intergenic |
| GGCTTTGTCTGCTTAACCTG+AGG | 0.513964 | 8.2:-75057777 | None:intergenic |
| TGATATGCTCAGCCCTAGCA+GGG | 0.516021 | 8.2:-75057968 | None:intergenic |
| GTGTGAAGATCACCCCTGCT+AGG | 0.516439 | 8.2:+75057955 | MS.gene011283:CDS |
| GCAGCGGGCTCCAGAACCTC+AGG | 0.519888 | 8.2:+75057761 | MS.gene011283:intron |
| CTCATCAAAGCTCTCACCAC+TGG | 0.525319 | 8.2:+75054403 | MS.gene011283:CDS |
| ATGGCATGCAAGAGAAAGAC+TGG | 0.534454 | 8.2:+75056596 | MS.gene011283:CDS |
| ATTTGTGAGAAGTGGTTCCA+TGG | 0.538919 | 8.2:+75057927 | MS.gene011283:CDS |
| TCTGGCGGAACTTCCTCAGC+AGG | 0.540129 | 8.2:-75056535 | None:intergenic |
| ACAGGCTCGGGAAGCTCTGG+CGG | 0.540889 | 8.2:-75056550 | None:intergenic |
| ACCTAAAGATGATGAGGTGG+AGG | 0.542306 | 8.2:+75057809 | MS.gene011283:CDS |
| TTAATGCCAAGCACAGGCTC+GGG | 0.544159 | 8.2:-75056562 | None:intergenic |
| GCTGTGACATTTGTGAGAAG+TGG | 0.553820 | 8.2:+75057919 | MS.gene011283:CDS |
| GGTTAAGCAGACAAAGCCAT+TGG | 0.555690 | 8.2:+75057782 | MS.gene011283:CDS |
| AAAACTTCCTCAACGGTGCG+TGG | 0.559807 | 8.2:-75054352 | None:intergenic |
| TGACTTCCCACTGCTCACTA+GGG | 0.569521 | 8.2:-75056507 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.574011 | 8.2:-75057944 | None:intergenic |
| ATCTCTGAAAACTTCCTCAA+CGG | 0.574665 | 8.2:-75054359 | None:intergenic |
| TGGCTTCCCTAGTGAGCAGT+GGG | 0.576162 | 8.2:+75056501 | MS.gene011283:CDS |
| GGAAGTCAATTTACCTGCTG+AGG | 0.576632 | 8.2:+75056522 | MS.gene011283:CDS |
| TGAGGTGGAGGAACTGGACG+AGG | 0.577577 | 8.2:+75057821 | MS.gene011283:CDS |
| GCAAAGTTAATGCCAAGCAC+AGG | 0.578595 | 8.2:-75056568 | None:intergenic |
| ATCCAAGTCCAGCTCGAAAG+CGG | 0.582695 | 8.2:+75056937 | MS.gene011283:CDS |
| TAGGGAAGCCATACAAGCAC+AGG | 0.583243 | 8.2:-75056489 | None:intergenic |
| TTGGCTTCGACAAATCTGAC+AGG | 0.592431 | 8.2:+75056686 | MS.gene011283:CDS |
| TCATCTTTAGGTAACTCCAA+TGG | 0.594683 | 8.2:-75057798 | None:intergenic |
| TTTGTGAGAAGTGGTTCCAT+GGG | 0.598485 | 8.2:+75057928 | MS.gene011283:CDS |
| TGTGAAGATCACCCCTGCTA+GGG | 0.600442 | 8.2:+75057956 | MS.gene011283:CDS |
| GTAACTTACCTGGATCACAT+TGG | 0.608170 | 8.2:-75055925 | None:intergenic |
| GCTTGGCATTAACTTTGCCA+GGG | 0.610233 | 8.2:+75056573 | MS.gene011283:CDS |
| GGAGTTACCTAAAGATGATG+AGG | 0.622708 | 8.2:+75057803 | MS.gene011283:CDS |
| GTATAATCCACGCACCGTTG+AGG | 0.643429 | 8.2:+75054345 | MS.gene011283:CDS |
| GGCACCAAAGTAGTACGCAA+TGG | 0.648228 | 8.2:-75056659 | None:intergenic |
| ATGGCTTCCCTAGTGAGCAG+TGG | 0.650269 | 8.2:+75056500 | MS.gene011283:CDS |
| GAACATGGAGAGACCTTATG+TGG | 0.650525 | 8.2:+75057855 | MS.gene011283:CDS |
| ACTTGGATTTGCTGCCACTG+TGG | 0.654768 | 8.2:-75056922 | None:intergenic |
| TGCAGCAAAGAAACAAGTCA+AGG | 0.656590 | 8.2:+75056880 | MS.gene011283:CDS |
| GTTACCTAAAGATGATGAGG+TGG | 0.657704 | 8.2:+75057806 | MS.gene011283:CDS |
| GAGGAAGATGAAGATGAACA+TGG | 0.668055 | 8.2:+75057840 | MS.gene011283:CDS |
| GATATGCTCAGCCCTAGCAG+GGG | 0.690376 | 8.2:-75057967 | None:intergenic |
| GAGACCTTATGTGGTGCATG+CGG | 0.712511 | 8.2:+75057864 | MS.gene011283:CDS |
| TCTTCAGTTTCAAACCACAG+TGG | 0.768394 | 8.2:+75056908 | MS.gene011283:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATGGTTTTTTTTTA+AGG | - | chr8.2:75054442-75054461 | None:intergenic | 10.0% |
| !!! | AAATTTTCAAATTCATTTTT+TGG | + | chr8.2:75054481-75054500 | MS.gene011283:intron | 10.0% |
| !!! | ATATTTAATTTTCAAATTCA+TGG | + | chr8.2:75057556-75057575 | MS.gene011283:intron | 10.0% |
| !!! | ATTTTTCAATTTTACTTAAT+GGG | + | chr8.2:75054757-75054776 | MS.gene011283:intron | 10.0% |
| !!! | TATTTTTCAATTTTACTTAA+TGG | + | chr8.2:75054756-75054775 | MS.gene011283:intron | 10.0% |
| !! | ATACTTGTTTATGAATATTA+GGG | - | chr8.2:75056046-75056065 | None:intergenic | 15.0% |
| !! | ATTTAAATATTCCAAATCAT+GGG | - | chr8.2:75057120-75057139 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTTATAATATTAG+CGG | + | chr8.2:75054625-75054644 | MS.gene011283:intron | 15.0% |
| !!! | TTATATATTTTTTTTACCAC+CGG | + | chr8.2:75055003-75055022 | MS.gene011283:intron | 15.0% |
| !!! | TTTTGATTTTTGTGAAAAAA+TGG | + | chr8.2:75056131-75056150 | MS.gene011283:intron | 15.0% |
| !! | AAGTTCAAAAAAAAATTGCA+AGG | - | chr8.2:75054897-75054916 | None:intergenic | 20.0% |
| !! | ATGAAAAATATTGTTTGCAA+TGG | + | chr8.2:75057389-75057408 | MS.gene011283:intron | 20.0% |
| !! | CATTTAAATATTCCAAATCA+TGG | - | chr8.2:75057121-75057140 | None:intergenic | 20.0% |
| !! | GAAAAAAGGAACAAAAAAAA+TGG | - | chr8.2:75054455-75054474 | None:intergenic | 20.0% |
| !! | GATACTTGTTTATGAATATT+AGG | - | chr8.2:75056047-75056066 | None:intergenic | 20.0% |
| !! | TTGAATATATATACTGAAGA+AGG | - | chr8.2:75056190-75056209 | None:intergenic | 20.0% |
| !! | TTGAATTGTGTAATAATTCA+CGG | + | chr8.2:75055223-75055242 | MS.gene011283:intron | 20.0% |
| !! | TTTAAATTGAGTATTTGAGA+TGG | + | chr8.2:75054869-75054888 | MS.gene011283:intron | 20.0% |
| !! | TTTCAAATTCATGGTTTAAA+TGG | + | chr8.2:75057565-75057584 | MS.gene011283:intron | 20.0% |
| !!! | AAACTATATTAGTTTCATCA+AGG | + | chr8.2:75056242-75056261 | MS.gene011283:intron | 20.0% |
| !!! | AATTTAGCTAGATTTGAAAT+GGG | + | chr8.2:75055110-75055129 | MS.gene011283:intron | 20.0% |
| !!! | AGTATCGAAAATGAATTATT+AGG | - | chr8.2:75055754-75055773 | None:intergenic | 20.0% |
| !!! | GAAAATTTCGATTTGAAAAA+AGG | - | chr8.2:75054469-75054488 | None:intergenic | 20.0% |
| !!! | GTTTTTCAATTTTACTTGAT+GGG | + | chr8.2:75054550-75054569 | MS.gene011283:intron | 20.0% |
| !!! | TAGAACTCTTGTTTATATTA+GGG | + | chr8.2:75057037-75057056 | MS.gene011283:intron | 20.0% |
| !!! | TGTTTTTCAATTTTACTTGA+TGG | + | chr8.2:75054549-75054568 | MS.gene011283:intron | 20.0% |
| !!! | TTTCTCATCTAATTTTTGAA+TGG | + | chr8.2:75057734-75057753 | MS.gene011283:intron | 20.0% |
| !!! | TTTTACAAGTGTTTTTAATG+TGG | + | chr8.2:75055146-75055165 | MS.gene011283:intron | 20.0% |
| ! | AGCTAGTTAGTTAATTATCT+GGG | + | chr8.2:75057086-75057105 | MS.gene011283:intron | 25.0% |
| ! | AGTTAAATCTGGTATCATAT+TGG | + | chr8.2:75057212-75057231 | MS.gene011283:intron | 25.0% |
| ! | ATTCAAATTAATCTTACACG+AGG | + | chr8.2:75056204-75056223 | MS.gene011283:intron | 25.0% |
| ! | ATTTGAACTAAAACTACCAT+AGG | + | chr8.2:75055297-75055316 | MS.gene011283:intron | 25.0% |
| ! | CAATTTAGCTAGATTTGAAA+TGG | + | chr8.2:75055109-75055128 | MS.gene011283:intron | 25.0% |
| ! | GGTTAAGTTATCATATGTAT+CGG | + | chr8.2:75056741-75056760 | MS.gene011283:intron | 25.0% |
| ! | GTAACAACTTCAAATATTGA+TGG | - | chr8.2:75056857-75056876 | None:intergenic | 25.0% |
| ! | GTGAAAAGTTCAAAATCAAA+AGG | - | chr8.2:75055083-75055102 | None:intergenic | 25.0% |
| ! | TAGCTAGTTAGTTAATTATC+TGG | + | chr8.2:75057085-75057104 | MS.gene011283:intron | 25.0% |
| ! | TGAATTGTGTAATAATTCAC+GGG | + | chr8.2:75055224-75055243 | MS.gene011283:intron | 25.0% |
| ! | TGATTGTGAACAATTTATCA+TGG | + | chr8.2:75057431-75057450 | MS.gene011283:intron | 25.0% |
| ! | TGTCAAAAAAAAACTACCAA+GGG | - | chr8.2:75055619-75055638 | None:intergenic | 25.0% |
| ! | TTCAAATTAATCTTACACGA+GGG | + | chr8.2:75056205-75056224 | MS.gene011283:intron | 25.0% |
| !! | AAAGTTTTCTTTTGAATGCA+TGG | - | chr8.2:75057363-75057382 | None:intergenic | 25.0% |
| !! | AAGTTTTCTTTTGAATGCAT+GGG | - | chr8.2:75057362-75057381 | None:intergenic | 25.0% |
| !! | GAAGTTTTCAGAGATTTTAA+GGG | + | chr8.2:75054367-75054386 | MS.gene011283:CDS | 25.0% |
| !! | GATTTTCTTCTTCTTGATAA+TGG | + | chr8.2:75057247-75057266 | MS.gene011283:intron | 25.0% |
| !! | GTAGAACTCTTGTTTATATT+AGG | + | chr8.2:75057036-75057055 | MS.gene011283:intron | 25.0% |
| !! | GTTTTTCTTGAGAATTTCAT+TGG | + | chr8.2:75054713-75054732 | MS.gene011283:intron | 25.0% |
| !! | TCAATATTTGAAGTTGTTAC+TGG | + | chr8.2:75056857-75056876 | MS.gene011283:CDS | 25.0% |
| !!! | ACAACTTAACAAGCTTTTTT+TGG | + | chr8.2:75055463-75055482 | MS.gene011283:intron | 25.0% |
| !!! | AGTTTAGTTTGTTGTGAAAT+GGG | + | chr8.2:75055266-75055285 | MS.gene011283:intron | 25.0% |
| !!! | GCAGTTTCTTTTTTATTGAT+TGG | + | chr8.2:75057702-75057721 | MS.gene011283:intron | 25.0% |
| !!! | TAATCAAGTTTTAAACTTGC+TGG | + | chr8.2:75055997-75056016 | MS.gene011283:intron | 25.0% |
| !!! | TCTTTTTTCGGTATTCTATT+TGG | + | chr8.2:75056418-75056437 | MS.gene011283:intron | 25.0% |
| AAAAGTGAATGTAACTTACC+TGG | - | chr8.2:75055938-75055957 | None:intergenic | 30.0% | |
| AAATCTGGTATCATATTGGA+TGG | + | chr8.2:75057216-75057235 | MS.gene011283:intron | 30.0% | |
| AAGAAAAATCCTGTAGAGAA+CGG | + | chr8.2:75056361-75056380 | MS.gene011283:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr8.2:75055593-75055612 | MS.gene011283:intron | 30.0% | |
| ACATGAAAATTAACCACATC+AGG | - | chr8.2:75055199-75055218 | None:intergenic | 30.0% | |
| AGCTGTTTAATAAGCTATGT+TGG | - | chr8.2:75055507-75055526 | None:intergenic | 30.0% | |
| ATATACCACCTTCACAAATT+TGG | - | chr8.2:75057613-75057632 | None:intergenic | 30.0% | |
| CTGTCAAAAAAAAACTACCA+AGG | - | chr8.2:75055620-75055639 | None:intergenic | 30.0% | |
| GCTAGTTAGTTAATTATCTG+GGG | + | chr8.2:75057087-75057106 | MS.gene011283:intron | 30.0% | |
| TTAACCATAAATCTTACCAG+CGG | + | chr8.2:75056720-75056739 | MS.gene011283:intron | 30.0% | |
| TTACTTGATTCTTTCAGAGA+AGG | + | chr8.2:75056462-75056481 | MS.gene011283:intron | 30.0% | |
| TTGAATGAAATCATGTGTCT+CGG | - | chr8.2:75054983-75055002 | None:intergenic | 30.0% | |
| ! | AAAGTACTCCAAATTTGTGA+AGG | + | chr8.2:75057602-75057621 | MS.gene011283:intron | 30.0% |
| ! | ATGATACCAGATTTAACTTC+TGG | - | chr8.2:75057210-75057229 | None:intergenic | 30.0% |
| ! | GGAAGTTTTCAGAGATTTTA+AGG | + | chr8.2:75054366-75054385 | MS.gene011283:CDS | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr8.2:75055416-75055435 | MS.gene011283:intron | 30.0% |
| !! | GAGTTTAGTTTGTTGTGAAA+TGG | + | chr8.2:75055265-75055284 | MS.gene011283:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr8.2:75055417-75055436 | MS.gene011283:intron | 30.0% |
| !! | TTGTCATAAGCTGTTTTCAT+AGG | - | chr8.2:75055447-75055466 | None:intergenic | 30.0% |
| !!! | GCAGTTTCTTTTTTATTGCT+TGG | + | chr8.2:75057672-75057691 | MS.gene011283:intron | 30.0% |
| !!! | GTTATTTTTGAAGTCTGATG+TGG | + | chr8.2:75057464-75057483 | MS.gene011283:intron | 30.0% |
| !!! | TTACAGGGCATTTCTTTTTT+CGG | + | chr8.2:75056406-75056425 | MS.gene011283:intron | 30.0% |
| AACAGGTCCTAAAAGATGAT+AGG | - | chr8.2:75055375-75055394 | None:intergenic | 35.0% | |
| AATGTGAAAACATGTGCTCA+AGG | - | chr8.2:75056167-75056186 | None:intergenic | 35.0% | |
| ACACATCATGTATCAATTGC+AGG | - | chr8.2:75055709-75055728 | None:intergenic | 35.0% | |
| ACATATGATAACTTAACCGC+TGG | - | chr8.2:75056739-75056758 | None:intergenic | 35.0% | |
| ATAGGCAACAACTGACTAAA+TGG | - | chr8.2:75055357-75055376 | None:intergenic | 35.0% | |
| ATGAAACAGTGACACATACA+AGG | - | chr8.2:75055050-75055069 | None:intergenic | 35.0% | |
| CAATGAAAGTCATGAGTACA+TGG | - | chr8.2:75056795-75056814 | None:intergenic | 35.0% | |
| CTCTTATTGTTACTGCATGA+TGG | - | chr8.2:75058008-75058027 | None:intergenic | 35.0% | |
| GAACACAACCAAAAAGTTCA+AGG | - | chr8.2:75055806-75055825 | None:intergenic | 35.0% | |
| GTAGATAAACCAATCCAAAC+AGG | - | chr8.2:75055392-75055411 | None:intergenic | 35.0% | |
| TAACTTACCTGGATCACATT+GGG | - | chr8.2:75055927-75055946 | None:intergenic | 35.0% | |
| TAGGCAACAACTGACTAAAT+GGG | - | chr8.2:75055356-75055375 | None:intergenic | 35.0% | |
| TCATCTTTAGGTAACTCCAA+TGG | - | chr8.2:75057801-75057820 | None:intergenic | 35.0% | |
| TGAACTAAAACTACCATAGG+TGG | + | chr8.2:75055300-75055319 | MS.gene011283:intron | 35.0% | |
| TTAACCGCTGGTAAGATTTA+TGG | - | chr8.2:75056727-75056746 | None:intergenic | 35.0% | |
| TTGTGAAAAAATGGCCACTT+TGG | + | chr8.2:75056140-75056159 | MS.gene011283:intron | 35.0% | |
| TTTCATGTGTACTGTTGTTC+TGG | + | chr8.2:75057497-75057516 | MS.gene011283:intron | 35.0% | |
| ! | AACTGAATTTTCAACTGGGT+TGG | + | chr8.2:75054575-75054594 | MS.gene011283:intron | 35.0% |
| ! | ATCTCTGAAAACTTCCTCAA+CGG | - | chr8.2:75054362-75054381 | None:intergenic | 35.0% |
| ! | ATTTTTGAATGGTGAAGCAG+CGG | + | chr8.2:75057745-75057764 | MS.gene011283:intron | 35.0% |
| ! | CTCTGAAAGAATCAAGTAAC+AGG | - | chr8.2:75056461-75056480 | None:intergenic | 35.0% |
| ! | GCCATGTTATACTGATTACA+GGG | + | chr8.2:75056391-75056410 | MS.gene011283:intron | 35.0% |
| ! | GGTCAACTGAATTTTCAACT+GGG | + | chr8.2:75054571-75054590 | MS.gene011283:intron | 35.0% |
| ! | GTTGTTGCCTATCATCTTTT+AGG | + | chr8.2:75055365-75055384 | MS.gene011283:intron | 35.0% |
| ! | TGCCATGTTATACTGATTAC+AGG | + | chr8.2:75056390-75056409 | MS.gene011283:intron | 35.0% |
| !! | AGGTTTGTTAGATATACCAG+TGG | - | chr8.2:75054422-75054441 | None:intergenic | 35.0% |
| !! | AGTTACATTCACTTTTCACG+TGG | + | chr8.2:75055942-75055961 | MS.gene011283:intron | 35.0% |
| !! | AGTTTTTCTTGCACTTGTTG+TGG | + | chr8.2:75055664-75055683 | MS.gene011283:intron | 35.0% |
| !! | ATTATGGCACTGATGAATTC+TGG | + | chr8.2:75057892-75057911 | MS.gene011283:CDS | 35.0% |
| !! | CAACGAAAAAAAGTACTGCT+AGG | - | chr8.2:75056302-75056321 | None:intergenic | 35.0% |
| !! | GTGTTTTTAATGTGGCTGTT+TGG | + | chr8.2:75055154-75055173 | MS.gene011283:intron | 35.0% |
| !! | TAGTTTGTTGTGAAATGGGA+AGG | + | chr8.2:75055270-75055289 | MS.gene011283:intron | 35.0% |
| !!! | ATCATCTTTTAGGACCTGTT+TGG | + | chr8.2:75055375-75055394 | MS.gene011283:intron | 35.0% |
| !!! | CAAGTTTTAAACTTGCTGGA+TGG | + | chr8.2:75056001-75056020 | MS.gene011283:intron | 35.0% |
| !!! | GGTCAACTGAATTTTCAAGT+GGG | + | chr8.2:75054778-75054797 | MS.gene011283:intron | 35.0% |
| AAAACTACCATAGGTGGATG+TGG | + | chr8.2:75055306-75055325 | MS.gene011283:intron | 40.0% | |
| AATCCAAAAGACAAATGCCG+TGG | - | chr8.2:75055978-75055997 | None:intergenic | 40.0% | |
| ACACTTTCGATCAGAAGTCT+CGG | - | chr8.2:75054943-75054962 | None:intergenic | 40.0% | |
| AGATTTGTCGAAGCCAAATC+TGG | - | chr8.2:75056683-75056702 | None:intergenic | 40.0% | |
| ATTATTTACCGCTTTCGAGC+TGG | - | chr8.2:75056948-75056967 | None:intergenic | 40.0% | |
| ATTTGTGAGAAGTGGTTCCA+TGG | + | chr8.2:75057927-75057946 | MS.gene011283:CDS | 40.0% | |
| CAATAAACCACATCCACCTA+TGG | - | chr8.2:75055316-75055335 | None:intergenic | 40.0% | |
| CATAGGTGGATGTGGTTTAT+TGG | + | chr8.2:75055314-75055333 | MS.gene011283:intron | 40.0% | |
| CATGACTTTCATTGTGATGC+AGG | + | chr8.2:75056801-75056820 | MS.gene011283:intron | 40.0% | |
| CCATCTCCAGAAGTTAAATC+TGG | + | chr8.2:75057201-75057220 | MS.gene011283:intron | 40.0% | |
| CTGATGATTGATACCTGATG+TGG | + | chr8.2:75055183-75055202 | MS.gene011283:intron | 40.0% | |
| CTGGATGGATGAATGCAATA+GGG | + | chr8.2:75056016-75056035 | MS.gene011283:intron | 40.0% | |
| GAGGAAGATGAAGATGAACA+TGG | + | chr8.2:75057840-75057859 | MS.gene011283:CDS | 40.0% | |
| GATCATTGATCATGCTGAAC+AGG | - | chr8.2:75056832-75056851 | None:intergenic | 40.0% | |
| GCCCTGTAATCAGTATAACA+TGG | - | chr8.2:75056395-75056414 | None:intergenic | 40.0% | |
| GGAGTTACCTAAAGATGATG+AGG | + | chr8.2:75057803-75057822 | MS.gene011283:CDS | 40.0% | |
| GTAACTTACCTGGATCACAT+TGG | - | chr8.2:75055928-75055947 | None:intergenic | 40.0% | |
| GTAATAATTCACGGGTTCTC+AGG | + | chr8.2:75055232-75055251 | MS.gene011283:intron | 40.0% | |
| GTACTCCAAATTTGTGAAGG+TGG | + | chr8.2:75057605-75057624 | MS.gene011283:intron | 40.0% | |
| GTTACCTAAAGATGATGAGG+TGG | + | chr8.2:75057806-75057825 | MS.gene011283:CDS | 40.0% | |
| TCTTCAGTTTCAAACCACAG+TGG | + | chr8.2:75056908-75056927 | MS.gene011283:CDS | 40.0% | |
| TGACATTTCGTGCTTCATTG+TGG | + | chr8.2:75055780-75055799 | MS.gene011283:intron | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | - | chr8.2:75057947-75057966 | None:intergenic | 40.0% | |
| TGCAGCAAAGAAACAAGTCA+AGG | + | chr8.2:75056880-75056899 | MS.gene011283:CDS | 40.0% | |
| TGGATGGATGAATGCAATAG+GGG | + | chr8.2:75056017-75056036 | MS.gene011283:intron | 40.0% | |
| TTATGCGTAAGCGCTTATCA+TGG | + | chr8.2:75055559-75055578 | MS.gene011283:intron | 40.0% | |
| TTCTATACCCAATGTGATCC+AGG | + | chr8.2:75055917-75055936 | MS.gene011283:CDS | 40.0% | |
| TTGTTTGCAATGGAAATCCC+TGG | + | chr8.2:75057399-75057418 | MS.gene011283:intron | 40.0% | |
| TTTGTGAGAAGTGGTTCCAT+GGG | + | chr8.2:75057928-75057947 | MS.gene011283:CDS | 40.0% | |
| ! | AGAGAAAGACTGGCTATCTT+TGG | + | chr8.2:75056606-75056625 | MS.gene011283:CDS | 40.0% |
| ! | CCAGATTTAACTTCTGGAGA+TGG | - | chr8.2:75057204-75057223 | None:intergenic | 40.0% |
| ! | CTGATGAACTATTTTCTGCC+TGG | + | chr8.2:75055869-75055888 | MS.gene011283:intron | 40.0% |
| ! | GGGTCAACTGAATTTTCAAC+TGG | + | chr8.2:75054570-75054589 | MS.gene011283:intron | 40.0% |
| ! | TGAAGTCTGATGTGGATTGT+GGG | + | chr8.2:75057472-75057491 | MS.gene011283:intron | 40.0% |
| ! | TGTTGTTCTGGATGTGATAG+CGG | + | chr8.2:75057509-75057528 | MS.gene011283:intron | 40.0% |
| ! | TTCTTTTGAATGCATGGGCA+AGG | - | chr8.2:75057357-75057376 | None:intergenic | 40.0% |
| ! | TTGAAGTCTGATGTGGATTG+TGG | + | chr8.2:75057471-75057490 | MS.gene011283:intron | 40.0% |
| ! | TTGCTGTTCACAGTGATTCA+TGG | + | chr8.2:75056629-75056648 | MS.gene011283:CDS | 40.0% |
| ! | TTTTTGAATGGTGAAGCAGC+GGG | + | chr8.2:75057746-75057765 | MS.gene011283:intron | 40.0% |
| !! | CATTGTGGCCTTGAACTTTT+TGG | + | chr8.2:75055795-75055814 | MS.gene011283:intron | 40.0% |
| !! | GGGTCAACTGAATTTTCAAG+TGG | + | chr8.2:75054777-75054796 | MS.gene011283:intron | 40.0% |
| !! | TACTACTTTGGTGCCAGATT+TGG | + | chr8.2:75056667-75056686 | MS.gene011283:CDS | 40.0% |
| !! | TTTCTTGCACTTGTTGTGGA+GGG | + | chr8.2:75055668-75055687 | MS.gene011283:intron | 40.0% |
| !!! | CTTTTAGGACCTGTTTGGAT+TGG | + | chr8.2:75055380-75055399 | MS.gene011283:intron | 40.0% |
| !!! | TTTTCTTGCACTTGTTGTGG+AGG | + | chr8.2:75055667-75055686 | MS.gene011283:intron | 40.0% |
| AAAACTACCAAGGGCCTGTT+TGG | - | chr8.2:75055610-75055629 | None:intergenic | 45.0% | |
| AAGGAGAACCTGTGCTTGTA+TGG | + | chr8.2:75056481-75056500 | MS.gene011283:CDS | 45.0% | |
| AATTCACGGGTTCTCAGGAA+TGG | + | chr8.2:75055237-75055256 | MS.gene011283:intron | 45.0% | |
| ACCTAAAGATGATGAGGTGG+AGG | + | chr8.2:75057809-75057828 | MS.gene011283:CDS | 45.0% | |
| ATCGCCATTGCGTACTACTT+TGG | + | chr8.2:75056655-75056674 | MS.gene011283:CDS | 45.0% | |
| ATGGCATGCAAGAGAAAGAC+TGG | + | chr8.2:75056596-75056615 | MS.gene011283:CDS | 45.0% | |
| ATTCACGGGTTCTCAGGAAT+GGG | + | chr8.2:75055238-75055257 | MS.gene011283:intron | 45.0% | |
| CACAATCACAATAGCCTCCA+GGG | - | chr8.2:75057419-75057438 | None:intergenic | 45.0% | |
| GAAATCATGTGTCTCGGACA+CGG | - | chr8.2:75054977-75054996 | None:intergenic | 45.0% | |
| GAACATGGAGAGACCTTATG+TGG | + | chr8.2:75057855-75057874 | MS.gene011283:CDS | 45.0% | |
| GCAAAGTTAATGCCAAGCAC+AGG | - | chr8.2:75056571-75056590 | None:intergenic | 45.0% | |
| GCAAGTAATCCGTTCTCTAC+AGG | - | chr8.2:75056373-75056392 | None:intergenic | 45.0% | |
| GCTGGATGGATGAATGCAAT+AGG | + | chr8.2:75056015-75056034 | MS.gene011283:intron | 45.0% | |
| GCTGTGACATTTGTGAGAAG+TGG | + | chr8.2:75057919-75057938 | MS.gene011283:CDS | 45.0% | |
| GCTTGGCATTAACTTTGCCA+GGG | + | chr8.2:75056573-75056592 | MS.gene011283:CDS | 45.0% | |
| GGAAGTCAATTTACCTGCTG+AGG | + | chr8.2:75056522-75056541 | MS.gene011283:CDS | 45.0% | |
| GGTTAAGCAGACAAAGCCAT+TGG | + | chr8.2:75057782-75057801 | MS.gene011283:CDS | 45.0% | |
| TCACAATCACAATAGCCTCC+AGG | - | chr8.2:75057420-75057439 | None:intergenic | 45.0% | |
| TCCTCCACCTCATCATCTTT+AGG | - | chr8.2:75057813-75057832 | None:intergenic | 45.0% | |
| TGCTTGGCATTAACTTTGCC+AGG | + | chr8.2:75056572-75056591 | MS.gene011283:CDS | 45.0% | |
| TGTTTATCCAAACAGGCCCT+TGG | + | chr8.2:75055600-75055619 | MS.gene011283:intron | 45.0% | |
| TTGGCTTCGACAAATCTGAC+AGG | + | chr8.2:75056686-75056705 | MS.gene011283:CDS | 45.0% | |
| TTTGCAATGGAAATCCCTGG+AGG | + | chr8.2:75057402-75057421 | MS.gene011283:intron | 45.0% | |
| AAAACTTCCTCAACGGTGCG+TGG | - | chr8.2:75054355-75054374 | None:intergenic | 50.0% | |
| ACATCTGCAACAGCACAACC+AGG | - | chr8.2:75055890-75055909 | None:intergenic | 50.0% | |
| ACCAGAGACAACACGTACAC+CGG | - | chr8.2:75055025-75055044 | None:intergenic | 50.0% | |
| AGATGATGAGGTGGAGGAAC+TGG | + | chr8.2:75057815-75057834 | MS.gene011283:CDS | 50.0% | |
| ATCCAAGTCCAGCTCGAAAG+CGG | + | chr8.2:75056937-75056956 | MS.gene011283:CDS | 50.0% | |
| CATGTGCTCAAGGACCAAAG+TGG | - | chr8.2:75056157-75056176 | None:intergenic | 50.0% | |
| CTCATCAAAGCTCTCACCAC+TGG | + | chr8.2:75054403-75054422 | MS.gene011283:CDS | 50.0% | |
| GAGACCTTATGTGGTGCATG+CGG | + | chr8.2:75057864-75057883 | MS.gene011283:CDS | 50.0% | |
| GGCACCAAAGTAGTACGCAA+TGG | - | chr8.2:75056662-75056681 | None:intergenic | 50.0% | |
| GGCATTAACTTTGCCAGGGA+TGG | + | chr8.2:75056577-75056596 | MS.gene011283:CDS | 50.0% | |
| GGGGAATTCAGCCCATGATT+TGG | + | chr8.2:75057106-75057125 | MS.gene011283:intron | 50.0% | |
| GTATAATCCACGCACCGTTG+AGG | + | chr8.2:75054345-75054364 | MS.gene011283:CDS | 50.0% | |
| GTCTGCTTAACCTGAGGTTC+TGG | - | chr8.2:75057774-75057793 | None:intergenic | 50.0% | |
| GTTAATGCCAAGCACAGGCT+CGG | - | chr8.2:75056566-75056585 | None:intergenic | 50.0% | |
| TAGGGAAGCCATACAAGCAC+AGG | - | chr8.2:75056492-75056511 | None:intergenic | 50.0% | |
| TGACTTCCCACTGCTCACTA+GGG | - | chr8.2:75056510-75056529 | None:intergenic | 50.0% | |
| TGATATGCTCAGCCCTAGCA+GGG | - | chr8.2:75057971-75057990 | None:intergenic | 50.0% | |
| TGTGAAGATCACCCCTGCTA+GGG | + | chr8.2:75057956-75057975 | MS.gene011283:CDS | 50.0% | |
| TTAATGCCAAGCACAGGCTC+GGG | - | chr8.2:75056565-75056584 | None:intergenic | 50.0% | |
| TTGACTTCCCACTGCTCACT+AGG | - | chr8.2:75056511-75056530 | None:intergenic | 50.0% | |
| TTGATATGCTCAGCCCTAGC+AGG | - | chr8.2:75057972-75057991 | None:intergenic | 50.0% | |
| TTTCTCTTGCATGCCATCCC+TGG | - | chr8.2:75056593-75056612 | None:intergenic | 50.0% | |
| ! | GGCTTTGTCTGCTTAACCTG+AGG | - | chr8.2:75057780-75057799 | None:intergenic | 50.0% |
| ! | GTGCCACGGCATTTGTCTTT+TGG | + | chr8.2:75055972-75055991 | MS.gene011283:intron | 50.0% |
| !! | ACTTGGATTTGCTGCCACTG+TGG | - | chr8.2:75056925-75056944 | None:intergenic | 50.0% |
| !! | GATTTTAAGGGTCGTCGTGC+TGG | + | chr8.2:75054379-75054398 | MS.gene011283:CDS | 50.0% |
| !!! | CACGTGGTAGTTTTGTGCCA+CGG | + | chr8.2:75055958-75055977 | MS.gene011283:intron | 50.0% |
| ACCGGTGTACGTGTTGTCTC+TGG | + | chr8.2:75055021-75055040 | MS.gene011283:intron | 55.0% | |
| AGAGACAACACGTACACCGG+TGG | - | chr8.2:75055022-75055041 | None:intergenic | 55.0% | |
| ATGGCTTCCCTAGTGAGCAG+TGG | + | chr8.2:75056500-75056519 | MS.gene011283:CDS | 55.0% | |
| CTCACCGCATGCACCACATA+AGG | - | chr8.2:75057871-75057890 | None:intergenic | 55.0% | |
| GATATGCTCAGCCCTAGCAG+GGG | - | chr8.2:75057970-75057989 | None:intergenic | 55.0% | |
| GGTGCATGCGGTGAGCATTA+TGG | + | chr8.2:75057876-75057895 | MS.gene011283:CDS | 55.0% | |
| GTGTGAAGATCACCCCTGCT+AGG | + | chr8.2:75057955-75057974 | MS.gene011283:CDS | 55.0% | |
| TACCGCTTTCGAGCTGGACT+TGG | - | chr8.2:75056942-75056961 | None:intergenic | 55.0% | |
| TGGCTTCCCTAGTGAGCAGT+GGG | + | chr8.2:75056501-75056520 | MS.gene011283:CDS | 55.0% | |
| TGTCTCGGACACGGAGACAT+AGG | - | chr8.2:75054968-75054987 | None:intergenic | 55.0% | |
| TCTGGCGGAACTTCCTCAGC+AGG | - | chr8.2:75056538-75056557 | None:intergenic | 60.0% | |
| TGAGGTGGAGGAACTGGACG+AGG | + | chr8.2:75057821-75057840 | MS.gene011283:CDS | 60.0% | |
| AGCACAGGCTCGGGAAGCTC+TGG | - | chr8.2:75056556-75056575 | None:intergenic | 65.0% | |
| GAGCTTCCCGAGCCTGTGCT+TGG | + | chr8.2:75056556-75056575 | MS.gene011283:CDS | 65.0% | |
| ! | ACAGGCTCGGGAAGCTCTGG+CGG | - | chr8.2:75056553-75056572 | None:intergenic | 65.0% |
| ! | GCAGCGGGCTCCAGAACCTC+AGG | + | chr8.2:75057761-75057780 | MS.gene011283:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 75054328 | 75058040 | 75054328 | ID=MS.gene011283 |
| chr8.2 | mRNA | 75054328 | 75058040 | 75054328 | ID=MS.gene011283.t1;Parent=MS.gene011283 |
| chr8.2 | exon | 75054328 | 75054424 | 75054328 | ID=MS.gene011283.t1.exon1;Parent=MS.gene011283.t1 |
| chr8.2 | CDS | 75054328 | 75054424 | 75054328 | ID=cds.MS.gene011283.t1;Parent=MS.gene011283.t1 |
| chr8.2 | exon | 75055906 | 75055938 | 75055906 | ID=MS.gene011283.t1.exon2;Parent=MS.gene011283.t1 |
| chr8.2 | CDS | 75055906 | 75055938 | 75055906 | ID=cds.MS.gene011283.t1;Parent=MS.gene011283.t1 |
| chr8.2 | exon | 75056479 | 75056707 | 75056479 | ID=MS.gene011283.t1.exon3;Parent=MS.gene011283.t1 |
| chr8.2 | CDS | 75056479 | 75056707 | 75056479 | ID=cds.MS.gene011283.t1;Parent=MS.gene011283.t1 |
| chr8.2 | exon | 75056823 | 75056958 | 75056823 | ID=MS.gene011283.t1.exon4;Parent=MS.gene011283.t1 |
| chr8.2 | CDS | 75056823 | 75056958 | 75056823 | ID=cds.MS.gene011283.t1;Parent=MS.gene011283.t1 |
| chr8.2 | exon | 75057765 | 75058040 | 75057765 | ID=MS.gene011283.t1.exon5;Parent=MS.gene011283.t1 |
| chr8.2 | CDS | 75057765 | 75058040 | 75057765 | ID=cds.MS.gene011283.t1;Parent=MS.gene011283.t1 |
| Gene Sequence |
| Protein sequence |
