AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011285

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011285.t1 MTR_8g019540 89.375 320 24 4 1 312 1 318 0.0 541
MS.gene011285.t1 MTR_2g099490 54.658 322 117 11 7 312 23 331 2.84e-92 277
MS.gene011285.t1 MTR_2g099490 52.537 335 120 11 7 312 23 347 1.81e-90 273
MS.gene011285.t1 MTR_2g041090 45.000 220 105 8 106 311 17 234 5.21e-45 153
MS.gene011285.t1 MTR_2g030170 63.333 90 32 1 133 222 85 173 8.17e-34 123
MS.gene011285.t1 MTR_2g030170 68.354 79 25 0 144 222 128 206 9.56e-33 121
MS.gene011285.t1 MTR_8g037270 47.651 149 60 5 144 275 136 283 1.84e-31 119
MS.gene011285.t1 MTR_3g061510 54.902 102 36 2 120 217 131 226 2.99e-31 119
MS.gene011285.t1 MTR_3g061510 54.902 102 36 2 120 217 151 246 3.92e-31 120
MS.gene011285.t1 MTR_1g056530 49.573 117 44 4 107 221 120 223 8.74e-27 107
MS.gene011285.t1 MTR_7g106450 49.153 118 45 4 107 222 122 226 2.20e-26 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011285.t1 AT3G14020 43.252 326 134 13 4 312 17 308 8.14e-59 191
MS.gene011285.t1 AT3G14020 43.252 326 134 13 4 312 17 308 8.14e-59 191
MS.gene011285.t1 AT1G72830 36.585 328 175 8 4 310 23 338 2.56e-52 175
MS.gene011285.t1 AT1G72830 37.160 331 170 11 4 310 23 339 1.61e-50 171
MS.gene011285.t1 AT1G54160 40.803 299 148 9 7 289 12 297 1.09e-47 162
MS.gene011285.t1 AT1G17590 38.110 328 153 11 7 310 25 326 4.26e-47 161
MS.gene011285.t1 AT1G17590 38.110 328 153 11 7 310 25 326 4.26e-47 161
MS.gene011285.t1 AT1G17590 38.110 328 153 11 7 310 25 326 4.26e-47 161
MS.gene011285.t1 AT1G17590 38.110 328 153 11 7 310 25 326 4.26e-47 161
MS.gene011285.t1 AT1G72830 33.028 327 163 8 4 310 23 313 3.83e-38 137
MS.gene011285.t1 AT1G30500 52.459 122 57 1 119 240 58 178 6.56e-38 133
MS.gene011285.t1 AT1G30500 50.820 122 55 1 119 240 58 174 4.33e-36 128
MS.gene011285.t1 AT2G34720 45.255 137 64 3 110 239 44 176 1.21e-31 117
MS.gene011285.t1 AT2G34720 47.328 131 58 3 116 239 15 141 1.99e-30 113
MS.gene011285.t1 AT2G34720 47.328 131 58 3 116 239 15 141 1.99e-30 113
MS.gene011285.t1 AT5G12840 45.802 131 57 4 99 224 112 233 3.36e-30 115
MS.gene011285.t1 AT5G12840 45.802 131 57 4 99 224 112 233 3.36e-30 115
MS.gene011285.t1 AT5G12840 45.802 131 57 4 99 224 113 234 3.58e-30 115
MS.gene011285.t1 AT5G12840 45.802 131 57 4 99 224 113 234 3.58e-30 115
MS.gene011285.t1 AT5G12840 45.802 131 57 4 99 224 113 234 3.58e-30 115
MS.gene011285.t1 AT3G20910 48.413 126 47 5 101 217 105 221 8.12e-30 115
MS.gene011285.t1 AT3G05690 46.667 135 50 6 104 230 90 210 4.47e-24 99.8
MS.gene011285.t1 AT5G06510 49.138 116 45 5 107 221 88 190 6.82e-24 98.6
MS.gene011285.t1 AT5G06510 49.138 116 45 5 107 221 88 190 6.82e-24 98.6
MS.gene011285.t1 AT5G06510 49.138 116 45 5 107 221 88 190 6.82e-24 98.6
MS.gene011285.t1 AT5G06510 49.138 116 45 5 107 221 88 190 6.82e-24 98.6
MS.gene011285.t1 AT3G05690 46.667 135 50 6 104 230 127 247 1.09e-23 99.4
MS.gene011285.t1 AT5G06510 51.351 111 40 5 112 221 44 141 1.37e-23 96.7
MS.gene011285.t1 AT5G06510 54.369 103 33 5 120 221 6 95 1.51e-23 95.5
MS.gene011285.t1 AT5G06510 54.369 103 33 5 120 221 6 95 1.51e-23 95.5

Find 80 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTATACTGGACAGAAAT+TGG 0.227693 8.2:-75040665 None:intergenic
TGCTTCGCATTCACATAAAT+TGG 0.276367 8.2:-75041628 None:intergenic
AACTGGTCGCCAATCTTATC+TGG 0.308062 8.2:+75039860 MS.gene011285:CDS
TACCTTGCCTCCTTCTCAAC+TGG 0.319759 8.2:+75040772 MS.gene011285:CDS
GCCGATGCCGGTGGTGGTGG+TGG 0.333845 8.2:+75042109 MS.gene011285:CDS
CGGATCATCTGCAGGGAGTC+AGG 0.383305 8.2:+75040745 MS.gene011285:CDS
ACATTATTCCGTGATCCATA+TGG 0.396988 8.2:-75041111 None:intergenic
GGTTCCTCACAAAGATTAAG+AGG 0.418602 8.2:-75041607 None:intergenic
TGTTCAACACTTAGCGAAAC+CGG 0.430982 8.2:+75040698 MS.gene011285:CDS
ATTGAGTAGAAGAAGAATCT+TGG 0.456059 8.2:-75039836 None:intergenic
CATGCTGAGACATACTCTAA+TGG 0.462998 8.2:+75041075 MS.gene011285:CDS
TGGCGCGACTCGTGTAGATA+TGG 0.466406 8.2:-75041809 None:intergenic
AAGCAGAGGAATTGTTATAC+TGG 0.467814 8.2:-75040676 None:intergenic
TGGTTACCCTTCTCATATGC+AGG 0.470689 8.2:+75042078 MS.gene011285:CDS
GGCCTACTAGCAGCTCCATA+TGG 0.471924 8.2:+75041096 MS.gene011285:CDS
TCTTCTTCTACTCAATCAAC+TGG 0.473460 8.2:+75039843 MS.gene011285:CDS
CTAATCATGTCTCTCACATA+AGG 0.480287 8.2:-75042153 None:intergenic
GGTATCATCGGATCATCTGC+AGG 0.483140 8.2:+75040737 MS.gene011285:CDS
GTGGAAATGTGCAGGAATCA+AGG 0.488946 8.2:+75041939 MS.gene011285:CDS
TCAGCCGATGCCGGTGGTGG+TGG 0.489227 8.2:+75042106 MS.gene011285:CDS
TTGAAGAGAGCTAGAGGCTC+TGG 0.491508 8.2:+75041842 MS.gene011285:CDS
CGCCAATCTTATCTGGAAGT+TGG 0.493422 8.2:+75039867 MS.gene011285:CDS
CAGATTCAACTGAGTGGTGG+TGG 0.501293 8.2:-75041915 None:intergenic
AACCTAGTGGTTTAGACTTG+TGG 0.508102 8.2:-75039800 None:intergenic
TTGTCAGCCGATGCCGGTGG+TGG 0.509405 8.2:+75042103 MS.gene011285:CDS
TAGCAGGAATGCCTCCCGTT+CGG 0.509646 8.2:+75041575 MS.gene011285:CDS
CCGATGCCGGTGGTGGTGGT+GGG 0.511417 8.2:+75042110 MS.gene011285:CDS
CCCACCACCACCACCGGCAT+CGG 0.515563 8.2:-75042110 None:intergenic
TTGATTCCCACCACCACCAC+CGG 0.519456 8.2:-75042116 None:intergenic
CAATGAAACACTCATGGCCA+TGG 0.528292 8.2:+75039694 None:intergenic
CAGGATTTGTCAGCCGATGC+CGG 0.529122 8.2:+75042097 MS.gene011285:CDS
TCTCTCACATAAGGACAGAT+AGG 0.538450 8.2:-75042144 None:intergenic
ACCTTCCACACTCTTTCCGC+CGG 0.539251 8.2:-75040717 None:intergenic
AACCAACTTCCAGATAAGAT+TGG 0.540368 8.2:-75039869 None:intergenic
AGAGGCAAAGGAATCCGAAC+GGG 0.545487 8.2:-75041589 None:intergenic
TTTGCCTCTTAATCTTTGTG+AGG 0.548183 8.2:+75041603 MS.gene011285:CDS
TGAAGTCGGATTCATGTCGT+TGG 0.553104 8.2:-75042048 None:intergenic
GACAAATCCTGCATATGAGA+AGG 0.557039 8.2:-75042085 None:intergenic
TCACAAAGATTAAGAGGCAA+AGG 0.559654 8.2:-75041601 None:intergenic
TGGAAATGTGCAGGAATCAA+GGG 0.560891 8.2:+75041940 MS.gene011285:CDS
ATCCATATGGAGCTGCTAGT+AGG 0.561398 8.2:-75041098 None:intergenic
GTTCATCATACTCAGCTAGC+AGG 0.563135 8.2:+75041559 MS.gene011285:CDS
CTCTCTTCAATGCATGCAGA+TGG 0.566697 8.2:-75041829 None:intergenic
AATGAAACACTCATGGCCAT+GGG 0.573475 8.2:+75039695 None:intergenic
ACTTGTGACGTCGGAACAAG+TGG 0.585137 8.2:-75042002 None:intergenic
GAATCTGAGTGGAAATGTGC+AGG 0.587768 8.2:+75041931 MS.gene011285:CDS
TTAGAGTATGTCTCAGCATG+AGG 0.588380 8.2:-75041072 None:intergenic
CAAGTAGAAAAGTATAGAGA+TGG 0.594749 8.2:+75041968 MS.gene011285:CDS
CGAAACCGGCGGAAAGAGTG+TGG 0.602019 8.2:+75040712 MS.gene011285:CDS
ACCGGCGGAAAGAGTGTGGA+AGG 0.603635 8.2:+75040716 MS.gene011285:CDS
TTGTGATCCAGTTGAGAAGG+AGG 0.605135 8.2:-75040779 None:intergenic
AAGAGTGTGGAAGGTATCAT+CGG 0.608613 8.2:+75040725 MS.gene011285:CDS
CATGCATTGAAGAGAGCTAG+AGG 0.616928 8.2:+75041836 MS.gene011285:CDS
TGGTGGAAACATTAAAGCCA+TGG 0.621019 8.2:-75041898 None:intergenic
TGATTGTGATCCAGTTGAGA+AGG 0.622776 8.2:-75040782 None:intergenic
GCTAAGTGTTGAACAAGCAG+AGG 0.624669 8.2:-75040690 None:intergenic
TCTTGAAATTGAAAACCTAG+TGG 0.627398 8.2:-75039813 None:intergenic
GGAAGACAATGAAACACTCA+TGG 0.629376 8.2:+75039688 None:intergenic
ACAAATCCTGCATATGAGAA+GGG 0.629662 8.2:-75042084 None:intergenic
GATTTGTCAGCCGATGCCGG+TGG 0.632484 8.2:+75042100 MS.gene011285:CDS
TAGCAGCTCCATATGGATCA+CGG 0.633412 8.2:+75041103 MS.gene011285:CDS
GGCAAAGGAATCCGAACGGG+AGG 0.635841 8.2:-75041586 None:intergenic
ATCCAGTTGAGAAGGAGGCA+AGG 0.636669 8.2:-75040774 None:intergenic
TAGAGTATGTCTCAGCATGA+GGG 0.637829 8.2:-75041071 None:intergenic
ATTAGAAGCACTTGTGACGT+CGG 0.643258 8.2:-75042011 None:intergenic
GTCTACGTCTCATAATAGCA+TGG 0.645173 8.2:-75041654 None:intergenic
GAATCCGACTTCAGATCATG+TGG 0.653505 8.2:+75042058 MS.gene011285:CDS
ATGAAACACTCATGGCCATG+GGG 0.654173 8.2:+75039696 MS.gene011285:CDS
ACCACTCAGTTGAATCTGAG+TGG 0.655182 8.2:+75041920 MS.gene011285:CDS
AAGAGAGCTAGAGGCTCTGG+CGG 0.658706 8.2:+75041845 MS.gene011285:CDS
AAGAGGCAAAGGAATCCGAA+CGG 0.660223 8.2:-75041590 None:intergenic
GTAACCACATGATCTGAAGT+CGG 0.661286 8.2:-75042062 None:intergenic
TCCACTCAGATTCAACTGAG+TGG 0.667577 8.2:-75041921 None:intergenic
GACGTCGGAACAAGTGGTTG+TGG 0.668249 8.2:-75041996 None:intergenic
TGCCACAAGTCTAAACCACT+AGG 0.682061 8.2:+75039798 MS.gene011285:CDS
ACTCAGATTCAACTGAGTGG+TGG 0.684029 8.2:-75041918 None:intergenic
GTATCATCGGATCATCTGCA+GGG 0.684338 8.2:+75040738 MS.gene011285:CDS
TGAAACACTCATGGCCATGG+GGG 0.692226 8.2:+75039697 MS.gene011285:CDS
CTCACATAAGGACAGATAGG+CGG 0.718305 8.2:-75042141 None:intergenic
TCAACACTTAGCGAAACCGG+CGG 0.741425 8.2:+75040701 MS.gene011285:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTAATTTCAATCTT+TGG - chr8.2:75040553-75040572 None:intergenic 10.0%
!!! ACATTATGAATATTTTAAAA+AGG - chr8.2:75040347-75040366 None:intergenic 10.0%
!! ATAATAAGTGGTTAAATATA+AGG + chr8.2:75040227-75040246 MS.gene011285:intron 15.0%
!! TTAACAATTAACTATCAATT+TGG - chr8.2:75040254-75040273 None:intergenic 15.0%
!! AGATAAAGACATAAATATGA+TGG - chr8.2:75041198-75041217 None:intergenic 20.0%
!! ATCATATTTATGTCTTTATC+TGG + chr8.2:75041197-75041216 MS.gene011285:intron 20.0%
! AAAGTAGATTATTAGAGATG+TGG + chr8.2:75039966-75039985 MS.gene011285:intron 25.0%
! AACTAGTATTAGAAAACTGT+TGG + chr8.2:75040582-75040601 MS.gene011285:intron 25.0%
! AATACTCATCAATATGCATT+AGG - chr8.2:75040635-75040654 None:intergenic 25.0%
! AATGATTCAAATGAGAAAAG+CGG - chr8.2:75040059-75040078 None:intergenic 25.0%
! ACAGATATATTCATTATGTC+AGG - chr8.2:75040157-75040176 None:intergenic 25.0%
! AGAATTCGTTCAAATTCAAA+AGG - chr8.2:75041337-75041356 None:intergenic 25.0%
! CAGATATATTCATTATGTCA+GGG - chr8.2:75040156-75040175 None:intergenic 25.0%
! CATGATATAAAAATCTTGAC+AGG + chr8.2:75041537-75041556 MS.gene011285:intron 25.0%
! TACAAAATCAATGACTAACT+TGG - chr8.2:75040115-75040134 None:intergenic 25.0%
! TCATGTATATATATTCACCA+TGG - chr8.2:75041522-75041541 None:intergenic 25.0%
! TGATTACATCAAGTCTAAAT+AGG - chr8.2:75040029-75040048 None:intergenic 25.0%
! TGTTTATAGATTCTATTGGT+TGG + chr8.2:75041455-75041474 MS.gene011285:intron 25.0%
! TTGTGTCAAAAATATTTGCA+CGG + chr8.2:75041163-75041182 MS.gene011285:intron 25.0%
!! GAAGTGTTTATAGATTCTAT+TGG + chr8.2:75041451-75041470 MS.gene011285:intron 25.0%
!! GGAACTAAATTGATAATAAG+TGG + chr8.2:75040215-75040234 MS.gene011285:intron 25.0%
!!! AAGTTAGTCATTGATTTTGT+AGG + chr8.2:75040114-75040133 MS.gene011285:intron 25.0%
!!! AGTTAGTCATTGATTTTGTA+GGG + chr8.2:75040115-75040134 MS.gene011285:intron 25.0%
AAAATCAATGACTAACTTGG+TGG - chr8.2:75040112-75040131 None:intergenic 30.0%
AGAAAACATGATATCCAAGA+AGG - chr8.2:75040446-75040465 None:intergenic 30.0%
AGAACAAACTCGTCAAAAAT+CGG + chr8.2:75041701-75041720 MS.gene011285:CDS 30.0%
ATTGAGTAGAAGAAGAATCT+TGG - chr8.2:75039839-75039858 None:intergenic 30.0%
GAAAACATGATATCCAAGAA+GGG - chr8.2:75040445-75040464 None:intergenic 30.0%
GTATATATGTGTTTGTGTGT+TGG + chr8.2:75040816-75040835 MS.gene011285:intron 30.0%
TACTCAAACGAACAACTATA+CGG - chr8.2:75041383-75041402 None:intergenic 30.0%
TATTGATGAGTATTTGCTCT+AGG + chr8.2:75040641-75040660 MS.gene011285:intron 30.0%
TCTTGAAATTGAAAACCTAG+TGG - chr8.2:75039816-75039835 None:intergenic 30.0%
TTGTTATACTGGACAGAAAT+TGG - chr8.2:75040668-75040687 None:intergenic 30.0%
! AATATCATGTTTTCCTGCAA+AGG - chr8.2:75041299-75041318 None:intergenic 30.0%
! ATTAGTGGTCAAACAGATTT+TGG - chr8.2:75040479-75040498 None:intergenic 30.0%
! CAAGTAGAAAAGTATAGAGA+TGG + chr8.2:75041968-75041987 MS.gene011285:CDS 30.0%
! CTTCTAAGAAGCTTAGTTAA+AGG - chr8.2:75041435-75041454 None:intergenic 30.0%
! GCTTAGTTAAAGGCATAAAT+AGG - chr8.2:75041425-75041444 None:intergenic 30.0%
! TTAGTGGTCAAACAGATTTT+GGG - chr8.2:75040478-75040497 None:intergenic 30.0%
!! AGTACAGTGTTGATAAATAG+AGG - chr8.2:75040920-75040939 None:intergenic 30.0%
!! GTGCAAATATTTTTGACACA+AGG - chr8.2:75041164-75041183 None:intergenic 30.0%
!! TATTAGTCTTTGTGACAACA+TGG + chr8.2:75040190-75040209 MS.gene011285:intron 30.0%
!!! ACCAACTTGATGGTTTTATA+GGG + chr8.2:75040315-75040334 MS.gene011285:intron 30.0%
AAAAAGAGAAACACCTTTGC+AGG + chr8.2:75041283-75041302 MS.gene011285:intron 35.0%
AAATTAGTCCCTGACTTTGT+AGG - chr8.2:75040388-75040407 None:intergenic 35.0%
AACCAACTTCCAGATAAGAT+TGG - chr8.2:75039872-75039891 None:intergenic 35.0%
AAGCAGAGGAATTGTTATAC+TGG - chr8.2:75040679-75040698 None:intergenic 35.0%
AATTAGTCCCTGACTTTGTA+GGG - chr8.2:75040387-75040406 None:intergenic 35.0%
ACAAATCCTGCATATGAGAA+GGG - chr8.2:75042087-75042106 None:intergenic 35.0%
ACATTATTCCGTGATCCATA+TGG - chr8.2:75041114-75041133 None:intergenic 35.0%
ACCCTATAAAACCATCAAGT+TGG - chr8.2:75040319-75040338 None:intergenic 35.0%
AGAAGAGAGAGAAGTCTAAA+AGG - chr8.2:75040422-75040441 None:intergenic 35.0%
ATAGTGAGTGGTCAAATATG+GGG + chr8.2:75040292-75040311 MS.gene011285:intron 35.0%
GATAGTGAGTGGTCAAATAT+GGG + chr8.2:75040291-75040310 MS.gene011285:intron 35.0%
GTGTTGTCAATTGTGAATTG+TGG + chr8.2:75040855-75040874 MS.gene011285:intron 35.0%
TACAAAGTCAGGGACTAATT+TGG + chr8.2:75040387-75040406 MS.gene011285:intron 35.0%
TCAAGTAACTCAATGGCATT+TGG - chr8.2:75041495-75041514 None:intergenic 35.0%
TCACAAAGATTAAGAGGCAA+AGG - chr8.2:75041604-75041623 None:intergenic 35.0%
TCTTCAGTGTTGTCAAATAG+TGG - chr8.2:75041001-75041020 None:intergenic 35.0%
TCTTCTTCTACTCAATCAAC+TGG + chr8.2:75039843-75039862 MS.gene011285:CDS 35.0%
TGCTTCGCATTCACATAAAT+TGG - chr8.2:75041631-75041650 None:intergenic 35.0%
TGGTACTTCAAGTAACTCAA+TGG - chr8.2:75041502-75041521 None:intergenic 35.0%
TTGACCACTCACTATCAATT+AGG - chr8.2:75040287-75040306 None:intergenic 35.0%
TTGTCAAATAGTGGCTATAG+CGG - chr8.2:75040992-75041011 None:intergenic 35.0%
TTTCTTATAGTCTGCCTTTC+AGG + chr8.2:75041035-75041054 MS.gene011285:intron 35.0%
TTTGCCTCTTAATCTTTGTG+AGG + chr8.2:75041603-75041622 MS.gene011285:CDS 35.0%
! AGTTAGATTTTCTGACAGAG+AGG - chr8.2:75039751-75039770 None:intergenic 35.0%
! GGATATCATGTTTTCTACCA+TGG + chr8.2:75040450-75040469 MS.gene011285:intron 35.0%
! TGATAGTGAGTGGTCAAATA+TGG + chr8.2:75040290-75040309 MS.gene011285:intron 35.0%
! TTGAGTTACTTGAAGTACCA+TGG + chr8.2:75041502-75041521 MS.gene011285:intron 35.0%
!!! CTTGATGGTTTTATAGGGTT+AGG + chr8.2:75040320-75040339 MS.gene011285:intron 35.0%
!!! GACCAACTTGATGGTTTTAT+AGG + chr8.2:75040314-75040333 MS.gene011285:intron 35.0%
AAAGTCAGGGACTAATTTGG+CGG + chr8.2:75040390-75040409 MS.gene011285:intron 40.0%
AAATATGGGGACCAACTTGA+TGG + chr8.2:75040305-75040324 MS.gene011285:intron 40.0%
AACCTAGTGGTTTAGACTTG+TGG - chr8.2:75039803-75039822 None:intergenic 40.0%
AATATACTCCCCTCACATAC+AGG - chr8.2:75040509-75040528 None:intergenic 40.0%
AATGTCTAGTCCTGTATGTG+AGG + chr8.2:75040496-75040515 MS.gene011285:intron 40.0%
ACCAAAAAGCTTCAAGACCA+TGG + chr8.2:75041881-75041900 MS.gene011285:CDS 40.0%
AGCAGTTTCTTCCAATGCTA+TGG + chr8.2:75040883-75040902 MS.gene011285:intron 40.0%
AGTCTTTGTGACAACATGGT+AGG + chr8.2:75040194-75040213 MS.gene011285:intron 40.0%
ATGTCTAGTCCTGTATGTGA+GGG + chr8.2:75040497-75040516 MS.gene011285:intron 40.0%
ATTTGATGCCCTACAAAGTC+AGG + chr8.2:75040376-75040395 MS.gene011285:intron 40.0%
CATACAGGACTAGACATTAG+TGG - chr8.2:75040494-75040513 None:intergenic 40.0%
CATGCTGAGACATACTCTAA+TGG + chr8.2:75041075-75041094 MS.gene011285:CDS 40.0%
GAATGCAACATGATCCTGAA+AGG - chr8.2:75041052-75041071 None:intergenic 40.0%
GACAAATCCTGCATATGAGA+AGG - chr8.2:75042088-75042107 None:intergenic 40.0%
GGTTCCTCACAAAGATTAAG+AGG - chr8.2:75041610-75041629 None:intergenic 40.0%
GTCTACGTCTCATAATAGCA+TGG - chr8.2:75041657-75041676 None:intergenic 40.0%
TAGAGTATGTCTCAGCATGA+GGG - chr8.2:75041074-75041093 None:intergenic 40.0%
TGATTGTGATCCAGTTGAGA+AGG - chr8.2:75040785-75040804 None:intergenic 40.0%
TGGAAATGTGCAGGAATCAA+GGG + chr8.2:75041940-75041959 MS.gene011285:CDS 40.0%
TGGTGGAAACATTAAAGCCA+TGG - chr8.2:75041901-75041920 None:intergenic 40.0%
TGTTCAACACTTAGCGAAAC+CGG + chr8.2:75040698-75040717 MS.gene011285:CDS 40.0%
TTAGAGTATGTCTCAGCATG+AGG - chr8.2:75041075-75041094 None:intergenic 40.0%
TTTGATGCCCTACAAAGTCA+GGG + chr8.2:75040377-75040396 MS.gene011285:intron 40.0%
! GACTTTGTAGGGCATCAAAT+AGG - chr8.2:75040376-75040395 None:intergenic 40.0%
! GTAACCACATGATCTGAAGT+CGG - chr8.2:75042065-75042084 None:intergenic 40.0%
!! AAGAGTGTGGAAGGTATCAT+CGG + chr8.2:75040725-75040744 MS.gene011285:CDS 40.0%
!! ATTAGAAGCACTTGTGACGT+CGG - chr8.2:75042014-75042033 None:intergenic 40.0%
!! CAAACAGATTTTGGGTACCA+TGG - chr8.2:75040470-75040489 None:intergenic 40.0%
!! GAGACCTAATTGATAGTGAG+TGG + chr8.2:75040280-75040299 MS.gene011285:intron 40.0%
AACTGGTCGCCAATCTTATC+TGG + chr8.2:75039860-75039879 MS.gene011285:CDS 45.0%
AAGAGGCAAAGGAATCCGAA+CGG - chr8.2:75041593-75041612 None:intergenic 45.0%
ACCACTCAGTTGAATCTGAG+TGG + chr8.2:75041920-75041939 MS.gene011285:CDS 45.0%
ACTCAGATTCAACTGAGTGG+TGG - chr8.2:75041921-75041940 None:intergenic 45.0%
ATCCATATGGAGCTGCTAGT+AGG - chr8.2:75041101-75041120 None:intergenic 45.0%
ATGAAACACTCATGGCCATG+GGG + chr8.2:75039696-75039715 MS.gene011285:CDS 45.0%
CATGCATTGAAGAGAGCTAG+AGG + chr8.2:75041836-75041855 MS.gene011285:CDS 45.0%
CGCCAATCTTATCTGGAAGT+TGG + chr8.2:75039867-75039886 MS.gene011285:CDS 45.0%
CGTTTGAGTAAATGCTGCAG+TGG + chr8.2:75041393-75041412 MS.gene011285:intron 45.0%
CTATAGCGACACCATAGCAT+TGG - chr8.2:75040897-75040916 None:intergenic 45.0%
CTCTCTTCAATGCATGCAGA+TGG - chr8.2:75041832-75041851 None:intergenic 45.0%
GAATCCGACTTCAGATCATG+TGG + chr8.2:75042058-75042077 MS.gene011285:CDS 45.0%
GAATCTGAGTGGAAATGTGC+AGG + chr8.2:75041931-75041950 MS.gene011285:CDS 45.0%
GTATCATCGGATCATCTGCA+GGG + chr8.2:75040738-75040757 MS.gene011285:CDS 45.0%
GTGGAAATGTGCAGGAATCA+AGG + chr8.2:75041939-75041958 MS.gene011285:CDS 45.0%
GTTCATCATACTCAGCTAGC+AGG + chr8.2:75041559-75041578 MS.gene011285:CDS 45.0%
TAGCAGCTCCATATGGATCA+CGG + chr8.2:75041103-75041122 MS.gene011285:CDS 45.0%
TCCACTCAGATTCAACTGAG+TGG - chr8.2:75041924-75041943 None:intergenic 45.0%
TGAAGTCGGATTCATGTCGT+TGG - chr8.2:75042051-75042070 None:intergenic 45.0%
TGCCACAAGTCTAAACCACT+AGG + chr8.2:75039798-75039817 MS.gene011285:CDS 45.0%
TGGTTACCCTTCTCATATGC+AGG + chr8.2:75042078-75042097 MS.gene011285:CDS 45.0%
TGTCTAGTCCTGTATGTGAG+GGG + chr8.2:75040498-75040517 MS.gene011285:intron 45.0%
TTCTCTCTCTTCTCCCTTCT+TGG + chr8.2:75040429-75040448 MS.gene011285:intron 45.0%
TTGTGATCCAGTTGAGAAGG+AGG - chr8.2:75040782-75040801 None:intergenic 45.0%
!! GCCATGGTCTTGAAGCTTTT+TGG - chr8.2:75041885-75041904 None:intergenic 45.0%
!! GCTAAGTGTTGAACAAGCAG+AGG - chr8.2:75040693-75040712 None:intergenic 45.0%
ACTTGTGACGTCGGAACAAG+TGG - chr8.2:75042005-75042024 None:intergenic 50.0%
AGAGGCAAAGGAATCCGAAC+GGG - chr8.2:75041592-75041611 None:intergenic 50.0%
ATCCAGTTGAGAAGGAGGCA+AGG - chr8.2:75040777-75040796 None:intergenic 50.0%
CAGATTCAACTGAGTGGTGG+TGG - chr8.2:75041918-75041937 None:intergenic 50.0%
GATTCAGAACAAGTCCCCCA+TGG - chr8.2:75039714-75039733 None:intergenic 50.0%
GGTATCATCGGATCATCTGC+AGG + chr8.2:75040737-75040756 MS.gene011285:CDS 50.0%
TACCTTGCCTCCTTCTCAAC+TGG + chr8.2:75040772-75040791 MS.gene011285:CDS 50.0%
TCAACACTTAGCGAAACCGG+CGG + chr8.2:75040701-75040720 MS.gene011285:CDS 50.0%
TGAAACACTCATGGCCATGG+GGG + chr8.2:75039697-75039716 MS.gene011285:CDS 50.0%
TTGAAGAGAGCTAGAGGCTC+TGG + chr8.2:75041842-75041861 MS.gene011285:CDS 50.0%
ACCTTCCACACTCTTTCCGC+CGG - chr8.2:75040720-75040739 None:intergenic 55.0%
CAGGATTTGTCAGCCGATGC+CGG + chr8.2:75042097-75042116 MS.gene011285:CDS 55.0%
GACGTCGGAACAAGTGGTTG+TGG - chr8.2:75041999-75042018 None:intergenic 55.0%
GGCCTACTAGCAGCTCCATA+TGG + chr8.2:75041096-75041115 MS.gene011285:CDS 55.0%
TAGCAGGAATGCCTCCCGTT+CGG + chr8.2:75041575-75041594 MS.gene011285:CDS 55.0%
TGGCGCGACTCGTGTAGATA+TGG - chr8.2:75041812-75041831 None:intergenic 55.0%
TTGATTCCCACCACCACCAC+CGG - chr8.2:75042119-75042138 None:intergenic 55.0%
! AAGAGAGCTAGAGGCTCTGG+CGG + chr8.2:75041845-75041864 MS.gene011285:CDS 55.0%
CGAAACCGGCGGAAAGAGTG+TGG + chr8.2:75040712-75040731 MS.gene011285:CDS 60.0%
CGGATCATCTGCAGGGAGTC+AGG + chr8.2:75040745-75040764 MS.gene011285:CDS 60.0%
GATTTGTCAGCCGATGCCGG+TGG + chr8.2:75042100-75042119 MS.gene011285:CDS 60.0%
GGCAAAGGAATCCGAACGGG+AGG - chr8.2:75041589-75041608 None:intergenic 60.0%
! ACCGGCGGAAAGAGTGTGGA+AGG + chr8.2:75040716-75040735 MS.gene011285:CDS 60.0%
TTGTCAGCCGATGCCGGTGG+TGG + chr8.2:75042103-75042122 MS.gene011285:CDS 65.0%
CCCACCACCACCACCGGCAT+CGG - chr8.2:75042113-75042132 None:intergenic 70.0%
! TCAGCCGATGCCGGTGGTGG+TGG + chr8.2:75042106-75042125 MS.gene011285:CDS 70.0%
!! CCGATGCCGGTGGTGGTGGT+GGG + chr8.2:75042110-75042129 MS.gene011285:CDS 70.0%
!! GCCGATGCCGGTGGTGGTGG+TGG + chr8.2:75042109-75042128 MS.gene011285:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 75039696 75042162 75039696 ID=MS.gene011285
chr8.2 mRNA 75039696 75042162 75039696 ID=MS.gene011285.t1;Parent=MS.gene011285
chr8.2 exon 75039696 75039888 75039696 ID=MS.gene011285.t1.exon1;Parent=MS.gene011285.t1
chr8.2 CDS 75039696 75039888 75039696 ID=cds.MS.gene011285.t1;Parent=MS.gene011285.t1
chr8.2 exon 75040663 75040811 75040663 ID=MS.gene011285.t1.exon2;Parent=MS.gene011285.t1
chr8.2 CDS 75040663 75040811 75040663 ID=cds.MS.gene011285.t1;Parent=MS.gene011285.t1
chr8.2 exon 75041057 75041131 75041057 ID=MS.gene011285.t1.exon3;Parent=MS.gene011285.t1
chr8.2 CDS 75041057 75041131 75041057 ID=cds.MS.gene011285.t1;Parent=MS.gene011285.t1
chr8.2 exon 75041559 75041726 75041559 ID=MS.gene011285.t1.exon4;Parent=MS.gene011285.t1
chr8.2 CDS 75041559 75041726 75041559 ID=cds.MS.gene011285.t1;Parent=MS.gene011285.t1
chr8.2 exon 75041809 75042162 75041809 ID=MS.gene011285.t1.exon5;Parent=MS.gene011285.t1
chr8.2 CDS 75041809 75042162 75041809 ID=cds.MS.gene011285.t1;Parent=MS.gene011285.t1
Gene Sequence

>MS.gene011285

ATGAAACACTCATGGCCATGGGGGACTTGTTCTGAATCTGATGTGCAACAATCCTCTCTGTCAGAAAATCTAACTTTGAATATGAGTGTTTTGCAACAAGAATGCCACAAGTCTAAACCACTAGGTTTTCAATTTCAAGACCAAGATTCTTCTTCTACTCAATCAACTGGTCGCCAATCTTATCTGGAAGTTGGTTCGTAATTAAATCTGTTACATATCTGCATTTGACTCTTGTTATCAATTGTTTTTTTTTTATTTCTATAAGCATCAAAAGTAGATTATTAGAGATGTGGTTAGTAGTTGATTATTATTTAGACTACTTTGTGAATGCCTATTTAGACTTGATGTAATCATTTGAATCCGCTTTTCTCATTTGAATCATTTTACACTCATCAATACAGTAAACAAGTAAACCACCAAGTTAGTCATTGATTTTGTAGGGCGCTCTCATATAAATCCCTGACATAATGAATATATCTGTAAAACTTTACTCATATTAGTCTTTGTGACAACATGGTAGGAACTAAATTGATAATAAGTGGTTAAATATAAGGACCAAATTGATAGTTAATTGTTAAGATATAGAGACCTAATTGATAGTGAGTGGTCAAATATGGGGACCAACTTGATGGTTTTATAGGGTTAGGACCTTTTTAAAATATTCATAATGTCAGAGACCTATTTGATGCCCTACAAAGTCAGGGACTAATTTGGCGGTTTACTCCTTTTAGACTTCTCTCTCTTCTCCCTTCTTGGATATCATGTTTTCTACCATGGTACCCAAAATCTGTTTGACCACTAATGTCTAGTCCTGTATGTGAGGGGAGTATATTAAGAGTCACACATTGTTCTTTCCAAAGATTGAAATTAATATTTTAGACAAATCAACTAGTATTAGAAAACTGTTGGAGTACAAAATTTAAACTTTTGTCACTTCCTAATGCATATTGATGAGTATTTGCTCTAGGTCCAATTTCTGTCCAGTATAACAATTCCTCTGCTTGTTCAACACTTAGCGAAACCGGCGGAAAGAGTGTGGAAGGTATCATCGGATCATCTGCAGGGAGTCAGGATTTTACCTTGCCTCCTTCTCAACTGGATCACAATCAATCACTTGTAAGTATATATGTGTTTGTGTGTTGGTGCAAAGAAGATATAAGTGTTGTCAATTGTGAATTGTGGAAAATAGCAGTTTCTTCCAATGCTATGGTGTCGCTATAGCCTCTATTTATCAACACTGTACTAAATAGCGTATCACAAATTAATAGCAATTTACTCAATAGTTTTGTAGCGCCGCTATAGCCACTATTTGACAACACTGAAGATAGTTGCAATTTTTTTTCTTATAGTCTGCCTTTCAGGATCATGTTGCATTCCCTCATGCTGAGACATACTCTAATGGCCTACTAGCAGCTCCATATGGATCACGGAATAATGTAAGATTTGAGTTTGTTCATTTCTTTTACCTTGTGTCAAAAATATTTGCACGGAAAATTATGCCATCATATTTATGTCTTTATCTGGAATGTACAATGTTGCTTTTGCTTCTGATTTTGCAGTGTAGTCTTTGTTATGTCACGAAATTAGAAAAAGAGAAACACCTTTGCAGGAAAACATGATATTCTTATTGTAACTTTTCCTTTTGAATTTGAACGAATTCTGTTCTAAGTTTTTTGTGATTCTTCCGTATAGTTGTTCGTTTGAGTAAATGCTGCAGTGGTTGAATCCTATTTATGCCTTTAACTAAGCTTCTTAGAAGTGTTTATAGATTCTATTGGTTGGTTTTCAATTTATATCCAAATGCCATTGAGTTACTTGAAGTACCATGGTGAATATATATACATGATATAAAAATCTTGACAGGTTCATCATACTCAGCTAGCAGGAATGCCTCCCGTTCGGATTCCTTTGCCTCTTAATCTTTGTGAGGAACCAATTTATGTGAATGCGAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTCGTCAAAAATCGGAAAGTAAGCATACTTTTTTGTTCTTTTTCTCTAATGCAAATTTCTCTTTATTTCTCTCAATAACATTTTGAATATTGTCTTGCAGCCATATCTACACGAGTCGCGCCATCTGCATGCATTGAAGAGAGCTAGAGGCTCTGGCGGACGTTTTCTAAATACCAAAAAGCTTCAAGACCATGGCTTTAATGTTTCCACCACCACTCAGTTGAATCTGAGTGGAAATGTGCAGGAATCAAGGGTACATCAAGTAGAAAAGTATAGAGATGGTGCTTCCACAACCACTTGTTCCGACGTCACAAGTGCTTCTAATTGTGACGATATGTTCCAACGACATGAATCCGACTTCAGATCATGTGGTTACCCTTCTCATATGCAGGATTTGTCAGCCGATGCCGGTGGTGGTGGTGGGAATCAACACCGCCTATCTGTCCTTATGTGA
Protein sequence

>MS.gene011285.t1

MKHSWPWGTCSESDVQQSSLSENLTLNMSVLQQECHKSKPLGFQFQDQDSSSTQSTGRQSYLEVGPISVQYNNSSACSTLSETGGKSVEGIIGSSAGSQDFTLPPSQLDHNQSLDHVAFPHAETYSNGLLAAPYGSRNNVHHTQLAGMPPVRIPLPLNLCEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLVKNRKPYLHESRHLHALKRARGSGGRFLNTKKLQDHGFNVSTTTQLNLSGNVQESRVHQVEKYRDGASTTTCSDVTSASNCDDMFQRHESDFRSCGYPSHMQDLSADAGGGGGNQHRLSVLM