AlfalfaGEDB | MS.gene01145

M. sativa cultivar XinJiangDaYe / MS.gene01145

KEGG: K13416
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01145.t1	XP_003593155.1	85.7	224	30	1	8	231	381	602	3.00E-105	391.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01145.t1	Q94F62	79.0	224	45	1	8	231	377	598	4.0e-98	359.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01145.t1	E2IXG1	85.7	224	30	1	8	231	381	602	2.2e-105	391.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01145.t1	MTR_2g008370	93.659	205	12	1	8	212	377	580	2.23e-137	397
MS.gene01145.t1	MTR_2g008380	81.250	224	40	1	8	231	373	594	8.24e-129	377
MS.gene01145.t1	MTR_2g008360	86.603	209	28	0	8	216	381	589	3.21e-128	375
MS.gene01145.t1	MTR_2g008390	79.018	224	45	1	8	231	382	603	1.14e-125	369
MS.gene01145.t1	MTR_2g008400	75.217	230	49	3	8	231	383	610	6.76e-117	347
MS.gene01145.t1	MTR_1g097160	74.107	224	54	2	8	231	392	611	1.58e-111	333
MS.gene01145.t1	MTR_5g033820	64.734	207	72	1	13	219	395	600	1.14e-88	274
MS.gene01145.t1	MTR_7g018200	64.878	205	71	1	9	213	391	594	5.38e-88	272
MS.gene01145.t1	MTR_6g016495	61.611	211	80	1	1	211	381	590	5.58e-87	270
MS.gene01145.t1	MTR_8g090140	63.819	199	72	0	16	214	379	577	1.59e-86	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01145.t1	AT4G33430	79.018	224	45	1	8	231	377	598	4.63e-124	365
MS.gene01145.t1	AT4G33430	79.018	224	45	1	8	231	424	645	1.81e-123	365
MS.gene01145.t1	AT1G71830	74.107	224	54	2	8	231	390	609	4.17e-113	337
MS.gene01145.t1	AT1G34210	74.107	224	54	2	8	231	393	612	2.36e-112	335
MS.gene01145.t1	AT1G34210	74.107	224	54	2	8	231	393	612	2.36e-112	335
MS.gene01145.t1	AT2G13800	71.429	224	62	2	8	231	246	467	2.06e-107	318
MS.gene01145.t1	AT2G13800	71.429	224	62	2	8	231	246	467	2.06e-107	318
MS.gene01145.t1	AT2G13790	71.875	224	61	2	8	231	382	603	1.03e-106	320
MS.gene01145.t1	AT2G13800	71.429	224	62	2	8	231	363	584	9.13e-106	317
MS.gene01145.t1	AT2G13800	71.429	224	62	2	8	231	363	584	9.13e-106	317

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Find 53 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTGTATGCAGGTTAA+AGG	0.337391	2.1:-74213608	MS.gene01145:intron
AAGACCTAAGATGTCTGAGA+TGG	0.615662	2.1:-74213462	MS.gene01145:CDS
AATGCTAGAAGGCCATGGTT+TGG	0.482545	2.1:-74213435	MS.gene01145:CDS
ACATCACGGTGAATAATCTT+AGG	0.189999	2.1:+74214028	None:intergenic
ACATCTTAGGTCTTTCCATA+GGG	0.486312	2.1:+74213471	None:intergenic
ACTCTCAACCTCCGCTTGAG+TGG	0.556364	2.1:-74214117	MS.gene01145:CDS
ACTGCGGAAGAATATTGCGC+TGG	0.546044	2.1:-74214092	MS.gene01145:CDS
ACTGCTGTCTTCGGTACGAT+TGG	0.458628	2.1:-74213908	MS.gene01145:CDS
ACTGGTAGATGCAGAGTTAA+AGG	0.286250	2.1:-74213558	MS.gene01145:CDS
AGAGAAGAAGTTTGAAACAC+TGG	0.534980	2.1:-74213576	MS.gene01145:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCTAACTCCAACACTA+TGG	-	chr2.1:74214127-74214146	MS.gene01145:CDS	30.0%
AAATTCTGTATGCAGGTTAA+AGG	-	chr2.1:74214170-74214189	MS.gene01145:intron	30.0%
ATGCTTCTTGAACTAATAAC+TGG	-	chr2.1:74213963-74213982	MS.gene01145:CDS	30.0%
CTACAACAACAGAAAGATAT+CGG	+	chr2.1:74213632-74213651	None:intergenic	30.0%
ACATCACGGTGAATAATCTT+AGG	+	chr2.1:74213753-74213772	None:intergenic	35.0%
ACATCTTAGGTCTTTCCATA+GGG	+	chr2.1:74214310-74214329	None:intergenic	35.0%
ATCACCCTTCTAATGCAAAT+TGG	-	chr2.1:74214435-74214454	MS.gene01145:intron	35.0%
ATGATGCGATATTGCTTGAT+TGG	-	chr2.1:74214024-74214043	MS.gene01145:CDS	35.0%
ATTAATGCATGCCATAGTGT+TGG	+	chr2.1:74214141-74214160	None:intergenic	35.0%
CACACCATATGCAAAAACAT+CGG	+	chr2.1:74213943-74213962	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	74213337	74214463	74213337	ID=MS.gene01145
chr2.1	mRNA	74213337	74214463	74213337	ID=MS.gene01145.t1;Parent=MS.gene01145
chr2.1	exon	74214442	74214463	74214442	ID=MS.gene01145.t1.exon1;Parent=MS.gene01145.t1
chr2.1	CDS	74214442	74214463	74214442	ID=cds.MS.gene01145.t1;Parent=MS.gene01145.t1
chr2.1	exon	74213754	74214148	74213754	ID=MS.gene01145.t1.exon2;Parent=MS.gene01145.t1
chr2.1	CDS	74213754	74214148	74213754	ID=cds.MS.gene01145.t1;Parent=MS.gene01145.t1
chr2.1	exon	74213337	74213615	74213337	ID=MS.gene01145.t1.exon3;Parent=MS.gene01145.t1
chr2.1	CDS	74213337	74213615	74213337	ID=cds.MS.gene01145.t1;Parent=MS.gene01145.t1

Gene Sequence

>MS.gene01145

ATGGAGCATAAAAAAGACATAAGTAAAGTGTGACCGAAAAATTCTCTCTACCAAAATAATAATACATTTTCTTTAGTTCATTTGTCTCTATAATTTCAGGGTTGAAAGTGATCCTAGTTGATGAAAAAAGATTTTGTAACATTGATTTTCCTATCCCTAAAGAAACAAATAAAACGATTTAAGTAAATGAATAGATTTTTAGTTTCCAATCATATTAAACAATCAAGTTGATAATTATAAACAAAGAGTTTAATTTCTCAACATAATAATATCTGAAGAGAGTACATTCAAACCGATATCTTTCTGTTGTTGTAGAACGTAATGACTCTCAACCTCCGCTTGAGTGGCCACTGCGGAAGAATATTGCGCTGGGATCTGCCAGGGGGATTGCTTACTTGCATTATAGTTGTGACCCTAAGATTATTCACCGTGATGTGAAAGCTGCAAATATATTGTTAGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTATGCAATGCTTATGGATTACAAAGATACCCATGATACTACTGCTGTCTTCGGTACGATTGGGCATATAGCACCTGAGTATCTCTTAACTGGAAGGTCTTCAGAGAAGACCGATGTTTTTGCATATGGTGTGATGCTTCTTGAACTAATAACTGGACCGAGGGCTTCTGATCTAGCACATCTTGCCAGTGATGATGATGCGATATTGCTTGATTGGGTAGGTTTTCCTTTAACTTTAAATATGCCATTAGTAGTTGAACAATTTTGTTAACCGTATATTTACGGTGATCTTTATTTAAATTCTAACTCCAACACTATGGCATGCATTAATTTCTTCGCGAAATTCTGTATGCAGGTTAAAGGACTTGTTAAAGAGAAGAAGTTTGAAACACTGGTAGATGCAGAGTTAAAGGGAAATTATGATGATGATGAGGTAGAGCAGTTAATCCAAGTTGCTTTACTATGCACACAAGTGTCCCCTATGGAAAGACCTAAGATGTCTGAGATGGTTAGAATGCTAGAAGGCCATGGTTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAAGAGACATACCGACAAGATTTTGGAAACAACCGCATGCATCATCACCCTTCTAATGCAAATTGGATATAG

Protein sequence

>MS.gene01145.t1

MEHKKDIKRNDSQPPLEWPLRKNIALGSARGIAYLHYSCDPKIIHRDVKAANILLDEEFEAVVGDFGYAMLMDYKDTHDTTAVFGTIGHIAPEYLLTGRSSEKTDVFAYGVMLLELITGPRASDLAHLASDDDAILLDWVKGLVKEKKFETLVDAELKGNYDDDEVEQLIQVALLCTQVSPMERPKMSEMVRMLEGHGLAEKWEQWQKEETYRQDFGNNRMHHHPSNANWI