AlfalfaGEDB | MS.gene011483

M. sativa cultivar XinJiangDaYe / MS.gene011483

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011483.t1	XP_019454446.1	79.1	115	24	0	340	454	100	214	5.10E-48	202.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011483.t1	Q9FHB2	57.0	114	49	0	341	454	89	202	2.1e-34	148.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011483.t1	A0A4P1R855	79.1	115	24	0	340	454	100	214	3.7e-48	202.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene011483.t1	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011483.t1	MTR_2g102450	73.504	117	31	338	454	47	163	1.76e-59	199
MS.gene011483.t1	MTR_2g102450	73.504	117	31	338	454	101	217	3.57e-59	199
MS.gene011483.t1	MTR_4g008310	66.087	115	39	340	454	178	292	2.36e-48	168
MS.gene011483.t1	MTR_3g101520	48.039	102	53	353	454	100	201	1.49e-27	110
MS.gene011483.t1	MTR_3g101520	48.039	102	53	353	454	108	209	2.64e-27	109

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011483.t1	AT5G58280	57.018	114	49	341	454	89	202	3.13e-36	135
MS.gene011483.t1	AT5G58280	57.018	114	49	341	454	121	234	4.56e-36	135
MS.gene011483.t1	AT5G58280	57.018	114	49	341	454	122	235	4.96e-36	135
MS.gene011483.t1	AT3G19184	49.020	102	52	353	454	104	205	7.36e-24	101
MS.gene011483.t1	AT3G19184	49.020	102	52	353	454	104	205	9.55e-24	100
MS.gene011483.t1	AT5G42700	46.535	101	54	354	454	60	160	4.34e-23	96.7
MS.gene011483.t1	AT5G42700	46.535	101	54	354	454	105	205	1.04e-22	96.7

Showing 1 to 7 of 7 entries

Previous1Next

Find 75 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAAGAAACCACTT+CGG	0.646435	8.2:+21510600	None:intergenic
AACAAACTTCATGAAGAGAT+TGG	0.401008	8.2:+21510240	None:intergenic
AACAACAAAGAACTCGTGCT+TGG	0.497832	8.2:-21507988	MS.gene011483:CDS
AACAGCTAAAACCATGAGAC+CGG	0.566641	8.2:+21507900	None:intergenic
AACCTCTGTTGACTTCGTAT+TGG	0.383716	8.2:+21510366	None:intergenic
AACGAAACGCATGTGAATCC+AGG	0.523315	8.2:+21509824	None:intergenic
AAGTCAATGGTCCGGTCTCA+TGG	0.512045	8.2:-21507911	MS.gene011483:CDS
AATATTAGTAACATGGCTAT+TGG	0.329071	8.2:-21508061	MS.gene011483:intron
AATTGCTGGTATAACAGATT+TGG	0.305663	8.2:+21510540	None:intergenic
ACAAAGAACTCGTGCTTGGA+AGG	0.515051	8.2:-21507984	MS.gene011483:CDS

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAAACTTCATGAAGAGAT+TGG	+	chr8.2:21508029-21508048	None:intergenic	30.0%
AACATGATTATGAACAATCG+TGG	-	chr8.2:21509260-21509279	MS.gene011483:intron	30.0%
AATTAAGCAAGCAAGTTGTT+GGG	+	chr8.2:21510117-21510136	None:intergenic	30.0%
AATTGCTGGTATAACAGATT+TGG	+	chr8.2:21507729-21507748	None:intergenic	30.0%
ACATACCAGTCCATATTTAT+AGG	+	chr8.2:21509027-21509046	None:intergenic	30.0%
ATATTACAACCTTCAATTGC+TGG	+	chr8.2:21507743-21507762	None:intergenic	30.0%
GAAGGTTGTAATATCAAGAT+TGG	-	chr8.2:21507749-21507768	MS.gene011483:intron	30.0%
GAGTATGATGTTGTCTATAT+TGG	-	chr8.2:21510627-21510646	MS.gene011483:CDS	30.0%
GTGTTGAGTTTATGAGAATT+CGG	+	chr8.2:21509135-21509154	None:intergenic	30.0%
TAAGTCCTATAAATATGGAC+TGG	-	chr8.2:21509019-21509038	MS.gene011483:intron	30.0%

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	21507557	21510731	21507557	ID=MS.gene011483
chr8.2	mRNA	21507557	21510731	21507557	ID=MS.gene011483.t1;Parent=MS.gene011483
chr8.2	exon	21509734	21510731	21509734	ID=MS.gene011483.t1.exon1;Parent=MS.gene011483.t1
chr8.2	CDS	21509734	21510731	21509734	ID=cds.MS.gene011483.t1;Parent=MS.gene011483.t1
chr8.2	exon	21507892	21508075	21507892	ID=MS.gene011483.t1.exon2;Parent=MS.gene011483.t1
chr8.2	CDS	21507892	21508075	21507892	ID=cds.MS.gene011483.t1;Parent=MS.gene011483.t1
chr8.2	exon	21507557	21507739	21507557	ID=MS.gene011483.t1.exon3;Parent=MS.gene011483.t1
chr8.2	CDS	21507557	21507739	21507557	ID=cds.MS.gene011483.t1;Parent=MS.gene011483.t1

Gene Sequence

>MS.gene011483

ATGACATACTCCATTGTTTGTCATCTATGGAAGATATCAAAGGCTGAAAAGAAGTTTTCGCCATTACCGCCACTTCGGAAACCACCGCAAGATTCTACGGTTCTCTCAACCGAAGTGGTTTCTTTCAATTTTGGTAGTTTTAATTCAGAAATTGTTCCGATCATGTCAACCAAATCTGTTATACCAGCAATTGAAGGTTGTAATATCAAGATTGGTGAAATCTCATGTGTTTTGAACGATCATGTTTCTGCATCATCAGTATTGTATGGGAAAGTTCCTGTTTCTGCATCATCAGTAGTGTCTGCAAATGATTCTTCTGATTCTTTCGATTTCACATTTGAATCCAATACGAAGTCAACAGAGGTTGTTACGGAAGATCAAGAACCACAGAGTTTTCGAGTTGCTTCCGCTGTTTTCAGTTTCGTCATCGCAAATCAATTCCGCGGTGATAATTTCTCCAAGGTTCTAACCAATCTCTTCATGAAGTTTGTTAACATTTTCAGAATTGTAATTTCAGCACCGCCTTGGGTCGCCGGAGGTGATGGTTATTCTCCATTGATTTTCGATCCCGGCGGTGTTGCCATACCTCTCTTCATCGCGACAGTTCCTGGTTCGATAAATTTGATTGAGAATACGTTTCTTGCTATTTTCGTGTTTGGAATTGATTTTTCAGAATTGCATTTACAGAAGAACCTTTTCAGAATCAAGTTTGAAGAAAACGCATTTCAAAAGCACGTTTGTAACAAGCTATTTTGGTTGAAATCGCGTTTGCAGAATTTCCTTTTAGAATCGCGTTTGAAGAAGGCGCATTTGAGAAGCAACTTTTGTTCATTCTTTAACGCTTTGATTATGTGCAAAATCGTTTTTGGAGAATTATTTTCTGTTCCTGGATTCACATGCGTTTCGTTTTTGTGGAGAATCACAGATGCGTGTTTTAGAAAGTTGTTCTGCAAAAACTGTTTTGCAAAAGTGCTTTTTGGAAAAGCTGTTTTGGAAAAGTGCGTTTTGGCTAAGTTCTTTTTGGTTCAGACGAGTTTTATCCTGCTTGCATAATCACGTTTTGAGAAGCTATTTGCAGTTTTTAGAATTGGTGTTATCGTTCTGTGTTCTTTCGCAGCCTTATGCATTCCTCAGTTTCTCAGGAAGGTGCTGCTTGCTGAACTTCTCATTTGGTCTTGGGCCTCTTCAGTCTGCTGGATTCTACCTTGGGCATCTTTTCATTTCATATCAGCTTATTTGTTTTTACTAGTTCACACTCCCTATTTCCCTTAGTCCTTGTAGTATGCAAATTTCAATTGTACTTTCATTGTATTCCAAACTCAAATTGGTGAATTTCTCCATTTTGAGTTTGAGGGAGGCTGTTAAGATTCATAGGATTTAGTGTGTTAATTAGGATTAGTGAATATTTAGTTACAAGTTAGTTAGTGGAGTTTGAAGTTAGTTACACAATAGGTTAGTCCAATAAGTCCTATAAATATGGACTGGTATGTACACATTTTATATCTTTTGATCAAAATGTTTCTTTGATAATCTTTTCTCAATAAAAGCCTTATGGCTCTTTTTCGTTCTAATTCTCCGAATTCTCATAAACTCAACACGAATTGCCCTTGTGAAGTCATGTACGGATGACAAATCAAACTGGAGTCAAGCATTTCTTTGATAAAATGTTTGTTCACCTCATTGTATTTTGTTTGATCATGTTGAACATGATTATGAACAATCGTGGTTTTGACGCAAATAGAGAAAATGTGATTAGGTCATGTTTCAACACTAGCAATAGGTACACTGGCAATACCTATTTTCTTATTGCCGAGATAGGGGAATAAGTGGAGAAGTAATTAGAACATGATGTCATATGGTCAATGTCACCGGAATCTAAAATCCAAAAGAGGGTACAAGGGTTTTTTGAAACATTAAACGTCTATGAAGCACAAACACTCCTCATATTAGGTGTGTCCCAATCTCGGACACACGTCGGTGTCCGACACCGACACCTATGATTACATTGAATTATATTATTTTCTCAAATTATTATCGGTGTCGGTGTGTCTGTGTTGTGTCTGCGATCGTGTTTCATAGGTAAACATACTTGAATACGCCAAAGTACATGTACTTAATGATTTTTCCGGAACTGTTACGCAACAGTCTCATCTTTGAACGAGGTTAGCAGTCCAAATGGATTTAGAACAGTGGTGGTCAACACTGGTCAAAACGGTCAACGCTGGCAAACTCTGGTCAAAGGTGGCCAACGAGGCTCTAGACATCACAAAGGTGCCCAGTCAAGCTTAAACCATGTATGTATGACAGCACAAGGTGCCCAATCAAGCTTAAACCATATATGTCAGCACAAGGTGCCCAACGAATATTACATGATTAACTGAGTGTTTGGTTTGACATTCCTCTCATCTTTTTTCGCGTTTTAAGACAATTTTGCCGTGCATAGAGAGAAGCTACACATTGTAACTTCAAGGTGGACACATTCACTAGGAGCTGCTGCCATGTTAAAAATAGTGTGAAAAATAGAGACTGTTTTTGAGTGTGCTTGAATTGCATAGCACCCAACAACTTGCTTGCTTAATTCATACATATACAAGGGAGCATTTATGCTAGCACTACTTTCTAAGATACATTGACCTTGTTCTACTTGAAATATTAGTAACATGGCTATTGGACTCTTTAGTTACGTTGCAAGGCCAATAGATGAAATCGAAAAAGCTACAAAACAACAAAGAACTCGTGCTTGGAAGGCTGCAGAGGAACTTCAAATCAATTTGCAGTCTACGAATCCATCATTTATCAAGTCAATGGTCCGGTCTCATGGTTTTAGCTGTTTTTGGTTGGTATGTTTCTGTTCAGAATATTTTTCTATATGGCCTGCACATTCTTATCCATGTTTTGTACATTCTTTTTAAGTTTAGATTATTGATTAATATACATCTAACACATGACATATTTTCCAAAATATTATATTTATTTGTCTTTATTCTTCCAGGGTCTTCCTAGTAGGTTTTGTGAGGAACATCTTCCAAAAACAGTGCATAACATGATTTTAGAGGATGAAAATGGCTCGGAGTATGATGTTGTCTATATTGGCAGTAGAAGTGGGCTAAGTGGTGGCTGGAGAGGATTTGCATTGGAACATAAATTGGATGATGGTGATGCACTTGTTTTTTAA

Protein sequence

>MS.gene011483.t1

MTYSIVCHLWKISKAEKKFSPLPPLRKPPQDSTVLSTEVVSFNFGSFNSEIVPIMSTKSVIPAIEGCNIKIGEISCVLNDHVSASSVLYGKVPVSASSVVSANDSSDSFDFTFESNTKSTEVVTEDQEPQSFRVASAVFSFVIANQFRGDNFSKVLTNLFMKFVNIFRIVISAPPWVAGGDGYSPLIFDPGGVAIPLFIATVPGSINLIENTFLAIFVFGIDFSELHLQKNLFRIKFEENAFQKHVCNKLFWLKSRLQNFLLESRLKKAHLRSNFCSFFNALIMCKIVFGELFSVPGFTCVSFLWRITDACFRKLFCKNCFAKVLFGKAVLENNMAIGLFSYVARPIDEIEKATKQQRTRAWKAAEELQINLQSTNPSFIKSMVRSHGFSCFWLGLPSRFCEEHLPKTVHNMILEDENGSEYDVVYIGSRSGLSGGWRGFALEHKLDDGDALVF