Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011483.t1 | XP_019454446.1 | 79.1 | 115 | 24 | 0 | 340 | 454 | 100 | 214 | 5.10E-48 | 202.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011483.t1 | Q9FHB2 | 57.0 | 114 | 49 | 0 | 341 | 454 | 89 | 202 | 2.1e-34 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011483.t1 | A0A4P1R855 | 79.1 | 115 | 24 | 0 | 340 | 454 | 100 | 214 | 3.7e-48 | 202.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011483.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011483.t1 | MTR_2g102450 | 73.504 | 117 | 31 | 0 | 338 | 454 | 47 | 163 | 1.76e-59 | 199 |
| MS.gene011483.t1 | MTR_2g102450 | 73.504 | 117 | 31 | 0 | 338 | 454 | 101 | 217 | 3.57e-59 | 199 |
| MS.gene011483.t1 | MTR_4g008310 | 66.087 | 115 | 39 | 0 | 340 | 454 | 178 | 292 | 2.36e-48 | 168 |
| MS.gene011483.t1 | MTR_3g101520 | 48.039 | 102 | 53 | 0 | 353 | 454 | 100 | 201 | 1.49e-27 | 110 |
| MS.gene011483.t1 | MTR_3g101520 | 48.039 | 102 | 53 | 0 | 353 | 454 | 108 | 209 | 2.64e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011483.t1 | AT5G58280 | 57.018 | 114 | 49 | 0 | 341 | 454 | 89 | 202 | 3.13e-36 | 135 |
| MS.gene011483.t1 | AT5G58280 | 57.018 | 114 | 49 | 0 | 341 | 454 | 121 | 234 | 4.56e-36 | 135 |
| MS.gene011483.t1 | AT5G58280 | 57.018 | 114 | 49 | 0 | 341 | 454 | 122 | 235 | 4.96e-36 | 135 |
| MS.gene011483.t1 | AT3G19184 | 49.020 | 102 | 52 | 0 | 353 | 454 | 104 | 205 | 7.36e-24 | 101 |
| MS.gene011483.t1 | AT3G19184 | 49.020 | 102 | 52 | 0 | 353 | 454 | 104 | 205 | 9.55e-24 | 100 |
| MS.gene011483.t1 | AT5G42700 | 46.535 | 101 | 54 | 0 | 354 | 454 | 60 | 160 | 4.34e-23 | 96.7 |
| MS.gene011483.t1 | AT5G42700 | 46.535 | 101 | 54 | 0 | 354 | 454 | 105 | 205 | 1.04e-22 | 96.7 |
Find 75 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGCATTGGAACATAAAT+TGG | 0.189949 | 8.2:-21507583 | MS.gene011483:CDS |
| ACTCCATTGTTTGTCATCTA+TGG | 0.244370 | 8.2:-21510702 | MS.gene011483:CDS |
| CTCTTCATCGCGACAGTTCC+TGG | 0.274379 | 8.2:-21510121 | MS.gene011483:CDS |
| TCTTCAAACGCGATTCTAAA+AGG | 0.282311 | 8.2:+21509930 | None:intergenic |
| ACGTTTGTAACAAGCTATTT+TGG | 0.283460 | 8.2:-21509976 | MS.gene011483:CDS |
| GAAGTGGTTTCTTTCAATTT+TGG | 0.299909 | 8.2:-21510598 | MS.gene011483:CDS |
| AATTGCTGGTATAACAGATT+TGG | 0.305663 | 8.2:+21510540 | None:intergenic |
| AATATTAGTAACATGGCTAT+TGG | 0.329071 | 8.2:-21508061 | MS.gene011483:intron |
| ATATTACAACCTTCAATTGC+TGG | 0.347525 | 8.2:+21510526 | None:intergenic |
| CTTCAAACTTGATTCTGAAA+AGG | 0.376306 | 8.2:+21510017 | None:intergenic |
| AACCTCTGTTGACTTCGTAT+TGG | 0.383716 | 8.2:+21510366 | None:intergenic |
| TCTGCATCATCAGTATTGTA+TGG | 0.385294 | 8.2:-21510463 | MS.gene011483:CDS |
| TCTTCCAGGGTCTTCCTAGT+AGG | 0.396253 | 8.2:-21507725 | MS.gene011483:intron |
| TGTAATTTCAGCACCGCCTT+GGG | 0.396712 | 8.2:-21510203 | MS.gene011483:CDS |
| ACCATTGACTTGATAAATGA+TGG | 0.398569 | 8.2:+21507923 | None:intergenic |
| AACAAACTTCATGAAGAGAT+TGG | 0.401008 | 8.2:+21510240 | None:intergenic |
| GAAGGTTGTAATATCAAGAT+TGG | 0.414965 | 8.2:-21510517 | MS.gene011483:CDS |
| GAGTATGATGTTGTCTATAT+TGG | 0.436717 | 8.2:-21507639 | MS.gene011483:CDS |
| TTTAGAATCGCGTTTGAAGA+AGG | 0.442453 | 8.2:-21509927 | MS.gene011483:CDS |
| ACTACTGATGATGCAGAAAC+AGG | 0.445399 | 8.2:+21510433 | None:intergenic |
| CCTTGGGTCGCCGGAGGTGA+TGG | 0.459461 | 8.2:-21510187 | MS.gene011483:CDS |
| TCAGCACCGCCTTGGGTCGC+CGG | 0.462434 | 8.2:-21510196 | MS.gene011483:CDS |
| GGTTTCCGAAGTGGCGGTAA+TGG | 0.464086 | 8.2:+21510649 | None:intergenic |
| GAAGAGATTGGTTAGAACCT+TGG | 0.468654 | 8.2:+21510252 | None:intergenic |
| GAAACCACCGCAAGATTCTA+CGG | 0.473483 | 8.2:-21510632 | MS.gene011483:CDS |
| GTCTATATTGGCAGTAGAAG+TGG | 0.481140 | 8.2:-21507627 | MS.gene011483:CDS |
| TCTGTTATACCAGCAATTGA+AGG | 0.481754 | 8.2:-21510535 | MS.gene011483:CDS |
| TTGTAATTTCAGCACCGCCT+TGG | 0.485988 | 8.2:-21510204 | MS.gene011483:CDS |
| AACAACAAAGAACTCGTGCT+TGG | 0.497832 | 8.2:-21507988 | MS.gene011483:CDS |
| TCCATCATTTATCAAGTCAA+TGG | 0.499589 | 8.2:-21507924 | MS.gene011483:CDS |
| TGTTCCTCACAAAACCTACT+AGG | 0.504504 | 8.2:+21507711 | None:intergenic |
| CCGCCGGGATCGAAAATCAA+TGG | 0.511841 | 8.2:+21510157 | None:intergenic |
| AAGTCAATGGTCCGGTCTCA+TGG | 0.512045 | 8.2:-21507911 | MS.gene011483:CDS |
| ACAAAGAACTCGTGCTTGGA+AGG | 0.515051 | 8.2:-21507984 | MS.gene011483:CDS |
| AGAGGTATGGCAACACCGCC+GGG | 0.518862 | 8.2:+21510142 | None:intergenic |
| AACGAAACGCATGTGAATCC+AGG | 0.523315 | 8.2:+21509824 | None:intergenic |
| CTGCATCATCAGTATTGTAT+GGG | 0.523344 | 8.2:-21510462 | MS.gene011483:CDS |
| GACTCTTTAGTTACGTTGCA+AGG | 0.524631 | 8.2:-21508039 | MS.gene011483:CDS |
| GAGAGGTATGGCAACACCGC+CGG | 0.525360 | 8.2:+21510141 | None:intergenic |
| TTTCGCCATTACCGCCACTT+CGG | 0.533713 | 8.2:-21510654 | MS.gene011483:CDS |
| ACAGATTTGGTTGACATGAT+CGG | 0.538963 | 8.2:+21510553 | None:intergenic |
| GAAGTGGGCTAAGTGGTGGC+TGG | 0.540038 | 8.2:-21507611 | MS.gene011483:CDS |
| GGGCTAAGTGGTGGCTGGAG+AGG | 0.544907 | 8.2:-21507606 | MS.gene011483:CDS |
| CATTTATCAAGTCAATGGTC+CGG | 0.559658 | 8.2:-21507919 | MS.gene011483:CDS |
| CCATCACCTCCGGCGACCCA+AGG | 0.563505 | 8.2:+21510187 | None:intergenic |
| AACAGCTAAAACCATGAGAC+CGG | 0.566641 | 8.2:+21507900 | None:intergenic |
| TCAATCAAATTTATCGAACC+AGG | 0.571109 | 8.2:+21510103 | None:intergenic |
| TTTAGAGGATGAAAATGGCT+CGG | 0.571858 | 8.2:-21507661 | MS.gene011483:CDS |
| TCGTGCTTGGAAGGCTGCAG+AGG | 0.573588 | 8.2:-21507975 | MS.gene011483:CDS |
| TCTATATTGGCAGTAGAAGT+GGG | 0.573838 | 8.2:-21507626 | MS.gene011483:CDS |
| TTGGAACATAAATTGGATGA+TGG | 0.579994 | 8.2:-21507576 | MS.gene011483:CDS |
| CCGCGGTGATAATTTCTCCA+AGG | 0.580000 | 8.2:-21510269 | MS.gene011483:CDS |
| TCTTGCGGTGGTTTCCGAAG+TGG | 0.583804 | 8.2:+21510640 | None:intergenic |
| GGCAGTAGAAGTGGGCTAAG+TGG | 0.585137 | 8.2:-21507618 | MS.gene011483:CDS |
| CTTCCATAGATGACAAACAA+TGG | 0.590163 | 8.2:+21510699 | None:intergenic |
| TACTTGAAATATTAGTAACA+TGG | 0.593655 | 8.2:-21508068 | MS.gene011483:intron |
| TGGAGAATAACCATCACCTC+CGG | 0.593911 | 8.2:+21510177 | None:intergenic |
| GAAGTCAACAGAGGTTGTTA+CGG | 0.595193 | 8.2:-21510359 | MS.gene011483:CDS |
| TGCGGTGGTTTCCGAAGTGG+CGG | 0.596746 | 8.2:+21510643 | None:intergenic |
| TACGGTTCTCTCAACCGAAG+TGG | 0.598882 | 8.2:-21510614 | MS.gene011483:CDS |
| TGGCTGGAGAGGATTTGCAT+TGG | 0.612968 | 8.2:-21507595 | MS.gene011483:CDS |
| GGAACTGTCGCGATGAAGAG+AGG | 0.620953 | 8.2:+21510124 | None:intergenic |
| TGTCGCGATGAAGAGAGGTA+TGG | 0.620992 | 8.2:+21510129 | None:intergenic |
| GCACCGCCTTGGGTCGCCGG+AGG | 0.621388 | 8.2:-21510193 | MS.gene011483:CDS |
| TCATCTATGGAAGATATCAA+AGG | 0.637293 | 8.2:-21510689 | MS.gene011483:CDS |
| AAAATTGAAAGAAACCACTT+CGG | 0.646435 | 8.2:+21510600 | None:intergenic |
| GTCATCGCAAATCAATTCCG+CGG | 0.656604 | 8.2:-21510286 | MS.gene011483:CDS |
| GAGAGAACCGTAGAATCTTG+CGG | 0.660091 | 8.2:+21510625 | None:intergenic |
| TCACCTCCGGCGACCCAAGG+CGG | 0.690066 | 8.2:+21510190 | None:intergenic |
| AGTAGAAGTGGGCTAAGTGG+TGG | 0.694572 | 8.2:-21507615 | MS.gene011483:CDS |
| GAAGCAACTCGAAAACTCTG+TGG | 0.700250 | 8.2:+21510325 | None:intergenic |
| AGAACCGTAGAATCTTGCGG+TGG | 0.704902 | 8.2:+21510628 | None:intergenic |
| ATCCAATACGAAGTCAACAG+AGG | 0.713727 | 8.2:-21510368 | MS.gene011483:CDS |
| CCTTGGAGAAATTATCACCG+CGG | 0.771816 | 8.2:+21510269 | None:intergenic |
| GATGACGAAACTGAAAACAG+CGG | 0.772687 | 8.2:+21510303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACAAATAAATATAATATTT+TGG | + | chr8.2:21510516-21510535 | None:intergenic | 10.0% |
| !!! | TTATTTTCTCAAATTATTAT+CGG | - | chr8.2:21509572-21509591 | MS.gene011483:intron | 10.0% |
| !! | ATATAATTCAATGTAATCAT+AGG | + | chr8.2:21509553-21509572 | None:intergenic | 15.0% |
| !! | CTTAATTCATACATATACAA+GGG | - | chr8.2:21510130-21510149 | MS.gene011483:CDS | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | + | chr8.2:21510448-21510467 | None:intergenic | 20.0% |
| !! | TACTTGAAATATTAGTAACA+TGG | - | chr8.2:21510198-21510217 | MS.gene011483:CDS | 20.0% |
| !! | TTAATCATGTAATATTCGTT+GGG | + | chr8.2:21509914-21509933 | None:intergenic | 20.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | - | chr8.2:21510407-21510426 | MS.gene011483:CDS | 20.0% |
| !!! | TTTTCACACTATTTTTAACA+TGG | + | chr8.2:21510056-21510075 | None:intergenic | 20.0% |
| ! | AAAATTGAAAGAAACCACTT+CGG | + | chr8.2:21507669-21507688 | None:intergenic | 25.0% |
| ! | AATATTAGTAACATGGCTAT+TGG | - | chr8.2:21510205-21510224 | MS.gene011483:CDS | 25.0% |
| ! | AATTAGAACATGATGTCATA+TGG | - | chr8.2:21509393-21509412 | MS.gene011483:intron | 25.0% |
| ! | ATATATGGTTTAAGCTTGAT+TGG | + | chr8.2:21509877-21509896 | None:intergenic | 25.0% |
| ! | ATCATTAAGTACATGTACTT+TGG | + | chr8.2:21509658-21509677 | None:intergenic | 25.0% |
| ! | ATTGAAATTTGCATACTACA+AGG | + | chr8.2:21508833-21508852 | None:intergenic | 25.0% |
| ! | ATTGTATTCCAAACTCAAAT+TGG | - | chr8.2:21508862-21508881 | MS.gene011483:intron | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | - | chr8.2:21510683-21510702 | MS.gene011483:CDS | 25.0% |
| ! | CAAATAGAGAAAATGTGATT+AGG | - | chr8.2:21509291-21509310 | MS.gene011483:intron | 25.0% |
| ! | GCTTAATTCATACATATACA+AGG | - | chr8.2:21510129-21510148 | MS.gene011483:CDS | 25.0% |
| ! | GTTAATCATGTAATATTCGT+TGG | + | chr8.2:21509915-21509934 | None:intergenic | 25.0% |
| ! | TAGGATTTAGTGTGTTAATT+AGG | - | chr8.2:21508928-21508947 | MS.gene011483:intron | 25.0% |
| ! | TATATGGTTTAAGCTTGATT+GGG | + | chr8.2:21509876-21509895 | None:intergenic | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | - | chr8.2:21510528-21510547 | MS.gene011483:CDS | 25.0% |
| ! | TCCAATAAGTCCTATAAATA+TGG | - | chr8.2:21509014-21509033 | MS.gene011483:intron | 25.0% |
| ! | TCCATATTTATAGGACTTAT+TGG | + | chr8.2:21509018-21509037 | None:intergenic | 25.0% |
| ! | TGATCAAACAAAATACAATG+AGG | + | chr8.2:21509235-21509254 | None:intergenic | 25.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | - | chr8.2:21510527-21510546 | MS.gene011483:CDS | 25.0% |
| ! | TTTAGTTACAAGTTAGTTAG+TGG | - | chr8.2:21508962-21508981 | MS.gene011483:intron | 25.0% |
| !! | ATTATGTGCAAAATCGTTTT+TGG | - | chr8.2:21508403-21508422 | MS.gene011483:intron | 25.0% |
| !! | CATGTACTTAATGATTTTTC+CGG | - | chr8.2:21509663-21509682 | MS.gene011483:intron | 25.0% |
| !! | CTAATATTTCAAGTAGAACA+AGG | + | chr8.2:21510193-21510212 | None:intergenic | 25.0% |
| !! | TTTGAAGTTAGTTACACAAT+AGG | - | chr8.2:21508987-21509006 | MS.gene011483:intron | 25.0% |
| !! | TTTTCTCAATAAAAGCCTTA+TGG | - | chr8.2:21509089-21509108 | MS.gene011483:intron | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | - | chr8.2:21510600-21510619 | MS.gene011483:CDS | 25.0% |
| !!! | CTATTTGCAGTTTTTAGAAT+TGG | - | chr8.2:21508625-21508644 | MS.gene011483:intron | 25.0% |
| AACAAACTTCATGAAGAGAT+TGG | + | chr8.2:21508029-21508048 | None:intergenic | 30.0% | |
| AACATGATTATGAACAATCG+TGG | - | chr8.2:21509260-21509279 | MS.gene011483:intron | 30.0% | |
| AATTAAGCAAGCAAGTTGTT+GGG | + | chr8.2:21510117-21510136 | None:intergenic | 30.0% | |
| AATTGCTGGTATAACAGATT+TGG | + | chr8.2:21507729-21507748 | None:intergenic | 30.0% | |
| ACATACCAGTCCATATTTAT+AGG | + | chr8.2:21509027-21509046 | None:intergenic | 30.0% | |
| ATATTACAACCTTCAATTGC+TGG | + | chr8.2:21507743-21507762 | None:intergenic | 30.0% | |
| GAAGGTTGTAATATCAAGAT+TGG | - | chr8.2:21507749-21507768 | MS.gene011483:intron | 30.0% | |
| GAGTATGATGTTGTCTATAT+TGG | - | chr8.2:21510627-21510646 | MS.gene011483:CDS | 30.0% | |
| GTGTTGAGTTTATGAGAATT+CGG | + | chr8.2:21509135-21509154 | None:intergenic | 30.0% | |
| TAAGTCCTATAAATATGGAC+TGG | - | chr8.2:21509019-21509038 | MS.gene011483:intron | 30.0% | |
| TACATGATTAACTGAGTGTT+TGG | - | chr8.2:21509923-21509942 | MS.gene011483:CDS | 30.0% | |
| TATCTCGGCAATAAGAAAAT+AGG | + | chr8.2:21509354-21509373 | None:intergenic | 30.0% | |
| TCAATCAAATTTATCGAACC+AGG | + | chr8.2:21508166-21508185 | None:intergenic | 30.0% | |
| TCATCTATGGAAGATATCAA+AGG | - | chr8.2:21507577-21507596 | MS.gene011483:CDS | 30.0% | |
| TCCATCATTTATCAAGTCAA+TGG | - | chr8.2:21510342-21510361 | MS.gene011483:CDS | 30.0% | |
| TCTCAAATTATTATCGGTGT+CGG | - | chr8.2:21509578-21509597 | MS.gene011483:intron | 30.0% | |
| TTCAATGTAATCATAGGTGT+CGG | + | chr8.2:21509547-21509566 | None:intergenic | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | - | chr8.2:21510690-21510709 | MS.gene011483:CDS | 30.0% | |
| ! | ACGTTTGTAACAAGCTATTT+TGG | - | chr8.2:21508290-21508309 | MS.gene011483:intron | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | - | chr8.2:21510590-21510609 | MS.gene011483:CDS | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | + | chr8.2:21510585-21510604 | None:intergenic | 30.0% |
| ! | ATTTTCTTATTGCCGAGATA+GGG | - | chr8.2:21509354-21509373 | MS.gene011483:intron | 30.0% |
| ! | CTCTTTTGGATTTTAGATTC+CGG | + | chr8.2:21509428-21509447 | None:intergenic | 30.0% |
| ! | CTTCAAACTTGATTCTGAAA+AGG | + | chr8.2:21508252-21508271 | None:intergenic | 30.0% |
| ! | GAAATTCACCAATTTGAGTT+TGG | + | chr8.2:21508873-21508892 | None:intergenic | 30.0% |
| ! | GAAGTGGTTTCTTTCAATTT+TGG | - | chr8.2:21507668-21507687 | MS.gene011483:CDS | 30.0% |
| ! | GGAATCTAAAATCCAAAAGA+GGG | - | chr8.2:21509427-21509446 | MS.gene011483:intron | 30.0% |
| ! | TATTTTCTTATTGCCGAGAT+AGG | - | chr8.2:21509353-21509372 | MS.gene011483:intron | 30.0% |
| !! | ACCATTGACTTGATAAATGA+TGG | + | chr8.2:21510346-21510365 | None:intergenic | 30.0% |
| !!! | ATTTCTCCATTTTGAGTTTG+AGG | - | chr8.2:21508888-21508907 | MS.gene011483:intron | 30.0% |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | + | chr8.2:21510253-21510272 | None:intergenic | 30.0% |
| !!! | TGTTTTGCAAAAGTGCTTTT+TGG | - | chr8.2:21508514-21508533 | MS.gene011483:intron | 30.0% |
| !!! | TTTCTCCATTTTGAGTTTGA+GGG | - | chr8.2:21508889-21508908 | MS.gene011483:intron | 30.0% |
| !!! | TTTCTTGCTATTTTCGTGTT+TGG | - | chr8.2:21508193-21508212 | MS.gene011483:intron | 30.0% |
| AAAACGCGAAAAAAGATGAG+AGG | + | chr8.2:21509958-21509977 | None:intergenic | 35.0% | |
| AAACATGGATAAGAATGTGC+AGG | + | chr8.2:21510433-21510452 | None:intergenic | 35.0% | |
| AAACCATATATGTCAGCACA+AGG | - | chr8.2:21509886-21509905 | MS.gene011483:CDS | 35.0% | |
| ACTCCATTGTTTGTCATCTA+TGG | - | chr8.2:21507564-21507583 | MS.gene011483:CDS | 35.0% | |
| AGCTACACATTGTAACTTCA+AGG | - | chr8.2:21510005-21510024 | MS.gene011483:CDS | 35.0% | |
| ATACATGGTTTAAGCTTGAC+TGG | + | chr8.2:21509835-21509854 | None:intergenic | 35.0% | |
| ATGAAATGAAAAGATGCCCA+AGG | + | chr8.2:21508763-21508782 | None:intergenic | 35.0% | |
| CATGTTTCAACACTAGCAAT+AGG | - | chr8.2:21509315-21509334 | MS.gene011483:intron | 35.0% | |
| CATTTATCAAGTCAATGGTC+CGG | - | chr8.2:21510347-21510366 | MS.gene011483:CDS | 35.0% | |
| CTGCATCATCAGTATTGTAT+GGG | - | chr8.2:21507804-21507823 | MS.gene011483:intron | 35.0% | |
| CTTCCATAGATGACAAACAA+TGG | + | chr8.2:21507570-21507589 | None:intergenic | 35.0% | |
| GAATTAAGCAAGCAAGTTGT+TGG | + | chr8.2:21510118-21510137 | None:intergenic | 35.0% | |
| TACAAGGACTAAGGGAAATA+GGG | + | chr8.2:21508817-21508836 | None:intergenic | 35.0% | |
| TACACATTGTAACTTCAAGG+TGG | - | chr8.2:21510008-21510027 | MS.gene011483:CDS | 35.0% | |
| TACATGGTTTAAGCTTGACT+GGG | + | chr8.2:21509834-21509853 | None:intergenic | 35.0% | |
| TAGAACGAAAAAGAGCCATA+AGG | + | chr8.2:21509107-21509126 | None:intergenic | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | - | chr8.2:21510640-21510659 | MS.gene011483:CDS | 35.0% | |
| TCTGCATCATCAGTATTGTA+TGG | - | chr8.2:21507803-21507822 | MS.gene011483:intron | 35.0% | |
| TCTGTTATACCAGCAATTGA+AGG | - | chr8.2:21507731-21507750 | MS.gene011483:intron | 35.0% | |
| TCTTCAAACGCGATTCTAAA+AGG | + | chr8.2:21508339-21508358 | None:intergenic | 35.0% | |
| TTGCATACTACAAGGACTAA+GGG | + | chr8.2:21508825-21508844 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | - | chr8.2:21510605-21510624 | MS.gene011483:CDS | 35.0% | |
| TTTGCATACTACAAGGACTA+AGG | + | chr8.2:21508826-21508845 | None:intergenic | 35.0% | |
| ! | AAAATCCAAAAGAGGGTACA+AGG | - | chr8.2:21509434-21509453 | MS.gene011483:intron | 35.0% |
| ! | AAATCCAAAAGAGGGTACAA+GGG | - | chr8.2:21509435-21509454 | MS.gene011483:intron | 35.0% |
| ! | AAATGGATTTAGAACAGTGG+TGG | - | chr8.2:21509730-21509749 | MS.gene011483:intron | 35.0% |
| ! | ACAGATTTGGTTGACATGAT+CGG | + | chr8.2:21507716-21507735 | None:intergenic | 35.0% |
| ! | ACCACTGTTCTAAATCCATT+TGG | + | chr8.2:21509731-21509750 | None:intergenic | 35.0% |
| ! | CGGAATCTAAAATCCAAAAG+AGG | - | chr8.2:21509426-21509445 | MS.gene011483:intron | 35.0% |
| ! | GGAGAATTATTTTCTGTTCC+TGG | - | chr8.2:21508424-21508443 | MS.gene011483:intron | 35.0% |
| ! | TCCAAATGGATTTAGAACAG+TGG | - | chr8.2:21509727-21509746 | MS.gene011483:intron | 35.0% |
| ! | TGAACTTCTCATTTGGTCTT+GGG | - | chr8.2:21508714-21508733 | MS.gene011483:intron | 35.0% |
| ! | TTTAGAATCGCGTTTGAAGA+AGG | - | chr8.2:21508339-21508358 | MS.gene011483:intron | 35.0% |
| ! | TTTTCTTATTGCCGAGATAG+GGG | - | chr8.2:21509355-21509374 | MS.gene011483:intron | 35.0% |
| !! | GCTTTTTGGAAAAGCTGTTT+TGG | - | chr8.2:21508528-21508547 | MS.gene011483:intron | 35.0% |
| !!! | CGTTTTGGCTAAGTTCTTTT+TGG | - | chr8.2:21508558-21508577 | MS.gene011483:intron | 35.0% |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | - | chr8.2:21510371-21510390 | MS.gene011483:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | - | chr8.2:21510375-21510394 | MS.gene011483:CDS | 35.0% |
| !!! | TGTTTTGGAAAAGTGCGTTT+TGG | - | chr8.2:21508543-21508562 | MS.gene011483:intron | 35.0% |
| AACAACAAAGAACTCGTGCT+TGG | - | chr8.2:21510278-21510297 | MS.gene011483:CDS | 40.0% | |
| AACACTAGCAATAGGTACAC+TGG | - | chr8.2:21509323-21509342 | MS.gene011483:intron | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | + | chr8.2:21510369-21510388 | None:intergenic | 40.0% | |
| AACAGTCTCATCTTTGAACG+AGG | - | chr8.2:21509697-21509716 | MS.gene011483:intron | 40.0% | |
| ATCCAATACGAAGTCAACAG+AGG | - | chr8.2:21507898-21507917 | MS.gene011483:CDS | 40.0% | |
| ATCCGTACATGACTTCACAA+GGG | + | chr8.2:21509164-21509183 | None:intergenic | 40.0% | |
| ATTGGGACACACCTAATATG+AGG | + | chr8.2:21509499-21509518 | None:intergenic | 40.0% | |
| CAAAACGTGATTATGCAAGC+AGG | + | chr8.2:21508600-21508619 | None:intergenic | 40.0% | |
| CATGTATGTATGACAGCACA+AGG | - | chr8.2:21509848-21509867 | MS.gene011483:CDS | 40.0% | |
| CTACAAGGACTAAGGGAAAT+AGG | + | chr8.2:21508818-21508837 | None:intergenic | 40.0% | |
| CTGAACTTCTCATTTGGTCT+TGG | - | chr8.2:21508713-21508732 | MS.gene011483:intron | 40.0% | |
| CTTGTGCTGTCATACATACA+TGG | + | chr8.2:21509850-21509869 | None:intergenic | 40.0% | |
| GAAGTCAACAGAGGTTGTTA+CGG | - | chr8.2:21507907-21507926 | MS.gene011483:CDS | 40.0% | |
| GACTCTTTAGTTACGTTGCA+AGG | - | chr8.2:21510227-21510246 | MS.gene011483:CDS | 40.0% | |
| GAGAAACTGAGGAATGCATA+AGG | + | chr8.2:21508677-21508696 | None:intergenic | 40.0% | |
| GATGACGAAACTGAAAACAG+CGG | + | chr8.2:21507966-21507985 | None:intergenic | 40.0% | |
| GCACAAACACTCCTCATATT+AGG | - | chr8.2:21509485-21509504 | MS.gene011483:intron | 40.0% | |
| GTACGGATGACAAATCAAAC+TGG | - | chr8.2:21509176-21509195 | MS.gene011483:intron | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | - | chr8.2:21510639-21510658 | MS.gene011483:CDS | 40.0% | |
| TATGCATTCCTCAGTTTCTC+AGG | - | chr8.2:21508677-21508696 | MS.gene011483:intron | 40.0% | |
| TATTAGGTGTGTCCCAATCT+CGG | - | chr8.2:21509501-21509520 | MS.gene011483:intron | 40.0% | |
| TGTCATATGGTCAATGTCAC+CGG | - | chr8.2:21509406-21509425 | MS.gene011483:intron | 40.0% | |
| TGTTCCTCACAAAACCTACT+AGG | + | chr8.2:21510558-21510577 | None:intergenic | 40.0% | |
| ! | AAAACCCTTGTACCCTCTTT+TGG | + | chr8.2:21509442-21509461 | None:intergenic | 40.0% |
| ! | ACTACTGATGATGCAGAAAC+AGG | + | chr8.2:21507836-21507855 | None:intergenic | 40.0% |
| ! | GAAGAGATTGGTTAGAACCT+TGG | + | chr8.2:21508017-21508036 | None:intergenic | 40.0% |
| ! | TGCTTGCTGAACTTCTCATT+TGG | - | chr8.2:21508707-21508726 | MS.gene011483:intron | 40.0% |
| !! | AACCTCTGTTGACTTCGTAT+TGG | + | chr8.2:21507903-21507922 | None:intergenic | 40.0% |
| !! | TCACATGCGTTTCGTTTTTG+TGG | - | chr8.2:21508449-21508468 | MS.gene011483:intron | 40.0% |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | - | chr8.2:21510551-21510570 | MS.gene011483:CDS | 40.0% |
| !!! | TCTCCATTGATTTTCGATCC+CGG | - | chr8.2:21508106-21508125 | MS.gene011483:intron | 40.0% |
| AAAACCTACTAGGAAGACCC+TGG | + | chr8.2:21510548-21510567 | None:intergenic | 45.0% | |
| AACGAAACGCATGTGAATCC+AGG | + | chr8.2:21508445-21508464 | None:intergenic | 45.0% | |
| AACGAGGTTAGCAGTCCAAA+TGG | - | chr8.2:21509713-21509732 | MS.gene011483:intron | 45.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | - | chr8.2:21510282-21510301 | MS.gene011483:CDS | 45.0% | |
| AGACTGTTGCGTAACAGTTC+CGG | + | chr8.2:21509685-21509704 | None:intergenic | 45.0% | |
| AGCCTCCCTCAAACTCAAAA+TGG | + | chr8.2:21508897-21508916 | None:intergenic | 45.0% | |
| AGTCTGCTGGATTCTACCTT+GGG | - | chr8.2:21508744-21508763 | MS.gene011483:intron | 45.0% | |
| CATCCGTACATGACTTCACA+AGG | + | chr8.2:21509165-21509184 | None:intergenic | 45.0% | |
| CATTCCTCAGTTTCTCAGGA+AGG | - | chr8.2:21508681-21508700 | MS.gene011483:intron | 45.0% | |
| CCTTGGAGAAATTATCACCG+CGG | + | chr8.2:21508000-21508019 | None:intergenic | 45.0% | |
| CTCCACTTATTCCCCTATCT+CGG | + | chr8.2:21509369-21509388 | None:intergenic | 45.0% | |
| GAAACCACCGCAAGATTCTA+CGG | - | chr8.2:21507634-21507653 | MS.gene011483:CDS | 45.0% | |
| GAAGCAACTCGAAAACTCTG+TGG | + | chr8.2:21507944-21507963 | None:intergenic | 45.0% | |
| GAGAGAACCGTAGAATCTTG+CGG | + | chr8.2:21507644-21507663 | None:intergenic | 45.0% | |
| GGGAGGCTGTTAAGATTCAT+AGG | - | chr8.2:21508909-21508928 | MS.gene011483:intron | 45.0% | |
| GTCATCGCAAATCAATTCCG+CGG | - | chr8.2:21507980-21507999 | MS.gene011483:CDS | 45.0% | |
| GTGGTCAACACTGGTCAAAA+CGG | - | chr8.2:21509749-21509768 | MS.gene011483:CDS | 45.0% | |
| GTGTAGCTTCTCTCTATGCA+CGG | + | chr8.2:21509993-21510012 | None:intergenic | 45.0% | |
| TAGAATCCAGCAGACTGAAG+AGG | + | chr8.2:21508740-21508759 | None:intergenic | 45.0% | |
| TCAAGGTGGACACATTCACT+AGG | - | chr8.2:21510022-21510041 | MS.gene011483:CDS | 45.0% | |
| TGCCCTTGTGAAGTCATGTA+CGG | - | chr8.2:21509159-21509178 | MS.gene011483:intron | 45.0% | |
| TGGAGAATAACCATCACCTC+CGG | + | chr8.2:21508092-21508111 | None:intergenic | 45.0% | |
| TGTAATTTCAGCACCGCCTT+GGG | - | chr8.2:21508063-21508082 | MS.gene011483:intron | 45.0% | |
| TGTCTGCGATCGTGTTTCAT+AGG | - | chr8.2:21509614-21509633 | MS.gene011483:intron | 45.0% | |
| TTGTAATTTCAGCACCGCCT+TGG | - | chr8.2:21508062-21508081 | MS.gene011483:intron | 45.0% | |
| ! | GCACCTTGTGCTGACATATA+TGG | + | chr8.2:21509892-21509911 | None:intergenic | 45.0% |
| !! | GTAATCATAGGTGTCGGTGT+CGG | + | chr8.2:21509541-21509560 | None:intergenic | 45.0% |
| !!! | CTCCATTTTGAGTTTGAGGG+AGG | - | chr8.2:21508892-21508911 | MS.gene011483:intron | 45.0% |
| AAGTCAATGGTCCGGTCTCA+TGG | - | chr8.2:21510355-21510374 | MS.gene011483:CDS | 50.0% | |
| AGAACAGTGGTGGTCAACAC+TGG | - | chr8.2:21509740-21509759 | MS.gene011483:CDS | 50.0% | |
| AGAACCGTAGAATCTTGCGG+TGG | + | chr8.2:21507641-21507660 | None:intergenic | 50.0% | |
| AGCACCTTCCTGAGAAACTG+AGG | + | chr8.2:21508688-21508707 | None:intergenic | 50.0% | |
| CAGTCTGCTGGATTCTACCT+TGG | - | chr8.2:21508743-21508762 | MS.gene011483:intron | 50.0% | |
| CCGCGGTGATAATTTCTCCA+AGG | - | chr8.2:21507997-21508016 | MS.gene011483:CDS | 50.0% | |
| TACGGTTCTCTCAACCGAAG+TGG | - | chr8.2:21507652-21507671 | MS.gene011483:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | - | chr8.2:21510541-21510560 | MS.gene011483:CDS | 50.0% | |
| TGCCGAGATAGGGGAATAAG+TGG | - | chr8.2:21509364-21509383 | MS.gene011483:intron | 50.0% | |
| TGGCAAACTCTGGTCAAAGG+TGG | - | chr8.2:21509779-21509798 | MS.gene011483:CDS | 50.0% | |
| TGGCTGGAGAGGATTTGCAT+TGG | - | chr8.2:21510671-21510690 | MS.gene011483:CDS | 50.0% | |
| TGTCGCGATGAAGAGAGGTA+TGG | + | chr8.2:21508140-21508159 | None:intergenic | 50.0% | |
| TTTCGCCATTACCGCCACTT+CGG | - | chr8.2:21507612-21507631 | MS.gene011483:CDS | 50.0% | |
| ! | TGTGATGTCTAGAGCCTCGT+TGG | + | chr8.2:21509805-21509824 | None:intergenic | 50.0% |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | - | chr8.2:21510651-21510670 | MS.gene011483:CDS | 50.0% |
| !! | CGAGGCTCTAGACATCACAA+AGG | - | chr8.2:21509806-21509825 | MS.gene011483:CDS | 50.0% |
| !!! | CCATTGATTTTCGATCCCGG+CGG | - | chr8.2:21508109-21508128 | MS.gene011483:intron | 50.0% |
| ACCGACGTGTGTCCGAGATT+GGG | + | chr8.2:21509516-21509535 | None:intergenic | 55.0% | |
| CCGCCGGGATCGAAAATCAA+TGG | + | chr8.2:21508112-21508131 | None:intergenic | 55.0% | |
| CGCTGGCAAACTCTGGTCAA+AGG | - | chr8.2:21509776-21509795 | MS.gene011483:CDS | 55.0% | |
| CTCTTCATCGCGACAGTTCC+TGG | - | chr8.2:21508145-21508164 | MS.gene011483:intron | 55.0% | |
| CTGGTCAAAACGGTCAACGC+TGG | - | chr8.2:21509759-21509778 | MS.gene011483:CDS | 55.0% | |
| GGAACTGTCGCGATGAAGAG+AGG | + | chr8.2:21508145-21508164 | None:intergenic | 55.0% | |
| GGTTTCCGAAGTGGCGGTAA+TGG | + | chr8.2:21507620-21507639 | None:intergenic | 55.0% | |
| TCCCAATCTCGGACACACGT+CGG | - | chr8.2:21509512-21509531 | MS.gene011483:intron | 55.0% | |
| TCTTGCGGTGGTTTCCGAAG+TGG | + | chr8.2:21507629-21507648 | None:intergenic | 55.0% | |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | - | chr8.2:21510648-21510667 | MS.gene011483:CDS | 55.0% |
| CACCGACGTGTGTCCGAGAT+TGG | + | chr8.2:21509517-21509536 | None:intergenic | 60.0% | |
| CGGTCAACGCTGGCAAACTC+TGG | - | chr8.2:21509769-21509788 | MS.gene011483:CDS | 60.0% | |
| CTGGTCAAAGGTGGCCAACG+AGG | - | chr8.2:21509788-21509807 | MS.gene011483:CDS | 60.0% | |
| CTTGGGCCTCTTCAGTCTGC+TGG | - | chr8.2:21508731-21508750 | MS.gene011483:intron | 60.0% | |
| TCGTGCTTGGAAGGCTGCAG+AGG | - | chr8.2:21510291-21510310 | MS.gene011483:CDS | 60.0% | |
| TGCGGTGGTTTCCGAAGTGG+CGG | + | chr8.2:21507626-21507645 | None:intergenic | 60.0% | |
| ! | AGAGGTATGGCAACACCGCC+GGG | + | chr8.2:21508127-21508146 | None:intergenic | 60.0% |
| ! | GAGAGGTATGGCAACACCGC+CGG | + | chr8.2:21508128-21508147 | None:intergenic | 60.0% |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | - | chr8.2:21510655-21510674 | MS.gene011483:CDS | 60.0% |
| GGGCTAAGTGGTGGCTGGAG+AGG | - | chr8.2:21510660-21510679 | MS.gene011483:CDS | 65.0% | |
| CCATCACCTCCGGCGACCCA+AGG | + | chr8.2:21508082-21508101 | None:intergenic | 70.0% | |
| CCTTGGGTCGCCGGAGGTGA+TGG | - | chr8.2:21508079-21508098 | MS.gene011483:intron | 70.0% | |
| TCACCTCCGGCGACCCAAGG+CGG | + | chr8.2:21508079-21508098 | None:intergenic | 70.0% | |
| TCAGCACCGCCTTGGGTCGC+CGG | - | chr8.2:21508070-21508089 | MS.gene011483:intron | 70.0% | |
| ! | GCACCGCCTTGGGTCGCCGG+AGG | - | chr8.2:21508073-21508092 | MS.gene011483:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 21507557 | 21510731 | 21507557 | ID=MS.gene011483 |
| chr8.2 | mRNA | 21507557 | 21510731 | 21507557 | ID=MS.gene011483.t1;Parent=MS.gene011483 |
| chr8.2 | exon | 21509734 | 21510731 | 21509734 | ID=MS.gene011483.t1.exon1;Parent=MS.gene011483.t1 |
| chr8.2 | CDS | 21509734 | 21510731 | 21509734 | ID=cds.MS.gene011483.t1;Parent=MS.gene011483.t1 |
| chr8.2 | exon | 21507892 | 21508075 | 21507892 | ID=MS.gene011483.t1.exon2;Parent=MS.gene011483.t1 |
| chr8.2 | CDS | 21507892 | 21508075 | 21507892 | ID=cds.MS.gene011483.t1;Parent=MS.gene011483.t1 |
| chr8.2 | exon | 21507557 | 21507739 | 21507557 | ID=MS.gene011483.t1.exon3;Parent=MS.gene011483.t1 |
| chr8.2 | CDS | 21507557 | 21507739 | 21507557 | ID=cds.MS.gene011483.t1;Parent=MS.gene011483.t1 |
| Gene Sequence |
| Protein sequence |
