AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011503

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011503.t1 MTR_4g101660 98.630 219 2 1 1 219 1 218 2.92e-162 446
MS.gene011503.t1 MTR_4g025900 70.792 202 52 5 20 219 25 221 5.07e-90 264
MS.gene011503.t1 MTR_2g087740 49.510 204 91 6 8 209 2 195 1.93e-56 178
MS.gene011503.t1 MTR_4g114730 53.333 180 64 5 7 182 2 165 4.57e-55 174
MS.gene011503.t1 MTR_4g050300 49.010 202 79 7 9 209 1 179 1.30e-49 160
MS.gene011503.t1 MTR_5g034030 49.686 159 71 4 18 175 12 162 3.62e-45 150
MS.gene011503.t1 MTR_5g046230 41.916 167 78 3 9 174 7 155 2.11e-36 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011503.t1 AT2G45190 61.009 218 74 6 10 219 15 229 2.50e-82 245
MS.gene011503.t1 AT4G00180 61.504 226 63 10 12 217 17 238 1.61e-73 223
MS.gene011503.t1 AT4G00180 60.190 211 60 10 27 217 1 207 3.42e-62 193
MS.gene011503.t1 AT2G26580 57.143 168 49 6 17 182 8 154 1.57e-56 177
MS.gene011503.t1 AT2G26580 57.143 168 49 6 17 182 8 154 1.57e-56 177
MS.gene011503.t1 AT1G08465 50.515 194 79 4 17 209 7 184 6.22e-55 174
MS.gene011503.t1 AT2G45190 57.143 168 61 6 60 219 1 165 3.60e-54 171
MS.gene011503.t1 AT1G23420 46.286 175 90 3 6 178 8 180 6.38e-39 134
MS.gene011503.t1 AT1G23420 46.286 175 90 3 6 178 39 211 3.48e-38 133
MS.gene011503.t1 AT1G69180 45.000 160 69 3 15 174 16 156 6.13e-34 120

Find 58 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATGGTTCATCATAAAATT+TGG 0.162315 8.2:-21749413 None:intergenic
AATCATTTGGTGCATTTATA+TGG 0.220470 8.2:-21749430 None:intergenic
ACCAGAAGGTTATGATGATT+TGG 0.269243 8.2:-21749236 None:intergenic
CCAGAAGGTTATGATGATTT+GGG 0.306156 8.2:-21749235 None:intergenic
ATAAAATTTGGAGCTGGGTT+TGG 0.340235 8.2:-21749401 None:intergenic
GCTTCCCTGTGGGTTATATC+AGG 0.345088 8.2:-21750656 None:intergenic
CCCAAATCATCATAACCTTC+TGG 0.358123 8.2:+21749235 MS.gene011503:CDS
GTCTTCTTCATAGTCTGATC+AGG 0.388325 8.2:-21751516 None:intergenic
ATAGAGATTGATGCATTAGT+AGG 0.390762 8.2:-21751760 None:intergenic
CACTTCCCACACATTCACTT+TGG 0.432093 8.2:+21751486 MS.gene011503:CDS
TGTCCCAAATGAAACTGATT+GGG 0.435332 8.2:-21749200 None:intergenic
TTCAACCACAACATTATCCT+TGG 0.449974 8.2:+21748891 MS.gene011503:CDS
GTGTCCCAAATGAAACTGAT+TGG 0.468609 8.2:-21749201 None:intergenic
AAAGGAGGATCATACATTCT+TGG 0.469847 8.2:-21750693 None:intergenic
AGTAATGCACGCATGTTGAC+TGG 0.472196 8.2:-21749167 None:intergenic
TTCATCATAAAATTTGGAGC+TGG 0.473136 8.2:-21749407 None:intergenic
GGAGGCATAGAGAAATCATT+TGG 0.480020 8.2:-21749443 None:intergenic
TCACGTCTGTTTATGATTGG+TGG 0.480315 8.2:-21749497 None:intergenic
TCATCATAAAATTTGGAGCT+GGG 0.482099 8.2:-21749406 None:intergenic
ATCTCACGTCTGTTTATGAT+TGG 0.489279 8.2:-21749500 None:intergenic
ATTCTTGGCAGCTGCGCTGA+AGG 0.503305 8.2:-21750678 None:intergenic
CAAAGTGAATGTGTGGGAAG+TGG 0.524635 8.2:-21751485 None:intergenic
CTGTTTATGATTGGTGGTCG+TGG 0.531680 8.2:-21749491 None:intergenic
TGCGCTGAAGGCTTCCCTGT+GGG 0.539083 8.2:-21750666 None:intergenic
CAGATTCTGATGAAAGATGC+GGG 0.541160 8.2:+21751705 MS.gene011503:CDS
AACAAAGTTGCTCGGAAGGA+GGG 0.547749 8.2:-21748921 None:intergenic
GGAAGGAGGGAGGTGGTCCA+AGG 0.549892 8.2:-21748908 None:intergenic
GAAGACAAATGTGTGCCAGC+AGG 0.553012 8.2:+21751533 MS.gene011503:CDS
CTGCGCTGAAGGCTTCCCTG+TGG 0.555021 8.2:-21750667 None:intergenic
GATGTTTCATACAGCAAGGA+TGG 0.571365 8.2:-21748968 None:intergenic
TAGAGATTGATGCATTAGTA+GGG 0.577948 8.2:-21751759 None:intergenic
GGATAATGTTGTGGTTGAAG+AGG 0.579637 8.2:-21748887 None:intergenic
GTCTTGAACAAGCTTGTGCA+AGG 0.580384 8.2:-21749107 None:intergenic
TAACAAAGTTGCTCGGAAGG+AGG 0.582448 8.2:-21748922 None:intergenic
GTTGCTCGGAAGGAGGGAGG+TGG 0.583306 8.2:-21748915 None:intergenic
ACATAACAAAGTTGCTCGGA+AGG 0.586092 8.2:-21748925 None:intergenic
GATTGACAGACTTTATGCGT+TGG 0.591606 8.2:-21750634 None:intergenic
AAAGTGAATGTGTGGGAAGT+GGG 0.594462 8.2:-21751484 None:intergenic
CTCATCAGCTACAGTCCTAG+TGG 0.598065 8.2:-21749465 None:intergenic
AGCAAGGATGGTGTCACAGA+TGG 0.603099 8.2:-21748956 None:intergenic
TCAATCCTGATATAACCCAC+AGG 0.603889 8.2:+21750651 MS.gene011503:CDS
TCATCAGCTACAGTCCTAGT+GGG 0.606377 8.2:-21749464 None:intergenic
ATTTCTCTATGCCTCCCACT+AGG 0.608537 8.2:+21749450 MS.gene011503:CDS
TCAGATTCTGATGAAAGATG+CGG 0.615278 8.2:+21751704 MS.gene011503:CDS
CAGAAGGTTATGATGATTTG+GGG 0.623732 8.2:-21749234 None:intergenic
GTGGACATAACAAAGTTGCT+CGG 0.624197 8.2:-21748929 None:intergenic
ATGAGACCAAAGTGAATGTG+TGG 0.636661 8.2:-21751492 None:intergenic
GTCCCAAATGAAACTGATTG+GGG 0.640416 8.2:-21749199 None:intergenic
CAATCCTGATATAACCCACA+GGG 0.644329 8.2:+21750652 MS.gene011503:CDS
AAAGTTGCTCGGAAGGAGGG+AGG 0.666622 8.2:-21748918 None:intergenic
ATGAAGCGATTGTATGCTGA+GGG 0.673566 8.2:-21750466 None:intergenic
TCAGCTACAGTCCTAGTGGG+AGG 0.678197 8.2:-21749461 None:intergenic
TGGTGTCACAGATGGTGCAG+TGG 0.683501 8.2:-21748948 None:intergenic
AAGACTGTTACTGTGAGATG+CGG 0.688688 8.2:+21749125 MS.gene011503:CDS
TGAGACCAAAGTGAATGTGT+GGG 0.708380 8.2:-21751491 None:intergenic
GTGGTCCAAGGATAATGTTG+TGG 0.713676 8.2:-21748896 None:intergenic
GATGAAGCGATTGTATGCTG+AGG 0.735800 8.2:-21750467 None:intergenic
TCCCAAATGAAACTGATTGG+GGG 0.774348 8.2:-21749198 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAAAATA+TGG + chr8.2:21751172-21751191 MS.gene011503:intron 0.0%
!! AAAAAAATATTTACTTTATG+TGG + chr8.2:21749752-21749771 MS.gene011503:intron 10.0%
!! AGTTCAAATTAATAAATTAT+GGG + chr8.2:21749650-21749669 MS.gene011503:intron 10.0%
!! ATATATTATATATGTAAGAT+GGG + chr8.2:21750160-21750179 MS.gene011503:intron 10.0%
!! ATTCATTTATTTATAAGTTA+AGG - chr8.2:21750722-21750741 None:intergenic 10.0%
!! TATATATTATATATGTAAGA+TGG + chr8.2:21750159-21750178 MS.gene011503:intron 10.0%
!!! ATATTGATTAAATAAAGTTA+AGG + chr8.2:21751031-21751050 MS.gene011503:intron 10.0%
!!! GAAATTATTTATTGATTTTA+GGG + chr8.2:21750009-21750028 MS.gene011503:intron 10.0%
!! AAAAAAAAATTAAGGAGAAA+AGG + chr8.2:21750941-21750960 MS.gene011503:intron 15.0%
!! AACAGATTAATTAAATTGAA+AGG + chr8.2:21750336-21750355 MS.gene011503:intron 15.0%
!! CATAAAATTAATCAAGATTA+AGG - chr8.2:21751137-21751156 None:intergenic 15.0%
!! CATGTAAATATCTATAAAAA+AGG + chr8.2:21751309-21751328 MS.gene011503:intron 15.0%
!! GAGTTCAAATTAATAAATTA+TGG + chr8.2:21749649-21749668 MS.gene011503:intron 15.0%
!! TATATTATATATGTAAGATG+GGG + chr8.2:21750161-21750180 MS.gene011503:intron 15.0%
!! TTAATGTATGGTATATAAAA+TGG - chr8.2:21749301-21749320 None:intergenic 15.0%
!!! AAGTTAAAAAAAAAGTACAA+TGG - chr8.2:21750513-21750532 None:intergenic 15.0%
!!! GATTTTGATATATATGATAA+CGG + chr8.2:21750405-21750424 MS.gene011503:intron 15.0%
!!! GGAAATTATTTATTGATTTT+AGG + chr8.2:21750008-21750027 MS.gene011503:intron 15.0%
!!! TAGATATTTACATGTTTTAT+AGG - chr8.2:21751303-21751322 None:intergenic 15.0%
!! AAAATTAATAACCCTAACTT+GGG + chr8.2:21750776-21750795 MS.gene011503:intron 20.0%
!! AATAATACCTCATGAAAAAA+AGG + chr8.2:21750312-21750331 MS.gene011503:intron 20.0%
!! ACAATTCAAAATGAATGATA+TGG + chr8.2:21751401-21751420 MS.gene011503:intron 20.0%
!! ATATGGTTCATCATAAAATT+TGG - chr8.2:21749416-21749435 None:intergenic 20.0%
!! ATGTGAAGTAAATCTAAATA+CGG + chr8.2:21750591-21750610 MS.gene011503:intron 20.0%
!! ATTTATAAGTTAAGGAGAAA+AGG - chr8.2:21750714-21750733 None:intergenic 20.0%
!! CAACTATATGAAAATATAAC+AGG + chr8.2:21750378-21750397 MS.gene011503:intron 20.0%
!! CCTCTCAAAAAAAAAAATTA+AGG + chr8.2:21750933-21750952 MS.gene011503:intron 20.0%
!! TAAAATTAATAACCCTAACT+TGG + chr8.2:21750775-21750794 MS.gene011503:intron 20.0%
!! TAAATAAAGTTAAGGAGAAA+AGG + chr8.2:21751039-21751058 MS.gene011503:intron 20.0%
!! TAATCAAGATTAAGGATAAA+AGG - chr8.2:21751129-21751148 None:intergenic 20.0%
!! TTCTATGATAAGCTAAATTA+AGG - chr8.2:21749974-21749993 None:intergenic 20.0%
!!! AATCATGGACTAAAAAAAAT+TGG - chr8.2:21751360-21751379 None:intergenic 20.0%
!!! ATAGAGACATTATATCTTTT+AGG - chr8.2:21749911-21749930 None:intergenic 20.0%
!!! ATTCCTTCATTTTTTTTTTC+AGG + chr8.2:21749076-21749095 MS.gene011503:intron 20.0%
!!! CCTTAATTTTTTTTTTTGAG+AGG - chr8.2:21750936-21750955 None:intergenic 20.0%
!!! CTGTTATATTTTCATATAGT+TGG - chr8.2:21750380-21750399 None:intergenic 20.0%
!!! TAGAGACATTATATCTTTTA+GGG - chr8.2:21749910-21749929 None:intergenic 20.0%
!!! TGATCTTCTAAAATATTGTT+CGG + chr8.2:21749601-21749620 MS.gene011503:intron 20.0%
! AAAGTATGTCACATATCAAA+AGG - chr8.2:21751449-21751468 None:intergenic 25.0%
! ACTTAAGAGTAAAAAAGAAG+AGG - chr8.2:21749277-21749296 None:intergenic 25.0%
! CAGAAATGAAAAAAAGTCAT+GGG - chr8.2:21751636-21751655 None:intergenic 25.0%
! GTTGCAAAGTAATTAATGTA+TGG - chr8.2:21749313-21749332 None:intergenic 25.0%
! TAAGTATCAACTGAATCATA+AGG + chr8.2:21750269-21750288 MS.gene011503:intron 25.0%
! TCACCTGAAAAAAAAAATGA+AGG - chr8.2:21749082-21749101 None:intergenic 25.0%
! TCAGAAATGAAAAAAAGTCA+TGG - chr8.2:21751637-21751656 None:intergenic 25.0%
! TTAAAGTAAGGAATGGTTTA+AGG - chr8.2:21749877-21749896 None:intergenic 25.0%
!! ATTAAGGATAAAAGGTACAA+TGG - chr8.2:21751121-21751140 None:intergenic 25.0%
!! CATTTTGAATTGTTGAAACA+GGG - chr8.2:21751394-21751413 None:intergenic 25.0%
!! TCATTTTGAATTGTTGAAAC+AGG - chr8.2:21751395-21751414 None:intergenic 25.0%
!! TGTCCTTTTTGTTAATTTCT+CGG + chr8.2:21750071-21750090 MS.gene011503:intron 25.0%
!! TTACTTTGTTTGAGTAACTT+AGG + chr8.2:21749536-21749555 MS.gene011503:intron 25.0%
!!! AATCAATTTTTTTTTCTCCG+AGG + chr8.2:21751213-21751232 MS.gene011503:intron 25.0%
!!! AATCATTTGGTGCATTTATA+TGG - chr8.2:21749433-21749452 None:intergenic 25.0%
!!! ATTTTTTTTTTTCTTGCAGC+AGG + chr8.2:21749370-21749389 MS.gene011503:intron 25.0%
!!! CAAATTTTAGTTGAAGTTGA+TGG + chr8.2:21750846-21750865 MS.gene011503:intron 25.0%
!!! TATGGTTTTCTAGTTCATTT+TGG + chr8.2:21751419-21751438 MS.gene011503:intron 25.0%
ATAGAGATGAAAGCAAACTT+AGG + chr8.2:21750109-21750128 MS.gene011503:intron 30.0%
ATGTCTCTATAAGTAATGAC+AGG + chr8.2:21749921-21749940 MS.gene011503:intron 30.0%
CATAGAACAGTTTGTAATAC+TGG + chr8.2:21749987-21750006 MS.gene011503:intron 30.0%
CTTTAAACAACTACTATTCC+GGG - chr8.2:21750232-21750251 None:intergenic 30.0%
GTACCGAGAAATTAACAAAA+AGG - chr8.2:21750077-21750096 None:intergenic 30.0%
TATAAGTTAAGGAGAAAAGG+AGG - chr8.2:21750711-21750730 None:intergenic 30.0%
TGTATCATTCTTCTTTATCC+AGG + chr8.2:21751671-21751690 MS.gene011503:intron 30.0%
TTTAAACAACTACTATTCCG+GGG - chr8.2:21750231-21750250 None:intergenic 30.0%
! AAAAGGAAGGAAGTCTTTTA+TGG + chr8.2:21749835-21749854 MS.gene011503:intron 30.0%
! AAATTGAGAGTATAACCAGA+AGG - chr8.2:21749253-21749272 None:intergenic 30.0%
! AATGTTGTGTGTTGACAAAA+AGG + chr8.2:21751264-21751283 MS.gene011503:intron 30.0%
! ACTTTCTTTTGGTAAAAGGA+AGG + chr8.2:21749822-21749841 MS.gene011503:intron 30.0%
! GCTTTAAACAACTACTATTC+CGG - chr8.2:21750233-21750252 None:intergenic 30.0%
! TCATCATAAAATTTGGAGCT+GGG - chr8.2:21749409-21749428 None:intergenic 30.0%
! TCTAAGTAGTATAGCTTTTG+TGG + chr8.2:21749338-21749357 MS.gene011503:intron 30.0%
! TGGTGGATAGAAAAAAGATA+GGG + chr8.2:21750192-21750211 MS.gene011503:intron 30.0%
! TTCATCATAAAATTTGGAGC+TGG - chr8.2:21749410-21749429 None:intergenic 30.0%
! TTCCACTTTCTTTTGGTAAA+AGG + chr8.2:21749818-21749837 MS.gene011503:intron 30.0%
! TTCCTTTTACCAAAAGAAAG+TGG - chr8.2:21749823-21749842 None:intergenic 30.0%
! TTTATGTGGTTGCTATTGAT+TGG + chr8.2:21749766-21749785 MS.gene011503:intron 30.0%
! TTTTATGCTTCTGCTAATCT+TGG + chr8.2:21751729-21751748 MS.gene011503:CDS 30.0%
!! AAACATTTTTCAGCGAGAAT+AGG - chr8.2:21751584-21751603 None:intergenic 30.0%
!! AACATTTTTCAGCGAGAATA+GGG - chr8.2:21751583-21751602 None:intergenic 30.0%
!! CTTCTAAAATATTGTTCGGT+TGG + chr8.2:21749605-21749624 MS.gene011503:intron 30.0%
!!! AAAAACCATCGTTTTGATTG+AGG - chr8.2:21749565-21749584 None:intergenic 30.0%
!!! TCTGTTACCTTTTTTTCATG+AGG - chr8.2:21750322-21750341 None:intergenic 30.0%
AAAGGAGGATCATACATTCT+TGG - chr8.2:21750696-21750715 None:intergenic 35.0%
ACCAGAAGGTTATGATGATT+TGG - chr8.2:21749239-21749258 None:intergenic 35.0%
ATCTCACGTCTGTTTATGAT+TGG - chr8.2:21749503-21749522 None:intergenic 35.0%
CAGAAGGTTATGATGATTTG+GGG - chr8.2:21749237-21749256 None:intergenic 35.0%
CCAGAAGGTTATGATGATTT+GGG - chr8.2:21749238-21749257 None:intergenic 35.0%
TAGTGATGTTTCATACAGCA+AGG - chr8.2:21748975-21748994 None:intergenic 35.0%
TCAGATTCTGATGAAAGATG+CGG + chr8.2:21751704-21751723 MS.gene011503:CDS 35.0%
TCATTCTTCTTTATCCAGGA+AGG + chr8.2:21751675-21751694 MS.gene011503:intron 35.0%
TGCTATGATAATTTACCTGC+TGG - chr8.2:21751551-21751570 None:intergenic 35.0%
TGTAAGATGGGGAAAATATG+TGG + chr8.2:21750172-21750191 MS.gene011503:intron 35.0%
TGTCCCAAATGAAACTGATT+GGG - chr8.2:21749203-21749222 None:intergenic 35.0%
TTAAACAACTACTATTCCGG+GGG - chr8.2:21750230-21750249 None:intergenic 35.0%
TTCAACCACAACATTATCCT+TGG + chr8.2:21748891-21748910 MS.gene011503:CDS 35.0%
TTGCTTTCATCTCTATATGC+TGG - chr8.2:21750105-21750124 None:intergenic 35.0%
! ATAAAATTTGGAGCTGGGTT+TGG - chr8.2:21749404-21749423 None:intergenic 35.0%
! CTAAGCTAGTGTTGAAAAGT+GGG - chr8.2:21749015-21749034 None:intergenic 35.0%
! GGGTTCAAGATCTGAATTTT+CGG + chr8.2:21750796-21750815 MS.gene011503:intron 35.0%
! TAAGCTAGTGTTGAAAAGTG+GGG - chr8.2:21749014-21749033 None:intergenic 35.0%
! TTTCAACACTAGCTTAGCTA+GGG + chr8.2:21749018-21749037 MS.gene011503:intron 35.0%
!! ACATTTTTCAGCGAGAATAG+GGG - chr8.2:21751582-21751601 None:intergenic 35.0%
!! GCACACTTTAAAGTAAGGAA+TGG - chr8.2:21749884-21749903 None:intergenic 35.0%
!! GTGGTGGATAGAAAAAAGAT+AGG + chr8.2:21750191-21750210 MS.gene011503:intron 35.0%
!! TTTTCAACACTAGCTTAGCT+AGG + chr8.2:21749017-21749036 MS.gene011503:intron 35.0%
!!! TTTTTTTTTCTTGCAGCAGG+AGG + chr8.2:21749373-21749392 MS.gene011503:intron 35.0%
AAAACAAAGCCTCGTGAAGA+AGG - chr8.2:21750041-21750060 None:intergenic 40.0%
AAACAAAGCCTCGTGAAGAA+GGG - chr8.2:21750040-21750059 None:intergenic 40.0%
AAAGTGAATGTGTGGGAAGT+GGG - chr8.2:21751487-21751506 None:intergenic 40.0%
AAATGAAACTGATTGGGGGA+TGG - chr8.2:21749197-21749216 None:intergenic 40.0%
AAGAAAGTGGAACAAGACCA+AGG - chr8.2:21749810-21749829 None:intergenic 40.0%
AAGACTGTTACTGTGAGATG+CGG + chr8.2:21749125-21749144 MS.gene011503:CDS 40.0%
AAGATGGGGAAAATATGTGG+TGG + chr8.2:21750175-21750194 MS.gene011503:intron 40.0%
AAGGAGAAAAGGATGCTCTT+TGG + chr8.2:21750952-21750971 MS.gene011503:intron 40.0%
ACATAACAAAGTTGCTCGGA+AGG - chr8.2:21748928-21748947 None:intergenic 40.0%
ACATACTTTCTGTGTGACAG+TGG + chr8.2:21751460-21751479 MS.gene011503:intron 40.0%
AGAAAGTGGAACAAGACCAA+GGG - chr8.2:21749809-21749828 None:intergenic 40.0%
ATCCCCCAATCAGTTTCATT+TGG + chr8.2:21749196-21749215 MS.gene011503:CDS 40.0%
ATGAAGCGATTGTATGCTGA+GGG - chr8.2:21750469-21750488 None:intergenic 40.0%
ATGAGACCAAAGTGAATGTG+TGG - chr8.2:21751495-21751514 None:intergenic 40.0%
CAATCCTGATATAACCCACA+GGG + chr8.2:21750652-21750671 MS.gene011503:CDS 40.0%
CAGATCTTGAACCCAAGTTA+GGG - chr8.2:21750790-21750809 None:intergenic 40.0%
CAGATTCTGATGAAAGATGC+GGG + chr8.2:21751705-21751724 MS.gene011503:CDS 40.0%
CATACTTTCTGTGTGACAGT+GGG + chr8.2:21751461-21751480 MS.gene011503:intron 40.0%
CCCAAATCATCATAACCTTC+TGG + chr8.2:21749235-21749254 MS.gene011503:CDS 40.0%
GATGTTTCATACAGCAAGGA+TGG - chr8.2:21748971-21748990 None:intergenic 40.0%
GATTGACAGACTTTATGCGT+TGG - chr8.2:21750637-21750656 None:intergenic 40.0%
GGATAATGTTGTGGTTGAAG+AGG - chr8.2:21748890-21748909 None:intergenic 40.0%
GGTTTCCTCAATCAAAACGA+TGG + chr8.2:21749557-21749576 MS.gene011503:intron 40.0%
GTCCCAAATGAAACTGATTG+GGG - chr8.2:21749202-21749221 None:intergenic 40.0%
GTCTTCTTCATAGTCTGATC+AGG - chr8.2:21751519-21751538 None:intergenic 40.0%
GTGGACATAACAAAGTTGCT+CGG - chr8.2:21748932-21748951 None:intergenic 40.0%
GTGTCCCAAATGAAACTGAT+TGG - chr8.2:21749204-21749223 None:intergenic 40.0%
TCAATCCTGATATAACCCAC+AGG + chr8.2:21750651-21750670 MS.gene011503:CDS 40.0%
TCACGTCTGTTTATGATTGG+TGG - chr8.2:21749500-21749519 None:intergenic 40.0%
TCAGATCTTGAACCCAAGTT+AGG - chr8.2:21750791-21750810 None:intergenic 40.0%
TCCCAAATGAAACTGATTGG+GGG - chr8.2:21749201-21749220 None:intergenic 40.0%
TCCCCCAATCAGTTTCATTT+GGG + chr8.2:21749197-21749216 MS.gene011503:CDS 40.0%
TGAATTGTTGAAACAGGGCA+GGG - chr8.2:21751389-21751408 None:intergenic 40.0%
TGAGACCAAAGTGAATGTGT+GGG - chr8.2:21751494-21751513 None:intergenic 40.0%
TTGAATTGTTGAAACAGGGC+AGG - chr8.2:21751390-21751409 None:intergenic 40.0%
! GCTAAGCTAGTGTTGAAAAG+TGG - chr8.2:21749016-21749035 None:intergenic 40.0%
! GGAGGCATAGAGAAATCATT+TGG - chr8.2:21749446-21749465 None:intergenic 40.0%
! TTGATTGGACAGTGTTGTTG+AGG + chr8.2:21749781-21749800 MS.gene011503:intron 40.0%
!! GGCATGCACACTTTAAAGTA+AGG - chr8.2:21749889-21749908 None:intergenic 40.0%
!! TTGAAGTTGATGGTTCTCCT+CGG + chr8.2:21750856-21750875 MS.gene011503:intron 40.0%
!!! GGTCTTGTTCCACTTTCTTT+TGG + chr8.2:21749811-21749830 MS.gene011503:intron 40.0%
AACAAAGTTGCTCGGAAGGA+GGG - chr8.2:21748924-21748943 None:intergenic 45.0%
AGGGCAGGGAAATACAATCA+TGG - chr8.2:21751375-21751394 None:intergenic 45.0%
AGTAATGCACGCATGTTGAC+TGG - chr8.2:21749170-21749189 None:intergenic 45.0%
ATTTCTCTATGCCTCCCACT+AGG + chr8.2:21749450-21749469 MS.gene011503:CDS 45.0%
CAAAGTGAATGTGTGGGAAG+TGG - chr8.2:21751488-21751507 None:intergenic 45.0%
CACTTCCCACACATTCACTT+TGG + chr8.2:21751486-21751505 MS.gene011503:CDS 45.0%
CTAAATACGGTCCATCTGCA+GGG + chr8.2:21750604-21750623 MS.gene011503:intron 45.0%
GAATCTGATCATCTCCTTCC+TGG - chr8.2:21751692-21751711 None:intergenic 45.0%
GATGAAGCGATTGTATGCTG+AGG - chr8.2:21750470-21750489 None:intergenic 45.0%
GTCTTGAACAAGCTTGTGCA+AGG - chr8.2:21749110-21749129 None:intergenic 45.0%
GTGGTCCAAGGATAATGTTG+TGG - chr8.2:21748899-21748918 None:intergenic 45.0%
TAACAAAGTTGCTCGGAAGG+AGG - chr8.2:21748925-21748944 None:intergenic 45.0%
TAAGCCGAGTATGCAAACCT+CGG - chr8.2:21751233-21751252 None:intergenic 45.0%
TCATCAGCTACAGTCCTAGT+GGG - chr8.2:21749467-21749486 None:intergenic 45.0%
TCTAAATACGGTCCATCTGC+AGG + chr8.2:21750603-21750622 MS.gene011503:intron 45.0%
TTCTCCGAGGTTTGCATACT+CGG + chr8.2:21751226-21751245 MS.gene011503:intron 45.0%
! CTAGTGTTGAAAAGTGGGGA+TGG - chr8.2:21749010-21749029 None:intergenic 45.0%
! CTGTTTATGATTGGTGGTCG+TGG - chr8.2:21749494-21749513 None:intergenic 45.0%
! GGAACTCTCTGTCTTTTCTC+TGG - chr8.2:21750448-21750467 None:intergenic 45.0%
CTCATCAGCTACAGTCCTAG+TGG - chr8.2:21749468-21749487 None:intergenic 50.0%
GAAGACAAATGTGTGCCAGC+AGG + chr8.2:21751533-21751552 MS.gene011503:CDS 50.0%
GTGAGAGACACTCATTACCG+AGG - chr8.2:21750876-21750895 None:intergenic 50.0%
! CAGTGTTGTTGAGGTACCCT+TGG + chr8.2:21749790-21749809 MS.gene011503:intron 50.0%
! GCTTCCCTGTGGGTTATATC+AGG - chr8.2:21750659-21750678 None:intergenic 50.0%
!! AGCAAGGATGGTGTCACAGA+TGG - chr8.2:21748959-21748978 None:intergenic 50.0%
!! AGGGTACTTTTCTTCTCCCC+CGG + chr8.2:21750211-21750230 MS.gene011503:intron 50.0%
!!! CTCTGTCTTTTCTCTGGAGC+TGG - chr8.2:21750442-21750461 None:intergenic 50.0%
AAAGTTGCTCGGAAGGAGGG+AGG - chr8.2:21748921-21748940 None:intergenic 55.0%
ATTCTTGGCAGCTGCGCTGA+AGG - chr8.2:21750681-21750700 None:intergenic 55.0%
TCAGCTACAGTCCTAGTGGG+AGG - chr8.2:21749464-21749483 None:intergenic 55.0%
TTGGATCTCGTCCCTGCAGA+TGG - chr8.2:21750618-21750637 None:intergenic 55.0%
!! TGGTGTCACAGATGGTGCAG+TGG - chr8.2:21748951-21748970 None:intergenic 55.0%
TGCGCTGAAGGCTTCCCTGT+GGG - chr8.2:21750669-21750688 None:intergenic 60.0%
CTGCGCTGAAGGCTTCCCTG+TGG - chr8.2:21750670-21750689 None:intergenic 65.0%
GGAAGGAGGGAGGTGGTCCA+AGG - chr8.2:21748911-21748930 None:intergenic 65.0%
GGGCACAGCCCTTCTTCACG+AGG + chr8.2:21750029-21750048 MS.gene011503:intron 65.0%
GTTGCTCGGAAGGAGGGAGG+TGG - chr8.2:21748918-21748937 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 21748880 21751767 21748880 ID=MS.gene011503
chr8.2 mRNA 21748880 21751767 21748880 ID=MS.gene011503.t1;Parent=MS.gene011503
chr8.2 exon 21748880 21748978 21748880 ID=MS.gene011503.t1.exon1;Parent=MS.gene011503.t1
chr8.2 CDS 21748880 21748978 21748880 ID=cds.MS.gene011503.t1;Parent=MS.gene011503.t1
chr8.2 exon 21749098 21749256 21749098 ID=MS.gene011503.t1.exon2;Parent=MS.gene011503.t1
chr8.2 CDS 21749098 21749256 21749098 ID=cds.MS.gene011503.t1;Parent=MS.gene011503.t1
chr8.2 exon 21749389 21749515 21749389 ID=MS.gene011503.t1.exon3;Parent=MS.gene011503.t1
chr8.2 CDS 21749389 21749515 21749389 ID=cds.MS.gene011503.t1;Parent=MS.gene011503.t1
chr8.2 exon 21750443 21750491 21750443 ID=MS.gene011503.t1.exon4;Parent=MS.gene011503.t1
chr8.2 CDS 21750443 21750491 21750443 ID=cds.MS.gene011503.t1;Parent=MS.gene011503.t1
chr8.2 exon 21750625 21750700 21750625 ID=MS.gene011503.t1.exon5;Parent=MS.gene011503.t1
chr8.2 CDS 21750625 21750700 21750625 ID=cds.MS.gene011503.t1;Parent=MS.gene011503.t1
chr8.2 exon 21751480 21751554 21751480 ID=MS.gene011503.t1.exon6;Parent=MS.gene011503.t1
chr8.2 CDS 21751480 21751554 21751480 ID=cds.MS.gene011503.t1;Parent=MS.gene011503.t1
chr8.2 exon 21751693 21751767 21751693 ID=MS.gene011503.t1.exon7;Parent=MS.gene011503.t1
chr8.2 CDS 21751693 21751767 21751693 ID=cds.MS.gene011503.t1;Parent=MS.gene011503.t1
Gene Sequence

>MS.gene011503

ATGTCGTCCTCTTCAACCACAACATTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCACCATCTGTGACACCATCCTTGCTGTATGAAACATCACTATATTTTCTCACTCCATCCCCACTTTTCAACACTAGCTTAGCTAGGGTTTTTCTTCTCTATTTTTTTATGCAAATATAACTGATTCCTTCATTTTTTTTTTCAGGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACTGTGAGATGCGGTCATTGCACTAATCTGCTTCCAGTCAACATGCGTGCATTACTTCTGCCATCCCCCAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAAATCATCATAACCTTCTGGTTATACTCTCAATTTTCCTCTTCTTTTTTACTCTTAAGTACCATTTTATATACCATACATTAATTACTTTGCAACTAAGTTCTAAGTAGTATAGCTTTTGTGGTGTTGATGCATTTTTTTTTTTCTTGCAGCAGGAGGAGATGCCAAACCCAGCTCCAAATTTTATGATGAACCATATAAATGCACCAAATGATTTCTCTATGCCTCCCACTAGGACTGTAGCTGATGAGCTTCCACGACCACCAATCATAAACAGACGTGAGATTCATTATCTATACTTACTTTGTTTGAGTAACTTAGGTTTCCTCAATCAAAACGATGGTTTTTTTGTTCATGATTTTGTTGATCTTCTAAAATATTGTTCGGTTGGCTTAGTTAAATAAAAGTTGTTGAGTTCAAATTAATAAATTATGGGAAAAGCTAATTAGTATCATATGCTTATAAGCTTTTTAAAAAAAATCAATAAATTAATTACTCAAAAAAATAGTAAATAAAAAAAAATATTTACTTTATGTGGTTGCTATTGATTGGACAGTGTTGTTGAGGTACCCTTGGTCTTGTTCCACTTTCTTTTGGTAAAAGGAAGGAAGTCTTTTATGGCATCATCTCGACATTACCTTAAACCATTCCTTACTTTAAAGTGTGCATGCCCTAAAAGATATAATGTCTCTATAAGTAATGACAGGCTTACATCAAAAGATAGAATATTTTCACCTTAATTTAGCTTATCATAGAACAGTTTGTAATACTGGAAATTATTTATTGATTTTAGGGCACAGCCCTTCTTCACGAGGCTTTGTTTTTCATTTTTAATGTCCTTTTTGTTAATTTCTCGGTACAAGCACCAGCATATAGAGATGAAAGCAAACTTAGGTAATTATTTTGTATGTTTATAAAAATTTATATATTATATATGTAAGATGGGGAAAATATGTGGTGGATAGAAAAAAGATAGGGTACTTTTCTTCTCCCCCGGAATAGTAGTTGTTTAAAGCTTGTAACACTCAGTAATAAGTATCAACTGAATCATAAGGCATAGATTGCAGACAGTTGCAATAATACCTCATGAAAAAAAGGTAACAGATTAATTAAATTGAAAGGTTAAATAAATGAAAATTTCCAACTATATGAAAATATAACAGGAAGTGATTTTGATATATATGATAACGGTGTGTTAATGTCCAGCTCCAGAGAAAAGACAGAGAGTTCCCTCAGCATACAATCGCTTCATCAAGTAAGTAGTCATTTAAAACCATTGTACTTTTTTTTTAACTTCATATTAAATTTCTGATATATAATATTAATTTTTTTTTGTTGATGTTATTAAAGTGTGATGTGAAGTAAATCTAAATACGGTCCATCTGCAGGGACGAGATCCAACGCATAAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATGTATGATCCTCCTTTTCTCCTTAACTTATAAATAAATGAATATATAATTCAATAAATAAAAATGTTATATTAAATAAAATTAATAACCCTAACTTGGGTTCAAGATCTGAATTTTCGGTTGATAGATCAAACATAAATTTCATTTCAAATTTTAGTTGAAGTTGATGGTTCTCCTCGGTAATGAGTGTCTCTCACTTAATCTAAAATTTTGTGCATACAAATTTATGTAATACCTCTCAAAAAAAAAAATTAAGGAGAAAAGGATGCTCTTTGGTTATAATGTAAAATATTGATTAATTTTATTTAATATAAATAAATATTTTTATGAAAATATTGATTAAATAAAGTTAAGGAGAAAAGGATCAAAATCAAGATTTTTATTTGTTAATATCAATATTTTCATTATAGCATTTAAAACCATTGTACCTTTTATCCTTAATCTTGATTAATTTTATGAAAATATTGATTAAATAAATAAATAAATAAAAATATGGATTAATTTGAAATAAATTAATCAATTTTTTTTTCTCCGAGGTTTGCATACTCGGCTTATTATTCATATTAATGTTGTGTGTTGACAAAAAGGATGCATTTTTATACCTATAAAACATGTAAATATCTATAAAAAAGGTCATTTGAGTTTAGATCACTAGAATCCAATTTTTTTTAGTCCATGATTGTATTTCCCTGCCCTGTTTCAACAATTCAAAATGAATGATATGGTTTTCTAGTTCATTTTGGACTACCTTTTGATATGTGACATACTTTCTGTGTGACAGTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGTAAATTATCATAGCATATATATACCCCTATTCTCGCTGAAAAATGTTTCAGACAAATAATAATGCATATTGATATATCCCATGACTTTTTTTCATTTCTGATTGTTTGAGTTTGTTGTATCATTCTTCTTTATCCAGGAAGGAGATGATCAGATTCTGATGAAAGATGCGGGATTTTATGCTTCTGCTAATCTTGGTGTTTCGCCCTACTAA
Protein sequence

>MS.gene011503.t1

MSSSSTTTLSLDHLPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPNHHNLLQEEMPNPAPNFMMNHINAPNDFSMPPTRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGDDQILMKDAGFYASANLGVSPY