AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011560.t1 MTR_4g100550 93.214 280 10 3 1 271 1 280 0.0 525
MS.gene011560.t1 MTR_5g013010 71.141 298 52 9 2 270 1 293 1.95e-133 379
MS.gene011560.t1 MTR_8g006705 57.912 297 82 10 3 257 1 296 6.79e-88 264
MS.gene011560.t1 MTR_7g093430 65.054 186 55 2 50 226 89 273 8.08e-73 225
MS.gene011560.t1 MTR_1g054285 60.000 205 64 5 49 241 82 280 2.22e-69 216
MS.gene011560.t1 MTR_2g061030 74.000 150 35 2 91 237 176 324 1.29e-67 213
MS.gene011560.t1 MTR_5g013010 66.492 191 31 8 2 163 1 187 4.99e-64 199
MS.gene011560.t1 MTR_4g097600 75.573 131 31 1 95 225 110 239 6.68e-63 199
MS.gene011560.t1 MTR_5g014890 71.774 124 34 1 103 226 114 236 2.70e-58 187
MS.gene011560.t1 MTR_1g017090 61.151 139 44 3 111 240 129 266 3.73e-52 172
MS.gene011560.t1 MTR_4g084750 62.097 124 42 1 106 224 59 182 1.88e-46 154
MS.gene011560.t1 MTR_2g038625 45.714 175 95 0 68 242 38 212 1.34e-42 145
MS.gene011560.t1 MTR_2g038580 45.714 175 95 0 68 242 38 212 1.34e-42 145
MS.gene011560.t1 MTR_3g103590 50.888 169 76 3 103 271 136 297 8.58e-41 143
MS.gene011560.t1 MTR_4g126900 58.333 120 47 1 114 230 90 209 1.38e-38 135
MS.gene011560.t1 MTR_7g010020 39.241 158 87 2 53 201 16 173 2.65e-23 96.3
MS.gene011560.t1 MTR_8g468210 40.496 121 69 1 81 198 43 163 4.70e-21 90.5
MS.gene011560.t1 MTR_4g107650 47.748 111 51 1 94 197 77 187 1.82e-20 89.7
MS.gene011560.t1 MTR_6g011610 48.000 100 51 1 101 199 84 183 2.62e-20 88.2
MS.gene011560.t1 MTR_6g007647 48.454 97 43 1 108 197 29 125 2.77e-20 87.8
MS.gene011560.t1 MTR_3g080100 46.667 105 49 1 102 199 10 114 3.20e-20 86.7
MS.gene011560.t1 MTR_6g007647 48.454 97 43 1 108 197 63 159 4.67e-20 87.8
MS.gene011560.t1 MTR_6g011610 48.000 100 51 1 101 199 65 164 4.77e-20 87.0
MS.gene011560.t1 MTR_3g080100 46.667 105 49 1 102 199 49 153 5.34e-20 87.0
MS.gene011560.t1 MTR_8g089895 50.505 99 42 1 108 199 50 148 2.09e-19 86.3
MS.gene011560.t1 MTR_5g039000 45.000 100 54 1 100 199 66 164 7.33e-19 84.3
MS.gene011560.t1 MTR_5g038280 45.690 116 55 2 96 204 71 185 8.50e-19 84.7
MS.gene011560.t1 MTR_1g061660 46.067 89 48 0 112 200 59 147 2.04e-18 82.0
MS.gene011560.t1 MTR_7g103340 45.455 88 48 0 112 199 63 150 3.60e-18 81.6
MS.gene011560.t1 MTR_3g086790 41.406 128 67 2 104 223 52 179 3.92e-18 82.4
MS.gene011560.t1 MTR_8g469430 46.809 94 43 1 112 198 89 182 4.16e-17 79.3
MS.gene011560.t1 MTR_3g092150 44.086 93 45 1 115 200 41 133 1.29e-13 68.9
MS.gene011560.t1 MTR_5g029320 33.333 141 93 1 57 197 38 177 1.54e-13 70.9
MS.gene011560.t1 MTR_8g026960 42.683 82 47 0 116 197 38 119 3.17e-13 67.8
MS.gene011560.t1 MTR_5g019650 42.342 111 62 1 98 206 39 149 5.87e-13 67.0
MS.gene011560.t1 MTR_5g019680 42.202 109 58 1 98 206 39 142 6.40e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011560.t1 AT4G16780 60.345 290 85 6 2 270 1 281 7.02e-101 296
MS.gene011560.t1 AT5G47370 60.714 280 75 9 2 259 1 267 3.42e-96 284
MS.gene011560.t1 AT4G17460 57.095 296 83 10 2 270 1 279 8.08e-95 281
MS.gene011560.t1 AT3G60390 63.750 240 59 7 48 264 75 309 2.40e-88 265
MS.gene011560.t1 AT2G44910 62.332 223 49 5 27 226 67 277 6.85e-81 246
MS.gene011560.t1 AT5G06710 59.091 198 63 4 72 254 135 329 2.15e-68 215
MS.gene011560.t1 AT4G37790 76.423 123 28 1 103 225 117 238 2.69e-61 195
MS.gene011560.t1 AT2G22800 71.875 128 32 2 101 225 99 225 3.35e-58 187
MS.gene011560.t1 AT2G01430 52.326 172 65 4 73 233 95 260 4.40e-46 156
MS.gene011560.t1 AT1G70920 57.480 127 43 2 103 226 57 175 5.83e-37 130
MS.gene011560.t1 AT1G70920 57.480 127 43 2 103 226 27 145 6.82e-37 129
MS.gene011560.t1 AT5G06710 56.075 107 32 2 72 163 135 241 2.62e-27 107
MS.gene011560.t1 AT1G69780 44.444 126 65 1 79 199 47 172 1.57e-23 97.4
MS.gene011560.t1 AT2G01430 50.505 99 38 2 73 163 95 190 7.45e-21 88.2
MS.gene011560.t1 AT5G65310 34.759 187 103 5 90 269 33 207 6.22e-20 87.4
MS.gene011560.t1 AT5G65310 34.759 187 103 5 90 269 51 225 7.07e-20 87.8
MS.gene011560.t1 AT1G26960 46.875 96 51 0 104 199 63 158 9.02e-20 86.3
MS.gene011560.t1 AT3G01470 47.312 93 42 1 112 197 68 160 7.25e-18 81.3
MS.gene011560.t1 AT3G01220 42.857 119 60 4 90 201 63 180 2.26e-17 80.5
MS.gene011560.t1 AT5G15150 38.710 124 68 2 77 199 86 202 2.91e-17 80.5
MS.gene011560.t1 AT5G03790 46.067 89 48 0 112 200 77 165 4.17e-17 78.6
MS.gene011560.t1 AT4G40060 45.361 97 46 1 110 199 57 153 1.09e-16 78.6
MS.gene011560.t1 AT2G22430 46.875 96 47 1 110 201 60 155 2.23e-16 77.8
MS.gene011560.t1 AT1G27045 38.849 139 66 3 75 200 31 163 3.09e-16 76.6
MS.gene011560.t1 AT1G27045 43.119 109 50 2 75 177 31 133 3.72e-16 75.9
MS.gene011560.t1 AT1G27045 57.576 66 28 0 112 177 17 82 4.07e-16 74.7
MS.gene011560.t1 AT1G27045 57.576 66 28 0 112 177 25 90 4.29e-16 74.7
MS.gene011560.t1 AT1G27045 57.576 66 28 0 112 177 25 90 4.29e-16 74.7
MS.gene011560.t1 AT2G46680 36.508 126 71 1 115 240 35 151 8.69e-16 75.5
MS.gene011560.t1 AT2G46680 43.158 95 50 1 115 205 35 129 9.67e-16 75.5
MS.gene011560.t1 AT5G03790 43.956 91 51 0 112 202 77 167 1.66e-14 70.5
MS.gene011560.t1 AT2G36610 38.776 98 52 1 111 200 70 167 5.31e-14 68.9
MS.gene011560.t1 AT4G36740 37.624 101 63 0 98 198 42 142 1.38e-13 68.6
MS.gene011560.t1 AT4G36740 37.624 101 63 0 98 198 41 141 1.50e-13 68.6
MS.gene011560.t1 AT3G61890 42.169 83 48 0 115 197 33 115 3.93e-13 67.8
MS.gene011560.t1 AT2G18550 44.828 87 48 0 112 198 61 147 8.73e-13 66.2
MS.gene011560.t1 AT5G53980 36.207 116 70 1 112 223 11 126 2.40e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATTAATTACGGGATTA+AGG 0.204975 8.4:-23348082 None:intergenic
CAAACCTAGCTCTTCTGTTT+TGG 0.228150 8.4:-23348248 None:intergenic
TCCTCGTACAGATCGGAAAT+TGG 0.274377 8.4:+23347776 MS.gene011560:intron
AAAATCTAACGGAGGAAAAT+AGG 0.298194 8.4:+23348398 MS.gene011560:CDS
CCCCTGCTTCTTCTTCCTCT+TGG 0.308178 8.4:-23347875 None:intergenic
TCCATCCAAACTTTCACTTC+AGG 0.343155 8.4:+23347564 MS.gene011560:CDS
CTTCTGCTCCACTCACAAAT+AGG 0.358077 8.4:+23348626 MS.gene011560:CDS
CATCCTCGGGCTGTGCCTAT+AGG 0.371086 8.4:+23348592 MS.gene011560:CDS
TAGATTAATTACGGGATTAA+GGG 0.388703 8.4:-23348081 None:intergenic
ATCTAACCGTCACCATTCTA+TGG 0.389555 8.4:+23348561 MS.gene011560:CDS
GCATACCTGAAGTGAAAGTT+TGG 0.401576 8.4:-23347569 None:intergenic
GCACAGCCCGAGGATGGGCT+TGG 0.401813 8.4:-23348585 None:intergenic
TTTCTTCAAGAATAGCTGAT+TGG 0.405030 8.4:-23348040 None:intergenic
AGCACAGTTTCAAGTGTTAG+TGG 0.413647 8.4:+23347912 MS.gene011560:CDS
ACACTTGAAACTGTGCTGTT+TGG 0.414647 8.4:-23347906 None:intergenic
GAAGAAGCCCATGGGCCTAT+AGG 0.425417 8.4:-23348607 None:intergenic
CACAGCCCGAGGATGGGCTT+GGG 0.426678 8.4:-23348584 None:intergenic
TACGAGGAATCGACGTGAAT+CGG 0.436608 8.4:+23347829 MS.gene011560:CDS
GCATCAACACAAGCATTAGA+TGG 0.449100 8.4:-23348538 None:intergenic
TGGCATTCAATAGCTGTAGA+TGG 0.450684 8.4:-23347855 None:intergenic
AACCAGACTTCTACTTGTCT+TGG 0.452242 8.4:-23348225 None:intergenic
CTTTATGATGATGATTGAAA+AGG 0.455188 8.4:+23347479 None:intergenic
CTATGGCCCAAGCCCATCCT+CGG 0.455411 8.4:+23348578 MS.gene011560:CDS
GGCTGTGCCTATAGGCCCAT+GGG 0.462021 8.4:+23348600 MS.gene011560:CDS
TAAAACGCCGTGATCATTGA+CGG 0.467131 8.4:-23348663 None:intergenic
GGGCTGTGCCTATAGGCCCA+TGG 0.472141 8.4:+23348599 MS.gene011560:CDS
TCATTTGCATGTAAAATTGT+GGG 0.480628 8.4:-23348465 None:intergenic
TTGGCACTTGCAAAGCAACT+TGG 0.482027 8.4:+23348195 MS.gene011560:CDS
GGGCACATAGTAAGAGTAGT+TGG 0.484138 8.4:-23348493 None:intergenic
CTATAGGCACAGCCCGAGGA+TGG 0.486518 8.4:-23348591 None:intergenic
GTCCAAGACAAGTAGAAGTC+TGG 0.488744 8.4:+23348223 MS.gene011560:CDS
TGCCAAGAGGAAGAAGAAGC+AGG 0.500256 8.4:+23347873 MS.gene011560:CDS
GATCATGACGTGGAAAATAG+AGG 0.505863 8.4:+23347957 MS.gene011560:CDS
ATGATTGAAAAGGAAGACTT+GGG 0.506471 8.4:+23347489 MS.gene011560:CDS
GTGAAAGTTTGGATGGAAGA+TGG 0.511827 8.4:-23347558 None:intergenic
TTGATTGTGAAGTGTTGAAA+AGG 0.523538 8.4:+23348368 MS.gene011560:CDS
GATGGGCTTGGGCCATAGAA+TGG 0.526314 8.4:-23348573 None:intergenic
ACCTGAAGTGAAAGTTTGGA+TGG 0.531944 8.4:-23347565 None:intergenic
GATGATTGAAAAGGAAGACT+TGG 0.537309 8.4:+23347488 MS.gene011560:CDS
TATAGGCACAGCCCGAGGAT+GGG 0.537378 8.4:-23348590 None:intergenic
TATGGCCCAAGCCCATCCTC+GGG 0.537951 8.4:+23348579 MS.gene011560:CDS
GTCATTTGCATGTAAAATTG+TGG 0.542757 8.4:-23348466 None:intergenic
AAGAAGACGCTGAAACTGCT+AGG 0.546613 8.4:+23347994 MS.gene011560:CDS
GCCAAGAGGAAGAAGAAGCA+GGG 0.554990 8.4:+23347874 MS.gene011560:CDS
GAAACATGCAGAGGAGAGAG+TGG 0.568617 8.4:+23347798 MS.gene011560:CDS
GGTTCCAAAACAGAAGAGCT+AGG 0.575953 8.4:+23348244 MS.gene011560:CDS
ACAGCCACACGTTCACAAGA+AGG 0.580372 8.4:-23348514 None:intergenic
CACATAGTAAGAGTAGTTGG+TGG 0.588373 8.4:-23348490 None:intergenic
CATTTGCATGTAAAATTGTG+GGG 0.595232 8.4:-23348464 None:intergenic
CAGCCACACGTTCACAAGAA+GGG 0.595325 8.4:-23348513 None:intergenic
GGAAAATAGGAGACTACAGA+AGG 0.611602 8.4:+23348411 MS.gene011560:CDS
CTTGGGCCATAGAATGGTGA+CGG 0.617650 8.4:-23348567 None:intergenic
AGTGGAGCAGAAGAAGCCCA+TGG 0.620208 8.4:-23348616 None:intergenic
CCAAGAGGAAGAAGAAGCAG+GGG 0.620587 8.4:+23347875 MS.gene011560:CDS
GTGCCCTTCTTGTGAACGTG+TGG 0.623014 8.4:+23348510 MS.gene011560:CDS
GTGGAGCAGAAGAAGCCCAT+GGG 0.630169 8.4:-23348615 None:intergenic
AAGGTGCTGTGAAAATCTAA+CGG 0.636807 8.4:+23348387 MS.gene011560:CDS
TCAAACATCCTATTTGTGAG+TGG 0.652167 8.4:-23348634 None:intergenic
CGGAAATTGGAAACATGCAG+AGG 0.654897 8.4:+23347789 MS.gene011560:CDS
TACAGCTATTGAATGCCAAG+AGG 0.669451 8.4:+23347860 MS.gene011560:CDS
GGGCCTATAGGCACAGCCCG+AGG 0.674672 8.4:-23348595 None:intergenic
GATTCACGTCGATTCCTCGT+AGG 0.688742 8.4:-23347827 None:intergenic
GACAAAGCTGAAGCAAACAG+AGG 0.702705 8.4:+23348345 MS.gene011560:CDS
GTGCTGTGAAAATCTAACGG+AGG 0.721195 8.4:+23348390 MS.gene011560:CDS
GAGAGAAGAAGATCATGACG+TGG 0.729981 8.4:+23347947 MS.gene011560:CDS
GAGAGTGGAAAATACCTACG+AGG 0.764552 8.4:+23347813 MS.gene011560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATAAAATAATTA+AGG - chr8.4:23348126-23348145 None:intergenic 0.0%
!!! TGTTTATTTTTTTACTAATT+TGG + chr8.4:23348146-23348165 MS.gene011560:intron 10.0%
!!! TTATGATTTGAAATTATTAT+AGG + chr8.4:23348323-23348342 MS.gene011560:intron 10.0%
!! GTATTGAGATAGATTAATTA+CGG - chr8.4:23348093-23348112 None:intergenic 20.0%
!! TATTGAGATAGATTAATTAC+GGG - chr8.4:23348092-23348111 None:intergenic 20.0%
!!! AAATAATTAAGGAAGTTGAT+TGG - chr8.4:23348115-23348134 None:intergenic 20.0%
!!! ACAAGTATTTTTTTAGATCA+TGG + chr8.4:23347622-23347641 MS.gene011560:intron 20.0%
! ATAGATTAATTACGGGATTA+AGG - chr8.4:23348085-23348104 None:intergenic 25.0%
! GATCTAAAAAAATACTTGTG+TGG - chr8.4:23347621-23347640 None:intergenic 25.0%
! TAGATTAATTACGGGATTAA+GGG - chr8.4:23348084-23348103 None:intergenic 25.0%
! TCATTTGCATGTAAAATTGT+GGG - chr8.4:23348468-23348487 None:intergenic 25.0%
!!! TTTTGTTTAGAAGCAAAAGT+TGG + chr8.4:23348176-23348195 MS.gene011560:intron 25.0%
AAAATCTAACGGAGGAAAAT+AGG + chr8.4:23348398-23348417 MS.gene011560:CDS 30.0%
ATGATTGAAAAGGAAGACTT+GGG + chr8.4:23347489-23347508 MS.gene011560:CDS 30.0%
CATTTGCATGTAAAATTGTG+GGG - chr8.4:23348467-23348486 None:intergenic 30.0%
GTCATTTGCATGTAAAATTG+TGG - chr8.4:23348469-23348488 None:intergenic 30.0%
TTTCTTCAAGAATAGCTGAT+TGG - chr8.4:23348043-23348062 None:intergenic 30.0%
!! TTGATTGTGAAGTGTTGAAA+AGG + chr8.4:23348368-23348387 MS.gene011560:CDS 30.0%
CTGACAATACTGAAATCGTT+AGG - chr8.4:23347685-23347704 None:intergenic 35.0%
GATGATTGAAAAGGAAGACT+TGG + chr8.4:23347488-23347507 MS.gene011560:CDS 35.0%
TCAAACATCCTATTTGTGAG+TGG - chr8.4:23348637-23348656 None:intergenic 35.0%
TCAGTATTGTCAGTTGAGTT+AGG + chr8.4:23347692-23347711 MS.gene011560:intron 35.0%
TTAGATCATGGATTCAAACC+AGG + chr8.4:23347634-23347653 MS.gene011560:intron 35.0%
! TGATTTTTCCTCGTACAGAT+CGG + chr8.4:23347769-23347788 MS.gene011560:intron 35.0%
!! AAGGTGCTGTGAAAATCTAA+CGG + chr8.4:23348387-23348406 MS.gene011560:CDS 35.0%
AACCAGACTTCTACTTGTCT+TGG - chr8.4:23348228-23348247 None:intergenic 40.0%
ACCTGAAGTGAAAGTTTGGA+TGG - chr8.4:23347568-23347587 None:intergenic 40.0%
ACTTGTGTGGATCTAGAGAA+TGG - chr8.4:23347608-23347627 None:intergenic 40.0%
ATCTAACCGTCACCATTCTA+TGG + chr8.4:23348561-23348580 MS.gene011560:CDS 40.0%
CACATAGTAAGAGTAGTTGG+TGG - chr8.4:23348493-23348512 None:intergenic 40.0%
GATCATGACGTGGAAAATAG+AGG + chr8.4:23347957-23347976 MS.gene011560:CDS 40.0%
GCATACCTGAAGTGAAAGTT+TGG - chr8.4:23347572-23347591 None:intergenic 40.0%
GCATCAACACAAGCATTAGA+TGG - chr8.4:23348541-23348560 None:intergenic 40.0%
GGAAAATAGGAGACTACAGA+AGG + chr8.4:23348411-23348430 MS.gene011560:CDS 40.0%
GTGAAAGTTTGGATGGAAGA+TGG - chr8.4:23347561-23347580 None:intergenic 40.0%
TACAGCTATTGAATGCCAAG+AGG + chr8.4:23347860-23347879 MS.gene011560:CDS 40.0%
TCCATCCAAACTTTCACTTC+AGG + chr8.4:23347564-23347583 MS.gene011560:CDS 40.0%
TGGCATTCAATAGCTGTAGA+TGG - chr8.4:23347858-23347877 None:intergenic 40.0%
TTAGCATTTCGTAGTCATCC+TGG - chr8.4:23347655-23347674 None:intergenic 40.0%
! ACACTTGAAACTGTGCTGTT+TGG - chr8.4:23347909-23347928 None:intergenic 40.0%
! AGCACAGTTTCAAGTGTTAG+TGG + chr8.4:23347912-23347931 MS.gene011560:CDS 40.0%
!! CAAACCTAGCTCTTCTGTTT+TGG - chr8.4:23348251-23348270 None:intergenic 40.0%
AAGAAGACGCTGAAACTGCT+AGG + chr8.4:23347994-23348013 MS.gene011560:CDS 45.0%
CGGAAATTGGAAACATGCAG+AGG + chr8.4:23347789-23347808 MS.gene011560:CDS 45.0%
CTTCTGCTCCACTCACAAAT+AGG + chr8.4:23348626-23348645 MS.gene011560:CDS 45.0%
GACAAAGCTGAAGCAAACAG+AGG + chr8.4:23348345-23348364 MS.gene011560:CDS 45.0%
GAGAGAAGAAGATCATGACG+TGG + chr8.4:23347947-23347966 MS.gene011560:CDS 45.0%
GAGAGTGGAAAATACCTACG+AGG + chr8.4:23347813-23347832 MS.gene011560:CDS 45.0%
GGGCACATAGTAAGAGTAGT+TGG - chr8.4:23348496-23348515 None:intergenic 45.0%
GGTTCCAAAACAGAAGAGCT+AGG + chr8.4:23348244-23348263 MS.gene011560:CDS 45.0%
GTCCAAGACAAGTAGAAGTC+TGG + chr8.4:23348223-23348242 MS.gene011560:CDS 45.0%
GTGCTGTGAAAATCTAACGG+AGG + chr8.4:23348390-23348409 MS.gene011560:CDS 45.0%
TACGAGGAATCGACGTGAAT+CGG + chr8.4:23347829-23347848 MS.gene011560:CDS 45.0%
TCCAATTTCCGATCTGTACG+AGG - chr8.4:23347780-23347799 None:intergenic 45.0%
TCCTCGTACAGATCGGAAAT+TGG + chr8.4:23347776-23347795 MS.gene011560:intron 45.0%
TTGGCACTTGCAAAGCAACT+TGG + chr8.4:23348195-23348214 MS.gene011560:CDS 45.0%
ACAGCCACACGTTCACAAGA+AGG - chr8.4:23348517-23348536 None:intergenic 50.0%
CAGCCACACGTTCACAAGAA+GGG - chr8.4:23348516-23348535 None:intergenic 50.0%
CCAAGAGGAAGAAGAAGCAG+GGG + chr8.4:23347875-23347894 MS.gene011560:CDS 50.0%
CTTGGGCCATAGAATGGTGA+CGG - chr8.4:23348570-23348589 None:intergenic 50.0%
GAAACATGCAGAGGAGAGAG+TGG + chr8.4:23347798-23347817 MS.gene011560:CDS 50.0%
GCCAAGAGGAAGAAGAAGCA+GGG + chr8.4:23347874-23347893 MS.gene011560:CDS 50.0%
TGCCAAGAGGAAGAAGAAGC+AGG + chr8.4:23347873-23347892 MS.gene011560:CDS 50.0%
!! GATTCACGTCGATTCCTCGT+AGG - chr8.4:23347830-23347849 None:intergenic 50.0%
AGTGGAGCAGAAGAAGCCCA+TGG - chr8.4:23348619-23348638 None:intergenic 55.0%
CCCCTGCTTCTTCTTCCTCT+TGG - chr8.4:23347878-23347897 None:intergenic 55.0%
GAAGAAGCCCATGGGCCTAT+AGG - chr8.4:23348610-23348629 None:intergenic 55.0%
GTGCCCTTCTTGTGAACGTG+TGG + chr8.4:23348510-23348529 MS.gene011560:CDS 55.0%
GTGGAGCAGAAGAAGCCCAT+GGG - chr8.4:23348618-23348637 None:intergenic 55.0%
TATAGGCACAGCCCGAGGAT+GGG - chr8.4:23348593-23348612 None:intergenic 55.0%
! GATGGGCTTGGGCCATAGAA+TGG - chr8.4:23348576-23348595 None:intergenic 55.0%
CATCCTCGGGCTGTGCCTAT+AGG + chr8.4:23348592-23348611 MS.gene011560:CDS 60.0%
CTATAGGCACAGCCCGAGGA+TGG - chr8.4:23348594-23348613 None:intergenic 60.0%
CTATGGCCCAAGCCCATCCT+CGG + chr8.4:23348578-23348597 MS.gene011560:CDS 60.0%
GGCTGTGCCTATAGGCCCAT+GGG + chr8.4:23348600-23348619 MS.gene011560:CDS 60.0%
TATGGCCCAAGCCCATCCTC+GGG + chr8.4:23348579-23348598 MS.gene011560:CDS 60.0%
GGGCTGTGCCTATAGGCCCA+TGG + chr8.4:23348599-23348618 MS.gene011560:CDS 65.0%
! CACAGCCCGAGGATGGGCTT+GGG - chr8.4:23348587-23348606 None:intergenic 65.0%
GGGCCTATAGGCACAGCCCG+AGG - chr8.4:23348598-23348617 None:intergenic 70.0%
! GCACAGCCCGAGGATGGGCT+TGG - chr8.4:23348588-23348607 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 23347483 23348672 23347483 ID=MS.gene011560
chr8.4 mRNA 23347483 23348672 23347483 ID=MS.gene011560.t1;Parent=MS.gene011560
chr8.4 exon 23347483 23347585 23347483 ID=MS.gene011560.t1.exon1;Parent=MS.gene011560.t1
chr8.4 CDS 23347483 23347585 23347483 ID=cds.MS.gene011560.t1;Parent=MS.gene011560.t1
chr8.4 exon 23347787 23348091 23347787 ID=MS.gene011560.t1.exon2;Parent=MS.gene011560.t1
chr8.4 CDS 23347787 23348091 23347787 ID=cds.MS.gene011560.t1;Parent=MS.gene011560.t1
chr8.4 exon 23348186 23348265 23348186 ID=MS.gene011560.t1.exon3;Parent=MS.gene011560.t1
chr8.4 CDS 23348186 23348265 23348186 ID=cds.MS.gene011560.t1;Parent=MS.gene011560.t1
chr8.4 exon 23348345 23348672 23348345 ID=MS.gene011560.t1.exon4;Parent=MS.gene011560.t1
chr8.4 CDS 23348345 23348672 23348345 ID=cds.MS.gene011560.t1;Parent=MS.gene011560.t1
Gene Sequence

>MS.gene011560

ATGATGATGATTGAAAAGGAAGACTTGGGTTTGAGTCTTAGCTTGAACTTCTTTCACAATAACTCTTCTCACAAACCATCTTCCATCCAAACTTTCACTTCAGGTATGCATTTTTTTTTCTTCCATTCTCTAGATCCACACAAGTATTTTTTTAGATCATGGATTCAAACCAGGATGACTACGAAATGCTAAACTTAAACCTAACGATTTCAGTATTGTCAGTTGAGTTAGGTCTTACAGACACATTAAAGTTTTTAATTCAACAAAACATAAATGATATTCAAAATGATTTTTCCTCGTACAGATCGGAAATTGGAAACATGCAGAGGAGAGAGTGGAAAATACCTACGAGGAATCGACGTGAATCGGTTACCATCTACAGCTATTGAATGCCAAGAGGAAGAAGAAGCAGGGGTTTCATCTCCAAACAGCACAGTTTCAAGTGTTAGTGGAAAAAGAAGCTTGAGAGAAGAAGATCATGACGTGGAAAATAGAGGAAATATCAGTGATGAAGAAGACGCTGAAACTGCTAGGAAAAAACTTAGACTCTCTAAAGACCAATCAGCTATTCTTGAAGAAACTTTCAAAGAACACAATACCCTTAATCCCGTAATTAATCTATCTCAATACCAATCAACTTCCTTAATTATTTTATTAATTTTTTGTTTATTTTTTTACTAATTTGGTTTTTTATTTTGTTTAGAAGCAAAAGTTGGCACTTGCAAAGCAACTTGGTCTTCGTCCAAGACAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCTAGGTTTGTTATTTAAAAGTAAAATTTCAATTAAGCAATGATTTAATTAGTATTTTTAATTTATGATTTGAAATTATTATAGGACAAAGCTGAAGCAAACAGAGGTTGATTGTGAAGTGTTGAAAAGGTGCTGTGAAAATCTAACGGAGGAAAATAGGAGACTACAGAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCACAATTTTACATGCAAATGACTCCACCAACTACTCTTACTATGTGCCCTTCTTGTGAACGTGTGGCTGTTCCATCTAATGCTTGTGTTGATGCATCTAACCGTCACCATTCTATGGCCCAAGCCCATCCTCGGGCTGTGCCTATAGGCCCATGGGCTTCTTCTGCTCCACTCACAAATAGGATGTTTGATGTTTTCCGTCAATGA
Protein sequence

>MS.gene011560.t1

MMMIEKEDLGLSLSLNFFHNNSSHKPSSIQTFTSDRKLETCRGESGKYLRGIDVNRLPSTAIECQEEEEAGVSSPNSTVSSVSGKRSLREEDHDVENRGNISDEEDAETARKKLRLSKDQSAILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSNACVDASNRHHSMAQAHPRAVPIGPWASSAPLTNRMFDVFRQ