Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011656.t1 | GAU24828.1 | 79.6 | 54 | 11 | 0 | 1 | 54 | 1 | 54 | 1.60E-14 | 89.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011656.t1 | Q93ZB1 | 70.5 | 61 | 11 | 2 | 1 | 54 | 1 | 61 | 2.4e-14 | 80.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011656.t1 | A0A2Z6M1X8 | 79.6 | 54 | 11 | 0 | 1 | 54 | 1 | 54 | 1.2e-14 | 89.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011656.t1 | TF | C2C2-LSD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011656.t1 | MTR_4g098500 | 92.063 | 126 | 10 | 0 | 22 | 147 | 28 | 153 | 4.25e-79 | 231 |
| MS.gene011656.t1 | MTR_4g098500 | 92.000 | 125 | 10 | 0 | 23 | 147 | 3 | 127 | 6.83e-79 | 229 |
| MS.gene011656.t1 | MTR_4g098500 | 46.667 | 75 | 39 | 1 | 19 | 93 | 38 | 111 | 3.28e-12 | 60.1 |
| MS.gene011656.t1 | MTR_8g089310 | 74.545 | 110 | 28 | 0 | 25 | 134 | 2 | 111 | 1.62e-55 | 172 |
| MS.gene011656.t1 | MTR_8g089310 | 49.333 | 75 | 37 | 1 | 19 | 93 | 35 | 108 | 7.46e-14 | 65.9 |
| MS.gene011656.t1 | MTR_8g089310 | 74.545 | 110 | 28 | 0 | 25 | 134 | 15 | 124 | 2.02e-55 | 172 |
| MS.gene011656.t1 | MTR_8g089310 | 49.333 | 75 | 37 | 1 | 19 | 93 | 48 | 121 | 6.09e-14 | 66.2 |
| MS.gene011656.t1 | MTR_8g089310 | 74.545 | 110 | 28 | 0 | 25 | 134 | 49 | 158 | 2.51e-55 | 173 |
| MS.gene011656.t1 | MTR_2g047838 | 59.649 | 114 | 43 | 1 | 25 | 135 | 2 | 115 | 8.52e-46 | 147 |
| MS.gene011656.t1 | MTR_2g047838 | 47.297 | 74 | 38 | 1 | 20 | 93 | 39 | 111 | 3.92e-14 | 66.2 |
| MS.gene011656.t1 | MTR_4g088850 | 56.579 | 76 | 33 | 0 | 64 | 139 | 40 | 115 | 1.48e-24 | 92.4 |
| MS.gene011656.t1 | MTR_4g088850 | 57.333 | 75 | 32 | 0 | 64 | 138 | 40 | 114 | 4.78e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011656.t1 | AT1G32540 | 89.231 | 130 | 11 | 1 | 16 | 142 | 20 | 149 | 1.04e-78 | 230 |
| MS.gene011656.t1 | AT1G32540 | 89.231 | 130 | 11 | 1 | 16 | 142 | 20 | 149 | 1.04e-78 | 230 |
| MS.gene011656.t1 | AT1G32540 | 94.167 | 120 | 4 | 1 | 16 | 132 | 20 | 139 | 2.72e-76 | 224 |
| MS.gene011656.t1 | AT1G32540 | 95.652 | 115 | 5 | 0 | 21 | 135 | 61 | 175 | 2.95e-76 | 225 |
| MS.gene011656.t1 | AT1G32540 | 46.667 | 75 | 39 | 1 | 19 | 93 | 98 | 171 | 2.98e-12 | 61.6 |
| MS.gene011656.t1 | AT1G32540 | 91.954 | 87 | 4 | 1 | 16 | 99 | 20 | 106 | 2.63e-50 | 157 |
| MS.gene011656.t1 | AT1G32540 | 91.954 | 87 | 4 | 1 | 16 | 99 | 20 | 106 | 2.63e-50 | 157 |
| MS.gene011656.t1 | AT1G32540 | 93.671 | 79 | 5 | 0 | 21 | 99 | 61 | 139 | 2.84e-48 | 152 |
| MS.gene011656.t1 | AT4G20380 | 60.656 | 122 | 37 | 3 | 25 | 135 | 2 | 123 | 2.39e-40 | 132 |
| MS.gene011656.t1 | AT4G20380 | 61.157 | 121 | 36 | 3 | 25 | 134 | 7 | 127 | 2.72e-40 | 134 |
| MS.gene011656.t1 | AT4G20380 | 61.157 | 121 | 36 | 3 | 25 | 134 | 7 | 127 | 2.72e-40 | 134 |
| MS.gene011656.t1 | AT4G20380 | 61.157 | 121 | 36 | 3 | 25 | 134 | 2 | 122 | 3.03e-40 | 134 |
| MS.gene011656.t1 | AT4G20380 | 61.157 | 121 | 36 | 3 | 25 | 134 | 2 | 122 | 3.03e-40 | 134 |
| MS.gene011656.t1 | AT4G20380 | 61.157 | 121 | 36 | 3 | 25 | 134 | 2 | 122 | 3.03e-40 | 134 |
| MS.gene011656.t1 | AT4G20380 | 61.157 | 121 | 36 | 3 | 25 | 134 | 2 | 122 | 3.03e-40 | 134 |
| MS.gene011656.t1 | AT4G20380 | 61.157 | 121 | 36 | 3 | 25 | 134 | 2 | 122 | 3.03e-40 | 134 |
| MS.gene011656.t1 | AT4G20380 | 51.020 | 147 | 35 | 3 | 25 | 134 | 2 | 148 | 6.60e-37 | 126 |
| MS.gene011656.t1 | AT4G21610 | 53.409 | 88 | 41 | 0 | 63 | 150 | 57 | 144 | 8.81e-28 | 101 |
| MS.gene011656.t1 | AT4G21610 | 60.274 | 73 | 29 | 0 | 63 | 135 | 57 | 129 | 6.08e-26 | 96.3 |
Find 35 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGTCCAAGTACAGTAAA+AGG | 0.221457 | 8.2:+23780412 | MS.gene011656:CDS |
| CAGAGTCAACTTGTGTGTTC+TGG | 0.355331 | 8.2:+23779218 | MS.gene011656:CDS |
| ATGCTACTTATGTATCAATA+TGG | 0.369271 | 8.2:+23779755 | MS.gene011656:CDS |
| TTTGTTGGAGGTGTTGTATA+TGG | 0.389709 | 8.2:-23778660 | None:intergenic |
| ATTGCAAACTGCACATTTCA+CGG | 0.413666 | 8.2:-23779786 | None:intergenic |
| GGATAAGGAGCAAGTGGAAC+TGG | 0.441155 | 8.2:-23778621 | None:intergenic |
| GTGTATTGTGACAGCAAATC+AGG | 0.446436 | 8.2:+23779703 | MS.gene011656:intron |
| CATACAGAAGTGGCTCCAAC+TGG | 0.466065 | 8.2:-23779263 | None:intergenic |
| AAAGTGAAGATACCATTTGT+TGG | 0.467296 | 8.2:-23778675 | None:intergenic |
| GGATGTACATGAGTAAAGTA+TGG | 0.469461 | 8.2:-23779485 | None:intergenic |
| GTCACAGCAGTGCCACCTCC+TGG | 0.473850 | 8.2:+23779305 | MS.gene011656:CDS |
| GAAATGGCTCAGTTAGTTTG+TGG | 0.475051 | 8.2:+23779456 | MS.gene011656:CDS |
| GCTGGAGCAGGAGCTGGATA+AGG | 0.475651 | 8.2:-23778636 | None:intergenic |
| AAAAGGGTAAAGCAGTCAAA+TGG | 0.480658 | 8.2:+23780429 | MS.gene011656:CDS |
| TGTATTCACAGGCACAGAAA+TGG | 0.481941 | 8.2:+23779440 | MS.gene011656:intron |
| TATGGAGCTGGAGCAGGAGC+TGG | 0.490095 | 8.2:-23778642 | None:intergenic |
| TATACAACACCTCCAACAAA+TGG | 0.513032 | 8.2:+23778663 | MS.gene011656:CDS |
| GTTGTATATGGAGCTGGAGC+AGG | 0.513741 | 8.2:-23778648 | None:intergenic |
| TCACACAGTCAATCTAGCTC+TGG | 0.518089 | 8.2:+23779539 | MS.gene011656:CDS |
| AACCTTCTTATGTATCCAGT+TGG | 0.523909 | 8.2:+23779248 | MS.gene011656:CDS |
| GGAGGTGTTGTATATGGAGC+TGG | 0.527136 | 8.2:-23778654 | None:intergenic |
| AAGGTCCAAGTACAGTAAAA+GGG | 0.533894 | 8.2:+23780413 | MS.gene011656:CDS |
| GTGAAGATACCATTTGTTGG+AGG | 0.564232 | 8.2:-23778672 | None:intergenic |
| GGAGCTGGATAAGGAGCAAG+TGG | 0.568412 | 8.2:-23778627 | None:intergenic |
| CTCCAACTGGATACATAAGA+AGG | 0.572621 | 8.2:-23779250 | None:intergenic |
| TATTTCATCATACCAGGAGG+TGG | 0.599736 | 8.2:-23779317 | None:intergenic |
| AACAGCACAGCATACAGAAG+TGG | 0.604154 | 8.2:-23779273 | None:intergenic |
| ATGGCTCAGTTAGTTTGTGG+AGG | 0.620989 | 8.2:+23779459 | MS.gene011656:CDS |
| ACAGTCAATCTAGCTCTGGA+AGG | 0.636792 | 8.2:+23779543 | MS.gene011656:CDS |
| ATGTCAACTGTGGTAACTGC+AGG | 0.637282 | 8.2:+23779732 | MS.gene011656:CDS |
| AACTATACTGACCCCAACTG+AGG | 0.675495 | 8.2:-23779816 | None:intergenic |
| ATTGAACACTCGTCGCTCCG+CGG | 0.692743 | 8.2:-23779506 | None:intergenic |
| ACTTTACTCATGTACATCCG+CGG | 0.709515 | 8.2:+23779489 | MS.gene011656:CDS |
| CAGGTGGCACATGTCAACTG+TGG | 0.714575 | 8.2:+23779722 | MS.gene011656:CDS |
| TATTGTGACAGCAAATCAGG+TGG | 0.775426 | 8.2:+23779706 | MS.gene011656:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATACAAAATTTACTAAA+TGG | + | chr8.2:23778892-23778911 | MS.gene011656:intron | 10.0% |
| !! | ATAATAGTATATGATTTATT+AGG | - | chr8.2:23780028-23780047 | None:intergenic | 10.0% |
| !! | AAGTATGTGAAAGAAATAAA+TGG | - | chr8.2:23780373-23780392 | None:intergenic | 20.0% |
| !! | AATCATATACTATTATAGCA+AGG | + | chr8.2:23780032-23780051 | MS.gene011656:intron | 20.0% |
| !! | ATTCTTAAAACTACAAAGTA+CGG | - | chr8.2:23779678-23779697 | None:intergenic | 20.0% |
| !! | GTACTTAAATATCAATCTTA+AGG | + | chr8.2:23780085-23780104 | MS.gene011656:intron | 20.0% |
| !!! | ATGTCTAATTTTAGTATTGA+TGG | + | chr8.2:23778840-23778859 | MS.gene011656:intron | 20.0% |
| !!! | TCTTATTTCTTATCCATATT+TGG | + | chr8.2:23778794-23778813 | MS.gene011656:intron | 20.0% |
| !!! | TTATTTCTTTCACATACTTT+TGG | + | chr8.2:23780374-23780393 | MS.gene011656:intron | 20.0% |
| ! | AAAATAACTCTATACATGTG+AGG | - | chr8.2:23780145-23780164 | None:intergenic | 25.0% |
| ! | ACAAAATTTACTAAATGGAG+AGG | + | chr8.2:23778897-23778916 | MS.gene011656:intron | 25.0% |
| ! | CCAATTTCTTATCAGATAAA+GGG | + | chr8.2:23778932-23778951 | MS.gene011656:intron | 25.0% |
| ! | TATTTAAGTACCAAAAACCA+AGG | - | chr8.2:23780076-23780095 | None:intergenic | 25.0% |
| ! | TCCAATTTCTTATCAGATAA+AGG | + | chr8.2:23778931-23778950 | MS.gene011656:intron | 25.0% |
| ! | TGAGTTAAATTGTTGTGATT+CGG | + | chr8.2:23779649-23779668 | MS.gene011656:intron | 25.0% |
| ! | TTCTCTTCAAAATAGAAAAG+AGG | - | chr8.2:23779863-23779882 | None:intergenic | 25.0% |
| !! | AAAAATGTTGTTTGAATGCT+AGG | + | chr8.2:23779191-23779210 | MS.gene011656:intron | 25.0% |
| !! | ATGCTACTTATGTATCAATA+TGG | + | chr8.2:23779755-23779774 | MS.gene011656:CDS | 25.0% |
| !! | GCTTTTTGTTAAAATCACAT+AGG | - | chr8.2:23779074-23779093 | None:intergenic | 25.0% |
| !!! | TTAAGCGTTTTTGTTTGAAT+TGG | + | chr8.2:23780188-23780207 | MS.gene011656:intron | 25.0% |
| !!! | TTCTACTTTTGTTCAATAAG+TGG | + | chr8.2:23780301-23780320 | MS.gene011656:intron | 25.0% |
| !!! | TTGATGCATGTTCTTTATTT+TGG | + | chr8.2:23778725-23778744 | MS.gene011656:intron | 25.0% |
| AAAGTGAAGATACCATTTGT+TGG | - | chr8.2:23778678-23778697 | None:intergenic | 30.0% | |
| AGAGACCTAATAACTGATAA+GGG | - | chr8.2:23779349-23779368 | None:intergenic | 30.0% | |
| ATAAAGAACATGCATCAATG+AGG | - | chr8.2:23778723-23778742 | None:intergenic | 30.0% | |
| ATATCACAAAGTGAAGATTC+AGG | - | chr8.2:23779403-23779422 | None:intergenic | 30.0% | |
| ATTTACCTTACCAAAAGATG+TGG | - | chr8.2:23780275-23780294 | None:intergenic | 30.0% | |
| CCATACCATAAAACATTAAG+TGG | - | chr8.2:23779128-23779147 | None:intergenic | 30.0% | |
| CCCTTTATCTGATAAGAAAT+TGG | - | chr8.2:23778935-23778954 | None:intergenic | 30.0% | |
| GAAGAATATTTCATCATACC+AGG | - | chr8.2:23779326-23779345 | None:intergenic | 30.0% | |
| GTGAATACATCAGGTAAATA+TGG | - | chr8.2:23779429-23779448 | None:intergenic | 30.0% | |
| TACTTTATGCTGATGAATTG+TGG | + | chr8.2:23778757-23778776 | MS.gene011656:intron | 30.0% | |
| TAGAGACCTAATAACTGATA+AGG | - | chr8.2:23779350-23779369 | None:intergenic | 30.0% | |
| TATTTACCTGATGTATTCAC+AGG | + | chr8.2:23779429-23779448 | MS.gene011656:intron | 30.0% | |
| TCTAAACATGCACTAAAGAT+AGG | - | chr8.2:23779020-23779039 | None:intergenic | 30.0% | |
| TCTTATCCATATTTGGAAGA+AGG | + | chr8.2:23778801-23778820 | MS.gene011656:intron | 30.0% | |
| TGAAAGAAATAAATGGTGCT+TGG | - | chr8.2:23780366-23780385 | None:intergenic | 30.0% | |
| TTTAGTCCTTCTTCCAAATA+TGG | - | chr8.2:23778810-23778829 | None:intergenic | 30.0% | |
| ! | AAAAACCACATCTTTTGGTA+AGG | + | chr8.2:23780267-23780286 | MS.gene011656:intron | 30.0% |
| ! | CCACTTAATGTTTTATGGTA+TGG | + | chr8.2:23779125-23779144 | MS.gene011656:intron | 30.0% |
| ! | TATGCAAAAACCACATCTTT+TGG | + | chr8.2:23780262-23780281 | MS.gene011656:intron | 30.0% |
| ! | TGTTTTATGGTATGGAAATG+TGG | + | chr8.2:23779133-23779152 | MS.gene011656:intron | 30.0% |
| !!! | AAACTATGTCTTGTTTTGCA+AGG | - | chr8.2:23779907-23779926 | None:intergenic | 30.0% |
| AAAAGGGTAAAGCAGTCAAA+TGG | + | chr8.2:23780429-23780448 | MS.gene011656:CDS | 35.0% | |
| AAAGGTCCAAGTACAGTAAA+AGG | + | chr8.2:23780412-23780431 | MS.gene011656:CDS | 35.0% | |
| AACCTTCTTATGTATCCAGT+TGG | + | chr8.2:23779248-23779267 | MS.gene011656:CDS | 35.0% | |
| AAGGTCCAAGTACAGTAAAA+GGG | + | chr8.2:23780413-23780432 | MS.gene011656:CDS | 35.0% | |
| ATTGCAAACTGCACATTTCA+CGG | - | chr8.2:23779789-23779808 | None:intergenic | 35.0% | |
| GAAAAGAGGAAAACGTAGTA+TGG | - | chr8.2:23779849-23779868 | None:intergenic | 35.0% | |
| GAATATTTCATCATACCAGG+AGG | - | chr8.2:23779323-23779342 | None:intergenic | 35.0% | |
| GAGACCTAATAACTGATAAG+GGG | - | chr8.2:23779348-23779367 | None:intergenic | 35.0% | |
| GGATGTACATGAGTAAAGTA+TGG | - | chr8.2:23779488-23779507 | None:intergenic | 35.0% | |
| TATACAACACCTCCAACAAA+TGG | + | chr8.2:23778663-23778682 | MS.gene011656:CDS | 35.0% | |
| TCAGATAAAGGGAGATATGT+TGG | + | chr8.2:23778943-23778962 | MS.gene011656:intron | 35.0% | |
| TCTTCCCCTTATCAGTTATT+AGG | + | chr8.2:23779341-23779360 | MS.gene011656:intron | 35.0% | |
| TTATGCTGATGAATTGTGGT+TGG | + | chr8.2:23778761-23778780 | MS.gene011656:intron | 35.0% | |
| ! | ATGTTACTGAATGATGATGC+AGG | + | chr8.2:23779966-23779985 | MS.gene011656:intron | 35.0% |
| ! | CAATTTTGTTACCTCAGTTG+GGG | + | chr8.2:23779805-23779824 | MS.gene011656:CDS | 35.0% |
| ! | CTTTACCCTTTTACTGTACT+TGG | - | chr8.2:23780421-23780440 | None:intergenic | 35.0% |
| ! | GCAATTTTGTTACCTCAGTT+GGG | + | chr8.2:23779804-23779823 | MS.gene011656:CDS | 35.0% |
| ! | GGACCTTTTCTATTTCCAAA+AGG | - | chr8.2:23780400-23780419 | None:intergenic | 35.0% |
| ! | TGCAATTTTGTTACCTCAGT+TGG | + | chr8.2:23779803-23779822 | MS.gene011656:CDS | 35.0% |
| !! | CTGCTATATTTTTGTGTGTG+TGG | + | chr8.2:23780336-23780355 | MS.gene011656:intron | 35.0% |
| !! | TGGCCTTTTGGAAATAGAAA+AGG | + | chr8.2:23780394-23780413 | MS.gene011656:intron | 35.0% |
| !! | TTCACATACTTTTGGCCTTT+TGG | + | chr8.2:23780382-23780401 | MS.gene011656:intron | 35.0% |
| !! | TTTGTTGGAGGTGTTGTATA+TGG | - | chr8.2:23778663-23778682 | None:intergenic | 35.0% |
| !!! | CAGTGCCACTTAATGTTTTA+TGG | + | chr8.2:23779120-23779139 | MS.gene011656:intron | 35.0% |
| ACTTTACTCATGTACATCCG+CGG | + | chr8.2:23779489-23779508 | MS.gene011656:CDS | 40.0% | |
| CATTACAGACTCTACAACCT+TGG | + | chr8.2:23780056-23780075 | MS.gene011656:intron | 40.0% | |
| CTCCAACTGGATACATAAGA+AGG | - | chr8.2:23779253-23779272 | None:intergenic | 40.0% | |
| GGTTCAAATCTGAGTCTTAG+AGG | - | chr8.2:23778999-23779018 | None:intergenic | 40.0% | |
| GTGTATTGTGACAGCAAATC+AGG | + | chr8.2:23779703-23779722 | MS.gene011656:intron | 40.0% | |
| TATTGTGACAGCAAATCAGG+TGG | + | chr8.2:23779706-23779725 | MS.gene011656:intron | 40.0% | |
| TATTTCATCATACCAGGAGG+TGG | - | chr8.2:23779320-23779339 | None:intergenic | 40.0% | |
| TGTATTCACAGGCACAGAAA+TGG | + | chr8.2:23779440-23779459 | MS.gene011656:intron | 40.0% | |
| ! | ACAGTGAGTTTTGCGAAATC+AGG | + | chr8.2:23779043-23779062 | MS.gene011656:intron | 40.0% |
| ! | CAGTGAGTTTTGCGAAATCA+GGG | + | chr8.2:23779044-23779063 | MS.gene011656:intron | 40.0% |
| ! | GAAATGGCTCAGTTAGTTTG+TGG | + | chr8.2:23779456-23779475 | MS.gene011656:CDS | 40.0% |
| ! | GTGAAGATACCATTTGTTGG+AGG | - | chr8.2:23778675-23778694 | None:intergenic | 40.0% |
| !! | GACTCTACAACCTTGGTTTT+TGG | + | chr8.2:23780063-23780082 | MS.gene011656:intron | 40.0% |
| !!! | GTTATTTTTCCCTTGCGTGA+CGG | + | chr8.2:23780157-23780176 | MS.gene011656:intron | 40.0% |
| AACAGCACAGCATACAGAAG+TGG | - | chr8.2:23779276-23779295 | None:intergenic | 45.0% | |
| AACTATACTGACCCCAACTG+AGG | - | chr8.2:23779819-23779838 | None:intergenic | 45.0% | |
| AATACAATCACCGTCACGCA+AGG | - | chr8.2:23780170-23780189 | None:intergenic | 45.0% | |
| ATACAATCACCGTCACGCAA+GGG | - | chr8.2:23780169-23780188 | None:intergenic | 45.0% | |
| ATGTCAACTGTGGTAACTGC+AGG | + | chr8.2:23779732-23779751 | MS.gene011656:CDS | 45.0% | |
| CAGAGTCAACTTGTGTGTTC+TGG | + | chr8.2:23779218-23779237 | MS.gene011656:CDS | 45.0% | |
| TCTGTGCCTGTGAATACATC+AGG | - | chr8.2:23779438-23779457 | None:intergenic | 45.0% | |
| ! | TCACACAGTCAATCTAGCTC+TGG | + | chr8.2:23779539-23779558 | MS.gene011656:CDS | 45.0% |
| !! | ACAGTCAATCTAGCTCTGGA+AGG | + | chr8.2:23779543-23779562 | MS.gene011656:CDS | 45.0% |
| !! | ATGGCTCAGTTAGTTTGTGG+AGG | + | chr8.2:23779459-23779478 | MS.gene011656:CDS | 45.0% |
| CATACAGAAGTGGCTCCAAC+TGG | - | chr8.2:23779266-23779285 | None:intergenic | 50.0% | |
| GGATAAGGAGCAAGTGGAAC+TGG | - | chr8.2:23778624-23778643 | None:intergenic | 50.0% | |
| GTTGTATATGGAGCTGGAGC+AGG | - | chr8.2:23778651-23778670 | None:intergenic | 50.0% | |
| !! | GGAGGTGTTGTATATGGAGC+TGG | - | chr8.2:23778657-23778676 | None:intergenic | 50.0% |
| ATTGAACACTCGTCGCTCCG+CGG | - | chr8.2:23779509-23779528 | None:intergenic | 55.0% | |
| CAGGTGGCACATGTCAACTG+TGG | + | chr8.2:23779722-23779741 | MS.gene011656:CDS | 55.0% | |
| GGAGCTGGATAAGGAGCAAG+TGG | - | chr8.2:23778630-23778649 | None:intergenic | 55.0% | |
| GCTGGAGCAGGAGCTGGATA+AGG | - | chr8.2:23778639-23778658 | None:intergenic | 60.0% | |
| TATGGAGCTGGAGCAGGAGC+TGG | - | chr8.2:23778645-23778664 | None:intergenic | 60.0% | |
| GCAGGCCTCAGCAAGCACGA+CGG | + | chr8.2:23779984-23780003 | MS.gene011656:intron | 65.0% | |
| GTCACAGCAGTGCCACCTCC+TGG | + | chr8.2:23779305-23779324 | MS.gene011656:CDS | 65.0% | |
| ! | CTGCTCCGTCGTGCTTGCTG+AGG | - | chr8.2:23779992-23780011 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 23778618 | 23780464 | 23778618 | ID=MS.gene011656 |
| chr8.2 | mRNA | 23778618 | 23780464 | 23778618 | ID=MS.gene011656.t1;Parent=MS.gene011656 |
| chr8.2 | exon | 23778618 | 23778684 | 23778618 | ID=MS.gene011656.t1.exon1;Parent=MS.gene011656.t1 |
| chr8.2 | CDS | 23778618 | 23778684 | 23778618 | ID=cds.MS.gene011656.t1;Parent=MS.gene011656.t1 |
| chr8.2 | exon | 23779213 | 23779326 | 23779213 | ID=MS.gene011656.t1.exon2;Parent=MS.gene011656.t1 |
| chr8.2 | CDS | 23779213 | 23779326 | 23779213 | ID=cds.MS.gene011656.t1;Parent=MS.gene011656.t1 |
| chr8.2 | exon | 23779451 | 23779564 | 23779451 | ID=MS.gene011656.t1.exon3;Parent=MS.gene011656.t1 |
| chr8.2 | CDS | 23779451 | 23779564 | 23779451 | ID=cds.MS.gene011656.t1;Parent=MS.gene011656.t1 |
| chr8.2 | exon | 23779717 | 23779826 | 23779717 | ID=MS.gene011656.t1.exon4;Parent=MS.gene011656.t1 |
| chr8.2 | CDS | 23779717 | 23779826 | 23779717 | ID=cds.MS.gene011656.t1;Parent=MS.gene011656.t1 |
| chr8.2 | exon | 23780411 | 23780464 | 23780411 | ID=MS.gene011656.t1.exon5;Parent=MS.gene011656.t1 |
| chr8.2 | CDS | 23780411 | 23780464 | 23780411 | ID=cds.MS.gene011656.t1;Parent=MS.gene011656.t1 |
| Gene Sequence |
| Protein sequence |
