AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011662

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011662.t1 MTR_4g098035 82.834 367 32 5 1 361 1 342 0.0 591
MS.gene011662.t1 MTR_0246s0050 82.370 346 30 5 22 361 1 321 0.0 553
MS.gene011662.t1 MTR_0246s0020 53.030 396 134 15 1 361 1 379 7.63e-110 326
MS.gene011662.t1 MTR_6g047570 49.869 381 126 16 1 361 1 336 1.36e-95 288
MS.gene011662.t1 MTR_0246s0020 50.258 388 139 16 1 353 1 369 1.15e-94 287
MS.gene011662.t1 MTR_0011s0210 47.244 381 160 14 1 361 1 360 1.00e-90 276
MS.gene011662.t1 MTR_0011s0260 47.368 380 159 14 1 360 1 359 1.13e-89 274
MS.gene011662.t1 MTR_4g066380 47.514 362 151 9 1 360 1 325 1.77e-89 272
MS.gene011662.t1 MTR_4g066460 47.123 365 153 12 1 361 1 329 5.30e-85 261
MS.gene011662.t1 MTR_4g067010 46.154 364 146 14 1 359 1 319 2.89e-82 254
MS.gene011662.t1 MTR_0250s0040 49.815 271 95 10 101 361 26 265 4.08e-68 215
MS.gene011662.t1 MTR_6g047550 49.259 270 98 13 1 259 1 242 1.69e-57 188
MS.gene011662.t1 MTR_5g014520 41.311 351 162 10 17 360 20 333 4.85e-57 189
MS.gene011662.t1 MTR_5g014560 50.490 204 86 5 170 360 106 307 5.57e-53 177
MS.gene011662.t1 MTR_2g010450 36.721 305 160 8 77 359 60 353 1.15e-43 154
MS.gene011662.t1 MTR_5g014600 37.692 260 126 4 124 356 84 334 3.24e-43 153
MS.gene011662.t1 MTR_4g009540 38.281 256 129 7 120 357 87 331 5.22e-40 144
MS.gene011662.t1 MTR_4g097940 40.984 183 100 3 175 351 140 320 8.37e-39 141
MS.gene011662.t1 MTR_4g097920 40.437 183 101 3 175 351 125 305 1.44e-36 134
MS.gene011662.t1 MTR_4g097920 40.437 183 101 3 175 351 140 320 1.86e-36 135
MS.gene011662.t1 MTR_4g092700 39.691 194 107 2 174 359 142 333 9.39e-36 133
MS.gene011662.t1 MTR_8g009020 34.483 261 130 8 111 352 80 318 2.84e-35 132
MS.gene011662.t1 MTR_5g014640 31.973 294 179 6 81 356 33 323 3.84e-35 131
MS.gene011662.t1 MTR_2g104560 37.912 182 105 2 183 358 47 226 1.74e-34 127
MS.gene011662.t1 MTR_4g097950 40.104 192 94 2 184 358 64 251 2.87e-33 124
MS.gene011662.t1 MTR_2g104490 37.963 216 114 8 146 351 97 302 2.92e-33 126
MS.gene011662.t1 MTR_4g009110 40.394 203 102 5 172 357 150 350 3.04e-33 127
MS.gene011662.t1 MTR_4g009540 37.872 235 117 7 120 336 87 310 3.62e-33 125
MS.gene011662.t1 MTR_2g104550 32.296 257 145 6 116 360 76 315 7.08e-33 125
MS.gene011662.t1 MTR_7g080780 29.137 278 167 6 80 357 69 316 3.02e-29 115
MS.gene011662.t1 MTR_2g104500 35.780 218 117 6 155 357 63 272 3.17e-29 114
MS.gene011662.t1 MTR_7g080780 29.137 278 167 6 80 357 82 329 3.38e-29 115
MS.gene011662.t1 MTR_8g009010 30.888 259 128 7 103 352 51 267 4.26e-27 109
MS.gene011662.t1 MTR_2g104490 36.816 201 107 8 146 336 97 287 6.99e-27 108
MS.gene011662.t1 MTR_2g104650 35.616 219 126 7 147 355 54 267 1.22e-26 107
MS.gene011662.t1 MTR_2g104530 32.701 211 126 4 155 352 62 269 1.28e-26 107
MS.gene011662.t1 MTR_4g009510 38.411 151 89 2 204 354 56 202 2.64e-26 104
MS.gene011662.t1 MTR_4g009420 40.288 139 71 2 216 354 68 194 2.87e-25 101
MS.gene011662.t1 MTR_7g451650 38.849 139 81 2 216 354 60 194 5.94e-25 100
MS.gene011662.t1 MTR_8g069740 36.145 166 96 4 179 335 101 265 2.09e-23 98.2
MS.gene011662.t1 MTR_7g050350 37.778 135 80 2 220 354 2 132 2.18e-23 94.7
MS.gene011662.t1 MTR_7g451650 37.778 135 80 2 220 354 2 132 2.18e-23 94.7
MS.gene011662.t1 MTR_2g104590 31.937 191 90 5 179 355 58 222 1.88e-20 89.4
MS.gene011662.t1 MTR_7g451650 37.190 121 72 2 216 336 60 176 5.22e-18 81.6
MS.gene011662.t1 MTR_4g009420 37.903 124 65 2 213 336 65 176 5.56e-18 81.6
MS.gene011662.t1 MTR_5g014550 43.089 123 60 3 220 334 54 174 5.94e-18 81.6
MS.gene011662.t1 MTR_7g117670 31.373 153 96 4 190 338 402 549 5.28e-15 76.6
MS.gene011662.t1 MTR_1g072320 31.690 142 83 2 190 317 470 611 4.14e-14 73.9
MS.gene011662.t1 MTR_8g067280 32.168 143 80 3 190 315 462 604 1.01e-13 72.8
MS.gene011662.t1 MTR_8g027495 30.061 163 103 5 190 348 458 613 3.34e-12 68.2
MS.gene011662.t1 MTR_5g030430 27.684 177 95 5 166 315 465 635 1.29e-11 66.2
MS.gene011662.t1 MTR_8g024790 28.148 135 86 3 190 315 291 423 1.42e-11 65.9
MS.gene011662.t1 MTR_3g498695 27.083 192 120 5 165 339 274 462 4.28e-11 64.3
MS.gene011662.t1 MTR_3g498695 26.042 192 123 4 165 339 274 463 5.93e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011662.t1 AT2G22760 40.314 191 100 5 178 356 107 295 1.22e-37 137
MS.gene011662.t1 AT2G22770 33.473 239 131 3 138 354 85 317 2.08e-36 134
MS.gene011662.t1 AT4G37850 35.341 249 141 6 123 359 88 328 7.40e-35 130
MS.gene011662.t1 AT4G37850 35.341 249 141 6 123 359 88 328 7.40e-35 130
MS.gene011662.t1 AT2G22760 40.588 170 88 4 178 336 107 274 1.44e-32 123
MS.gene011662.t1 AT2G22750 37.949 195 108 4 176 358 111 304 3.60e-29 115
MS.gene011662.t1 AT2G22750 38.462 195 107 5 176 358 139 332 3.75e-29 115
MS.gene011662.t1 AT2G22750 37.949 195 108 4 176 358 135 328 4.45e-29 115
MS.gene011662.t1 AT2G22750 37.949 195 107 5 176 358 111 303 5.00e-28 111
MS.gene011662.t1 AT2G22750 37.949 195 107 5 176 358 139 331 5.52e-28 112
MS.gene011662.t1 AT5G46760 28.090 178 101 5 190 340 415 592 1.17e-14 75.5
MS.gene011662.t1 AT2G46510 37.634 93 53 2 190 279 395 485 1.47e-13 72.4
MS.gene011662.t1 AT1G32640 26.374 273 170 9 70 315 316 584 1.65e-13 72.0
MS.gene011662.t1 AT4G17880 32.576 132 83 1 190 315 416 547 1.71e-13 72.0
MS.gene011662.t1 AT4G09820 31.707 123 70 2 191 313 364 472 2.01e-13 71.6
MS.gene011662.t1 AT1G01260 25.000 152 98 2 169 320 412 547 2.85e-12 68.2
MS.gene011662.t1 AT1G01260 25.000 152 98 2 169 320 412 547 2.85e-12 68.2
MS.gene011662.t1 AT1G01260 25.000 152 98 2 169 320 412 547 2.85e-12 68.2
MS.gene011662.t1 AT5G41315 28.758 153 80 4 190 313 446 598 1.09e-11 66.6
MS.gene011662.t1 AT5G41315 28.758 153 80 4 190 313 449 601 1.22e-11 66.6
MS.gene011662.t1 AT1G63650 29.054 148 81 2 190 313 405 552 1.32e-11 66.2
MS.gene011662.t1 AT1G63650 29.054 148 81 2 190 313 405 552 1.32e-11 66.2
MS.gene011662.t1 AT1G63650 29.054 148 81 2 190 313 405 552 1.32e-11 66.2
MS.gene011662.t1 AT5G41315 28.758 153 80 4 190 313 441 593 1.36e-11 66.2
MS.gene011662.t1 AT3G06120 28.643 199 85 8 190 347 2 184 1.51e-11 63.5
MS.gene011662.t1 AT4G29930 27.907 172 105 5 160 323 25 185 4.58e-11 62.4
MS.gene011662.t1 AT4G16430 30.968 155 90 5 100 246 231 376 5.35e-11 64.3
MS.gene011662.t1 AT4G29930 27.907 172 105 5 160 323 25 185 7.22e-11 62.0
MS.gene011662.t1 AT1G12860 28.966 145 91 4 191 323 268 412 8.89e-11 63.5

Find 57 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTGTCATTGCCCAATT+TGG 0.159846 8.2:+23862213 MS.gene011662:CDS
AAAACGTGTGTTATCCAAAT+TGG 0.202416 8.2:-23862227 None:intergenic
CCAAACCCAACAGATTTATA+CGG 0.283498 8.2:+23862163 MS.gene011662:CDS
CAGCACCTTGTTATCTGATT+TGG 0.287670 8.2:+23861483 MS.gene011662:CDS
CAAGAAGTCCATCATGCTTT+TGG 0.296888 8.2:-23862809 None:intergenic
CGTATAAATCTGTTGGGTTT+GGG 0.304768 8.2:-23862162 None:intergenic
AGTTACTTCTTACCTTCTTT+AGG 0.329290 8.2:-23862414 None:intergenic
ACAATAGTGGTCTGGTTTGT+TGG 0.341236 8.2:-23862703 None:intergenic
CCGTATAAATCTGTTGGGTT+TGG 0.355612 8.2:-23862163 None:intergenic
AATTTGTTGTGAAAAGCTTT+TGG 0.355869 8.2:-23862089 None:intergenic
GGCTAGTGCCATTGCCTTTG+AGG 0.361619 8.2:+23861925 MS.gene011662:CDS
ATGCTGCCATGCGTAGATTC+TGG 0.364951 8.2:-23864567 None:intergenic
AACGCTCTTTAAGCTCTTTG+AGG 0.388426 8.2:-23862620 None:intergenic
CTTCTTACCTTCTTTAGGTC+AGG 0.391987 8.2:-23862409 None:intergenic
TCATGTAAAAGATCACATTA+TGG 0.398549 8.2:+23862327 MS.gene011662:CDS
TTGGTGATGCTACTGCTATC+AGG 0.398588 8.2:+23862739 MS.gene011662:CDS
CACTTTCAGTTTCACAATAG+TGG 0.411282 8.2:-23862716 None:intergenic
AGGGTAGAAGCAAAAGTGTC+AGG 0.446583 8.2:+23862759 MS.gene011662:CDS
CTGTCTGCTGATATGTTCAT+TGG 0.453096 8.2:-23861463 None:intergenic
TCAGTTTCACAATAGTGGTC+TGG 0.454097 8.2:-23862711 None:intergenic
AAACGTGTGTTATCCAAATT+GGG 0.461557 8.2:-23862226 None:intergenic
TCAAACCCGTATAAATCTGT+TGG 0.488589 8.2:-23862169 None:intergenic
CAAACCCGTATAAATCTGTT+GGG 0.491045 8.2:-23862168 None:intergenic
GAGTTCTGCAAGAGCAATGA+AGG 0.495896 8.2:-23862383 None:intergenic
ATCACAATCTAAGAGGTCTT+CGG 0.516297 8.2:+23862303 MS.gene011662:CDS
CAAACCCAACAGATTTATAC+GGG 0.531352 8.2:+23862164 MS.gene011662:CDS
CTAAAACATCACAATCTAAG+AGG 0.533656 8.2:+23862296 MS.gene011662:CDS
AATCTCCAAAGGCTAAAATA+CGG 0.534934 8.2:-23862881 None:intergenic
GGGTTTGGGTTGTCAAAAGA+CGG 0.535552 8.2:-23862148 None:intergenic
ACTCATTCCTGACCTAAAGA+AGG 0.552914 8.2:+23862402 MS.gene011662:CDS
GAATGTTTCGCTTAGAGTGG+TGG 0.560814 8.2:-23861978 None:intergenic
AGTCTCTCTTTGTTCCTCAA+AGG 0.562733 8.2:-23861939 None:intergenic
TGAGATGACTGAAAAGAGGA+TGG 0.564225 8.2:-23862121 None:intergenic
TCTTTGTTCCTCAAAGGCAA+TGG 0.566921 8.2:-23861933 None:intergenic
TGGTGATGCTACTGCTATCA+GGG 0.568737 8.2:+23862740 MS.gene011662:CDS
ATTGAATGTTTCGCTTAGAG+TGG 0.570806 8.2:-23861981 None:intergenic
ATCCACTGCCAAAAGCATGA+TGG 0.574310 8.2:+23862801 MS.gene011662:CDS
AATCTGAGATGACTGAAAAG+AGG 0.576642 8.2:-23862125 None:intergenic
ACTCTAAGCGAAACATTCAA+TGG 0.582474 8.2:+23861983 MS.gene011662:CDS
CAGCAATGATTGTAATGTCG+TGG 0.584079 8.2:-23862908 None:intergenic
GGGTAGAAGCAAAAGTGTCA+GGG 0.600504 8.2:+23862760 MS.gene011662:CDS
ATTGGGCAATGACACTGAAG+TGG 0.602756 8.2:-23862209 None:intergenic
AGAGTTTCTCTCACGTGACA+TGG 0.613188 8.2:+23861904 MS.gene011662:CDS
TGAATACATGTTATTTGACA+AGG 0.622791 8.2:+23861844 MS.gene011662:CDS
TCTCACCAAATCAGATAACA+AGG 0.622982 8.2:-23861488 None:intergenic
AATCATCGTGCAGGAAAAGG+TGG 0.627645 8.2:+23861820 MS.gene011662:intron
TTGGGCAATGACACTGAAGT+GGG 0.628306 8.2:-23862208 None:intergenic
ATATGTTAATTAGAAGGACA+AGG 0.637697 8.2:+23862569 MS.gene011662:intron
CTGAAAAGAGGATGGAGATG+CGG 0.641434 8.2:-23862113 None:intergenic
CACAAAGGAAGATCAATCGA+TGG 0.644880 8.2:+23862674 MS.gene011662:CDS
GAACTTGCTTGATGCTGACG+TGG 0.647274 8.2:+23861877 MS.gene011662:CDS
CGACATTACAATCATTGCTG+AGG 0.658041 8.2:+23862911 MS.gene011662:CDS
GTCGTGGAAAGAATCTCCAA+AGG 0.662563 8.2:-23862892 None:intergenic
TATTGTGAAACTGAAAGTGT+TGG 0.666038 8.2:+23862720 MS.gene011662:CDS
AGAAAACGAAGAGAGAAACT+CGG 0.671233 8.2:+23862355 MS.gene011662:CDS
ACTCGTCCAGAATCTACGCA+TGG 0.674291 8.2:+23864561 MS.gene011662:CDS
AAAGGAAGATCAATCGATGG+TGG 0.686344 8.2:+23862677 MS.gene011662:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAAGAAAATTAAAG+TGG - chr8.2:23862513-23862532 None:intergenic 10.0%
!! ACATCAAAATATTTAATGAT+TGG - chr8.2:23863303-23863322 None:intergenic 15.0%
!! TCTTAATAAATAAATCACTA+TGG + chr8.2:23864227-23864246 MS.gene011662:intron 15.0%
!! TGTAAAATATGTTAATTAGA+AGG + chr8.2:23862563-23862582 MS.gene011662:intron 15.0%
!! TTATTAGATGAAATTCATAT+AGG - chr8.2:23864155-23864174 None:intergenic 15.0%
!!! CACTCATTTTATAAAAAATT+AGG + chr8.2:23864090-23864109 MS.gene011662:intron 15.0%
!!! CTTCTTTTTTATCTTTTTAT+TGG + chr8.2:23863188-23863207 MS.gene011662:intron 15.0%
!!! GTCTAGAAATTTTTATATAT+GGG - chr8.2:23864254-23864273 None:intergenic 15.0%
!!! TCTAGAAATTTTTATATATG+GGG - chr8.2:23864253-23864272 None:intergenic 15.0%
!! AATAAGAAGTGAGAAAAATA+AGG + chr8.2:23863547-23863566 MS.gene011662:intron 20.0%
!! ACAAAATAAACTCTATGATT+TGG - chr8.2:23863063-23863082 None:intergenic 20.0%
!! ATTATTCTCTTTGTCAAAAA+AGG + chr8.2:23863674-23863693 MS.gene011662:intron 20.0%
!! TAAAAAGTAATCAAGCTTAT+GGG - chr8.2:23863279-23863298 None:intergenic 20.0%
!! TAACAATCAATACAAATAAG+TGG - chr8.2:23864489-23864508 None:intergenic 20.0%
!! TAGAATCTATTCCTAAAATA+TGG - chr8.2:23864117-23864136 None:intergenic 20.0%
!! TATCATGAACTTAAATTGTA+GGG + chr8.2:23863780-23863799 MS.gene011662:intron 20.0%
!! TTAAAAAGTAATCAAGCTTA+TGG - chr8.2:23863280-23863299 None:intergenic 20.0%
!! TTAAAGTGGTCAAATTTAAT+TGG - chr8.2:23862499-23862518 None:intergenic 20.0%
!! TTATTCTCTTTGTCAAAAAA+GGG + chr8.2:23863675-23863694 MS.gene011662:intron 20.0%
!!! AAAAATTAGGTCCATATTTT+AGG + chr8.2:23864103-23864122 MS.gene011662:intron 20.0%
!!! AACTAGCTAAACTTTATTTA+CGG - chr8.2:23861600-23861619 None:intergenic 20.0%
!!! CAATTTTAGAAGAAGAAAAA+GGG + chr8.2:23862646-23862665 MS.gene011662:CDS 20.0%
!!! CATTCTCTTTAAAAAAACAA+TGG - chr8.2:23863977-23863996 None:intergenic 20.0%
!!! CTTAAATAATGAAAACGTTT+TGG - chr8.2:23863642-23863661 None:intergenic 20.0%
!!! GGTCTAGAAATTTTTATATA+TGG - chr8.2:23864255-23864274 None:intergenic 20.0%
!!! TCAATTTTAGAAGAAGAAAA+AGG + chr8.2:23862645-23862664 MS.gene011662:CDS 20.0%
!!! TCTATTATTGTTTTACAGAT+TGG + chr8.2:23864511-23864530 MS.gene011662:intron 20.0%
!!! TGAACTTTTCATAGTTTATA+TGG + chr8.2:23863851-23863870 MS.gene011662:intron 20.0%
!!! TTATTTTTCTCACTTCTTAT+TGG - chr8.2:23863548-23863567 None:intergenic 20.0%
!!! TTTTTTGACAAAGAGAATAA+TGG - chr8.2:23863675-23863694 None:intergenic 20.0%
! AAATATAAATGAGAGAACAG+TGG - chr8.2:23864048-23864067 None:intergenic 25.0%
! AAGATGATGTAGAGAATAAA+TGG - chr8.2:23862986-23863005 None:intergenic 25.0%
! ATATGTTAATTAGAAGGACA+AGG + chr8.2:23862569-23862588 MS.gene011662:intron 25.0%
! ATCAAAAAAATTCAGCTTCT+TGG - chr8.2:23862053-23862072 None:intergenic 25.0%
! ATGTTTAAGCGATAAAATGA+TGG - chr8.2:23864003-23864022 None:intergenic 25.0%
! GTATCATGAACTTAAATTGT+AGG + chr8.2:23863779-23863798 MS.gene011662:intron 25.0%
! TCAACAAAGTTGTCATTAAA+TGG + chr8.2:23863573-23863592 MS.gene011662:intron 25.0%
! TCATGTAAAAGATCACATTA+TGG + chr8.2:23862327-23862346 MS.gene011662:CDS 25.0%
! TGAATGAGAAAGTTGTTTAA+TGG + chr8.2:23864439-23864458 MS.gene011662:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr8.2:23863535-23863554 None:intergenic 25.0%
!! TGAATACATGTTATTTGACA+AGG + chr8.2:23861844-23861863 MS.gene011662:CDS 25.0%
!!! AACCACTTTTTGACAATTTT+TGG + chr8.2:23863450-23863469 MS.gene011662:intron 25.0%
!!! AATTTGTTGTGAAAAGCTTT+TGG - chr8.2:23862092-23862111 None:intergenic 25.0%
!!! ATTTTTTGAAGACTCAATTG+AGG - chr8.2:23862263-23862282 None:intergenic 25.0%
!!! TTTTCATAAGTTGAGATTGT+GGG - chr8.2:23863396-23863415 None:intergenic 25.0%
!!! TTTTTTGAAGACTCAATTGA+GGG - chr8.2:23862262-23862281 None:intergenic 25.0%
AAAAAATTCAGCTTCTTGGT+TGG - chr8.2:23862049-23862068 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr8.2:23863522-23863541 None:intergenic 30.0%
AAAACGTGTGTTATCCAAAT+TGG - chr8.2:23862230-23862249 None:intergenic 30.0%
AAACGTGTGTTATCCAAATT+GGG - chr8.2:23862229-23862248 None:intergenic 30.0%
AATCTCCAAAGGCTAAAATA+CGG - chr8.2:23862884-23862903 None:intergenic 30.0%
AGGGCTTAATACAAGTAAAA+AGG + chr8.2:23863799-23863818 MS.gene011662:intron 30.0%
AGTTACTTCTTACCTTCTTT+AGG - chr8.2:23862417-23862436 None:intergenic 30.0%
ATGGTTGTATAATTTCTCTC+TGG + chr8.2:23864458-23864477 MS.gene011662:intron 30.0%
CAAAAAAAAACATGAGAGAC+AGG - chr8.2:23861525-23861544 None:intergenic 30.0%
CTAAAACATCACAATCTAAG+AGG + chr8.2:23862296-23862315 MS.gene011662:CDS 30.0%
GGGCTTAATACAAGTAAAAA+GGG + chr8.2:23863800-23863819 MS.gene011662:intron 30.0%
GTCCAAAAATTGTCAAAAAG+TGG - chr8.2:23863455-23863474 None:intergenic 30.0%
GTCTTCAAAAAATCAGAACT+TGG + chr8.2:23862270-23862289 MS.gene011662:CDS 30.0%
GTTTCAGTCAAATTTGAACT+CGG + chr8.2:23861620-23861639 MS.gene011662:intron 30.0%
TAATTCTTTAATCATCGTGC+AGG + chr8.2:23861811-23861830 MS.gene011662:intron 30.0%
TTGATATTGCGTTTGCAAAA+CGG - chr8.2:23861730-23861749 None:intergenic 30.0%
! AAAGCTTGCAGTTTGTATTT+TGG - chr8.2:23863744-23863763 None:intergenic 30.0%
! AAGCTTGCAGTTTGTATTTT+GGG - chr8.2:23863743-23863762 None:intergenic 30.0%
! TATTGTGAAACTGAAAGTGT+TGG + chr8.2:23862720-23862739 MS.gene011662:CDS 30.0%
! TTTCATAAGTTGAGATTGTG+GGG - chr8.2:23863395-23863414 None:intergenic 30.0%
!! ATTGTTTTACAGATTGGTGA+AGG + chr8.2:23864517-23864536 MS.gene011662:intron 30.0%
!! ATTTTGATGTTTTGCTCTAG+AGG + chr8.2:23863313-23863332 MS.gene011662:intron 30.0%
!! GTTTTCATAAGTTGAGATTG+TGG - chr8.2:23863397-23863416 None:intergenic 30.0%
!!! AATAACCGTATTTTAGCCTT+TGG + chr8.2:23862876-23862895 MS.gene011662:CDS 30.0%
!!! ATAACTTTTCGCTTTTTGTG+TGG + chr8.2:23864201-23864220 MS.gene011662:intron 30.0%
!!! CGTTTGTTTTTACAAAAGTG+CGG - chr8.2:23864396-23864415 None:intergenic 30.0%
ACTCTAAGCGAAACATTCAA+TGG + chr8.2:23861983-23862002 MS.gene011662:CDS 35.0%
AGAAAAAGGGAAGAACACAA+AGG + chr8.2:23862659-23862678 MS.gene011662:CDS 35.0%
AGAAAACGAAGAGAGAAACT+CGG + chr8.2:23862355-23862374 MS.gene011662:CDS 35.0%
AGTTCATTAACCACTTCAGT+TGG + chr8.2:23861772-23861791 MS.gene011662:intron 35.0%
ATATCACGTCTAACATGCAT+TGG - chr8.2:23864328-23864347 None:intergenic 35.0%
ATCACAATCTAAGAGGTCTT+CGG + chr8.2:23862303-23862322 MS.gene011662:CDS 35.0%
ATGCATTGGGTAGTGAAATT+TGG - chr8.2:23864314-23864333 None:intergenic 35.0%
ATTGAATGTTTCGCTTAGAG+TGG - chr8.2:23861984-23862003 None:intergenic 35.0%
CAAACCCAACAGATTTATAC+GGG + chr8.2:23862164-23862183 MS.gene011662:CDS 35.0%
CAAACCCGTATAAATCTGTT+GGG - chr8.2:23862171-23862190 None:intergenic 35.0%
CACTTTCAGTTTCACAATAG+TGG - chr8.2:23862719-23862738 None:intergenic 35.0%
CCAAACCCAACAGATTTATA+CGG + chr8.2:23862163-23862182 MS.gene011662:CDS 35.0%
CGTATAAATCTGTTGGGTTT+GGG - chr8.2:23862165-23862184 None:intergenic 35.0%
CTCTTGTCTTAGAAAGAGAT+CGG + chr8.2:23861553-23861572 MS.gene011662:intron 35.0%
GACTAGTAAGACATAGTCAT+AGG - chr8.2:23862540-23862559 None:intergenic 35.0%
GGCAACACAATATTTGAAAG+GGG - chr8.2:23863373-23863392 None:intergenic 35.0%
GGGCAACACAATATTTGAAA+GGG - chr8.2:23863374-23863393 None:intergenic 35.0%
TACAATCATTGCTGAGGTAA+AGG + chr8.2:23862917-23862936 MS.gene011662:intron 35.0%
TATCACGTCTAACATGCATT+GGG - chr8.2:23864327-23864346 None:intergenic 35.0%
TCAAACCCGTATAAATCTGT+TGG - chr8.2:23862172-23862191 None:intergenic 35.0%
TCCAAACATGTCATTAGTGA+CGG - chr8.2:23864277-23864296 None:intergenic 35.0%
TCTCACCAAATCAGATAACA+AGG - chr8.2:23861491-23861510 None:intergenic 35.0%
TCTTGTCTTAGAAAGAGATC+GGG + chr8.2:23861554-23861573 MS.gene011662:intron 35.0%
TGACAAAGAGAATAATGGCA+TGG - chr8.2:23863670-23863689 None:intergenic 35.0%
TTTAATCATCGTGCAGGAAA+AGG + chr8.2:23861817-23861836 MS.gene011662:intron 35.0%
! AAGCTAGTATTTAAAGCTCC+TGG - chr8.2:23861679-23861698 None:intergenic 35.0%
! AATCTGAGATGACTGAAAAG+AGG - chr8.2:23862128-23862147 None:intergenic 35.0%
! AGAGAGAGAAGTATGAACAT+GGG + chr8.2:23863222-23863241 MS.gene011662:intron 35.0%
! ATTCTGGACGAGTTCTTTTA+AGG - chr8.2:23864554-23864573 None:intergenic 35.0%
! CAGGGAAAAAGATGTTGATT+AGG + chr8.2:23862778-23862797 MS.gene011662:CDS 35.0%
! TAGAGAGAGAAGTATGAACA+TGG + chr8.2:23863221-23863240 MS.gene011662:intron 35.0%
! TTCATAAGTTGAGATTGTGG+GGG - chr8.2:23863394-23863413 None:intergenic 35.0%
!! GATCTCTTTCTAAGACAAGA+GGG - chr8.2:23861554-23861573 None:intergenic 35.0%
AAAGGAAGATCAATCGATGG+TGG + chr8.2:23862677-23862696 MS.gene011662:CDS 40.0%
AACGCTCTTTAAGCTCTTTG+AGG - chr8.2:23862623-23862642 None:intergenic 40.0%
AATCTGCTATAGTGACTGTG+AGG - chr8.2:23863346-23863365 None:intergenic 40.0%
ACGGAGTTTGATGGAAATCA+CGG - chr8.2:23861711-23861730 None:intergenic 40.0%
ACTCATTCCTGACCTAAAGA+AGG + chr8.2:23862402-23862421 MS.gene011662:CDS 40.0%
AGTCTCTCTTTGTTCCTCAA+AGG - chr8.2:23861942-23861961 None:intergenic 40.0%
ATCTGCTATAGTGACTGTGA+GGG - chr8.2:23863345-23863364 None:intergenic 40.0%
CACAAAGGAAGATCAATCGA+TGG + chr8.2:23862674-23862693 MS.gene011662:CDS 40.0%
CAGCAATGATTGTAATGTCG+TGG - chr8.2:23862911-23862930 None:intergenic 40.0%
CATTTGTGAACCAACTGAAG+TGG - chr8.2:23861785-23861804 None:intergenic 40.0%
CCAAACATGTCATTAGTGAC+GGG - chr8.2:23864276-23864295 None:intergenic 40.0%
CCGTATAAATCTGTTGGGTT+TGG - chr8.2:23862166-23862185 None:intergenic 40.0%
CGACATTACAATCATTGCTG+AGG + chr8.2:23862911-23862930 MS.gene011662:CDS 40.0%
CTGTCTGCTGATATGTTCAT+TGG - chr8.2:23861466-23861485 None:intergenic 40.0%
CTTCTTACCTTCTTTAGGTC+AGG - chr8.2:23862412-23862431 None:intergenic 40.0%
GGAAATCACAACAAAACGCA+CGG - chr8.2:23861658-23861677 None:intergenic 40.0%
GGGGCAACACAATATTTGAA+AGG - chr8.2:23863375-23863394 None:intergenic 40.0%
GTTTGCAAAACGGAGTTTGA+TGG - chr8.2:23861720-23861739 None:intergenic 40.0%
TCAGTTTCACAATAGTGGTC+TGG - chr8.2:23862714-23862733 None:intergenic 40.0%
TCTTTGTTCCTCAAAGGCAA+TGG - chr8.2:23861936-23861955 None:intergenic 40.0%
TGAGATGACTGAAAAGAGGA+TGG - chr8.2:23862124-23862143 None:intergenic 40.0%
! ACAATAGTGGTCTGGTTTGT+TGG - chr8.2:23862706-23862725 None:intergenic 40.0%
! ATGTAGCTTTTGCTTTGCCA+TGG + chr8.2:23864363-23864382 MS.gene011662:intron 40.0%
! CAAGAAGTCCATCATGCTTT+TGG - chr8.2:23862812-23862831 None:intergenic 40.0%
! CAGCACCTTGTTATCTGATT+TGG + chr8.2:23861483-23861502 MS.gene011662:CDS 40.0%
! CGGGTAATTTGTAGTTCAGT+CGG + chr8.2:23861573-23861592 MS.gene011662:intron 40.0%
! TGTAGCTTTTGCTTTGCCAT+GGG + chr8.2:23864364-23864383 MS.gene011662:intron 40.0%
! TTCAGTGTCATTGCCCAATT+TGG + chr8.2:23862213-23862232 MS.gene011662:CDS 40.0%
!! ATTTTGGGTGTGGTAGTATG+TGG - chr8.2:23863728-23863747 None:intergenic 40.0%
!! CGATCTCTTTCTAAGACAAG+AGG - chr8.2:23861555-23861574 None:intergenic 40.0%
!! TGCAGTTTGTATTTTGGGTG+TGG - chr8.2:23863738-23863757 None:intergenic 40.0%
!! TGCGTTTTGTTGTGATTTCC+AGG + chr8.2:23861658-23861677 MS.gene011662:intron 40.0%
AAGCTATAACCATGCCAGCT+CGG + chr8.2:23863613-23863632 MS.gene011662:intron 45.0%
AATCATCGTGCAGGAAAAGG+TGG + chr8.2:23861820-23861839 MS.gene011662:intron 45.0%
ACAACAAAACGCACGGATAC+AGG - chr8.2:23861651-23861670 None:intergenic 45.0%
AGAGTTTCTCTCACGTGACA+TGG + chr8.2:23861904-23861923 MS.gene011662:CDS 45.0%
ATTGGGCAATGACACTGAAG+TGG - chr8.2:23862212-23862231 None:intergenic 45.0%
CCCGTCACTAATGACATGTT+TGG + chr8.2:23864273-23864292 MS.gene011662:intron 45.0%
CTGAAAAGAGGATGGAGATG+CGG - chr8.2:23862116-23862135 None:intergenic 45.0%
GAATGTTTCGCTTAGAGTGG+TGG - chr8.2:23861981-23862000 None:intergenic 45.0%
GAGTTCTGCAAGAGCAATGA+AGG - chr8.2:23862386-23862405 None:intergenic 45.0%
GTCGTGGAAAGAATCTCCAA+AGG - chr8.2:23862895-23862914 None:intergenic 45.0%
TCTGCTATAGTGACTGTGAG+GGG - chr8.2:23863344-23863363 None:intergenic 45.0%
TGACATGTTTGGATCAGCGT+TGG + chr8.2:23864284-23864303 MS.gene011662:intron 45.0%
TTGGGCAATGACACTGAAGT+GGG - chr8.2:23862211-23862230 None:intergenic 45.0%
! AAAAGTGCGGTGAATTCCCA+TGG - chr8.2:23864383-23864402 None:intergenic 45.0%
! ATCCACTGCCAAAAGCATGA+TGG + chr8.2:23862801-23862820 MS.gene011662:CDS 45.0%
! GAGAGAAGTATGAACATGGG+CGG + chr8.2:23863225-23863244 MS.gene011662:intron 45.0%
! TGGTGATGCTACTGCTATCA+GGG + chr8.2:23862740-23862759 MS.gene011662:CDS 45.0%
!! AGGGTAGAAGCAAAAGTGTC+AGG + chr8.2:23862759-23862778 MS.gene011662:CDS 45.0%
!! GGGTAGAAGCAAAAGTGTCA+GGG + chr8.2:23862760-23862779 MS.gene011662:CDS 45.0%
!! GGGTTTGGGTTGTCAAAAGA+CGG - chr8.2:23862151-23862170 None:intergenic 45.0%
!! TTGGTGATGCTACTGCTATC+AGG + chr8.2:23862739-23862758 MS.gene011662:CDS 45.0%
!!! AAACGTTTTGGTTACCGAGC+TGG - chr8.2:23863630-23863649 None:intergenic 45.0%
ACAAAACGCACGGATACAGG+AGG - chr8.2:23861648-23861667 None:intergenic 50.0%
ACTCGTCCAGAATCTACGCA+TGG + chr8.2:23864561-23864580 MS.gene011662:CDS 50.0%
ATGCTGCCATGCGTAGATTC+TGG - chr8.2:23864570-23864589 None:intergenic 50.0%
TATGAACATGGGCGGATCCA+CGG + chr8.2:23863233-23863252 MS.gene011662:intron 50.0%
! GAACTTGCTTGATGCTGACG+TGG + chr8.2:23861877-23861896 MS.gene011662:CDS 50.0%
! GTCCATCATGCTTTTGGCAG+TGG - chr8.2:23862806-23862825 None:intergenic 50.0%
!! TTTTGGTTACCGAGCTGGCA+TGG - chr8.2:23863625-23863644 None:intergenic 50.0%
ATGAACATGGGCGGATCCAC+GGG + chr8.2:23863234-23863253 MS.gene011662:intron 55.0%
CGGATCCACGGGTTCAATTG+GGG + chr8.2:23863245-23863264 MS.gene011662:intron 55.0%
GCGGATCCACGGGTTCAATT+GGG + chr8.2:23863244-23863263 MS.gene011662:intron 55.0%
! GGCTAGTGCCATTGCCTTTG+AGG + chr8.2:23861925-23861944 MS.gene011662:CDS 55.0%
GCTGTCCCCAATTGAACCCG+TGG - chr8.2:23863253-23863272 None:intergenic 60.0%
GGCGGATCCACGGGTTCAAT+TGG + chr8.2:23863243-23863262 MS.gene011662:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 23861442 23864609 23861442 ID=MS.gene011662
chr8.2 mRNA 23861442 23864609 23861442 ID=MS.gene011662.t1;Parent=MS.gene011662
chr8.2 exon 23861442 23861504 23861442 ID=MS.gene011662.t1.exon1;Parent=MS.gene011662.t1
chr8.2 CDS 23861442 23861504 23861442 ID=cds.MS.gene011662.t1;Parent=MS.gene011662.t1
chr8.2 exon 23861833 23862423 23861833 ID=MS.gene011662.t1.exon2;Parent=MS.gene011662.t1
chr8.2 CDS 23861833 23862423 23861833 ID=cds.MS.gene011662.t1;Parent=MS.gene011662.t1
chr8.2 exon 23862582 23862932 23862582 ID=MS.gene011662.t1.exon3;Parent=MS.gene011662.t1
chr8.2 CDS 23862582 23862932 23862582 ID=cds.MS.gene011662.t1;Parent=MS.gene011662.t1
chr8.2 exon 23864529 23864609 23864529 ID=MS.gene011662.t1.exon4;Parent=MS.gene011662.t1
chr8.2 CDS 23864529 23864609 23864529 ID=cds.MS.gene011662.t1;Parent=MS.gene011662.t1
Gene Sequence

>MS.gene011662

ATGGAGCAAATCAGCAACACGCCAATGAACATATCAGCAGACAGCACCTTGTTATCTGATTTGGTGAGAAATTCATGCTTCCTGTCTCTCATGTTTTTTTTTGTCTTTACCCTCTTGTCTTAGAAAGAGATCGGGTAATTTGTAGTTCAGTCGGACCGTAAATAAAGTTTAGCTAGTTGTTTCAGTCAAATTTGAACTCGGATCCTCCTGTATCCGTGCGTTTTGTTGTGATTTCCAGGAGCTTTAAATACTAGCTTGACTCTTTACCGTGATTTCCATCAAACTCCGTTTTGCAAACGCAATATCAAACATGCACTTTGTCTTTATAAGAGTTCATTAACCACTTCAGTTGGTTCACAAATGATTTAATAATTCTTTAATCATCGTGCAGGAAAAGGTGGATGAATACATGTTATTTGACAAGGAATGCTACTTGAACTTGCTTGATGCTGACGTGGTAGAAGAGTTTCTCTCACGTGACATGGCTAGTGCCATTGCCTTTGAGGAACAAAGAGAGACTCTACAACAATGCATTTCCACCACTCTAAGCGAAACATTCAATGGTGAAACAAGTTTTGAGTCTTTTGACTTTGATTTTGAGAATCCAACCAAGAAGCTGAATTTTTTTGATCAAAGTAACAACATAACCAAAAGCTTTTCACAACAAATTTCCGCATCTCCATCCTCTTTTCAGTCATCTCAGATTCCGTCTTTTGACAACCCAAACCCAACAGATTTATACGGGTTTGATCAAAAACAGAAAGAACCCACTTCAGTGTCATTGCCCAATTTGGATAACACACGTTTTTCAGCACAACCCTCAATTGAGTCTTCAAAAAATCAGAACTTGGAAACTAAAACATCACAATCTAAGAGGTCTTCGGCTCATGTAAAAGATCACATTATGGTTGAGAGAAAACGAAGAGAGAAACTCGGTCAAGCCTTCATTGCTCTTGCAGAACTCATTCCTGACCTAAAGAAGGTAAGAAGTAACTGTTAGATAAATGTAGATCTAGTTTCAAAAGAAGTGACATTGTTGATTGTTGCAGACATGCCAATTAAATTTGACCACTTTAATTTTCTTAAATTATATAACCTATGACTATGTCTTACTAGTCACGTGTAAAATATGTTAATTAGAAGGACAAGGCTTCAGTATTAGCAGATACAATCAAATACCTCAAAGAGCTTAAAGAGCGTTTGTCAATTTTAGAAGAAGAAAAAGGGAAGAACACAAAGGAAGATCAATCGATGGTGGTTTCCAACAAACCAGACCACTATTGTGAAACTGAAAGTGTTGGTGATGCTACTGCTATCAGGGTAGAAGCAAAAGTGTCAGGGAAAAAGATGTTGATTAGGATCCACTGCCAAAAGCATGATGGACTTCTTGTTAAAGTCATCACTGTGATTCAAAGTTTTCAACTATTAGTTGTCAATAACCGTATTTTAGCCTTTGGAGATTCTTTCCACGACATTACAATCATTGCTGAGGTAAAGGACATTCTCTTTCAATAAAAGACTCAGATTTTTTTTCTTTCTTTCCATTTATTCTCTACATCATCTTTTTTTAAAAAATATTAATACTCTTTTTATATATCATTTTTTACTAATAAAATATCCAAATCATAGAGTTTATTTTGTTGTGTATTTTTGACTTTGTTTATTTTGTTGTGTATTTTTCACTTTTGTTGCTGAGTAGTGATATTTATAGAACTACTTGATAACATCGACAACTGTTGTGACAATCTTCTTTTTTATCTTTTTATTGGTAAAAAATAATAGAGAGAGAAGTATGAACATGGGCGGATCCACGGGTTCAATTGGGGACAGCTGACCCATAAGCTTGATTACTTTTTAACCAATCATTAAATATTTTGATGTTTTGCTCTAGAGGACTCTCCCCTCACAGTCACTATAGCAGATTTTCTCCCCTTTCAAATATTGTGTTGCCCCCACAATCTCAACTTATGAAAACATACGATTGAAAAAAGAGAAATGATATTTTGACAACCACTTTTTGACAATTTTTGGACAACTTTCTCTCTCATACTCACATAATGTTGTTATTCTCTCTCTTCCTTTTTCTCTCTCCATTGTTTTTGACCAATAAGAAGTGAGAAAAATAAGGTTGTCAACAAAGTTGTCATTAAATGGATGTCAAAATATCATTAAAGCTATAACCATGCCAGCTCGGTAACCAAAACGTTTTCATTATTTAAGAGAAGCCATGCCATTATTCTCTTTGTCAAAAAAGGGATGCTAATAAATAAATAAAATACTTCTCCACATACTACCACACCCAAAATACAAACTGCAAGCTTTTTACTCGTATTTTTTGTATCATGAACTTAAATTGTAGGGCTTAATACAAGTAAAAAGGGTTTTCATAGTAATAAATTTTGTGAAATATGAACTTTTCATAGTTTATATGGAGATATTTTTGAATGATTGTCTAGAGTAGTAATATTTGATAGTGTTGAAAGAGTTATCTAATTTTTTTTTTTTATATGTAATGCTATAATTTTTTTATCTCCATTGTTTTTTTAAAGAGAATGATACCATCATTTTATCGCTTAAACATTTATATAATTTTTGTATGAAAACCACTGTTCTCTCATTTATATTTGAGAATCTATTTCTCAAATATTCACTCATTTTATAAAAAATTAGGTCCATATTTTAGGAATAGATTCTACGTAAAGTCGTGAAACCTATATGAATTTCATCTAATAAAAGAGTGAATATTTGAGAGAATGTTCATAACTTTTCGCTTTTTGTGTGGATTTCTTAATAAATAAATCACTATGGCCCCATATATAAAAATTTCTAGACCCGTCACTAATGACATGTTTGGATCAGCGTTGGCATGCCAAATTTCACTACCCAATGCATGTTAGACGTGATATTTATGAAGCTACAATATGTAGCTTTTGCTTTGCCATGGGAATTCACCGCACTTTTGTAAAAACAAACGTGTATCTAAACACTATCTAAGTATGAATGAGAAAGTTGTTTAATGGTTGTATAATTTCTCTCTGGCGTCACCACTTATTTGTATTGATTGTTAATTCTATTATTGTTTTACAGATTGGTGAAGGCTACAACTTGACCTTAAAAGAACTCGTCCAGAATCTACGCATGGCAGCATTGAAGTTTATGTCATCGTAA
Protein sequence

>MS.gene011662.t1

MEQISNTPMNISADSTLLSDLEKVDEYMLFDKECYLNLLDADVVEEFLSRDMASAIAFEEQRETLQQCISTTLSETFNGETSFESFDFDFENPTKKLNFFDQSNNITKSFSQQISASPSSFQSSQIPSFDNPNPTDLYGFDQKQKEPTSVSLPNLDNTRFSAQPSIESSKNQNLETKTSQSKRSSAHVKDHIMVERKRREKLGQAFIALAELIPDLKKKDKASVLADTIKYLKELKERLSILEEEKGKNTKEDQSMVVSNKPDHYCETESVGDATAIRVEAKVSGKKMLIRIHCQKHDGLLVKVITVIQSFQLLVVNNRILAFGDSFHDITIIAEIGEGYNLTLKELVQNLRMAALKFMSS