Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011665.t1 | XP_013442259.1 | 87.7 | 253 | 18 | 1 | 1 | 240 | 1 | 253 | 4.00E-108 | 401 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011665.t1 | Q9T072 | 32.2 | 233 | 131 | 8 | 15 | 245 | 5 | 212 | 2.5e-13 | 77.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011665.t1 | A0A072TRV6 | 87.7 | 253 | 18 | 1 | 1 | 240 | 1 | 253 | 2.9e-108 | 401.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene011665.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011665.t1 | MTR_0246s0020 | 86.434 | 258 | 22 | 1 | 1 | 245 | 1 | 258 | 4.49e-144 | 408 |
MS.gene011665.t1 | MTR_0246s0020 | 86.434 | 258 | 22 | 1 | 1 | 245 | 1 | 258 | 6.76e-144 | 407 |
MS.gene011665.t1 | MTR_6g047550 | 52.985 | 268 | 68 | 7 | 1 | 245 | 1 | 233 | 5.09e-75 | 229 |
MS.gene011665.t1 | MTR_6g047570 | 53.150 | 254 | 75 | 6 | 1 | 245 | 1 | 219 | 2.28e-68 | 214 |
MS.gene011665.t1 | MTR_0011s0210 | 50.373 | 268 | 85 | 8 | 1 | 245 | 1 | 243 | 3.62e-62 | 199 |
MS.gene011665.t1 | MTR_0011s0260 | 50.373 | 268 | 85 | 8 | 1 | 245 | 1 | 243 | 8.44e-62 | 198 |
MS.gene011665.t1 | MTR_4g066460 | 48.963 | 241 | 91 | 5 | 1 | 240 | 1 | 210 | 1.58e-54 | 178 |
MS.gene011665.t1 | MTR_4g066380 | 46.473 | 241 | 95 | 6 | 1 | 240 | 1 | 208 | 2.31e-54 | 178 |
MS.gene011665.t1 | MTR_4g067010 | 45.783 | 249 | 89 | 7 | 1 | 245 | 1 | 207 | 2.00e-53 | 175 |
MS.gene011665.t1 | MTR_4g098035 | 44.361 | 266 | 81 | 10 | 1 | 239 | 1 | 226 | 7.37e-50 | 166 |
MS.gene011665.t1 | MTR_0246s0050 | 41.975 | 243 | 76 | 8 | 23 | 239 | 2 | 205 | 1.24e-40 | 142 |
MS.gene011665.t1 | MTR_0250s0040 | 42.152 | 223 | 53 | 6 | 24 | 245 | 1 | 148 | 1.16e-33 | 122 |
MS.gene011665.t1 | MTR_5g014520 | 49.630 | 135 | 47 | 4 | 108 | 242 | 101 | 214 | 5.06e-27 | 106 |
MS.gene011665.t1 | MTR_5g014640 | 37.019 | 208 | 84 | 9 | 55 | 240 | 27 | 209 | 5.28e-25 | 101 |
MS.gene011665.t1 | MTR_5g014600 | 32.780 | 241 | 113 | 8 | 13 | 243 | 6 | 207 | 2.62e-23 | 96.7 |
MS.gene011665.t1 | MTR_5g014560 | 52.137 | 117 | 36 | 5 | 134 | 242 | 84 | 188 | 5.23e-23 | 95.5 |
MS.gene011665.t1 | MTR_2g104490 | 41.216 | 148 | 67 | 3 | 95 | 242 | 67 | 194 | 4.89e-22 | 92.4 |
MS.gene011665.t1 | MTR_2g104490 | 41.216 | 148 | 67 | 3 | 95 | 242 | 67 | 194 | 6.28e-22 | 92.4 |
MS.gene011665.t1 | MTR_2g010450 | 65.079 | 63 | 22 | 0 | 183 | 245 | 175 | 237 | 9.18e-22 | 92.8 |
MS.gene011665.t1 | MTR_4g097950 | 70.690 | 58 | 17 | 0 | 185 | 242 | 70 | 127 | 1.08e-21 | 90.9 |
MS.gene011665.t1 | MTR_2g104550 | 40.940 | 149 | 68 | 3 | 95 | 243 | 68 | 196 | 1.79e-20 | 88.6 |
MS.gene011665.t1 | MTR_4g009110 | 39.726 | 146 | 55 | 3 | 103 | 242 | 113 | 231 | 3.48e-20 | 88.2 |
MS.gene011665.t1 | MTR_4g092700 | 56.944 | 72 | 31 | 0 | 169 | 240 | 142 | 213 | 6.57e-20 | 87.4 |
MS.gene011665.t1 | MTR_8g009020 | 38.406 | 138 | 61 | 3 | 109 | 245 | 89 | 203 | 3.12e-19 | 85.5 |
MS.gene011665.t1 | MTR_4g097940 | 54.286 | 70 | 32 | 0 | 172 | 241 | 142 | 211 | 3.70e-19 | 85.1 |
MS.gene011665.t1 | MTR_4g009540 | 58.462 | 65 | 27 | 0 | 178 | 242 | 145 | 209 | 1.73e-18 | 83.2 |
MS.gene011665.t1 | MTR_4g097920 | 52.857 | 70 | 33 | 0 | 172 | 241 | 127 | 196 | 1.92e-18 | 83.2 |
MS.gene011665.t1 | MTR_4g097920 | 52.857 | 70 | 33 | 0 | 172 | 241 | 142 | 211 | 2.04e-18 | 83.2 |
MS.gene011665.t1 | MTR_4g009540 | 58.462 | 65 | 27 | 0 | 178 | 242 | 145 | 209 | 2.32e-18 | 83.2 |
MS.gene011665.t1 | MTR_2g104560 | 55.556 | 63 | 28 | 0 | 178 | 240 | 47 | 109 | 4.06e-18 | 80.9 |
MS.gene011665.t1 | MTR_7g080780 | 29.268 | 205 | 114 | 4 | 61 | 242 | 26 | 222 | 4.77e-18 | 82.0 |
MS.gene011665.t1 | MTR_7g080780 | 29.268 | 205 | 114 | 4 | 61 | 242 | 13 | 209 | 5.03e-18 | 82.0 |
MS.gene011665.t1 | MTR_8g069740 | 36.449 | 107 | 59 | 2 | 140 | 244 | 72 | 171 | 3.01e-16 | 76.3 |
MS.gene011665.t1 | MTR_8g009010 | 45.455 | 88 | 39 | 2 | 155 | 241 | 111 | 190 | 2.44e-15 | 74.3 |
MS.gene011665.t1 | MTR_8g067280 | 52.941 | 68 | 26 | 1 | 177 | 238 | 448 | 515 | 4.44e-15 | 74.7 |
MS.gene011665.t1 | MTR_7g117670 | 51.562 | 64 | 27 | 1 | 181 | 240 | 394 | 457 | 1.57e-14 | 72.8 |
MS.gene011665.t1 | MTR_2g104590 | 39.806 | 103 | 56 | 2 | 148 | 244 | 26 | 128 | 1.96e-14 | 70.9 |
MS.gene011665.t1 | MTR_8g027495 | 53.571 | 56 | 26 | 0 | 185 | 240 | 458 | 513 | 3.99e-14 | 71.6 |
MS.gene011665.t1 | MTR_7g096350 | 48.529 | 68 | 29 | 1 | 177 | 238 | 341 | 408 | 4.28e-14 | 71.6 |
MS.gene011665.t1 | MTR_1g072320 | 39.286 | 84 | 46 | 1 | 165 | 243 | 445 | 528 | 5.04e-14 | 71.6 |
MS.gene011665.t1 | MTR_5g030430 | 51.471 | 68 | 27 | 1 | 177 | 238 | 479 | 546 | 5.05e-14 | 71.6 |
MS.gene011665.t1 | MTR_8g024790 | 50.000 | 60 | 30 | 0 | 185 | 244 | 291 | 350 | 2.28e-13 | 69.3 |
MS.gene011665.t1 | MTR_8g024770 | 48.333 | 60 | 31 | 0 | 185 | 244 | 279 | 338 | 1.50e-12 | 67.0 |
MS.gene011665.t1 | MTR_7g110810 | 47.619 | 63 | 33 | 0 | 175 | 237 | 202 | 264 | 7.50e-12 | 64.7 |
MS.gene011665.t1 | MTR_2g104500 | 32.895 | 152 | 68 | 5 | 93 | 244 | 46 | 163 | 2.22e-11 | 62.8 |
MS.gene011665.t1 | MTR_1g019240 | 37.000 | 100 | 60 | 2 | 140 | 237 | 49 | 147 | 3.72e-11 | 62.0 |
MS.gene011665.t1 | MTR_2g104650 | 41.892 | 74 | 41 | 1 | 158 | 229 | 65 | 138 | 5.55e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011665.t1 | AT4G37850 | 32.083 | 240 | 122 | 10 | 15 | 245 | 5 | 212 | 1.17e-23 | 97.4 |
MS.gene011665.t1 | AT4G37850 | 32.083 | 240 | 122 | 10 | 15 | 245 | 5 | 212 | 1.17e-23 | 97.4 |
MS.gene011665.t1 | AT2G22750 | 35.593 | 236 | 103 | 11 | 7 | 231 | 3 | 200 | 1.91e-19 | 86.3 |
MS.gene011665.t1 | AT2G22750 | 35.593 | 236 | 103 | 11 | 7 | 231 | 3 | 200 | 1.97e-19 | 85.9 |
MS.gene011665.t1 | AT2G22750 | 61.905 | 63 | 23 | 1 | 170 | 231 | 110 | 172 | 3.22e-19 | 85.1 |
MS.gene011665.t1 | AT2G22750 | 61.905 | 63 | 23 | 1 | 170 | 231 | 110 | 172 | 3.25e-19 | 85.1 |
MS.gene011665.t1 | AT2G22750 | 61.905 | 63 | 23 | 1 | 170 | 231 | 134 | 196 | 4.37e-19 | 85.1 |
MS.gene011665.t1 | AT4G16430 | 52.174 | 69 | 31 | 1 | 179 | 245 | 314 | 382 | 1.24e-15 | 76.3 |
MS.gene011665.t1 | AT1G01260 | 49.231 | 65 | 33 | 0 | 179 | 243 | 427 | 491 | 2.89e-15 | 75.1 |
MS.gene011665.t1 | AT1G01260 | 49.231 | 65 | 33 | 0 | 179 | 243 | 427 | 491 | 2.89e-15 | 75.1 |
MS.gene011665.t1 | AT1G01260 | 49.231 | 65 | 33 | 0 | 179 | 243 | 427 | 491 | 2.89e-15 | 75.1 |
MS.gene011665.t1 | AT2G22760 | 47.945 | 73 | 38 | 0 | 173 | 245 | 107 | 179 | 3.90e-15 | 73.6 |
MS.gene011665.t1 | AT2G46510 | 47.143 | 70 | 31 | 1 | 177 | 240 | 381 | 450 | 4.14e-15 | 74.7 |
MS.gene011665.t1 | AT2G22760 | 47.945 | 73 | 38 | 0 | 173 | 245 | 107 | 179 | 5.69e-15 | 73.2 |
MS.gene011665.t1 | AT4G17880 | 48.052 | 77 | 31 | 2 | 177 | 244 | 402 | 478 | 4.29e-14 | 71.6 |
MS.gene011665.t1 | AT5G46760 | 50.000 | 68 | 28 | 1 | 177 | 238 | 401 | 468 | 8.30e-14 | 70.9 |
MS.gene011665.t1 | AT1G32640 | 45.455 | 77 | 36 | 1 | 164 | 234 | 425 | 501 | 1.90e-13 | 69.7 |
MS.gene011665.t1 | AT4G09820 | 45.833 | 72 | 37 | 1 | 176 | 245 | 352 | 423 | 1.70e-12 | 67.0 |
MS.gene011665.t1 | AT4G00870 | 43.333 | 60 | 34 | 0 | 186 | 245 | 250 | 309 | 1.03e-11 | 64.3 |
MS.gene011665.t1 | AT5G46830 | 51.852 | 54 | 26 | 0 | 185 | 238 | 343 | 396 | 4.16e-11 | 62.8 |
MS.gene011665.t1 | AT2G22770 | 36.207 | 174 | 79 | 7 | 69 | 240 | 44 | 187 | 9.70e-11 | 61.2 |
Find 38 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGTTGGTAGGAGGAGAATT+TGG | 0.206656 | 8.2:-23936506 | None:intergenic |
CAGCAAATGGCTTTCTGATT+TGG | 0.214444 | 8.2:+23936076 | MS.gene011665:CDS |
GACATGAATGTTTCTCATTT+GGG | 0.281293 | 8.2:-23936603 | None:intergenic |
AGACATGAATGTTTCTCATT+TGG | 0.284212 | 8.2:-23936604 | None:intergenic |
CATTAGCATCAAGGAAGTTT+AGG | 0.295193 | 8.2:-23936226 | None:intergenic |
AAGTTTAGGTTGCATTCTTC+AGG | 0.308908 | 8.2:-23936212 | None:intergenic |
TGTTGGTAGGAGGAGAATTT+GGG | 0.316269 | 8.2:-23936505 | None:intergenic |
TCTTGTTCCTAACCTGAAAA+AGG | 0.316557 | 8.2:+23936778 | MS.gene011665:CDS |
GTTTCTTCTGATACGTTCAT+TGG | 0.319465 | 8.2:-23936053 | None:intergenic |
CAGGAGTGAGTCCACAAAAC+TGG | 0.341350 | 8.2:-23936532 | None:intergenic |
CAAATCAGAAAGCCATTTGC+TGG | 0.362893 | 8.2:-23936075 | None:intergenic |
GGCGTTGGCTCGAGACCTTT+TGG | 0.371700 | 8.2:-23936687 | None:intergenic |
GATGATGATGGAGAAAGTTT+TGG | 0.378456 | 8.2:-23936440 | None:intergenic |
GCTTTCTTTCAGCCATGATA+TGG | 0.385864 | 8.2:-23936715 | None:intergenic |
CTGCAAGAGCAATGAAGCTT+TGG | 0.405262 | 8.2:-23936754 | None:intergenic |
GTCTCAACTCAAAATCCTAA+AGG | 0.422120 | 8.2:+23936623 | MS.gene011665:CDS |
GTTGGTGATAGTTGTGGAAT+TGG | 0.425475 | 8.2:-23936303 | None:intergenic |
AGGAGTGAGTCCACAAAACT+GGG | 0.451243 | 8.2:-23936531 | None:intergenic |
TCTCAACTCAAAATCCTAAA+GGG | 0.458505 | 8.2:+23936624 | MS.gene011665:CDS |
TTTGACTTTGAGTTTAAGGC+AGG | 0.501893 | 8.2:-23936551 | None:intergenic |
TTCAGCCATGATATGGTCAT+CGG | 0.521311 | 8.2:-23936708 | None:intergenic |
CATGATATGGTCATCGGCGT+TGG | 0.524246 | 8.2:-23936702 | None:intergenic |
AAACTTCCTTGATGCTAATG+AGG | 0.524526 | 8.2:+23936229 | MS.gene011665:CDS |
ACTCTTCCTCATTAGCATCA+AGG | 0.553454 | 8.2:-23936235 | None:intergenic |
TATCAGAAGAAACCAGCAAA+TGG | 0.554188 | 8.2:+23936063 | MS.gene011665:CDS |
TGAATGTTTCTCATTTGGGG+TGG | 0.558418 | 8.2:-23936599 | None:intergenic |
CAACGCCGATGACCATATCA+TGG | 0.570050 | 8.2:+23936703 | MS.gene011665:CDS |
AAAGATGAGTTAGATGATGA+TGG | 0.577216 | 8.2:-23936452 | None:intergenic |
TAAAATTTGGTAGATGGACA+AGG | 0.590351 | 8.2:+23937067 | MS.gene011665:intron |
TGAAATTGAGAGACCAACCA+TGG | 0.603140 | 8.2:+23936370 | MS.gene011665:CDS |
TGGTAGGAGGAGAATTTGGG+AGG | 0.603292 | 8.2:-23936502 | None:intergenic |
GAATGAGTTGGTGATAGTTG+TGG | 0.603767 | 8.2:-23936309 | None:intergenic |
TGTTTCATCAGTGAATGAGT+TGG | 0.619624 | 8.2:-23936321 | None:intergenic |
ACATGAATGTTTCTCATTTG+GGG | 0.622328 | 8.2:-23936602 | None:intergenic |
GAGTGAGTCCACAAAACTGG+GGG | 0.649560 | 8.2:-23936529 | None:intergenic |
GGAGTGAGTCCACAAAACTG+GGG | 0.660208 | 8.2:-23936530 | None:intergenic |
AAGAACAAACAAGAAAACAA+AGG | 0.690066 | 8.2:+23937153 | MS.gene011665:CDS |
AGTGAGTCCACAAAACTGGG+GGG | 0.773710 | 8.2:-23936528 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAATACTGTTATAAAATT+TGG | + | chr8.2:23937054-23937073 | MS.gene011665:intron | 15.0% |
!!! | TAATTTTTTTTTGTTGTTGC+AGG | + | chr8.2:23936166-23936185 | MS.gene011665:intron | 20.0% |
!!! | TGATTTGGTAAGAAAATTAA+AGG | + | chr8.2:23936091-23936110 | MS.gene011665:intron | 20.0% |
! | AAGAACAAACAAGAAAACAA+AGG | + | chr8.2:23937153-23937172 | MS.gene011665:CDS | 25.0% |
! | CTGTTATAAAATTTGGTAGA+TGG | + | chr8.2:23937061-23937080 | MS.gene011665:intron | 25.0% |
AAAGATGAGTTAGATGATGA+TGG | - | chr8.2:23936455-23936474 | None:intergenic | 30.0% | |
ACATGAATGTTTCTCATTTG+GGG | - | chr8.2:23936605-23936624 | None:intergenic | 30.0% | |
AGACATGAATGTTTCTCATT+TGG | - | chr8.2:23936607-23936626 | None:intergenic | 30.0% | |
CAAAAACATCTCAAACCAAA+AGG | + | chr8.2:23936672-23936691 | MS.gene011665:CDS | 30.0% | |
GACATGAATGTTTCTCATTT+GGG | - | chr8.2:23936606-23936625 | None:intergenic | 30.0% | |
TAAAATTTGGTAGATGGACA+AGG | + | chr8.2:23937067-23937086 | MS.gene011665:intron | 30.0% | |
TCTCAACTCAAAATCCTAAA+GGG | + | chr8.2:23936624-23936643 | MS.gene011665:CDS | 30.0% | |
! | TGAACTCAAACATTGTTGTT+GGG | - | chr8.2:23936279-23936298 | None:intergenic | 30.0% |
!!! | ACTTTTGACTCTTTTGACTT+TGG | + | chr8.2:23936344-23936363 | MS.gene011665:CDS | 30.0% |
!!! | CTGTTTTGACTTTGAGTTTA+AGG | - | chr8.2:23936558-23936577 | None:intergenic | 30.0% |
!!! | TAAAAAGCGTTTGGAAGTTT+TGG | + | chr8.2:23937130-23937149 | MS.gene011665:CDS | 30.0% |
!!! | TGTTGCAAAGTTTTGAGTTT+TGG | - | chr8.2:23936654-23936673 | None:intergenic | 30.0% |
!!! | TTTTTTGTTGTTGCAGGAAA+TGG | + | chr8.2:23936172-23936191 | MS.gene011665:intron | 30.0% |
AAACTTCCTTGATGCTAATG+AGG | + | chr8.2:23936229-23936248 | MS.gene011665:CDS | 35.0% | |
AATGTGTATTAGTGTCGTGT+TGG | - | chr8.2:23936859-23936878 | None:intergenic | 35.0% | |
CACTTCACACTTATGTTTGA+AGG | + | chr8.2:23936804-23936823 | MS.gene011665:intron | 35.0% | |
CATTAGCATCAAGGAAGTTT+AGG | - | chr8.2:23936229-23936248 | None:intergenic | 35.0% | |
CTGAACTCAAACATTGTTGT+TGG | - | chr8.2:23936280-23936299 | None:intergenic | 35.0% | |
GTCTCAACTCAAAATCCTAA+AGG | + | chr8.2:23936623-23936642 | MS.gene011665:CDS | 35.0% | |
GTTTCTTCTGATACGTTCAT+TGG | - | chr8.2:23936056-23936075 | None:intergenic | 35.0% | |
TATCAGAAGAAACCAGCAAA+TGG | + | chr8.2:23936063-23936082 | MS.gene011665:CDS | 35.0% | |
TCTTGTTCCTAACCTGAAAA+AGG | + | chr8.2:23936778-23936797 | MS.gene011665:CDS | 35.0% | |
TGTTTCATCAGTGAATGAGT+TGG | - | chr8.2:23936324-23936343 | None:intergenic | 35.0% | |
! | AACAATTGTTTTCAGCTCCA+TGG | - | chr8.2:23936390-23936409 | None:intergenic | 35.0% |
! | TTTGACTTTGAGTTTAAGGC+AGG | - | chr8.2:23936554-23936573 | None:intergenic | 35.0% |
!! | AAGTTTAGGTTGCATTCTTC+AGG | - | chr8.2:23936215-23936234 | None:intergenic | 35.0% |
!! | GAAAGAGCTTAAAAAGCGTT+TGG | + | chr8.2:23937121-23937140 | MS.gene011665:CDS | 35.0% |
!! | TGGAGAAAGTTTTGGTGAAA+TGG | - | chr8.2:23936435-23936454 | None:intergenic | 35.0% |
!! | TGTGAAGTGTTACCTTTTTC+AGG | - | chr8.2:23936793-23936812 | None:intergenic | 35.0% |
!! | TTGAGTGCTATTTAGCTAGT+GGG | - | chr8.2:23936989-23937008 | None:intergenic | 35.0% |
!! | TTTGAGTGCTATTTAGCTAG+TGG | - | chr8.2:23936990-23937009 | None:intergenic | 35.0% |
!!! | AGTGTTACCTTTTTCAGGTT+AGG | - | chr8.2:23936788-23936807 | None:intergenic | 35.0% |
!!! | GATGATGATGGAGAAAGTTT+TGG | - | chr8.2:23936443-23936462 | None:intergenic | 35.0% |
!!! | TGAGTTTTGGATAACCCTTT+AGG | - | chr8.2:23936641-23936660 | None:intergenic | 35.0% |
ACTCTTCCTCATTAGCATCA+AGG | - | chr8.2:23936238-23936257 | None:intergenic | 40.0% | |
CAAATCAGAAAGCCATTTGC+TGG | - | chr8.2:23936078-23936097 | None:intergenic | 40.0% | |
CAGCAAATGGCTTTCTGATT+TGG | + | chr8.2:23936076-23936095 | MS.gene011665:CDS | 40.0% | |
GCTTTCTTTCAGCCATGATA+TGG | - | chr8.2:23936718-23936737 | None:intergenic | 40.0% | |
TGAAATTGAGAGACCAACCA+TGG | + | chr8.2:23936370-23936389 | MS.gene011665:CDS | 40.0% | |
TGAATGTTTCTCATTTGGGG+TGG | - | chr8.2:23936602-23936621 | None:intergenic | 40.0% | |
TTACTGTCGATGTTGTGTCT+TGG | + | chr8.2:23936928-23936947 | MS.gene011665:intron | 40.0% | |
TTCAGCCATGATATGGTCAT+CGG | - | chr8.2:23936711-23936730 | None:intergenic | 40.0% | |
! | ATTGTTTTCAGCTCCATGGT+TGG | - | chr8.2:23936386-23936405 | None:intergenic | 40.0% |
! | TGTTGGTAGGAGGAGAATTT+GGG | - | chr8.2:23936508-23936527 | None:intergenic | 40.0% |
! | TGTTGTTGGGTTTGTTCTTG+TGG | - | chr8.2:23936266-23936285 | None:intergenic | 40.0% |
!! | GAATGAGTTGGTGATAGTTG+TGG | - | chr8.2:23936312-23936331 | None:intergenic | 40.0% |
!! | GTTGGTGATAGTTGTGGAAT+TGG | - | chr8.2:23936306-23936325 | None:intergenic | 40.0% |
!! | TGAGTGCTATTTAGCTAGTG+GGG | - | chr8.2:23936988-23937007 | None:intergenic | 40.0% |
AGGAGTGAGTCCACAAAACT+GGG | - | chr8.2:23936534-23936553 | None:intergenic | 45.0% | |
CTGCAAGAGCAATGAAGCTT+TGG | - | chr8.2:23936757-23936776 | None:intergenic | 45.0% | |
! | GTGTTGGTAGGAGGAGAATT+TGG | - | chr8.2:23936509-23936528 | None:intergenic | 45.0% |
AGTGAGTCCACAAAACTGGG+GGG | - | chr8.2:23936531-23936550 | None:intergenic | 50.0% | |
CAACGCCGATGACCATATCA+TGG | + | chr8.2:23936703-23936722 | MS.gene011665:CDS | 50.0% | |
CAGGAGTGAGTCCACAAAAC+TGG | - | chr8.2:23936535-23936554 | None:intergenic | 50.0% | |
CATGATATGGTCATCGGCGT+TGG | - | chr8.2:23936705-23936724 | None:intergenic | 50.0% | |
GAGTGAGTCCACAAAACTGG+GGG | - | chr8.2:23936532-23936551 | None:intergenic | 50.0% | |
GGAGTGAGTCCACAAAACTG+GGG | - | chr8.2:23936533-23936552 | None:intergenic | 50.0% | |
TGGTAGGAGGAGAATTTGGG+AGG | - | chr8.2:23936505-23936524 | None:intergenic | 50.0% | |
! | ACCAACACCCCCCAGTTTTG+TGG | + | chr8.2:23936521-23936540 | MS.gene011665:CDS | 55.0% |
! | TCCACAAAACTGGGGGGTGT+TGG | - | chr8.2:23936525-23936544 | None:intergenic | 55.0% |
!! | CAAAACTGGGGGGTGTTGGT+AGG | - | chr8.2:23936521-23936540 | None:intergenic | 55.0% |
!! | AACTGGGGGGTGTTGGTAGG+AGG | - | chr8.2:23936518-23936537 | None:intergenic | 60.0% |
!!! | GGCGTTGGCTCGAGACCTTT+TGG | - | chr8.2:23936690-23936709 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 23936032 | 23937178 | 23936032 | ID=MS.gene011665 |
chr8.2 | mRNA | 23936032 | 23937178 | 23936032 | ID=MS.gene011665.t1;Parent=MS.gene011665 |
chr8.2 | exon | 23936032 | 23936097 | 23936032 | ID=MS.gene011665.t1.exon1;Parent=MS.gene011665.t1 |
chr8.2 | CDS | 23936032 | 23936097 | 23936032 | ID=cds.MS.gene011665.t1;Parent=MS.gene011665.t1 |
chr8.2 | exon | 23936188 | 23936255 | 23936188 | ID=MS.gene011665.t1.exon2;Parent=MS.gene011665.t1 |
chr8.2 | CDS | 23936188 | 23936255 | 23936188 | ID=cds.MS.gene011665.t1;Parent=MS.gene011665.t1 |
chr8.2 | exon | 23936295 | 23936799 | 23936295 | ID=MS.gene011665.t1.exon3;Parent=MS.gene011665.t1 |
chr8.2 | CDS | 23936295 | 23936799 | 23936295 | ID=cds.MS.gene011665.t1;Parent=MS.gene011665.t1 |
chr8.2 | exon | 23937080 | 23937178 | 23937080 | ID=MS.gene011665.t1.exon4;Parent=MS.gene011665.t1 |
chr8.2 | CDS | 23937080 | 23937178 | 23937080 | ID=cds.MS.gene011665.t1;Parent=MS.gene011665.t1 |
Gene Sequence |
Protein sequence |