AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011668

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011668.t1 MTR_4g097950 91.266 229 17 2 2 229 26 252 8.97e-136 381
MS.gene011668.t1 MTR_5g014600 53.778 225 94 4 6 226 116 334 1.46e-66 209
MS.gene011668.t1 MTR_4g092700 54.749 179 70 4 45 222 158 326 5.96e-51 168
MS.gene011668.t1 MTR_2g010450 51.397 179 77 4 45 222 177 346 2.91e-50 167
MS.gene011668.t1 MTR_5g014520 47.345 226 103 5 2 224 115 327 9.30e-50 165
MS.gene011668.t1 MTR_0250s0040 44.041 193 97 3 37 228 80 262 6.21e-47 156
MS.gene011668.t1 MTR_0246s0020 44.700 217 110 5 14 228 168 376 6.31e-45 154
MS.gene011668.t1 MTR_4g009540 42.523 214 112 4 15 222 118 326 3.31e-43 148
MS.gene011668.t1 MTR_5g014560 42.714 199 105 3 29 227 115 304 8.57e-43 147
MS.gene011668.t1 MTR_6g047570 44.149 188 94 3 37 223 151 328 2.20e-42 146
MS.gene011668.t1 MTR_4g009540 43.939 198 100 4 15 206 118 310 1.00e-40 141
MS.gene011668.t1 MTR_0246s0020 45.729 199 98 5 14 210 168 358 1.45e-40 142
MS.gene011668.t1 MTR_4g097940 44.149 188 86 4 45 228 155 327 1.86e-40 141
MS.gene011668.t1 MTR_4g067010 42.408 191 90 3 42 228 144 318 2.16e-40 141
MS.gene011668.t1 MTR_0011s0210 45.251 179 87 3 45 222 183 351 4.04e-40 141
MS.gene011668.t1 MTR_0011s0260 45.810 179 86 3 45 222 183 351 6.31e-40 140
MS.gene011668.t1 MTR_4g066460 43.077 195 99 2 34 228 144 326 9.16e-40 139
MS.gene011668.t1 MTR_4g009110 43.017 179 94 3 45 222 174 345 1.89e-38 136
MS.gene011668.t1 MTR_2g104550 40.807 223 117 6 8 228 104 313 2.26e-38 135
MS.gene011668.t1 MTR_4g097920 41.622 185 95 3 45 228 140 312 3.01e-36 130
MS.gene011668.t1 MTR_4g097920 41.622 185 95 3 45 228 155 327 4.68e-36 130
MS.gene011668.t1 MTR_0246s0050 38.835 206 107 3 24 228 131 318 7.71e-36 129
MS.gene011668.t1 MTR_4g098035 38.835 206 107 3 24 228 152 339 1.42e-35 129
MS.gene011668.t1 MTR_8g009020 41.935 186 100 3 45 227 143 323 1.00e-34 126
MS.gene011668.t1 MTR_2g104490 42.708 192 96 6 31 221 124 302 6.54e-34 124
MS.gene011668.t1 MTR_4g066380 40.933 193 101 2 36 228 144 323 1.28e-33 123
MS.gene011668.t1 MTR_2g104560 38.830 188 94 4 46 228 55 226 1.78e-32 118
MS.gene011668.t1 MTR_2g104490 44.068 177 85 6 31 206 124 287 3.56e-32 119
MS.gene011668.t1 MTR_5g014640 36.683 199 114 1 28 226 137 323 4.03e-31 117
MS.gene011668.t1 MTR_2g104500 33.971 209 123 2 14 222 74 267 7.31e-30 112
MS.gene011668.t1 MTR_7g080780 37.158 183 97 2 45 227 152 316 3.68e-28 108
MS.gene011668.t1 MTR_7g080780 37.158 183 97 2 45 227 165 329 5.50e-28 108
MS.gene011668.t1 MTR_2g104530 36.264 182 101 2 46 226 106 273 5.79e-28 107
MS.gene011668.t1 MTR_2g104590 37.374 198 95 6 28 223 50 220 6.63e-27 103
MS.gene011668.t1 MTR_2g104650 38.000 200 111 4 25 223 78 265 4.76e-26 102
MS.gene011668.t1 MTR_8g069740 38.323 167 94 3 43 208 110 268 5.43e-25 99.4
MS.gene011668.t1 MTR_8g009010 36.872 179 67 2 45 222 134 267 2.10e-24 99.0
MS.gene011668.t1 MTR_5g014550 44.275 131 64 2 75 205 54 175 1.15e-23 94.4
MS.gene011668.t1 MTR_6g047550 56.322 87 38 0 26 112 154 240 1.16e-23 95.9
MS.gene011668.t1 MTR_8g064700 31.034 203 130 3 25 227 224 416 2.02e-22 94.7
MS.gene011668.t1 MTR_7g451650 33.548 155 84 4 71 225 60 195 2.95e-18 80.1
MS.gene011668.t1 MTR_4g009510 32.044 181 101 4 44 223 42 201 8.85e-18 79.0
MS.gene011668.t1 MTR_4g009420 30.000 170 91 3 56 225 54 195 1.07e-17 78.6
MS.gene011668.t1 MTR_7g050350 32.237 152 84 4 74 225 1 133 2.77e-17 75.9
MS.gene011668.t1 MTR_7g451650 32.237 152 84 4 74 225 1 133 2.77e-17 75.9
MS.gene011668.t1 MTR_8g067280 35.762 151 87 3 45 189 462 608 4.66e-16 77.0
MS.gene011668.t1 MTR_8g024790 30.159 189 109 6 30 211 276 448 1.17e-15 75.5
MS.gene011668.t1 MTR_7g117670 54.237 59 27 0 45 103 402 460 1.21e-15 75.9
MS.gene011668.t1 MTR_8g027495 55.357 56 25 0 45 100 458 513 6.04e-15 73.6
MS.gene011668.t1 MTR_7g096350 55.556 54 24 0 45 98 355 408 1.35e-14 72.8
MS.gene011668.t1 MTR_5g030430 42.045 88 42 1 11 98 468 546 1.64e-14 72.4
MS.gene011668.t1 MTR_8g024770 30.435 161 102 3 2 162 241 391 5.91e-14 70.5
MS.gene011668.t1 MTR_1g072320 46.032 63 34 0 45 107 470 532 1.58e-13 69.7
MS.gene011668.t1 MTR_7g451650 34.559 136 70 4 71 206 60 176 4.23e-13 65.9
MS.gene011668.t1 MTR_3g030700 30.247 162 103 3 47 205 198 352 6.69e-13 67.4
MS.gene011668.t1 MTR_2g084280 28.804 184 116 4 47 229 135 304 1.13e-12 66.2
MS.gene011668.t1 MTR_3g498695 27.273 198 116 6 13 200 275 454 1.33e-12 66.6
MS.gene011668.t1 MTR_3g498695 27.273 198 116 6 13 200 275 454 1.33e-12 66.6
MS.gene011668.t1 MTR_4g009420 30.935 139 69 2 68 206 65 176 1.61e-12 64.7
MS.gene011668.t1 MTR_2g081040 30.435 161 99 4 47 200 179 333 2.29e-12 65.9
MS.gene011668.t1 MTR_7g083900 27.673 159 108 3 47 200 288 444 4.83e-12 65.1
MS.gene011668.t1 MTR_7g083900 27.673 159 108 3 47 200 288 444 5.02e-12 65.1
MS.gene011668.t1 MTR_3g104100 27.950 161 103 3 47 200 197 351 5.47e-12 64.7
MS.gene011668.t1 MTR_1g080890 34.951 103 60 1 43 145 201 296 2.71e-11 62.8
MS.gene011668.t1 MTR_1g112680 44.068 59 33 0 47 105 319 377 5.35e-11 62.0
MS.gene011668.t1 MTR_4g057270 26.250 160 102 4 47 202 151 298 6.08e-11 61.6
MS.gene011668.t1 MTR_2g038040 28.022 182 114 6 46 215 53 229 6.60e-11 60.8
MS.gene011668.t1 MTR_4g131160 34.146 164 89 5 43 201 207 356 8.12e-11 61.2
MS.gene011668.t1 MTR_4g131160 42.391 92 49 2 43 134 204 291 8.79e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011668.t1 AT4G37850 50.829 181 81 3 45 225 152 324 5.54e-50 166
MS.gene011668.t1 AT4G37850 50.829 181 81 3 45 225 152 324 5.54e-50 166
MS.gene011668.t1 AT2G22750 49.749 199 94 4 30 228 112 304 1.24e-42 146
MS.gene011668.t1 AT2G22750 49.749 199 94 4 30 228 136 328 2.40e-42 146
MS.gene011668.t1 AT2G22750 49.749 199 94 4 30 228 140 332 2.47e-42 146
MS.gene011668.t1 AT2G22750 49.749 199 93 5 30 228 112 303 3.95e-41 142
MS.gene011668.t1 AT2G22750 49.749 199 93 5 30 228 140 331 6.13e-41 142
MS.gene011668.t1 AT2G22760 40.594 202 105 5 33 226 101 295 2.68e-39 137
MS.gene011668.t1 AT2G22770 37.306 193 115 2 41 227 128 320 5.24e-35 127
MS.gene011668.t1 AT2G22760 40.331 181 94 4 33 206 101 274 9.69e-34 122
MS.gene011668.t1 AT2G46510 58.929 56 23 0 45 100 395 450 2.46e-17 80.9
MS.gene011668.t1 AT5G46760 34.437 151 82 4 45 189 415 554 1.38e-16 78.6
MS.gene011668.t1 AT1G01260 29.310 174 77 4 18 188 415 545 1.35e-15 75.9
MS.gene011668.t1 AT1G01260 29.310 174 77 4 18 188 415 545 1.35e-15 75.9
MS.gene011668.t1 AT1G01260 29.310 174 77 4 18 188 415 545 1.35e-15 75.9
MS.gene011668.t1 AT4G29930 29.146 199 117 6 27 209 39 229 1.39e-15 73.9
MS.gene011668.t1 AT2G16910 28.249 177 114 3 47 210 316 492 2.32e-15 75.1
MS.gene011668.t1 AT4G29930 30.198 202 105 8 27 206 39 226 3.55e-15 72.8
MS.gene011668.t1 AT4G29930 30.198 202 105 8 27 206 39 226 3.55e-15 72.8
MS.gene011668.t1 AT1G32640 62.000 50 19 0 45 94 452 501 1.86e-14 72.4
MS.gene011668.t1 AT4G17880 32.468 154 77 3 45 189 416 551 5.40e-14 70.9
MS.gene011668.t1 AT5G58010 40.741 108 57 2 43 146 107 211 9.53e-14 69.3
MS.gene011668.t1 AT4G29930 27.419 186 111 5 27 209 39 203 1.95e-13 67.4
MS.gene011668.t1 AT4G29930 29.412 187 103 7 27 209 39 200 2.13e-13 67.4
MS.gene011668.t1 AT4G16430 35.165 91 50 1 8 98 292 373 2.22e-13 68.9
MS.gene011668.t1 AT4G29930 29.348 184 101 7 27 206 39 197 5.20e-13 66.6
MS.gene011668.t1 AT1G12860 29.167 168 106 3 47 209 269 428 8.94e-13 67.4
MS.gene011668.t1 AT1G12860 30.189 159 98 3 47 200 269 419 9.57e-13 67.0
MS.gene011668.t1 AT5G57150 28.804 184 115 5 34 202 35 217 1.99e-12 64.7
MS.gene011668.t1 AT4G09820 27.536 138 71 2 46 183 364 472 2.01e-12 66.2
MS.gene011668.t1 AT5G57150 28.108 185 117 5 34 203 35 218 2.08e-12 64.7
MS.gene011668.t1 AT5G57150 26.882 186 125 3 34 209 34 218 2.49e-12 64.7
MS.gene011668.t1 AT5G57150 29.240 171 108 4 34 192 34 203 3.66e-12 63.9
MS.gene011668.t1 AT5G57150 28.655 171 109 4 34 192 35 204 4.04e-12 64.3
MS.gene011668.t1 AT5G46830 50.000 54 27 0 45 98 343 396 1.57e-11 63.5
MS.gene011668.t1 AT2G24260 43.299 97 44 2 43 131 43 136 1.68e-11 62.4
MS.gene011668.t1 AT4G29930 34.737 95 60 1 47 141 56 148 2.18e-11 61.2
MS.gene011668.t1 AT2G28160 28.571 189 96 6 47 217 133 300 2.41e-11 62.8
MS.gene011668.t1 AT2G28160 28.571 189 96 6 47 217 133 300 2.59e-11 62.4
MS.gene011668.t1 AT4G00870 33.000 100 65 1 5 102 207 306 3.12e-11 62.8
MS.gene011668.t1 AT2G24260 43.299 97 44 2 43 131 146 239 6.03e-11 61.6
MS.gene011668.t1 AT1G63650 27.322 183 122 5 29 202 390 570 6.57e-11 62.0
MS.gene011668.t1 AT1G63650 27.322 183 122 5 29 202 390 570 6.57e-11 62.0
MS.gene011668.t1 AT1G63650 27.322 183 122 5 29 202 390 570 6.57e-11 62.0

Find 46 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTGGTTCCACTGCTT+TGG 0.281497 8.3:-22890050 MS.gene011668:CDS
ATATAATTGCTGAGAGAATA+AGG 0.332685 8.3:-22890880 MS.gene011668:CDS
CCTTATTCCAAACCTCAAAA+AGG 0.354140 8.3:-22890819 MS.gene011668:intron
CGGGGAAGAATGTGCTGATT+AGG 0.377824 8.3:-22890162 MS.gene011668:CDS
GAACATGAGCATCCAGAAAC+TGG 0.387862 8.3:-22889154 MS.gene011668:CDS
GAAGTTAAAGCTAGTTTGTC+GGG 0.404928 8.3:-22890181 MS.gene011668:CDS
AATTTCTTCACAACCGTAAC+CGG 0.405974 8.3:+22890301 None:intergenic
AATAGAGAAACTTGGTCTCT+TGG 0.416449 8.3:-22890092 MS.gene011668:CDS
AAGGTTGGTACAACCTTCAT+TGG 0.432513 8.3:+22891019 None:intergenic
ATTCTTTGAGTTCACAACTT+TGG 0.438205 8.3:+22890985 None:intergenic
GACAAACTAGCTTTAACTTC+AGG 0.442233 8.3:+22890184 None:intergenic
GTCTGCGGATGTCAATGTTT+CGG 0.442533 8.3:-22890269 MS.gene011668:CDS
CAAAAGCAAAAGTGTAGAAC+CGG 0.446629 8.3:-22890320 MS.gene011668:CDS
ATGGACAAGGCCTCAGTGTT+GGG 0.461686 8.3:-22890403 MS.gene011668:CDS
GTTTCCATTACATGAATTTG+AGG 0.464190 8.3:+22890240 None:intergenic
CTCTCAGCAATTATATGATC+CGG 0.466944 8.3:+22890887 None:intergenic
AAAGTATGTGAAGGAGCTTA+AGG 0.470002 8.3:-22890371 MS.gene011668:CDS
CAAAAGTGTAGAACCGGTTA+CGG 0.471591 8.3:-22890314 MS.gene011668:CDS
ACTTCCTCAAATTCATGTAA+TGG 0.472899 8.3:-22890244 MS.gene011668:CDS
GGCCATAACCATCATTGCTC+AGG 0.477071 8.3:-22890029 MS.gene011668:intron
AAAATGTACCTGAGCAATGA+TGG 0.489397 8.3:+22890021 None:intergenic
GGAACCAAATGAAAAGGAAC+TGG 0.494621 8.3:+22890060 None:intergenic
AAAGTTGTGAACTCAAAGAA+TGG 0.494937 8.3:-22890983 MS.gene011668:CDS
TGTGTGATGAGTTGTAGATT+TGG 0.498172 8.3:+22890910 None:intergenic
AGCAGTGGAACCAAATGAAA+AGG 0.516842 8.3:+22890054 None:intergenic
TGAGAAAGATAAGGCAGTGA+TGG 0.525707 8.3:-22890131 MS.gene011668:CDS
TAAGGAACAAGTAAAACTGT+TGG 0.530262 8.3:-22890353 MS.gene011668:CDS
CTGAAAGAGCTATGAACTGT+TGG 0.532934 8.3:+22890843 None:intergenic
TGAAGTTAAAGCTAGTTTGT+CGG 0.533689 8.3:-22890182 MS.gene011668:CDS
GAGAAAGATAAGGCAGTGAT+GGG 0.538793 8.3:-22890130 MS.gene011668:CDS
GGAACAAGTAAAACTGTTGG+AGG 0.550452 8.3:-22890350 MS.gene011668:CDS
TATAGAGAAATAGAGAAACT+TGG 0.574558 8.3:-22890100 MS.gene011668:CDS
TACCTGAGCAATGATGGTTA+TGG 0.585304 8.3:+22890027 None:intergenic
GATGGACAAGGCCTCAGTGT+TGG 0.588121 8.3:-22890404 MS.gene011668:CDS
GATCCTCTGTGAGAAAGATA+AGG 0.589750 8.3:-22890140 MS.gene011668:CDS
GATGGTTATGGCCAAAGCAG+TGG 0.589928 8.3:+22890039 None:intergenic
CAGGAGAGCAACAAGAAGAA+CGG 0.634139 8.3:-22890941 MS.gene011668:CDS
AAGTTAAAGCTAGTTTGTCG+GGG 0.643559 8.3:-22890180 MS.gene011668:CDS
GAAATTGTCTGAACTGTCTG+CGG 0.654800 8.3:-22890284 MS.gene011668:CDS
TGAAGGTTGTACCAACCTTG+AGG 0.663007 8.3:-22891015 MS.gene011668:CDS
CATATGTTTGTAGATGGACA+AGG 0.664887 8.3:-22890416 MS.gene011668:intron
AGAAAGATAAGGCAGTGATG+GGG 0.666003 8.3:-22890129 MS.gene011668:CDS
ATCTACAACTCATCACACAC+CGG 0.675276 8.3:-22890906 MS.gene011668:CDS
CTGCCTTATCTTTCTCACAG+AGG 0.691029 8.3:+22890137 None:intergenic
TGATGCTATAAAGTATGTGA+AGG 0.702262 8.3:-22890380 MS.gene011668:CDS
TATAGCATCACCCAACACTG+AGG 0.742341 8.3:+22890393 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTTCATATTAAAAAA+TGG - chr8.3:22890753-22890772 MS.gene011668:intron 10.0%
!! AATAAAAATTGCATTAAGAT+TGG + chr8.3:22890347-22890366 None:intergenic 15.0%
!!! ATTTTTAATTAAGGACTATA+TGG - chr8.3:22890129-22890148 MS.gene011668:CDS 15.0%
!! AAGTTCAATGTAATATTACT+CGG - chr8.3:22890514-22890533 MS.gene011668:intron 20.0%
!! ACAACACATTGTTAAAAAAA+TGG + chr8.3:22890592-22890611 None:intergenic 20.0%
!!! ATTTTTTTAACAATGTGTTG+TGG - chr8.3:22890591-22890610 MS.gene011668:intron 20.0%
! ATATAATTGCTGAGAGAATA+AGG - chr8.3:22889252-22889271 MS.gene011668:intron 25.0%
! TATAGAGAAATAGAGAAACT+TGG - chr8.3:22890032-22890051 MS.gene011668:CDS 25.0%
!! TTGAAAAATGAACCTTTTTG+AGG + chr8.3:22889328-22889347 None:intergenic 25.0%
!!! CTCAGGTACATTTTTAATTA+AGG - chr8.3:22890120-22890139 MS.gene011668:CDS 25.0%
!!! TGAAAAAGTTTTAGTTTGCA+AGG - chr8.3:22890668-22890687 MS.gene011668:intron 25.0%
!!! TTTTTATTGATGTGTTGACT+AGG - chr8.3:22890359-22890378 MS.gene011668:CDS 25.0%
AAAGTTGTGAACTCAAAGAA+TGG - chr8.3:22889149-22889168 MS.gene011668:CDS 30.0%
AAATACGCAAACATCATGAA+TGG + chr8.3:22890246-22890265 None:intergenic 30.0%
AATGTAGTGTCAAATTGACT+TGG - chr8.3:22890484-22890503 MS.gene011668:intron 30.0%
AATTGTGTCTTTATGGTGTT+TGG - chr8.3:22890938-22890957 MS.gene011668:CDS 30.0%
ACACATGATTGATTGTGATT+TGG - chr8.3:22889599-22889618 MS.gene011668:intron 30.0%
ACACTCTTAAGACATTATGT+TGG + chr8.3:22890455-22890474 None:intergenic 30.0%
ACTTCCTCAAATTCATGTAA+TGG - chr8.3:22889888-22889907 MS.gene011668:intron 30.0%
AGAGTAATATGTCATCACTA+TGG - chr8.3:22890900-22890919 MS.gene011668:CDS 30.0%
ATACAAAAAATCGTGAGAGA+TGG - chr8.3:22890383-22890402 MS.gene011668:CDS 30.0%
ATTGACCATGATACCATTAT+TGG + chr8.3:22890563-22890582 None:intergenic 30.0%
CATATACTTAGATGAGTGAA+TGG - chr8.3:22890695-22890714 MS.gene011668:intron 30.0%
GATCGATGTATTAATGCTTT+GGG - chr8.3:22890815-22890834 MS.gene011668:intron 30.0%
GATTGATTGCGATTTATTGA+CGG - chr8.3:22889659-22889678 MS.gene011668:intron 30.0%
GTTTCCATTACATGAATTTG+AGG + chr8.3:22889895-22889914 None:intergenic 30.0%
TAAGGAACAAGTAAAACTGT+TGG - chr8.3:22889779-22889798 MS.gene011668:intron 30.0%
TCTCGTTGATGTTGTATTAA+CGG - chr8.3:22890626-22890645 MS.gene011668:intron 30.0%
TGATGCTATAAAGTATGTGA+AGG - chr8.3:22889752-22889771 MS.gene011668:intron 30.0%
TGTCATAAAATGTGTTTAGC+AGG - chr8.3:22890186-22890205 MS.gene011668:CDS 30.0%
TTGAACATCACAAAAGTTAG+AGG - chr8.3:22890778-22890797 MS.gene011668:intron 30.0%
TTGACGTAATTGTGTCTTTA+TGG - chr8.3:22890931-22890950 MS.gene011668:CDS 30.0%
! ATTCTTTGAGTTCACAACTT+TGG + chr8.3:22889150-22889169 None:intergenic 30.0%
! TGAAGTTAAAGCTAGTTTGT+CGG - chr8.3:22889950-22889969 MS.gene011668:intron 30.0%
! TGTATTAATGCTTTGGGTAA+TGG - chr8.3:22890821-22890840 MS.gene011668:CDS 30.0%
! TTTTCGTAAGGATCCAATAA+TGG - chr8.3:22890547-22890566 MS.gene011668:intron 30.0%
! TTTTTAGATTGTGCGTCAAT+CGG - chr8.3:22889475-22889494 MS.gene011668:intron 30.0%
!! GACTCGAACTATATTTTTGT+GGG - chr8.3:22889361-22889380 MS.gene011668:intron 30.0%
!! TGACTCGAACTATATTTTTG+TGG - chr8.3:22889360-22889379 MS.gene011668:intron 30.0%
!!! AAATGAACCTTTTTGAGGTT+TGG + chr8.3:22889323-22889342 None:intergenic 30.0%
!!! CTGTTTTTAATTAGCATGCA+AGG + chr8.3:22890428-22890447 None:intergenic 30.0%
!!! CTTTTTGAGGTTTGGAATAA+GGG + chr8.3:22889315-22889334 None:intergenic 30.0%
!!! GGTGTTTTTAGTTTTTCGTA+AGG - chr8.3:22890535-22890554 MS.gene011668:intron 30.0%
AAAAAAACTGAGAGTTGGAC+TGG - chr8.3:22891002-22891021 MS.gene011668:CDS 35.0%
AAAATGTACCTGAGCAATGA+TGG + chr8.3:22890114-22890133 None:intergenic 35.0%
AAAATGTGTTTAGCAGGAGA+GGG - chr8.3:22890192-22890211 MS.gene011668:CDS 35.0%
AAAGTATGTGAAGGAGCTTA+AGG - chr8.3:22889761-22889780 MS.gene011668:intron 35.0%
AACAATGTGTTGTGGTCAAT+TGG - chr8.3:22890599-22890618 MS.gene011668:intron 35.0%
AATAGAGAAACTTGGTCTCT+TGG - chr8.3:22890040-22890059 MS.gene011668:CDS 35.0%
AATTTCTTCACAACCGTAAC+CGG + chr8.3:22889834-22889853 None:intergenic 35.0%
ACCAAGACGTGTAAAAAATC+AGG - chr8.3:22889172-22889191 MS.gene011668:intron 35.0%
AGGATCCAATAATGGTATCA+TGG - chr8.3:22890555-22890574 MS.gene011668:intron 35.0%
CATATGTTTGTAGATGGACA+AGG - chr8.3:22889716-22889735 MS.gene011668:intron 35.0%
CCTTATTCCAAACCTCAAAA+AGG - chr8.3:22889313-22889332 MS.gene011668:intron 35.0%
CGATCGATGTATTAATGCTT+TGG - chr8.3:22890814-22890833 MS.gene011668:intron 35.0%
CTCTCAGCAATTATATGATC+CGG + chr8.3:22889248-22889267 None:intergenic 35.0%
CTTGTCCATCTACAAACATA+TGG + chr8.3:22889718-22889737 None:intergenic 35.0%
GAGAGATGGAAATCAATTTC+TGG - chr8.3:22890397-22890416 MS.gene011668:CDS 35.0%
GTACTCCATATGTTTGTAGA+TGG - chr8.3:22889710-22889729 MS.gene011668:intron 35.0%
TAAAATGTGTTTAGCAGGAG+AGG - chr8.3:22890191-22890210 MS.gene011668:CDS 35.0%
TCATGATGTTTGCGTATTTG+TGG - chr8.3:22890247-22890266 MS.gene011668:CDS 35.0%
TGTGTGATGAGTTGTAGATT+TGG + chr8.3:22889225-22889244 None:intergenic 35.0%
! AAGTTAAAGCTAGTTTGTCG+GGG - chr8.3:22889952-22889971 MS.gene011668:intron 35.0%
! AATGCCAGTTCCTTTTCATT+TGG - chr8.3:22890068-22890087 MS.gene011668:CDS 35.0%
! AATGCTTTGGGTAATGGTAA+TGG - chr8.3:22890827-22890846 MS.gene011668:CDS 35.0%
! AGATGGAAATCAATTTCTGG+TGG - chr8.3:22890400-22890419 MS.gene011668:CDS 35.0%
! CAAAAGCAAAAGTGTAGAAC+CGG - chr8.3:22889812-22889831 MS.gene011668:intron 35.0%
! GAAGTTAAAGCTAGTTTGTC+GGG - chr8.3:22889951-22889970 MS.gene011668:intron 35.0%
!! GACAAACTAGCTTTAACTTC+AGG + chr8.3:22889951-22889970 None:intergenic 35.0%
!!! AACTTTGGTTTTTGACCTCA+AGG + chr8.3:22889135-22889154 None:intergenic 35.0%
!!! CCTTTTTGAGGTTTGGAATA+AGG + chr8.3:22889316-22889335 None:intergenic 35.0%
!!! TCAGTTTTTTTGCCAGTTTC+TGG + chr8.3:22890993-22891012 None:intergenic 35.0%
!!! TCCTGATTTTTTACACGTCT+TGG + chr8.3:22889176-22889195 None:intergenic 35.0%
AGAAAGATAAGGCAGTGATG+GGG - chr8.3:22890003-22890022 MS.gene011668:intron 40.0%
AGCAGTGGAACCAAATGAAA+AGG + chr8.3:22890081-22890100 None:intergenic 40.0%
ATCTACAACTCATCACACAC+CGG - chr8.3:22889226-22889245 MS.gene011668:intron 40.0%
ATGAATGGATGCAATCCAAC+AGG + chr8.3:22890231-22890250 None:intergenic 40.0%
CTGAAAGAGCTATGAACTGT+TGG + chr8.3:22889292-22889311 None:intergenic 40.0%
CTGGCAAAAAAACTGAGAGT+TGG - chr8.3:22890997-22891016 MS.gene011668:CDS 40.0%
GAAATTGTCTGAACTGTCTG+CGG - chr8.3:22889848-22889867 MS.gene011668:intron 40.0%
GAGAAAGATAAGGCAGTGAT+GGG - chr8.3:22890002-22890021 MS.gene011668:intron 40.0%
GATCCTCTGTGAGAAAGATA+AGG - chr8.3:22889992-22890011 MS.gene011668:intron 40.0%
GGAACAAGTAAAACTGTTGG+AGG - chr8.3:22889782-22889801 MS.gene011668:intron 40.0%
GGAACCAAATGAAAAGGAAC+TGG + chr8.3:22890075-22890094 None:intergenic 40.0%
TACCTGAGCAATGATGGTTA+TGG + chr8.3:22890108-22890127 None:intergenic 40.0%
TCTTTATGGTGTTTGGCAGA+TGG - chr8.3:22890945-22890964 MS.gene011668:CDS 40.0%
TGAGAAAGATAAGGCAGTGA+TGG - chr8.3:22890001-22890020 MS.gene011668:intron 40.0%
! CAAAAGTGTAGAACCGGTTA+CGG - chr8.3:22889818-22889837 MS.gene011668:intron 40.0%
! TTCATTTGGTTCCACTGCTT+TGG - chr8.3:22890082-22890101 MS.gene011668:CDS 40.0%
!! TTGGTTTTTGACCTCAAGGT+TGG + chr8.3:22889131-22889150 None:intergenic 40.0%
AATGGATGCAATCCAACAGG+AGG + chr8.3:22890228-22890247 None:intergenic 45.0%
ATGGATGCAATCCAACAGGA+GGG + chr8.3:22890227-22890246 None:intergenic 45.0%
CAGGAGAGCAACAAGAAGAA+CGG - chr8.3:22889191-22889210 MS.gene011668:intron 45.0%
CTGCCTTATCTTTCTCACAG+AGG + chr8.3:22889998-22890017 None:intergenic 45.0%
GAACATGAGCATCCAGAAAC+TGG - chr8.3:22890978-22890997 MS.gene011668:CDS 45.0%
GTCTGCGGATGTCAATGTTT+CGG - chr8.3:22889863-22889882 MS.gene011668:intron 45.0%
TATAGCATCACCCAACACTG+AGG + chr8.3:22889742-22889761 None:intergenic 45.0%
TGAAGGTTGTACCAACCTTG+AGG - chr8.3:22889117-22889136 MS.gene011668:CDS 45.0%
TGTTTAGCAGGAGAGGGATA+TGG - chr8.3:22890198-22890217 MS.gene011668:CDS 45.0%
! GTGAATGGACTCACACTTGA+AGG - chr8.3:22890710-22890729 MS.gene011668:intron 45.0%
!! GCTTTGGGTAATGGTAATGG+TGG - chr8.3:22890830-22890849 MS.gene011668:CDS 45.0%
!! GGGTAATGGTAATGGTGGTA+AGG - chr8.3:22890835-22890854 MS.gene011668:CDS 45.0%
!!! AAATTTTAAACTTAATATTT+TGG - chr8.3:22890295-22890314 MS.gene011668:CDS 5.0%
ATGGACAAGGCCTCAGTGTT+GGG - chr8.3:22889729-22889748 MS.gene011668:intron 50.0%
GATGGTTATGGCCAAAGCAG+TGG + chr8.3:22890096-22890115 None:intergenic 50.0%
GGATATGGATTCCCTCCTGT+TGG - chr8.3:22890213-22890232 MS.gene011668:CDS 50.0%
GGCCATAACCATCATTGCTC+AGG - chr8.3:22890103-22890122 MS.gene011668:CDS 50.0%
!! CGGGGAAGAATGTGCTGATT+AGG - chr8.3:22889970-22889989 MS.gene011668:intron 50.0%
GATGGACAAGGCCTCAGTGT+TGG - chr8.3:22889728-22889747 MS.gene011668:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 22889116 22891038 22889116 ID=MS.gene011668
chr8.3 mRNA 22889116 22891038 22889116 ID=MS.gene011668.t1;Parent=MS.gene011668
chr8.3 exon 22890820 22891038 22890820 ID=MS.gene011668.t1.exon1;Parent=MS.gene011668.t1
chr8.3 CDS 22890820 22891038 22890820 ID=cds.MS.gene011668.t1;Parent=MS.gene011668.t1
chr8.3 exon 22890030 22890425 22890030 ID=MS.gene011668.t1.exon2;Parent=MS.gene011668.t1
chr8.3 CDS 22890030 22890425 22890030 ID=cds.MS.gene011668.t1;Parent=MS.gene011668.t1
chr8.3 exon 22889116 22889190 22889116 ID=MS.gene011668.t1.exon3;Parent=MS.gene011668.t1
chr8.3 CDS 22889116 22889190 22889116 ID=cds.MS.gene011668.t1;Parent=MS.gene011668.t1
Gene Sequence

>MS.gene011668

ATGAAGGTTGTACCAACCTTGAGGTCAAAAACCAAAGTTGTGAACTCAAAGAATGGACCAAGACGTGTAAAAAATCAGGAGAGCAACAAGAAGAACGGTTCACTTTCCAAATCTACAACTCATCACACACCGGATCATATAATTGCTGAGAGAATAAGGAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCCCTTATTCCAAACCTCAAAAAGGTTCATTTTTCAATTTATACACATTTGACTCGAACTATATTTTTGTGGGTATGCTAATATGATTCAATTCATATACAATTTGATTACTAAGTTTTTTTTTTCTTTAAGATTTAATTTATATTCATTCATAATGTAAAGATTTTTTAGATTGTGCGTCAATCGGATCAATCATAATCGTTCGATAATTAAAAAAGTTTGACTTTTAATCTTATCATCAGAAACATTTGACTTTATTCTCGTGATTACTTCTAAAATCACGTTGACACACATGATTGATTGTGATTTGGCGTATCAAAATTAAACTACAATCACATTGACACATGTGATTGATTGCGATTTATTGACGGCGTAACAAAATTAAACTATACTAATAATGTACTCCATATGTTTGTAGATGGACAAGGCCTCAGTGTTGGGTGATGCTATAAAGTATGTGAAGGAGCTTAAGGAACAAGTAAAACTGTTGGAGGAGCAAAGCAAAAGCAAAAGTGTAGAACCGGTTACGGTTGTGAAGAAATTGTCTGAACTGTCTGCGGATGTCAATGTTTCGGACACTTCCTCAAATTCATGTAATGGAAACTCTGATGAAACATCAAAAACAAATCTGTCACTACCTGAAGTTAAAGCTAGTTTGTCGGGGAAGAATGTGCTGATTAGGATCCTCTGTGAGAAAGATAAGGCAGTGATGGGGAATGTATATAGAGAAATAGAGAAACTTGGTCTCTTGGTTATCAATGCCAGTTCCTTTTCATTTGGTTCCACTGCTTTGGCCATAACCATCATTGCTCAGGTACATTTTTAATTAAGGACTATATGGTTATGATAATGATACTACTTTCGATAAATAAAAATGTCATAAAATGTGTTTAGCAGGAGAGGGATATGGATTCCCTCCTGTTGGATTGCATCCATTCATGATGTTTGCGTATTTGTGGTTGTTTGATCAAAATTGAACGATTCAAATTTTAAACTTAATATTTTGGATTTTACGAAAATATTTTTTTACTGTCCAATCTTAATGCAATTTTTATTGATGTGTTGACTAGGAATACAAAAAATCGTGAGAGATGGAAATCAATTTCTGGTGGAACCTTGCATGCTAATTAAAAACAGCTGACCAACATAATGTCTTAAGAGTGTTTTTGTTAAAATGTAGTGTCAAATTGACTTGGTTGCTTAAAGTTCAATGTAATATTACTCGGTGTTTTTAGTTTTTCGTAAGGATCCAATAATGGTATCATGGTCAATAGTATACCATTTTTTTAACAATGTGTTGTGGTCAATTGGTGTGTCTCGTTGATGTTGTATTAACGGTGTTGCAAATGAATGTGAATGAAAAAGTTTTAGTTTGCAAGGAAATCATATACTTAGATGAGTGAATGGACTCACACTTGAAGGAGAGATTGTTAAGTGTGAGTAGTAATTTCATATTAAAAAATGGATTTGAACATCACAAAAGTTAGAGGACTCATATACGATCGATCGATGTATTAATGCTTTGGGTAATGGTAATGGTGGTAAGGAGAGCAATGTCTCATCATTTGTTGTGTATATTTTTTTATAAGAGAGTAATATGTCATCACTATGGACTCAGAATTGACGTAATTGTGTCTTTATGGTGTTTGGCAGATGGAGAATGAATTGAACATGAGCATCCAGAAACTGGCAAAAAAACTGAGAGTTGGACTGGTGCAATTGAATTAG
Protein sequence

>MS.gene011668.t1

MKVVPTLRSKTKVVNSKNGPRRVKNQESNKKNGSLSKSTTHHTPDHIIAERIRREKISQQFIALSALIPNLKKMDKASVLGDAIKYVKELKEQVKLLEEQSKSKSVEPVTVVKKLSELSADVNVSDTSSNSCNGNSDETSKTNLSLPEVKASLSGKNVLIRILCEKDKAVMGNVYREIEKLGLLVINASSFSFGSTALAITIIAQMENELNMSIQKLAKKLRVGLVQLN