AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011671

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011671.t1 MTR_4g097920 86.826 334 37 4 1 333 1 328 0.0 581
MS.gene011671.t1 MTR_4g097940 86.527 334 38 4 1 333 1 328 0.0 578
MS.gene011671.t1 MTR_4g097920 86.207 319 37 4 16 333 1 313 0.0 548
MS.gene011671.t1 MTR_5g014640 43.978 357 137 11 1 329 1 322 2.99e-78 242
MS.gene011671.t1 MTR_2g010450 39.205 352 175 14 2 325 5 345 5.17e-57 188
MS.gene011671.t1 MTR_4g092700 38.226 327 162 11 33 333 21 333 2.61e-56 186
MS.gene011671.t1 MTR_8g009020 47.340 188 86 4 153 329 136 321 9.38e-51 172
MS.gene011671.t1 MTR_5g014600 49.468 188 78 4 158 329 147 333 1.27e-50 171
MS.gene011671.t1 MTR_0011s0210 49.708 171 82 2 158 325 181 350 2.73e-49 169
MS.gene011671.t1 MTR_6g047570 37.153 288 153 6 42 325 63 326 4.72e-49 167
MS.gene011671.t1 MTR_0250s0040 46.512 172 88 3 157 325 85 255 1.65e-48 164
MS.gene011671.t1 MTR_0011s0260 49.708 171 82 2 158 325 181 350 3.46e-48 166
MS.gene011671.t1 MTR_5g014520 44.248 226 119 4 105 325 101 324 3.55e-48 165
MS.gene011671.t1 MTR_2g104550 48.677 189 90 3 146 329 124 310 1.02e-47 163
MS.gene011671.t1 MTR_0246s0020 41.767 249 110 9 90 325 143 369 1.21e-46 162
MS.gene011671.t1 MTR_4g067010 44.019 209 98 5 128 333 127 319 3.92e-46 159
MS.gene011671.t1 MTR_5g014560 47.753 178 88 3 159 332 130 306 5.19e-45 156
MS.gene011671.t1 MTR_4g066460 42.512 207 110 4 128 329 121 323 7.85e-45 156
MS.gene011671.t1 MTR_4g009540 44.388 196 98 5 143 329 136 329 4.90e-43 151
MS.gene011671.t1 MTR_0246s0050 42.077 183 101 2 143 325 134 311 2.42e-41 147
MS.gene011671.t1 MTR_4g097950 41.176 255 119 8 99 332 7 251 3.26e-41 144
MS.gene011671.t1 MTR_4g098035 42.077 183 101 2 143 325 155 332 3.55e-41 147
MS.gene011671.t1 MTR_4g009110 45.109 184 94 3 152 329 166 348 4.91e-41 147
MS.gene011671.t1 MTR_0246s0020 41.453 234 102 9 90 310 143 354 5.60e-41 147
MS.gene011671.t1 MTR_4g066380 42.857 203 106 5 128 325 119 316 1.23e-39 142
MS.gene011671.t1 MTR_2g104490 44.324 185 101 2 146 329 123 306 2.54e-39 141
MS.gene011671.t1 MTR_8g009010 40.678 177 70 3 153 328 127 269 8.27e-37 135
MS.gene011671.t1 MTR_4g009540 43.503 177 89 5 143 310 136 310 3.54e-36 133
MS.gene011671.t1 MTR_2g104560 38.919 185 103 4 153 332 47 226 1.07e-35 129
MS.gene011671.t1 MTR_7g080780 45.251 179 91 2 151 329 143 314 3.06e-35 130
MS.gene011671.t1 MTR_7g080780 45.251 179 91 2 151 329 156 327 3.46e-35 130
MS.gene011671.t1 MTR_2g104590 37.912 182 85 3 153 328 62 221 3.92e-35 128
MS.gene011671.t1 MTR_2g104490 43.275 171 95 2 146 315 123 292 5.50e-33 124
MS.gene011671.t1 MTR_8g069740 41.718 163 87 4 153 309 105 265 7.17e-32 120
MS.gene011671.t1 MTR_2g104650 42.623 183 95 5 153 328 87 266 1.29e-31 120
MS.gene011671.t1 MTR_2g104500 41.111 180 91 5 156 329 100 270 9.43e-31 117
MS.gene011671.t1 MTR_2g104530 37.019 208 111 5 129 329 78 272 3.22e-30 116
MS.gene011671.t1 MTR_7g451650 41.216 148 65 5 185 325 59 191 6.12e-22 92.0
MS.gene011671.t1 MTR_6g047550 56.944 72 31 0 156 227 169 240 1.65e-21 92.8
MS.gene011671.t1 MTR_5g014550 39.370 127 73 2 190 313 54 179 2.26e-21 90.5
MS.gene011671.t1 MTR_4g009510 36.875 160 91 6 171 329 53 203 6.09e-21 89.7
MS.gene011671.t1 MTR_4g009420 35.625 160 76 4 171 325 54 191 3.94e-20 87.0
MS.gene011671.t1 MTR_7g050350 38.028 142 70 4 189 325 1 129 1.33e-19 84.0
MS.gene011671.t1 MTR_7g451650 38.028 142 70 4 189 325 1 129 1.33e-19 84.0
MS.gene011671.t1 MTR_7g451650 40.000 135 63 4 185 314 59 180 2.26e-19 84.7
MS.gene011671.t1 MTR_4g009420 39.231 130 63 3 185 314 67 180 1.80e-17 80.1
MS.gene011671.t1 MTR_8g024790 28.333 180 111 6 160 327 291 464 1.15e-15 77.8
MS.gene011671.t1 MTR_1g072320 34.459 148 80 4 160 292 470 615 1.01e-14 75.5
MS.gene011671.t1 MTR_8g027495 33.051 118 62 2 156 267 454 560 1.77e-13 71.6
MS.gene011671.t1 MTR_5g030430 32.258 155 73 7 160 289 493 640 2.45e-13 71.2
MS.gene011671.t1 MTR_7g096350 48.571 70 33 1 144 213 342 408 4.03e-13 70.5
MS.gene011671.t1 MTR_8g064700 30.058 173 111 4 143 307 228 398 8.61e-13 68.9
MS.gene011671.t1 MTR_8g024770 31.034 116 69 2 160 266 279 392 9.03e-13 69.3
MS.gene011671.t1 MTR_8g067280 34.677 124 67 3 160 269 462 585 1.52e-12 68.9
MS.gene011671.t1 MTR_7g117670 51.786 56 27 0 160 215 402 457 2.03e-12 68.2
MS.gene011671.t1 MTR_8g098275 41.791 67 39 0 157 223 305 371 9.34e-12 66.2
MS.gene011671.t1 MTR_8g098275 41.791 67 39 0 157 223 398 464 1.03e-11 66.2
MS.gene011671.t1 MTR_8g098275 41.791 67 39 0 157 223 241 307 1.03e-11 65.9
MS.gene011671.t1 MTR_4g057270 28.289 152 91 5 162 302 151 295 9.14e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011671.t1 AT4G37850 43.825 251 113 7 102 333 87 328 1.13e-53 179
MS.gene011671.t1 AT4G37850 43.825 251 113 7 102 333 87 328 1.13e-53 179
MS.gene011671.t1 AT2G22760 51.667 180 79 5 153 325 112 290 5.32e-53 176
MS.gene011671.t1 AT2G22760 51.829 164 72 4 153 310 112 274 1.12e-47 162
MS.gene011671.t1 AT2G22770 44.444 225 97 5 129 329 98 318 3.55e-47 162
MS.gene011671.t1 AT2G22750 43.825 251 108 9 103 332 94 332 8.28e-46 159
MS.gene011671.t1 AT2G22750 43.825 251 108 9 103 332 66 304 9.37e-46 158
MS.gene011671.t1 AT2G22750 43.825 251 108 9 103 332 90 328 1.35e-45 158
MS.gene011671.t1 AT2G22750 43.825 251 107 10 103 332 66 303 2.18e-44 154
MS.gene011671.t1 AT2G22750 43.825 251 107 10 103 332 94 331 3.38e-44 154
MS.gene011671.t1 AT1G32640 36.691 139 78 6 160 289 452 589 1.13e-15 78.2
MS.gene011671.t1 AT2G46510 47.561 82 40 1 134 215 372 450 5.31e-15 76.3
MS.gene011671.t1 AT1G01260 26.556 241 142 7 27 267 316 521 6.04e-14 73.2
MS.gene011671.t1 AT1G01260 26.556 241 142 7 27 267 316 521 6.04e-14 73.2
MS.gene011671.t1 AT1G01260 26.556 241 142 7 27 267 316 521 6.04e-14 73.2
MS.gene011671.t1 AT5G46760 34.188 117 70 2 160 269 415 531 3.53e-12 67.8
MS.gene011671.t1 AT4G16430 42.045 88 46 2 141 223 297 384 3.87e-12 67.4
MS.gene011671.t1 AT1G63650 35.955 89 56 1 155 242 400 488 4.05e-12 67.4
MS.gene011671.t1 AT1G63650 35.955 89 56 1 155 242 400 488 4.05e-12 67.4
MS.gene011671.t1 AT1G63650 35.955 89 56 1 155 242 400 488 4.05e-12 67.4
MS.gene011671.t1 AT4G17880 33.333 120 63 3 160 269 416 528 5.38e-12 67.0
MS.gene011671.t1 AT4G09820 50.820 61 30 0 153 213 356 416 1.41e-11 65.9
MS.gene011671.t1 AT1G12860 29.518 166 101 6 161 314 268 429 4.99e-11 63.9
MS.gene011671.t1 AT1G12860 30.769 156 92 6 161 304 268 419 8.02e-11 63.2
MS.gene011671.t1 AT2G16910 50.000 56 28 0 161 216 315 370 8.80e-11 63.5

Find 58 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTGAAGCAAGGGTTTC+TGG 0.149381 8.3:-22823258 MS.gene011671:CDS
GATGGACAAGGCAACTATTT+TGG 0.186609 8.3:-22823445 MS.gene011671:CDS
TGCATTCCAGTTTGATGATA+TGG 0.223416 8.3:-22824083 MS.gene011671:CDS
TTTGAATTAACAGGGATTAA+TGG 0.241351 8.3:-22824152 MS.gene011671:intron
GCTCTTTCATCTCTTCTTCC+TGG 0.251328 8.3:-22823647 MS.gene011671:CDS
TTCACCTTTGCATCCATGTT+TGG 0.279378 8.3:+22823848 None:intergenic
TCTTCTTCCTGGACTCAAAA+AGG 0.317343 8.3:-22823636 MS.gene011671:intron
TGTTGTATACTTACAAATTC+AGG 0.318270 8.3:+22824384 None:intergenic
AGAATTGTTCTGTGTGCTTT+CGG 0.323320 8.3:+22823976 None:intergenic
AGAATATTGCTTGACAATAA+AGG 0.327738 8.3:-22822696 MS.gene011671:CDS
TATGGAGAAAACTTGAATTT+CGG 0.349571 8.3:-22823803 MS.gene011671:CDS
TGTAAATAGAAACCCTATTC+AGG 0.354615 8.3:-22823729 MS.gene011671:CDS
AGCAGTTCTACTTTGCCATT+TGG 0.363549 8.3:-22823138 MS.gene011671:CDS
ACATGATCTTGAGCCTGAAT+AGG 0.366395 8.3:+22823716 None:intergenic
CATGATCTTGAGCCTGAATA+GGG 0.371001 8.3:+22823717 None:intergenic
TCGCTTGTTGTTGATGTTGT+TGG 0.394714 8.3:+22824006 None:intergenic
TGATATAACAATTGTTGCTC+AGG 0.416686 8.3:-22823103 MS.gene011671:intron
AGTATGCCATATCATCAAAC+TGG 0.434714 8.3:+22824077 None:intergenic
TTGACCAGGACTACTTTCAA+TGG 0.436916 8.3:+22823949 None:intergenic
ATGAAAGAGCAATGAATCTC+TGG 0.443321 8.3:+22823660 None:intergenic
TGACCAGGACTACTTTCAAT+GGG 0.452873 8.3:+22823950 None:intergenic
TGAGTATTGCGGTCGCAGTT+CGG 0.460089 8.3:+22823193 None:intergenic
CAGCAGCAACCTTGTTCTCT+CGG 0.463262 8.3:+22823750 None:intergenic
TTCCCCATTGAAAGTAGTCC+TGG 0.464737 8.3:-22823953 MS.gene011671:CDS
TCAAGATAGTTATTTCCAAA+TGG 0.471769 8.3:+22823123 None:intergenic
AAGAAGCCTAAAACTGAGAT+CGG 0.487088 8.3:-22823827 MS.gene011671:CDS
CCTAAAACTGAGATCGGGTA+TGG 0.488086 8.3:-22823821 MS.gene011671:CDS
TGGAATGCATATGAATCCAT+TGG 0.489021 8.3:+22824097 None:intergenic
GGAACGAGTGAAGACTTTAG+AGG 0.491147 8.3:-22823391 MS.gene011671:CDS
TACAAATTCAGGCATGTAGT+TGG 0.494277 8.3:+22824395 None:intergenic
TGGTTCAAAAGAAATGATCT+TGG 0.499628 8.3:+22823868 None:intergenic
AGGAATAAGTACTCTCTTGT+GGG 0.507070 8.3:+22824035 None:intergenic
TCAGGCTCAAGATCATGTTA+TGG 0.510343 8.3:-22823711 MS.gene011671:CDS
ACTTCCGAAAATTGAAGCAA+GGG 0.522336 8.3:-22823265 MS.gene011671:CDS
TCTCGTAAGGAGCATAAGTC+AGG 0.525482 8.3:-22822672 MS.gene011671:CDS
CACTTCCGAAAATTGAAGCA+AGG 0.531807 8.3:-22823266 MS.gene011671:CDS
TGTTCTGTGTGCTTTCGGAA+TGG 0.533620 8.3:+22823981 None:intergenic
AAATTCAGGCATGTAGTTGG+TGG 0.541463 8.3:+22824398 None:intergenic
GTTGATGTTGTTGGTATGAG+AGG 0.543066 8.3:+22824015 None:intergenic
GAGGAATAAGTACTCTCTTG+TGG 0.546666 8.3:+22824034 None:intergenic
AGAAGCCTAAAACTGAGATC+GGG 0.557163 8.3:-22823826 MS.gene011671:CDS
TGAACCAAACATGGATGCAA+AGG 0.563886 8.3:-22823852 MS.gene011671:CDS
AAAACATATGAAGCAACTAC+AGG 0.565504 8.3:-22823412 MS.gene011671:CDS
ATCCATTGTGACAAATATTG+TGG 0.568305 8.3:-22823216 MS.gene011671:CDS
TTCGGAAGTGTGATATCTCA+AGG 0.572553 8.3:-22823785 MS.gene011671:CDS
TTCTAATTCGATGAGTATTG+CGG 0.578276 8.3:+22823182 None:intergenic
GGCCACAATATTTGTCACAA+TGG 0.583000 8.3:+22823214 None:intergenic
TAGTGATCATGAATATCCAA+TGG 0.584018 8.3:-22824113 MS.gene011671:CDS
TGACAATAAAGGATCTCGTA+AGG 0.599743 8.3:-22822685 MS.gene011671:CDS
TTATTATAACCGAGAGAACA+AGG 0.606925 8.3:-22823759 MS.gene011671:CDS
GAATTAACAGGGATTAATGG+AGG 0.608513 8.3:-22824149 MS.gene011671:intron
GGAATAAGTACTCTCTTGTG+GGG 0.633544 8.3:+22824036 None:intergenic
ACTTTGCATGCAGATGGACA+AGG 0.646531 8.3:-22823457 MS.gene011671:intron
TATGGCAGAAAGAAGACGAA+GGG 0.657033 8.3:-22823693 MS.gene011671:CDS
GCTGAAGCAACAGATTGACC+AGG 0.668418 8.3:+22823935 None:intergenic
TTATGGCAGAAAGAAGACGA+AGG 0.702887 8.3:-22823694 MS.gene011671:CDS
GACCAGGACTACTTTCAATG+GGG 0.715740 8.3:+22823951 None:intergenic
TAGAACTGCTCTGAACAGTG+AGG 0.757817 8.3:+22823151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTCAAAGAAAAAAAAA+AGG + chr8.3:22822904-22822923 None:intergenic 10.0%
!!! AAGTTTTAAAAATTTTAAGT+TGG + chr8.3:22824113-22824132 None:intergenic 10.0%
!!! TAAAATTTAGAATTTTTGTA+TGG + chr8.3:22822874-22822893 None:intergenic 10.0%
!!! ATTTTAATTAGGTTTTAAGT+TGG + chr8.3:22824141-22824160 None:intergenic 15.0%
!!! CAGATTTTATTTAATTTTCA+TGG - chr8.3:22824317-22824336 MS.gene011671:intron 15.0%
!!! TTTTTTTCTTTGAATTAACA+GGG - chr8.3:22822906-22822925 MS.gene011671:intron 15.0%
!!! TTTTTTTTCTTTGAATTAAC+AGG - chr8.3:22822905-22822924 MS.gene011671:intron 15.0%
!! TCATGTTGATATATTCTATT+TGG - chr8.3:22824223-22824242 MS.gene011671:intron 20.0%
!!! CTCTTATGATCATTTTAATT+AGG + chr8.3:22824152-22824171 None:intergenic 20.0%
!!! GTTTATTTTAAGTTTCTAGT+TGG - chr8.3:22824054-22824073 MS.gene011671:CDS 20.0%
! AGAATATTGCTTGACAATAA+AGG - chr8.3:22824370-22824389 MS.gene011671:intron 25.0%
! TATACAACATAGTGTATGTT+TGG - chr8.3:22822696-22822715 MS.gene011671:CDS 25.0%
! TATGGAGAAAACTTGAATTT+CGG - chr8.3:22823263-22823282 MS.gene011671:CDS 25.0%
! TGTTAGTATAGTTGCAATTT+AGG - chr8.3:22823528-22823547 MS.gene011671:intron 25.0%
! TGTTGTATACTTACAAATTC+AGG + chr8.3:22822685-22822704 None:intergenic 25.0%
! TTTGAATTAACAGGGATTAA+TGG - chr8.3:22822914-22822933 MS.gene011671:intron 25.0%
!! GATATTATGGTTTTCAATTG+CGG + chr8.3:22823561-22823580 None:intergenic 25.0%
!! TAAGCCTCTATATTTTATCT+CGG - chr8.3:22824282-22824301 MS.gene011671:intron 25.0%
!! TCAAGATAGTTATTTCCAAA+TGG + chr8.3:22823946-22823965 None:intergenic 25.0%
!! TTTTCCGAGATAAAATATAG+AGG + chr8.3:22824289-22824308 None:intergenic 25.0%
AAAACATATGAAGCAACTAC+AGG - chr8.3:22823654-22823673 MS.gene011671:CDS 30.0%
AACTAGGCTAGAACATAAAA+TGG + chr8.3:22824176-22824195 None:intergenic 30.0%
ATCCATTGTGACAAATATTG+TGG - chr8.3:22823850-22823869 MS.gene011671:CDS 30.0%
CATGAACAAAGAATTCTACT+CGG + chr8.3:22824208-22824227 None:intergenic 30.0%
CTACTTGATAGAGGATATTA+TGG + chr8.3:22823574-22823593 None:intergenic 30.0%
TAGTGATCATGAATATCCAA+TGG - chr8.3:22822953-22822972 MS.gene011671:intron 30.0%
TGATATAACAATTGTTGCTC+AGG - chr8.3:22823963-22823982 MS.gene011671:CDS 30.0%
TGGTTAATACTACTTGATAG+AGG + chr8.3:22823583-22823602 None:intergenic 30.0%
TGGTTCAAAAGAAATGATCT+TGG + chr8.3:22823201-22823220 None:intergenic 30.0%
TGTAAATAGAAACCCTATTC+AGG - chr8.3:22823337-22823356 MS.gene011671:CDS 30.0%
TTATTATAACCGAGAGAACA+AGG - chr8.3:22823307-22823326 MS.gene011671:CDS 30.0%
TTTGGATTTGCAAAGAGATT+CGG - chr8.3:22822714-22822733 MS.gene011671:intron 30.0%
! CATTTCTTTTGAACCAAACA+TGG - chr8.3:22823205-22823224 MS.gene011671:CDS 30.0%
! TTCTAATTCGATGAGTATTG+CGG + chr8.3:22823887-22823906 None:intergenic 30.0%
! TTTCAAAGCGAGTAATGTTT+TGG - chr8.3:22824086-22824105 MS.gene011671:CDS 30.0%
!!! AGCTGATTCGACTTTTTTAT+TGG + chr8.3:22823710-22823729 None:intergenic 30.0%
AAAATTGAAGCAAGGGTTTC+TGG - chr8.3:22823808-22823827 MS.gene011671:CDS 35.0%
AAGAAGCCTAAAACTGAGAT+CGG - chr8.3:22823239-22823258 MS.gene011671:CDS 35.0%
ACTTCCGAAAATTGAAGCAA+GGG - chr8.3:22823801-22823820 MS.gene011671:CDS 35.0%
AGAATTGTTCTGTGTGCTTT+CGG + chr8.3:22823093-22823112 None:intergenic 35.0%
AGGAATAAGTACTCTCTTGT+GGG + chr8.3:22823034-22823053 None:intergenic 35.0%
AGTATGCCATATCATCAAAC+TGG + chr8.3:22822992-22823011 None:intergenic 35.0%
ATGAAAGAGCAATGAATCTC+TGG + chr8.3:22823409-22823428 None:intergenic 35.0%
GAATTAACAGGGATTAATGG+AGG - chr8.3:22822917-22822936 MS.gene011671:intron 35.0%
GCTTGTCTTAATTGCATGTT+TGG - chr8.3:22824019-22824038 MS.gene011671:CDS 35.0%
TACAAATTCAGGCATGTAGT+TGG + chr8.3:22822674-22822693 None:intergenic 35.0%
TGACAATAAAGGATCTCGTA+AGG - chr8.3:22824381-22824400 MS.gene011671:intron 35.0%
TGGAATGCATATGAATCCAT+TGG + chr8.3:22822972-22822991 None:intergenic 35.0%
! CTTCAATTTTCGGAAGTGAT+TGG + chr8.3:22823798-22823817 None:intergenic 35.0%
! GAAACCCTTGCTTCAATTTT+CGG + chr8.3:22823808-22823827 None:intergenic 35.0%
! TGCATTCCAGTTTGATGATA+TGG - chr8.3:22822983-22823002 MS.gene011671:intron 35.0%
!! TTACTCGCTTTGAAACAAGT+TGG + chr8.3:22824081-22824100 None:intergenic 35.0%
!!! ATTAGTACCTTTTTGAGTCC+AGG + chr8.3:22823440-22823459 None:intergenic 35.0%
!!! GACTTGAGTCTTAGTTTTGT+TGG + chr8.3:22823161-22823180 None:intergenic 35.0%
AAATTCAGGCATGTAGTTGG+TGG + chr8.3:22822671-22822690 None:intergenic 40.0%
ACATGATCTTGAGCCTGAAT+AGG + chr8.3:22823353-22823372 None:intergenic 40.0%
AGAAGCCTAAAACTGAGATC+GGG - chr8.3:22823240-22823259 MS.gene011671:CDS 40.0%
AGCAGTTCTACTTTGCCATT+TGG - chr8.3:22823928-22823947 MS.gene011671:CDS 40.0%
ATGTTCACTTTGCATGCAGA+TGG - chr8.3:22823603-22823622 MS.gene011671:intron 40.0%
CACTTCCGAAAATTGAAGCA+AGG - chr8.3:22823800-22823819 MS.gene011671:CDS 40.0%
CATGATCTTGAGCCTGAATA+GGG + chr8.3:22823352-22823371 None:intergenic 40.0%
GAGGAATAAGTACTCTCTTG+TGG + chr8.3:22823035-22823054 None:intergenic 40.0%
GGAATAAGTACTCTCTTGTG+GGG + chr8.3:22823033-22823052 None:intergenic 40.0%
GGCCACAATATTTGTCACAA+TGG + chr8.3:22823855-22823874 None:intergenic 40.0%
GTTGATGTTGTTGGTATGAG+AGG + chr8.3:22823054-22823073 None:intergenic 40.0%
TACTCGGCACAAGAAAAACT+AGG + chr8.3:22824192-22824211 None:intergenic 40.0%
TATGGCAGAAAGAAGACGAA+GGG - chr8.3:22823373-22823392 MS.gene011671:CDS 40.0%
TCAGGCTCAAGATCATGTTA+TGG - chr8.3:22823355-22823374 MS.gene011671:CDS 40.0%
TCTGCATGCAAAGTGAACAT+TGG + chr8.3:22823603-22823622 None:intergenic 40.0%
TCTTCTTCCTGGACTCAAAA+AGG - chr8.3:22823430-22823449 MS.gene011671:CDS 40.0%
TGAACCAAACATGGATGCAA+AGG - chr8.3:22823214-22823233 MS.gene011671:CDS 40.0%
TGACCAGGACTACTTTCAAT+GGG + chr8.3:22823119-22823138 None:intergenic 40.0%
TTATGGCAGAAAGAAGACGA+AGG - chr8.3:22823372-22823391 MS.gene011671:CDS 40.0%
TTCACCTTTGCATCCATGTT+TGG + chr8.3:22823221-22823240 None:intergenic 40.0%
TTGACCAGGACTACTTTCAA+TGG + chr8.3:22823120-22823139 None:intergenic 40.0%
! GATGGACAAGGCAACTATTT+TGG - chr8.3:22823621-22823640 MS.gene011671:intron 40.0%
! TTCGGAAGTGTGATATCTCA+AGG - chr8.3:22823281-22823300 MS.gene011671:CDS 40.0%
!! TCGCTTGTTGTTGATGTTGT+TGG + chr8.3:22823063-22823082 None:intergenic 40.0%
ACTTTGCATGCAGATGGACA+AGG - chr8.3:22823609-22823628 MS.gene011671:intron 45.0%
CCTAAAACTGAGATCGGGTA+TGG - chr8.3:22823245-22823264 MS.gene011671:CDS 45.0%
GACCAGGACTACTTTCAATG+GGG + chr8.3:22823118-22823137 None:intergenic 45.0%
GCTCTTTCATCTCTTCTTCC+TGG - chr8.3:22823419-22823438 MS.gene011671:CDS 45.0%
GGAACGAGTGAAGACTTTAG+AGG - chr8.3:22823675-22823694 MS.gene011671:CDS 45.0%
TGTTCTGTGTGCTTTCGGAA+TGG + chr8.3:22823088-22823107 None:intergenic 45.0%
TTCCCCATTGAAAGTAGTCC+TGG - chr8.3:22823113-22823132 MS.gene011671:CDS 45.0%
! CCATACCCGATCTCAGTTTT+AGG + chr8.3:22823248-22823267 None:intergenic 45.0%
! GGAGCATAAGTCAGGTTTTG+AGG - chr8.3:22824402-22824421 MS.gene011671:CDS 45.0%
! TAGAACTGCTCTGAACAGTG+AGG + chr8.3:22823918-22823937 None:intergenic 45.0%
! TCTCGTAAGGAGCATAAGTC+AGG - chr8.3:22824394-22824413 MS.gene011671:intron 45.0%
CAGCAGCAACCTTGTTCTCT+CGG + chr8.3:22823319-22823338 None:intergenic 50.0%
GCTGAAGCAACAGATTGACC+AGG + chr8.3:22823134-22823153 None:intergenic 50.0%
! TGAGTATTGCGGTCGCAGTT+CGG + chr8.3:22823876-22823895 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 22822652 22824436 22822652 ID=MS.gene011671
chr8.3 mRNA 22822652 22824436 22822652 ID=MS.gene011671.t1;Parent=MS.gene011671
chr8.3 exon 22824398 22824436 22824398 ID=MS.gene011671.t1.exon1;Parent=MS.gene011671.t1
chr8.3 CDS 22824398 22824436 22824398 ID=cds.MS.gene011671.t1;Parent=MS.gene011671.t1
chr8.3 exon 22823637 22824161 22823637 ID=MS.gene011671.t1.exon2;Parent=MS.gene011671.t1
chr8.3 CDS 22823637 22824161 22823637 ID=cds.MS.gene011671.t1;Parent=MS.gene011671.t1
chr8.3 exon 22823104 22823466 22823104 ID=MS.gene011671.t1.exon3;Parent=MS.gene011671.t1
chr8.3 CDS 22823104 22823466 22823104 ID=cds.MS.gene011671.t1;Parent=MS.gene011671.t1
chr8.3 exon 22822652 22822726 22822652 ID=MS.gene011671.t1.exon4;Parent=MS.gene011671.t1
chr8.3 CDS 22822652 22822726 22822652 ID=cds.MS.gene011671.t1;Parent=MS.gene011671.t1
Gene Sequence

>MS.gene011671

ATGATTCAAATTTCGTCCACCAACTACATGCCTGAATTTGTAAGTATACAACATAGTGTATGTTTGGATTTGCAAAGAGATTCGGATAAACAAAATCACTATCATAATGTTGATATAAACTATATTGCTTCAACAAAATCGTAGTGTGACTGTGATTTTGCAAAACTCGCATGTCATACAAACATAACTTAAAGCAAACTAAGCTAACTACAAAAACATCCATACAAAAATTCTAAATTTTATTACTTACCTTTTTTTTTTCTTTGAATTAACAGGGATTAATGGAGGACAATACTTTGTTTAGTGATCATGAATATCCAATGGATTCATATGCATTCCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGCATCCCCACAAGAGAGTACTTATTCCTCTCATACCAACAACATCAACAACAAGCGAATCCATTCCGAAAGCACACAGAACAATTCTTTCCCCATTGAAAGTAGTCCTGGTCAATCTGTTGCTTCAGCTACACCAACAAAACTAAGACTCAAGTCTTCTTCATCTTCATCTTCCAAGATCATTTCTTTTGAACCAAACATGGATGCAAAGGTGAAGAAGCCTAAAACTGAGATCGGGTATGGAGAAAACTTGAATTTCGGAAGTGTGATATCTCAAGGTGATTATTATAACCGAGAGAACAAGGTTGCTGCTGTAAATAGAAACCCTATTCAGGCTCAAGATCATGTTATGGCAGAAAGAAGACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCATCTCTTCTTCCTGGACTCAAAAAGGTACTAATATATTCTAATAAATCTCATGCACATAAATATGCGATCTTTAATGTTGAGAGAAATTACATGCAAATTATGTTAGTATAGTTGCAATTTAGGTCTGCTACCGCAATTGAAAACCATAATATCCTCTATCAAGTAGTATTAACCAATGTTCACTTTGCATGCAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAAACATATGAAGCAACTACAGGAACGAGTGAAGACTTTAGAGGAACAAGTAACCAATAAAAAAGTCGAATCAGCTGTTTTTGTGAAGAGATCTATTCTCTTTGACGAAGATGATAGCTCATCTTGCGACAAAAATTCAGACCAATCACTTCCGAAAATTGAAGCAAGGGTTTCTGGAAAAGACATGCTCATCAGAATCCATTGTGACAAATATTGTGGCCGAACTGCGACCGCAATACTCATCGAATTAGAAAAGCATCACCTCACTGTTCAGAGCAGTTCTACTTTGCCATTTGGAAATAACTATCTTGATATAACAATTGTTGCTCAGGTAAATTTATTCAAATTTGAAGACATGAGTTTATGCTTGTCTTAATTGCATGTTTGGTTCGTTCTTGATGTTTATTTTAAGTTTCTAGTTGGTCCAACTTGTTTCAAAGCGAGTAATGTTTTGGACCAACTTAAAATTTTTAAAACTTAAAGACCAACTTAAAACCTAATTAAAATGATCATAAGAGACCATTTTATGTTCTAGCCTAGTTTTTCTTGTGCCGAGTAGAATTCTTTGTTCATGTTGATATATTCTATTTGGCTCGTTAAAAAAAACATAAGAAATCAAACATGCAATTAAGCCTCTATATTTTATCTCGGAAAAATTAGTGACAGATTTTATTTAATTTTCATGGCTAATTTAATTTTTTCTTGCAGATGAATAAAGAATATTGCTTGACAATAAAGGATCTCGTAAGGAGCATAAGTCAGGTTTTGAGGCAGCTCATTTGA
Protein sequence

>MS.gene011671.t1

MIQISSTNYMPEFGLMEDNTLFSDHEYPMDSYAFQFDDMAYFKSFSASPQESTYSSHTNNINNKRIHSESTQNNSFPIESSPGQSVASATPTKLRLKSSSSSSSKIISFEPNMDAKVKKPKTEIGYGENLNFGSVISQGDYYNRENKVAAVNRNPIQAQDHVMAERRRREKLSQRFIALSSLLPGLKKMDKATILEDAIKHMKQLQERVKTLEEQVTNKKVESAVFVKRSILFDEDDSSSCDKNSDQSLPKIEARVSGKDMLIRIHCDKYCGRTATAILIELEKHHLTVQSSSTLPFGNNYLDITIVAQMNKEYCLTIKDLVRSISQVLRQLI