Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011824.t1 | XP_004509147.1 | 75.3 | 489 | 99 | 6 | 1 | 477 | 1 | 479 | 4.50E-196 | 694.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011824.t1 | Q0JP99 | 32.1 | 452 | 273 | 10 | 39 | 477 | 65 | 495 | 1.2e-51 | 205.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011824.t1 | A0A1S2YSD0 | 75.3 | 489 | 99 | 6 | 1 | 477 | 1 | 479 | 3.2e-196 | 694.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011824.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011824.t1 | MTR_2g102450 | 47.093 | 172 | 85 | 5 | 109 | 277 | 74 | 242 | 2.99e-37 | 140 |
| MS.gene011824.t1 | MTR_2g102450 | 47.093 | 172 | 85 | 5 | 109 | 277 | 128 | 296 | 8.74e-37 | 140 |
| MS.gene011824.t1 | MTR_3g101520 | 48.800 | 125 | 64 | 0 | 95 | 219 | 98 | 222 | 3.61e-36 | 133 |
| MS.gene011824.t1 | MTR_3g101520 | 48.800 | 125 | 64 | 0 | 95 | 219 | 106 | 230 | 6.27e-36 | 133 |
| MS.gene011824.t1 | MTR_4g008310 | 46.226 | 106 | 57 | 0 | 105 | 210 | 199 | 304 | 1.58e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011824.t1 | AT3G19184 | 51.282 | 117 | 57 | 0 | 96 | 212 | 103 | 219 | 6.72e-35 | 132 |
| MS.gene011824.t1 | AT3G19184 | 51.282 | 117 | 57 | 0 | 96 | 212 | 103 | 219 | 7.39e-35 | 132 |
| MS.gene011824.t1 | AT5G42700 | 52.586 | 116 | 51 | 1 | 98 | 213 | 64 | 175 | 9.03e-33 | 123 |
| MS.gene011824.t1 | AT5G42700 | 52.586 | 116 | 51 | 1 | 98 | 213 | 109 | 220 | 1.41e-32 | 124 |
| MS.gene011824.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 109 | 227 | 113 | 230 | 1.30e-25 | 106 |
| MS.gene011824.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 109 | 227 | 146 | 263 | 2.66e-25 | 106 |
| MS.gene011824.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 109 | 227 | 145 | 262 | 2.67e-25 | 106 |
Find 66 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAACCCACCAAATTTA+AGG | 0.130382 | 8.1:-27209210 | MS.gene011824:intron |
| CCTGAATTTAAAGAGTTAAA+AGG | 0.230186 | 8.1:-27208710 | MS.gene011824:CDS |
| TTGTTAATTAATGTCGAAAA+TGG | 0.247163 | 8.1:-27210953 | None:intergenic |
| TTCACAAAACTAGGGAATTC+TGG | 0.261063 | 8.1:+27209727 | None:intergenic |
| AGATAGAAAACAACATTTAA+AGG | 0.273772 | 8.1:+27210784 | None:intergenic |
| AGAAAGAAGTTGCTGCTAAT+TGG | 0.286931 | 8.1:-27208181 | MS.gene011824:CDS |
| GTGATAGTTGTATCTTTATC+AGG | 0.288491 | 8.1:+27209362 | None:intergenic |
| CTCAGAGATTAGAAGATATA+TGG | 0.350074 | 8.1:-27208351 | MS.gene011824:CDS |
| ATTTGGTGGGTTCAATTAGT+TGG | 0.352601 | 8.1:+27209216 | None:intergenic |
| GTTAGCATAGCTTATGAAAC+TGG | 0.370804 | 8.1:-27208380 | MS.gene011824:CDS |
| ACAACATTTAAAGGAGACTT+TGG | 0.371950 | 8.1:+27210793 | None:intergenic |
| AATTTCAGAATCATAGTTGA+TGG | 0.381163 | 8.1:-27208680 | MS.gene011824:CDS |
| TTATGGGAGAGAGGTGTATG+AGG | 0.397309 | 8.1:-27210839 | MS.gene011824:CDS |
| TTGATTGCAGTTCAACTAAA+GGG | 0.407390 | 8.1:-27209822 | MS.gene011824:intron |
| AACTATTACCTTAAATTTGG+TGG | 0.415378 | 8.1:+27209202 | None:intergenic |
| ATCACATTAGAAGATGAATA+TGG | 0.425783 | 8.1:-27209344 | MS.gene011824:CDS |
| TTTGATTGCAGTTCAACTAA+AGG | 0.434875 | 8.1:-27209823 | MS.gene011824:intron |
| TGAAGGACTCCGATCACATT+TGG | 0.435239 | 8.1:-27209752 | MS.gene011824:CDS |
| ACTAAGCCTAAGCAATATAC+AGG | 0.437303 | 8.1:-27208791 | MS.gene011824:CDS |
| TTGCATTACAAGCTGACTGC+TGG | 0.442933 | 8.1:-27208557 | MS.gene011824:CDS |
| GTAGAGAGTTCTTCTTCGAT+TGG | 0.457108 | 8.1:+27208653 | None:intergenic |
| AACGAAGCTTGAAGAATTGA+AGG | 0.472041 | 8.1:-27208276 | MS.gene011824:CDS |
| CTTCATGACAATCTCATCAA+AGG | 0.474595 | 8.1:-27208581 | MS.gene011824:CDS |
| GGTGTATGAGGGTGTTCCTA+TGG | 0.476105 | 8.1:-27210827 | MS.gene011824:CDS |
| CTGTTACATGCTACAACATC+AGG | 0.478138 | 8.1:+27208890 | None:intergenic |
| GACTGCCCTGTATATTGCTT+AGG | 0.485313 | 8.1:+27208785 | None:intergenic |
| CACAATCACAAAAGTTTGCA+AGG | 0.496554 | 8.1:-27209932 | MS.gene011824:intron |
| ACCGTGTTGTTCAGTTCTAT+AGG | 0.503974 | 8.1:+27208328 | None:intergenic |
| ACTATTACCTTAAATTTGGT+GGG | 0.516282 | 8.1:+27209203 | None:intergenic |
| TTTCCACGAAATGATGATCA+TGG | 0.525235 | 8.1:-27210877 | MS.gene011824:CDS |
| AGCAAGGACTTCACAAAACT+AGG | 0.525979 | 8.1:+27209718 | None:intergenic |
| AAATACATTGCATGTAAGAC+AGG | 0.526557 | 8.1:-27209305 | MS.gene011824:CDS |
| TATGGGAGAGAGGTGTATGA+GGG | 0.546719 | 8.1:-27210838 | MS.gene011824:CDS |
| AGCTTTGTCAGAAATATTCG+AGG | 0.558647 | 8.1:-27208744 | MS.gene011824:CDS |
| ATTAATGTCGAAAATGGTGG+CGG | 0.572487 | 8.1:-27210947 | None:intergenic |
| GCAAGGACTTCACAAAACTA+GGG | 0.574234 | 8.1:+27209719 | None:intergenic |
| TTAATTAATGTCGAAAATGG+TGG | 0.576665 | 8.1:-27210950 | None:intergenic |
| TCAGCTGTGATTCACGCTGA+AGG | 0.576667 | 8.1:-27209769 | MS.gene011824:CDS |
| AGAGGATGAAATAAAGAACA+TGG | 0.576688 | 8.1:-27208300 | MS.gene011824:CDS |
| TCAGAATCATAGTTGATGGA+AGG | 0.576785 | 8.1:-27208676 | MS.gene011824:CDS |
| GTATAAACAAAACAAGGCGG+TGG | 0.581891 | 8.1:-27210541 | MS.gene011824:CDS |
| TGGCGGTTGATGAAAAGAAG+AGG | 0.598421 | 8.1:-27210930 | MS.gene011824:CDS |
| ACTCCATGATCATCATTTCG+TGG | 0.602909 | 8.1:+27210874 | None:intergenic |
| TGATTGCAGTTCAACTAAAG+GGG | 0.603602 | 8.1:-27209821 | MS.gene011824:intron |
| TTTGGAGAGAAATGTGCCAT+AGG | 0.605853 | 8.1:+27210811 | None:intergenic |
| TGAAAAGAAGAGGGATCGAA+TGG | 0.606536 | 8.1:-27210920 | MS.gene011824:CDS |
| GAAAATGATTGTATCAAACA+TGG | 0.606925 | 8.1:-27208816 | MS.gene011824:CDS |
| GCTTTGTCAGAAATATTCGA+GGG | 0.608274 | 8.1:-27208743 | MS.gene011824:CDS |
| TGAACAACACGGTCGAGTAG+AGG | 0.611549 | 8.1:-27208318 | MS.gene011824:CDS |
| ATTCTGGTTCCAAATGTGAT+CGG | 0.620705 | 8.1:+27209743 | None:intergenic |
| GATTGCAGTTCAACTAAAGG+GGG | 0.621159 | 8.1:-27209820 | MS.gene011824:intron |
| AGCTACATGTGATCTGAGCA+AGG | 0.622819 | 8.1:+27209702 | None:intergenic |
| GGCGGTTGATGAAAAGAAGA+GGG | 0.624988 | 8.1:-27210929 | MS.gene011824:CDS |
| TTAGGTTTATATAATAAGAG+CGG | 0.625618 | 8.1:-27209104 | MS.gene011824:intron |
| GCTGTGCATAAATTGCTAGA+AGG | 0.629013 | 8.1:-27209254 | MS.gene011824:CDS |
| AGACAGGATTGAGTGCTGGT+TGG | 0.629436 | 8.1:-27209289 | MS.gene011824:CDS |
| TGTAAGACAGGATTGAGTGC+TGG | 0.630499 | 8.1:-27209293 | MS.gene011824:CDS |
| TTTGCAGTATAAACAAAACA+AGG | 0.643541 | 8.1:-27210547 | MS.gene011824:intron |
| CATATATCTTCTAATCTCTG+AGG | 0.654771 | 8.1:+27208352 | None:intergenic |
| CAATTAGAAAATTCAACACG+CGG | 0.655244 | 8.1:+27208476 | None:intergenic |
| GAATTGAAGGAAGCTTGTAG+CGG | 0.658226 | 8.1:-27208263 | MS.gene011824:CDS |
| GGGAACATATTCTCGTGGCG+AGG | 0.659835 | 8.1:-27209800 | MS.gene011824:CDS |
| CTAAGCCTAAGCAATATACA+GGG | 0.663691 | 8.1:-27208790 | MS.gene011824:CDS |
| TAAATTGCTAGAAGGTGATG+TGG | 0.688108 | 8.1:-27209246 | MS.gene011824:CDS |
| GCCTATAGAACTGAACAACA+CGG | 0.716910 | 8.1:-27208329 | MS.gene011824:CDS |
| GCAGTATAAACAAAACAAGG+CGG | 0.774088 | 8.1:-27210544 | MS.gene011824:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATAAACCTAAAAAAAA+AGG | + | chr8.1:27210011-27210030 | None:intergenic | 10.0% |
| !! | AAAAAAAATGTAAAATGGAT+TGG | + | chr8.1:27208912-27208931 | None:intergenic | 15.0% |
| !! | AAAAACTATTACCTTAAATT+TGG | + | chr8.1:27209925-27209944 | None:intergenic | 15.0% |
| !! | AAATTAAATCAAAGTCAAAA+TGG | - | chr8.1:27209119-27209138 | MS.gene011824:intron | 15.0% |
| !! | AATACAACAAATTAAAAGTA+TGG | + | chr8.1:27210100-27210119 | None:intergenic | 15.0% |
| !! | ACAATAATTTATACTAAACA+AGG | - | chr8.1:27208781-27208800 | MS.gene011824:CDS | 15.0% |
| !! | AGAATTTAACATTCAATTAA+TGG | + | chr8.1:27209095-27209114 | None:intergenic | 15.0% |
| !! | CATGTAAAAAAAATGTAAAA+TGG | + | chr8.1:27208917-27208936 | None:intergenic | 15.0% |
| !! | GAATTTAACATTCAATTAAT+GGG | + | chr8.1:27209094-27209113 | None:intergenic | 15.0% |
| !! | TTAGTTATATTCAAATTTAG+AGG | + | chr8.1:27209493-27209512 | None:intergenic | 15.0% |
| !!! | AAAAAAATGTAAAATGGATT+GGG | + | chr8.1:27208911-27208930 | None:intergenic | 15.0% |
| !!! | ATTTTAATTGTCATTTTATC+AGG | + | chr8.1:27209537-27209556 | None:intergenic | 15.0% |
| !!! | ATTTTTATTGATAATGTTTC+TGG | - | chr8.1:27208477-27208496 | MS.gene011824:CDS | 15.0% |
| !!! | TACTTACTTTAAAAATAAGT+TGG | + | chr8.1:27209249-27209268 | None:intergenic | 15.0% |
| !!! | TATTTGGTTTATCTTTTTTT+TGG | + | chr8.1:27209672-27209691 | None:intergenic | 15.0% |
| !!! | TCTTTTGTTAGTTTTAATTT+TGG | - | chr8.1:27209972-27209991 | MS.gene011824:intron | 15.0% |
| !!! | TGTAAATATTGAAAACATTT+TGG | - | chr8.1:27208958-27208977 | MS.gene011824:intron | 15.0% |
| !! | AGATAGAAAACAACATTTAA+AGG | + | chr8.1:27208340-27208359 | None:intergenic | 20.0% |
| !! | TTAGGTTTATATAATAAGAG+CGG | - | chr8.1:27210017-27210036 | MS.gene011824:intron | 20.0% |
| !!! | AAAAAATGTAAAATGGATTG+GGG | + | chr8.1:27208910-27208929 | None:intergenic | 20.0% |
| !!! | AAAACAAGTAAGATTTTGAA+GGG | - | chr8.1:27208634-27208653 | MS.gene011824:CDS | 20.0% |
| !!! | ATACATTTTGTGAAAAAATG+AGG | + | chr8.1:27208378-27208397 | None:intergenic | 20.0% |
| !!! | CAATCATTTTCTTTTTCTTT+TGG | + | chr8.1:27210296-27210315 | None:intergenic | 20.0% |
| !!! | TAATTTTAATAGCATTGTAG+CGG | + | chr8.1:27208754-27208773 | None:intergenic | 20.0% |
| !!! | TTGTGATTTCTTTTTGTATA+GGG | - | chr8.1:27209705-27209724 | MS.gene011824:CDS | 20.0% |
| !!! | TTTTACATGTATTGAAACAT+TGG | - | chr8.1:27208928-27208947 | MS.gene011824:intron | 20.0% |
| ! | AACCAAACAATTAGATGAAA+GGG | + | chr8.1:27209013-27209032 | None:intergenic | 25.0% |
| ! | AACTATTACCTTAAATTTGG+TGG | + | chr8.1:27209922-27209941 | None:intergenic | 25.0% |
| ! | AATTTCAGAATCATAGTTGA+TGG | - | chr8.1:27210441-27210460 | MS.gene011824:intron | 25.0% |
| ! | ACTATTACCTTAAATTTGGT+GGG | + | chr8.1:27209921-27209940 | None:intergenic | 25.0% |
| ! | ATAAAGAGAAATGTGTTTGA+TGG | - | chr8.1:27208441-27208460 | MS.gene011824:CDS | 25.0% |
| ! | ATCACATTAGAAGATGAATA+TGG | - | chr8.1:27209777-27209796 | MS.gene011824:CDS | 25.0% |
| ! | CCTGAATTTAAAGAGTTAAA+AGG | - | chr8.1:27210411-27210430 | MS.gene011824:intron | 25.0% |
| ! | GAAAATGATTGTATCAAACA+TGG | - | chr8.1:27210305-27210324 | MS.gene011824:intron | 25.0% |
| ! | TAAAATGAAGCAACTGTATT+AGG | - | chr8.1:27209551-27209570 | MS.gene011824:intron | 25.0% |
| ! | TAAAGAGAAATGTGTTTGAT+GGG | - | chr8.1:27208442-27208461 | MS.gene011824:CDS | 25.0% |
| ! | TTTGCAGTATAAACAAAACA+AGG | - | chr8.1:27208574-27208593 | MS.gene011824:CDS | 25.0% |
| !! | CAAAACAAGTAAGATTTTGA+AGG | - | chr8.1:27208633-27208652 | MS.gene011824:CDS | 25.0% |
| !! | CTTGTGATTTCTTTTTGTAT+AGG | - | chr8.1:27209704-27209723 | MS.gene011824:CDS | 25.0% |
| !! | TGTGATTTCTTTTTGTATAG+GGG | - | chr8.1:27209706-27209725 | MS.gene011824:CDS | 25.0% |
| !! | TTAACATATGCATTTTCTAC+AGG | - | chr8.1:27209151-27209170 | MS.gene011824:intron | 25.0% |
| !!! | CAAAATCTTACTTGTTTTGT+TGG | + | chr8.1:27208632-27208651 | None:intergenic | 25.0% |
| !!! | CCTTTTAACTCTTTAAATTC+AGG | + | chr8.1:27210414-27210433 | None:intergenic | 25.0% |
| !!! | GTTTAACGCTTTTTCTTTTT+GGG | + | chr8.1:27210257-27210276 | None:intergenic | 25.0% |
| !!! | TTACTCGTACCTTTTTTTTT+AGG | - | chr8.1:27209999-27210018 | MS.gene011824:intron | 25.0% |
| !!! | TTGGTTTATCTTTTTTTTGG+TGG | + | chr8.1:27209669-27209688 | None:intergenic | 25.0% |
| AAATACATTGCATGTAAGAC+AGG | - | chr8.1:27209816-27209835 | MS.gene011824:intron | 30.0% | |
| AATGGTGAAAAAAGATGTGA+TGG | - | chr8.1:27208219-27208238 | MS.gene011824:CDS | 30.0% | |
| AATTGAACCCACCAAATTTA+AGG | - | chr8.1:27209911-27209930 | MS.gene011824:intron | 30.0% | |
| ACAACATTTAAAGGAGACTT+TGG | + | chr8.1:27208331-27208350 | None:intergenic | 30.0% | |
| AGAGGATGAAATAAAGAACA+TGG | - | chr8.1:27210821-27210840 | MS.gene011824:CDS | 30.0% | |
| CAAAAAGAAATCACAAGACA+TGG | + | chr8.1:27209701-27209720 | None:intergenic | 30.0% | |
| CAACCAAACAATTAGATGAA+AGG | + | chr8.1:27209014-27209033 | None:intergenic | 30.0% | |
| CAATTAGAAAATTCAACACG+CGG | + | chr8.1:27210648-27210667 | None:intergenic | 30.0% | |
| CATAATATATGCAAGGTCTA+GGG | - | chr8.1:27209629-27209648 | MS.gene011824:intron | 30.0% | |
| CATATATCTTCTAATCTCTG+AGG | + | chr8.1:27210772-27210791 | None:intergenic | 30.0% | |
| CATGGAAGGTTAAAATTATG+TGG | + | chr8.1:27208985-27209004 | None:intergenic | 30.0% | |
| CTCAGAGATTAGAAGATATA+TGG | - | chr8.1:27210770-27210789 | MS.gene011824:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr8.1:27209622-27209641 | MS.gene011824:intron | 30.0% | |
| GTGATAGTTGTATCTTTATC+AGG | + | chr8.1:27209762-27209781 | None:intergenic | 30.0% | |
| TGTCTATCATGAAATCATCA+AGG | - | chr8.1:27210122-27210141 | MS.gene011824:intron | 30.0% | |
| TTGATTGCAGTTCAACTAAA+GGG | - | chr8.1:27209299-27209318 | MS.gene011824:CDS | 30.0% | |
| TTTGATTGCAGTTCAACTAA+AGG | - | chr8.1:27209298-27209317 | MS.gene011824:CDS | 30.0% | |
| ! | GCGTGTTGAATTTTCTAATT+GGG | - | chr8.1:27210647-27210666 | MS.gene011824:intron | 30.0% |
| ! | TTTTTCTCCTTCATGTTTTC+AGG | - | chr8.1:27210192-27210211 | MS.gene011824:intron | 30.0% |
| ! | TTTTTCTTTTGGATGTCTTG+TGG | + | chr8.1:27210285-27210304 | None:intergenic | 30.0% |
| !!! | ATTGCTAGCTTTTGAACATT+TGG | - | chr8.1:27210677-27210696 | MS.gene011824:intron | 30.0% |
| !!! | GGTTTAACGCTTTTTCTTTT+TGG | + | chr8.1:27210258-27210277 | None:intergenic | 30.0% |
| !!! | GTTTATCTTTTTTTTGGTGG+TGG | + | chr8.1:27209666-27209685 | None:intergenic | 30.0% |
| !!! | TTGCTAGCTTTTGAACATTT+GGG | - | chr8.1:27210678-27210697 | MS.gene011824:intron | 30.0% |
| AAAGAAATCACAAGACATGG+TGG | + | chr8.1:27209698-27209717 | None:intergenic | 35.0% | |
| AACGAAGCTTGAAGAATTGA+AGG | - | chr8.1:27210845-27210864 | MS.gene011824:CDS | 35.0% | |
| ACTAAGCCTAAGCAATATAC+AGG | - | chr8.1:27210330-27210349 | MS.gene011824:intron | 35.0% | |
| AGAAAGAAGTTGCTGCTAAT+TGG | - | chr8.1:27210940-27210959 | MS.gene011824:CDS | 35.0% | |
| AGTTGCACCAAACAAAAAGT+GGG | - | chr8.1:27210057-27210076 | MS.gene011824:intron | 35.0% | |
| ATCACAAAAGTTTGCAAGGT+TGG | - | chr8.1:27209193-27209212 | MS.gene011824:intron | 35.0% | |
| ATCCAGATTGTGAATAACAG+AGG | - | chr8.1:27208703-27208722 | MS.gene011824:CDS | 35.0% | |
| CAAAAAGAAGCCAAACCTAT+AGG | + | chr8.1:27208512-27208531 | None:intergenic | 35.0% | |
| CACAATCACAAAAGTTTGCA+AGG | - | chr8.1:27209189-27209208 | MS.gene011824:intron | 35.0% | |
| CACCCTTTCATCTAATTGTT+TGG | - | chr8.1:27209008-27209027 | MS.gene011824:intron | 35.0% | |
| CTAAGCCTAAGCAATATACA+GGG | - | chr8.1:27210331-27210350 | MS.gene011824:intron | 35.0% | |
| CTTCATGACAATCTCATCAA+AGG | - | chr8.1:27210540-27210559 | MS.gene011824:CDS | 35.0% | |
| GCAGTATAAACAAAACAAGG+CGG | - | chr8.1:27208577-27208596 | MS.gene011824:CDS | 35.0% | |
| GCATAATATATGCAAGGTCT+AGG | - | chr8.1:27209628-27209647 | MS.gene011824:intron | 35.0% | |
| GCTTAAGATTCCTATAGGTT+TGG | - | chr8.1:27208499-27208518 | MS.gene011824:CDS | 35.0% | |
| GCTTTGTCAGAAATATTCGA+GGG | - | chr8.1:27210378-27210397 | MS.gene011824:intron | 35.0% | |
| GTTAGCATAGCTTATGAAAC+TGG | - | chr8.1:27210741-27210760 | MS.gene011824:intron | 35.0% | |
| GTTTCTTCCTGAAAACATGA+AGG | + | chr8.1:27210202-27210221 | None:intergenic | 35.0% | |
| TAAATTGCTAGAAGGTGATG+TGG | - | chr8.1:27209875-27209894 | MS.gene011824:intron | 35.0% | |
| TGATTGCAGTTCAACTAAAG+GGG | - | chr8.1:27209300-27209319 | MS.gene011824:CDS | 35.0% | |
| TTCACAAAACTAGGGAATTC+TGG | + | chr8.1:27209397-27209416 | None:intergenic | 35.0% | |
| TTTCCACGAAATGATGATCA+TGG | - | chr8.1:27208244-27208263 | MS.gene011824:CDS | 35.0% | |
| ! | AGCTTTGTCAGAAATATTCG+AGG | - | chr8.1:27210377-27210396 | MS.gene011824:intron | 35.0% |
| ! | AGGCTTGTTTAAATCCCAAT+AGG | - | chr8.1:27208723-27208742 | MS.gene011824:CDS | 35.0% |
| ! | CGCGTGTTGAATTTTCTAAT+TGG | - | chr8.1:27210646-27210665 | MS.gene011824:intron | 35.0% |
| ! | GAGTGACTGTTGCATTTTAT+GGG | - | chr8.1:27208266-27208285 | MS.gene011824:CDS | 35.0% |
| ! | TAAGCTTGTAAAGCACTACA+AGG | + | chr8.1:27209069-27209088 | None:intergenic | 35.0% |
| ! | TGTCTTTTACAAAACGACAC+AGG | + | chr8.1:27209735-27209754 | None:intergenic | 35.0% |
| !! | AAATGTAAAATGGATTGGGG+TGG | + | chr8.1:27208907-27208926 | None:intergenic | 35.0% |
| !! | AATGTAAAATGGATTGGGGT+GGG | + | chr8.1:27208906-27208925 | None:intergenic | 35.0% |
| !! | ATTCTGGTTCCAAATGTGAT+CGG | + | chr8.1:27209381-27209400 | None:intergenic | 35.0% |
| !! | ATTTGGTGGGTTCAATTAGT+TGG | + | chr8.1:27209908-27209927 | None:intergenic | 35.0% |
| !! | CACATGTAGCTAGTTGTTTT+TGG | - | chr8.1:27209431-27209450 | MS.gene011824:intron | 35.0% |
| !! | CTATAGGTTTGGCTTCTTTT+TGG | - | chr8.1:27208510-27208529 | MS.gene011824:CDS | 35.0% |
| !! | TCAGAATCATAGTTGATGGA+AGG | - | chr8.1:27210445-27210464 | MS.gene011824:intron | 35.0% |
| !! | TTAGATGAAAGGGTGTTTCA+TGG | + | chr8.1:27209003-27209022 | None:intergenic | 35.0% |
| !! | TTCTGGCTTAAGATTCCTAT+AGG | - | chr8.1:27208494-27208513 | MS.gene011824:CDS | 35.0% |
| !!! | TGTAGCTAGTTGTTTTTGGA+TGG | - | chr8.1:27209435-27209454 | MS.gene011824:intron | 35.0% |
| AAGCTCACGAGGACATTATT+TGG | + | chr8.1:27209587-27209606 | None:intergenic | 40.0% | |
| ACTCCATGATCATCATTTCG+TGG | + | chr8.1:27208250-27208269 | None:intergenic | 40.0% | |
| AGCAAGGACTTCACAAAACT+AGG | + | chr8.1:27209406-27209425 | None:intergenic | 40.0% | |
| AGCCTCTGTTATTCACAATC+TGG | + | chr8.1:27208708-27208727 | None:intergenic | 40.0% | |
| CAACCAGTGTTGTCAACTAT+CGG | + | chr8.1:27208871-27208890 | None:intergenic | 40.0% | |
| CTGTTACATGCTACAACATC+AGG | + | chr8.1:27210234-27210253 | None:intergenic | 40.0% | |
| GAATTGAAGGAAGCTTGTAG+CGG | - | chr8.1:27210858-27210877 | MS.gene011824:CDS | 40.0% | |
| GAGTTGCACCAAACAAAAAG+TGG | - | chr8.1:27210056-27210075 | MS.gene011824:intron | 40.0% | |
| GATTGCAGTTCAACTAAAGG+GGG | - | chr8.1:27209301-27209320 | MS.gene011824:CDS | 40.0% | |
| GCAAGGACTTCACAAAACTA+GGG | + | chr8.1:27209405-27209424 | None:intergenic | 40.0% | |
| GCCTATAGAACTGAACAACA+CGG | - | chr8.1:27210792-27210811 | MS.gene011824:intron | 40.0% | |
| GCTGTGCATAAATTGCTAGA+AGG | - | chr8.1:27209867-27209886 | MS.gene011824:intron | 40.0% | |
| GTAGAGAGTTCTTCTTCGAT+TGG | + | chr8.1:27210471-27210490 | None:intergenic | 40.0% | |
| GTATAAACAAAACAAGGCGG+TGG | - | chr8.1:27208580-27208599 | MS.gene011824:CDS | 40.0% | |
| TGAAAAGAAGAGGGATCGAA+TGG | - | chr8.1:27208201-27208220 | MS.gene011824:CDS | 40.0% | |
| TTTGGAGAGAAATGTGCCAT+AGG | + | chr8.1:27208313-27208332 | None:intergenic | 40.0% | |
| ! | ACCGTGTTGTTCAGTTCTAT+AGG | + | chr8.1:27210796-27210815 | None:intergenic | 40.0% |
| ! | ATTGTAGCGGAGTAACCTAT+TGG | + | chr8.1:27208741-27208760 | None:intergenic | 40.0% |
| ! | GGAGTGACTGTTGCATTTTA+TGG | - | chr8.1:27208265-27208284 | MS.gene011824:CDS | 40.0% |
| ! | TGTTGCATTTTATGGGAGAG+AGG | - | chr8.1:27208273-27208292 | MS.gene011824:CDS | 40.0% |
| ! | TTGTAGCGGAGTAACCTATT+GGG | + | chr8.1:27208740-27208759 | None:intergenic | 40.0% |
| ! | TTTTGGATGTCTTGTGGAAC+AGG | + | chr8.1:27210279-27210298 | None:intergenic | 40.0% |
| !! | ATGAAAGGGTGTTTCATGGA+AGG | + | chr8.1:27208999-27209018 | None:intergenic | 40.0% |
| !! | CAAGACATGGTGGTGTTATT+TGG | + | chr8.1:27209688-27209707 | None:intergenic | 40.0% |
| !! | TTTTAAGAGTTCGATTGCGC+AGG | - | chr8.1:27210715-27210734 | MS.gene011824:intron | 40.0% |
| !!! | ATCTTTTTTTTGGTGGTGGC+CGG | + | chr8.1:27209662-27209681 | None:intergenic | 40.0% |
| AAAGGGGGAACATATTCTCG+TGG | - | chr8.1:27209316-27209335 | MS.gene011824:CDS | 45.0% | |
| AGCTACATGTGATCTGAGCA+AGG | + | chr8.1:27209422-27209441 | None:intergenic | 45.0% | |
| GACTGCCCTGTATATTGCTT+AGG | + | chr8.1:27210339-27210358 | None:intergenic | 45.0% | |
| TAGCCGATAGTTGACAACAC+TGG | - | chr8.1:27208865-27208884 | MS.gene011824:CDS | 45.0% | |
| TGAAGGACTCCGATCACATT+TGG | - | chr8.1:27209369-27209388 | MS.gene011824:CDS | 45.0% | |
| TGCACCAAACAAAAAGTGGG+AGG | - | chr8.1:27210060-27210079 | MS.gene011824:intron | 45.0% | |
| TGTAAGACAGGATTGAGTGC+TGG | - | chr8.1:27209828-27209847 | MS.gene011824:intron | 45.0% | |
| TTGCATTACAAGCTGACTGC+TGG | - | chr8.1:27210564-27210583 | MS.gene011824:intron | 45.0% | |
| ! | GCTTGTAAAGCACTACAAGG+TGG | + | chr8.1:27209066-27209085 | None:intergenic | 45.0% |
| ! | TATGGGAGAGAGGTGTATGA+GGG | - | chr8.1:27208283-27208302 | MS.gene011824:CDS | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr8.1:27209600-27209619 | MS.gene011824:intron | 45.0% |
| ! | TTATGGGAGAGAGGTGTATG+AGG | - | chr8.1:27208282-27208301 | MS.gene011824:CDS | 45.0% |
| !! | GGCGGTTGATGAAAAGAAGA+GGG | - | chr8.1:27208192-27208211 | MS.gene011824:CDS | 45.0% |
| !! | TGGCGGTTGATGAAAAGAAG+AGG | - | chr8.1:27208191-27208210 | MS.gene011824:CDS | 45.0% |
| !!! | CTTGCCTCCCACTTTTTGTT+TGG | + | chr8.1:27210067-27210086 | None:intergenic | 45.0% |
| !!! | TCTTTTTTTTGGTGGTGGCC+GGG | + | chr8.1:27209661-27209680 | None:intergenic | 45.0% |
| TCAGCTGTGATTCACGCTGA+AGG | - | chr8.1:27209352-27209371 | MS.gene011824:CDS | 50.0% | |
| TGAACAACACGGTCGAGTAG+AGG | - | chr8.1:27210803-27210822 | MS.gene011824:CDS | 50.0% | |
| ! | CAAGGTCTAGGGTTCAAACC+CGG | - | chr8.1:27209640-27209659 | MS.gene011824:intron | 50.0% |
| !! | AGACAGGATTGAGTGCTGGT+TGG | - | chr8.1:27209832-27209851 | MS.gene011824:intron | 50.0% |
| !! | GGTGTATGAGGGTGTTCCTA+TGG | - | chr8.1:27208294-27208313 | MS.gene011824:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr8.1:27209598-27209617 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr8.1:27209595-27209614 | MS.gene011824:intron | 55.0% | |
| GGGAACATATTCTCGTGGCG+AGG | - | chr8.1:27209321-27209340 | MS.gene011824:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 27208178 | 27210965 | 27208178 | ID=MS.gene011824 |
| chr8.1 | mRNA | 27208178 | 27210965 | 27208178 | ID=MS.gene011824.t1;Parent=MS.gene011824 |
| chr8.1 | exon | 27210798 | 27210965 | 27210798 | ID=MS.gene011824.t1.exon1;Parent=MS.gene011824.t1 |
| chr8.1 | CDS | 27210798 | 27210965 | 27210798 | ID=cds.MS.gene011824.t1;Parent=MS.gene011824.t1 |
| chr8.1 | exon | 27210503 | 27210562 | 27210503 | ID=MS.gene011824.t1.exon2;Parent=MS.gene011824.t1 |
| chr8.1 | CDS | 27210503 | 27210562 | 27210503 | ID=cds.MS.gene011824.t1;Parent=MS.gene011824.t1 |
| chr8.1 | exon | 27209933 | 27209970 | 27209933 | ID=MS.gene011824.t1.exon3;Parent=MS.gene011824.t1 |
| chr8.1 | CDS | 27209933 | 27209970 | 27209933 | ID=cds.MS.gene011824.t1;Parent=MS.gene011824.t1 |
| chr8.1 | exon | 27209687 | 27209834 | 27209687 | ID=MS.gene011824.t1.exon4;Parent=MS.gene011824.t1 |
| chr8.1 | CDS | 27209687 | 27209834 | 27209687 | ID=cds.MS.gene011824.t1;Parent=MS.gene011824.t1 |
| chr8.1 | exon | 27209211 | 27209417 | 27209211 | ID=MS.gene011824.t1.exon5;Parent=MS.gene011824.t1 |
| chr8.1 | CDS | 27209211 | 27209417 | 27209211 | ID=cds.MS.gene011824.t1;Parent=MS.gene011824.t1 |
| chr8.1 | exon | 27209062 | 27209122 | 27209062 | ID=MS.gene011824.t1.exon6;Parent=MS.gene011824.t1 |
| chr8.1 | CDS | 27209062 | 27209122 | 27209062 | ID=cds.MS.gene011824.t1;Parent=MS.gene011824.t1 |
| chr8.1 | exon | 27208178 | 27208929 | 27208178 | ID=MS.gene011824.t1.exon7;Parent=MS.gene011824.t1 |
| chr8.1 | CDS | 27208178 | 27208929 | 27208178 | ID=cds.MS.gene011824.t1;Parent=MS.gene011824.t1 |
| Gene Sequence |
| Protein sequence |
