AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011857

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011857.t1 MTR_8g079660 86.364 264 36 0 6 269 1 264 1.65e-160 446
MS.gene011857.t1 MTR_8g079620 68.421 266 47 2 6 271 1 229 8.91e-123 350
MS.gene011857.t1 MTR_8g079580 51.445 173 78 3 6 176 1 169 1.45e-49 163
MS.gene011857.t1 MTR_3g073690 50.909 110 54 0 13 122 9 118 1.01e-34 124
MS.gene011857.t1 MTR_5g017950 51.351 111 54 0 13 123 8 118 1.04e-34 127
MS.gene011857.t1 MTR_3g452660 50.435 115 56 1 13 126 7 121 4.15e-33 122
MS.gene011857.t1 MTR_2g093310 46.226 106 57 0 8 113 28 133 7.77e-29 108
MS.gene011857.t1 MTR_6g005080 44.231 104 58 0 13 116 10 113 8.25e-29 107
MS.gene011857.t1 MTR_4g105170 45.192 104 57 0 13 116 11 114 1.58e-28 107
MS.gene011857.t1 MTR_2g068760 45.192 104 57 0 10 113 10 113 8.84e-28 105
MS.gene011857.t1 MTR_7g033800 43.396 106 60 0 13 118 11 116 1.26e-27 105
MS.gene011857.t1 MTR_3g077240 45.192 104 57 0 13 116 10 113 1.40e-27 105
MS.gene011857.t1 MTR_8g040900 44.348 115 64 0 13 127 7 121 4.82e-27 105
MS.gene011857.t1 MTR_4g083680 41.129 124 70 1 13 136 15 135 6.79e-27 103
MS.gene011857.t1 MTR_6g005070 44.660 103 57 0 13 115 9 111 9.51e-27 102
MS.gene011857.t1 MTR_4g060950 42.149 121 68 2 9 128 20 139 9.80e-27 103
MS.gene011857.t1 MTR_3g031660 43.564 101 57 0 13 113 7 107 1.78e-26 102
MS.gene011857.t1 MTR_5g083230 45.545 101 55 0 13 113 6 106 2.76e-26 101
MS.gene011857.t1 MTR_5g083960 44.231 104 58 0 13 116 39 142 6.20e-26 101
MS.gene011857.t1 MTR_3g094690 45.283 106 58 0 11 116 45 150 8.50e-26 102
MS.gene011857.t1 MTR_3g071590 44.554 101 56 0 13 113 8 108 2.15e-25 99.0
MS.gene011857.t1 MTR_3g094690 46.226 106 56 1 11 116 45 149 5.85e-25 99.8
MS.gene011857.t1 MTR_1g095850 46.000 100 54 0 14 113 73 172 9.70e-25 99.0
MS.gene011857.t1 MTR_5g075020 41.739 115 67 0 11 125 41 155 4.35e-24 97.4
MS.gene011857.t1 MTR_5g083010 46.078 102 55 0 14 115 12 113 4.93e-24 95.9
MS.gene011857.t1 MTR_5g075020 41.739 115 67 0 11 125 45 159 5.95e-24 97.1
MS.gene011857.t1 MTR_7g028905 37.069 116 72 1 9 124 1 115 2.15e-22 89.7
MS.gene011857.t1 MTR_5g093010 37.736 106 66 0 9 114 1 106 5.14e-22 89.7
MS.gene011857.t1 MTR_3g071420 46.392 97 52 0 14 110 15 111 1.20e-21 89.7
MS.gene011857.t1 MTR_4g099230 43.137 102 57 1 14 114 3 104 1.34e-21 88.6
MS.gene011857.t1 MTR_6g027710 40.952 105 61 1 10 113 37 141 4.68e-21 89.4
MS.gene011857.t1 MTR_6g027700 38.679 106 63 2 6 110 1 105 9.46e-20 85.1
MS.gene011857.t1 MTR_7g096530 39.806 103 61 1 13 114 14 116 4.86e-19 83.6
MS.gene011857.t1 MTR_1g070220 41.414 99 57 1 13 110 15 113 3.85e-18 80.9
MS.gene011857.t1 MTR_8g036085 37.143 105 65 1 13 116 23 127 1.12e-17 80.1
MS.gene011857.t1 MTR_8g017090 34.951 103 67 0 14 116 13 115 2.08e-17 80.5
MS.gene011857.t1 MTR_8g036105 39.091 110 66 1 13 121 18 127 3.10e-17 78.6
MS.gene011857.t1 MTR_7g074990 38.235 102 62 1 13 113 20 121 3.30e-17 79.0
MS.gene011857.t1 MTR_6g011250 37.255 102 63 1 14 114 10 111 8.25e-17 76.6
MS.gene011857.t1 MTR_5g085390 37.500 120 71 2 10 125 3 122 3.52e-16 75.9
MS.gene011857.t1 MTR_1g070205 37.500 104 64 1 13 115 12 115 6.70e-16 75.1
MS.gene011857.t1 MTR_6g011200 34.862 109 67 2 10 114 3 111 7.18e-16 75.5
MS.gene011857.t1 MTR_4g107450 36.275 102 65 0 12 113 9 110 4.05e-15 73.9
MS.gene011857.t1 MTR_6g011230 32.759 116 71 1 12 120 10 125 5.19e-15 72.0
MS.gene011857.t1 MTR_2g100020 31.068 103 71 0 12 114 18 120 7.94e-15 73.2
MS.gene011857.t1 MTR_7g096610 34.615 104 67 1 13 115 8 111 1.48e-14 71.2
MS.gene011857.t1 MTR_5g080470 33.981 103 67 1 14 115 8 110 3.19e-13 67.0
MS.gene011857.t1 MTR_7g075230 36.190 105 64 2 13 114 12 116 5.45e-13 66.6
MS.gene011857.t1 MTR_4g088035 33.721 86 57 0 14 99 7 92 3.21e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011857.t1 AT5G66870 42.236 161 82 3 13 167 7 162 3.28e-33 123
MS.gene011857.t1 AT2G23660 49.524 105 53 0 13 117 5 109 3.08e-30 115
MS.gene011857.t1 AT2G23660 49.524 105 53 0 13 117 5 109 3.08e-30 115
MS.gene011857.t1 AT2G23660 49.524 105 53 0 13 117 5 109 3.08e-30 115
MS.gene011857.t1 AT1G65620 49.091 110 56 0 13 122 9 118 2.96e-29 110
MS.gene011857.t1 AT1G65620 49.091 110 56 0 13 122 9 118 2.96e-29 110
MS.gene011857.t1 AT1G65620 49.091 110 56 0 13 122 9 118 2.96e-29 110
MS.gene011857.t1 AT1G65620 49.091 110 56 0 13 122 9 118 2.96e-29 110
MS.gene011857.t1 AT1G65620 49.091 110 56 0 13 122 9 118 2.96e-29 110
MS.gene011857.t1 AT1G07900 46.226 106 57 0 8 113 28 133 3.13e-29 109
MS.gene011857.t1 AT5G63090 46.154 104 56 0 13 116 11 114 1.90e-28 107
MS.gene011857.t1 AT5G63090 46.154 104 56 0 13 116 11 114 1.90e-28 107
MS.gene011857.t1 AT5G63090 46.154 104 56 0 13 116 11 114 1.90e-28 107
MS.gene011857.t1 AT5G63090 46.154 104 56 0 13 116 11 114 1.90e-28 107
MS.gene011857.t1 AT3G27650 43.363 113 64 0 4 116 30 142 2.16e-28 106
MS.gene011857.t1 AT2G28500 45.714 105 57 0 9 113 51 155 7.93e-28 107
MS.gene011857.t1 AT2G30130 45.545 101 55 0 13 113 8 108 7.18e-27 103
MS.gene011857.t1 AT2G40470 43.966 116 65 0 11 126 18 133 2.29e-25 100
MS.gene011857.t1 AT2G30340 43.396 106 60 0 11 116 51 156 2.82e-25 101
MS.gene011857.t1 AT2G30340 43.396 106 60 0 11 116 50 155 3.10e-25 101
MS.gene011857.t1 AT1G16530 40.351 114 67 1 11 123 12 125 3.57e-25 98.6
MS.gene011857.t1 AT2G40470 43.966 116 65 0 11 126 43 158 4.48e-25 99.8
MS.gene011857.t1 AT3G26660 40.594 101 60 0 14 114 6 106 2.77e-24 94.7
MS.gene011857.t1 AT3G26620 40.594 101 60 0 14 114 6 106 3.15e-24 94.7
MS.gene011857.t1 AT1G31320 47.727 88 46 0 13 100 13 100 1.08e-23 94.7
MS.gene011857.t1 AT3G11090 42.000 100 58 0 14 113 12 111 1.97e-21 88.6
MS.gene011857.t1 AT5G35900 39.450 109 66 0 14 122 6 114 1.48e-20 87.4
MS.gene011857.t1 AT1G72980 39.000 100 61 0 14 113 14 113 2.01e-20 87.0
MS.gene011857.t1 AT3G50510 38.318 107 66 0 10 116 9 115 2.98e-20 86.3
MS.gene011857.t1 AT3G50510 38.318 107 66 0 10 116 9 115 2.98e-20 86.3
MS.gene011857.t1 AT4G00210 41.748 103 59 1 13 114 11 113 4.88e-19 83.6
MS.gene011857.t1 AT3G47870 37.143 105 66 0 14 118 37 141 1.57e-18 84.0
MS.gene011857.t1 AT3G03760 40.196 102 60 1 13 113 51 152 2.01e-18 83.2
MS.gene011857.t1 AT3G13850 34.951 103 67 0 14 116 37 139 9.54e-17 78.2
MS.gene011857.t1 AT2G42430 36.190 105 66 1 13 116 15 119 1.13e-16 77.8
MS.gene011857.t1 AT4G00220 38.000 100 61 1 16 114 20 119 7.95e-16 75.1
MS.gene011857.t1 AT3G58190 36.538 104 65 1 13 115 11 114 2.23e-15 73.6
MS.gene011857.t1 AT2G45410 40.000 100 59 1 16 114 19 118 3.42e-15 72.4
MS.gene011857.t1 AT2G42440 33.654 104 68 1 13 115 7 110 1.62e-14 71.6
MS.gene011857.t1 AT2G45420 34.653 101 65 1 16 115 40 140 5.67e-14 70.5
MS.gene011857.t1 AT4G22700 35.714 126 77 4 14 136 6 130 3.28e-13 67.0
MS.gene011857.t1 AT1G06280 38.961 77 47 0 14 90 25 101 3.94e-13 67.0
MS.gene011857.t1 AT2G31310 29.808 104 72 1 13 115 7 110 3.55e-12 63.9
MS.gene011857.t1 AT5G06080 31.731 104 70 1 14 116 8 111 7.04e-12 63.2

Find 76 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCTTGTTCGTGATTC+TGG 0.092323 8.2:+26223705 MS.gene011857:CDS
ATCTCTCTTATTATTCTTGT+TGG 0.231044 8.2:-26223830 None:intergenic
CTCGCCTTTCCTGATTGTTT+CGG 0.296820 8.2:+26223402 MS.gene011857:CDS
ATGTTCTTGTTCGTGATTCT+GGG 0.333393 8.2:+26223706 MS.gene011857:CDS
TAATATCGCATGGCATTGTT+AGG 0.339594 8.2:+26222916 None:intergenic
ATCAAGGTACACTCTGTGTT+TGG 0.360225 8.2:+26223153 MS.gene011857:CDS
CTACCTTGAAGGTCATTTGC+TGG 0.366573 8.2:-26223297 None:intergenic
TGAACAAGTTATTGAATCAT+TGG 0.367700 8.2:+26223224 MS.gene011857:CDS
GGCCAAATACCTCAGTCTTC+AGG 0.382099 8.2:+26223365 MS.gene011857:CDS
TTAAAACAAAAGCTTCTTAG+TGG 0.403319 8.2:+26223537 MS.gene011857:CDS
ATAGTATCAGCCCTAGAAAA+AGG 0.404708 8.2:-26223786 None:intergenic
GGACCCGCACAGCCATAGAC+TGG 0.409028 8.2:-26223276 None:intergenic
GACCTGAAGACTGAGGTATT+TGG 0.409929 8.2:-26223367 None:intergenic
GGCTTAAAGCCGAAACAATC+AGG 0.414666 8.2:-26223411 None:intergenic
GTTCGTGATTCTGGGTTGGC+AGG 0.416595 8.2:+26223714 MS.gene011857:CDS
GAGGAACGTCAGGAAGCATC+TGG 0.416860 8.2:-26223740 None:intergenic
ATGAAACGCTCCGGGTTGTC+AGG 0.419582 8.2:-26223132 None:intergenic
AGGTTGAGGGACCCAGTCTA+TGG 0.429899 8.2:+26223264 MS.gene011857:CDS
TTGACAAAACCACCACCAAC+AGG 0.431018 8.2:-26223645 None:intergenic
CAAGAACATCAGCATCCATC+TGG 0.431742 8.2:-26223692 None:intergenic
GACAGTCGGTGCAAGACAAT+TGG 0.445989 8.2:+26223455 MS.gene011857:CDS
GCCAACCCATCATCACCATC+GGG 0.452840 8.2:-26223561 None:intergenic
CTTCATTCAACCTACCTTGA+AGG 0.457276 8.2:-26223308 None:intergenic
ATAGTCCGTGCAGATGCATC+TGG 0.458278 8.2:-26223432 None:intergenic
AGCGTGCAAGCATCTCTGTC+AGG 0.467730 8.2:+26223071 MS.gene011857:CDS
AGATGCTTGCACGCTGCGCA+CGG 0.467835 8.2:-26223063 None:intergenic
AGTGGCCCCGATGGTGATGA+TGG 0.469173 8.2:+26223555 MS.gene011857:CDS
CAGGAACATTAACATCCATC+TGG 0.471455 8.2:-26223590 None:intergenic
GACCCAGTCTATGGCTGTGC+GGG 0.475222 8.2:+26223273 MS.gene011857:CDS
AGGTCCCACCCTGTTGGTGG+TGG 0.484462 8.2:+26223636 MS.gene011857:CDS
TGCCAACCCATCATCACCAT+CGG 0.501173 8.2:-26223562 None:intergenic
GCATCAACATGAGGAACGTC+AGG 0.503475 8.2:-26223750 None:intergenic
TGAGGCTGAGGCCAGGTTGA+GGG 0.503784 8.2:+26223251 MS.gene011857:CDS
TATTGAATCATTGGTGTATG+AGG 0.512390 8.2:+26223233 MS.gene011857:CDS
ATGAGGCTGAGGCCAGGTTG+AGG 0.520828 8.2:+26223250 MS.gene011857:CDS
GATGCTTGCACGCTGCGCAC+GGG 0.521004 8.2:-26223062 None:intergenic
GATGGTGATGATGGGTTGGC+AGG 0.524172 8.2:+26223564 MS.gene011857:CDS
GTTAATGTTCCTGTTGAAAA+CGG 0.528434 8.2:+26223600 MS.gene011857:CDS
ACTAGGTCCCACCCTGTTGG+TGG 0.529498 8.2:+26223633 MS.gene011857:CDS
CCCCGATGGTGATGATGGGT+TGG 0.540092 8.2:+26223560 MS.gene011857:CDS
TGTACCTTGATGAAACGCTC+CGG 0.546143 8.2:-26223141 None:intergenic
GGTCCAGCAAATGACCTTCA+AGG 0.548176 8.2:+26223294 MS.gene011857:CDS
TGTCAATGGCAGTAGTGACT+CGG 0.558039 8.2:+26223662 MS.gene011857:CDS
ATAGACTGGGTCCCTCAACC+TGG 0.566639 8.2:-26223262 None:intergenic
ATCATTGGTGTATGAGGCTG+AGG 0.566661 8.2:+26223239 MS.gene011857:CDS
CAAGAGTGTGAAGAACGAAC+TGG 0.569336 8.2:+26223344 MS.gene011857:CDS
AAAACGGTGGCACTAGTACT+AGG 0.572087 8.2:+26223616 MS.gene011857:CDS
TTACTTTCCACCTGACAACC+CGG 0.578049 8.2:+26223122 MS.gene011857:CDS
GACCCGCACAGCCATAGACT+GGG 0.578830 8.2:-26223275 None:intergenic
TGGTGTATGAGGCTGAGGCC+AGG 0.580144 8.2:+26223244 MS.gene011857:CDS
GTACCTTGATGAAACGCTCC+GGG 0.582999 8.2:-26223140 None:intergenic
TCTTGTTCGTGATTCTGGGT+TGG 0.583224 8.2:+26223710 MS.gene011857:CDS
AAACGCTCCGGGTTGTCAGG+TGG 0.583405 8.2:-26223129 None:intergenic
AAGCTTCTTAGTGGCCCCGA+TGG 0.587409 8.2:+26223546 MS.gene011857:CDS
AGTACTAGGTCCCACCCTGT+TGG 0.592718 8.2:+26223630 MS.gene011857:CDS
TGAGTCGTCAACTCAGCAGC+CGG 0.595230 8.2:-26223492 None:intergenic
CAACCCGGAGCGTTTCATCA+AGG 0.598807 8.2:+26223137 MS.gene011857:CDS
TGACTCGGCAAGACTCCAGA+TGG 0.599897 8.2:+26223677 MS.gene011857:CDS
GGACCCAGTCTATGGCTGTG+CGG 0.622378 8.2:+26223272 MS.gene011857:CDS
TAGGTTGAATGAAGTTCGAA+CGG 0.624296 8.2:+26223317 MS.gene011857:CDS
CAGCAAATGACCTTCAAGGT+AGG 0.629800 8.2:+26223298 MS.gene011857:CDS
AGGAACGTCAGGAAGCATCT+GGG 0.633015 8.2:-26223739 None:intergenic
GTGGCCCCGATGGTGATGAT+GGG 0.639305 8.2:+26223556 MS.gene011857:CDS
AAAGCCGAAACAATCAGGAA+AGG 0.640067 8.2:-26223406 None:intergenic
TTAAGCCAGATGCATCTGCA+CGG 0.640505 8.2:+26223427 MS.gene011857:CDS
AAAACCACCACCAACAGGGT+GGG 0.641004 8.2:-26223640 None:intergenic
TGGGTTGGCAGGATTCCAGA+TGG 0.675884 8.2:+26223575 MS.gene011857:CDS
CAGGTGGAAAGTAAAGAGCA+AGG 0.677449 8.2:-26223113 None:intergenic
CAAAACCACCACCAACAGGG+TGG 0.679233 8.2:-26223641 None:intergenic
TGACAAAACCACCACCAACA+GGG 0.680968 8.2:-26223644 None:intergenic
TCTGCACGGACTATGACAGT+CGG 0.684233 8.2:+26223441 MS.gene011857:CDS
AGGGCTGATACTATTGACAA+TGG 0.685373 8.2:+26223795 MS.gene011857:CDS
ATAGAAGGAGCATCAACATG+AGG 0.691907 8.2:-26223759 None:intergenic
ATTCAACGACCTGAAGACTG+AGG 0.717138 8.2:-26223374 None:intergenic
AATGTTCCTGTTGAAAACGG+TGG 0.735325 8.2:+26223603 MS.gene011857:CDS
CCAACCCATCATCACCATCG+GGG 0.738435 8.2:-26223560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAAATATAGACAA+TGG + chr8.2:26222941-26222960 MS.gene011857:intron 15.0%
! TGAACAAGTTATTGAATCAT+TGG + chr8.2:26223224-26223243 MS.gene011857:CDS 25.0%
! TTAAAACAAAAGCTTCTTAG+TGG + chr8.2:26223537-26223556 MS.gene011857:CDS 25.0%
GTTAATGTTCCTGTTGAAAA+CGG + chr8.2:26223600-26223619 MS.gene011857:CDS 30.0%
GTTAATTTAATGTGCAGTGA+TGG + chr8.2:26223023-26223042 MS.gene011857:intron 30.0%
TATTGAATCATTGGTGTATG+AGG + chr8.2:26223233-26223252 MS.gene011857:CDS 30.0%
! TTCTATGCTTCCTTTTTCTA+GGG + chr8.2:26223776-26223795 MS.gene011857:CDS 30.0%
ATAGTATCAGCCCTAGAAAA+AGG - chr8.2:26223789-26223808 None:intergenic 35.0%
ATGTTCTTGTTCGTGATTCT+GGG + chr8.2:26223706-26223725 MS.gene011857:CDS 35.0%
! CTAGAAAAAGGAAGCATAGA+AGG - chr8.2:26223777-26223796 None:intergenic 35.0%
! CTTCTATGCTTCCTTTTTCT+AGG + chr8.2:26223775-26223794 MS.gene011857:CDS 35.0%
! TAGGTTGAATGAAGTTCGAA+CGG + chr8.2:26223317-26223336 MS.gene011857:CDS 35.0%
AAAGCCGAAACAATCAGGAA+AGG - chr8.2:26223409-26223428 None:intergenic 40.0%
AATGTTCCTGTTGAAAACGG+TGG + chr8.2:26223603-26223622 MS.gene011857:CDS 40.0%
AGGGCTGATACTATTGACAA+TGG + chr8.2:26223795-26223814 MS.gene011857:CDS 40.0%
ATCAAGGTACACTCTGTGTT+TGG + chr8.2:26223153-26223172 MS.gene011857:CDS 40.0%
CAGGAACATTAACATCCATC+TGG - chr8.2:26223593-26223612 None:intergenic 40.0%
CTTCATTCAACCTACCTTGA+AGG - chr8.2:26223311-26223330 None:intergenic 40.0%
GATGTTCTTGTTCGTGATTC+TGG + chr8.2:26223705-26223724 MS.gene011857:CDS 40.0%
!! ATAGAAGGAGCATCAACATG+AGG - chr8.2:26223762-26223781 None:intergenic 40.0%
!!! ATTGGCTTTTAATCAGCTGC+CGG + chr8.2:26223473-26223492 MS.gene011857:CDS 40.0%
AAAACGGTGGCACTAGTACT+AGG + chr8.2:26223616-26223635 MS.gene011857:CDS 45.0%
ATCATTGGTGTATGAGGCTG+AGG + chr8.2:26223239-26223258 MS.gene011857:CDS 45.0%
ATTCAACGACCTGAAGACTG+AGG - chr8.2:26223377-26223396 None:intergenic 45.0%
CAAGAACATCAGCATCCATC+TGG - chr8.2:26223695-26223714 None:intergenic 45.0%
CAGCAAATGACCTTCAAGGT+AGG + chr8.2:26223298-26223317 MS.gene011857:CDS 45.0%
CAGGTGGAAAGTAAAGAGCA+AGG - chr8.2:26223116-26223135 None:intergenic 45.0%
CTACCTTGAAGGTCATTTGC+TGG - chr8.2:26223300-26223319 None:intergenic 45.0%
CTCGCCTTTCCTGATTGTTT+CGG + chr8.2:26223402-26223421 MS.gene011857:CDS 45.0%
GGCTTAAAGCCGAAACAATC+AGG - chr8.2:26223414-26223433 None:intergenic 45.0%
TCTTGTTCGTGATTCTGGGT+TGG + chr8.2:26223710-26223729 MS.gene011857:CDS 45.0%
TGACAAAACCACCACCAACA+GGG - chr8.2:26223647-26223666 None:intergenic 45.0%
TGTACCTTGATGAAACGCTC+CGG - chr8.2:26223144-26223163 None:intergenic 45.0%
TGTCAATGGCAGTAGTGACT+CGG + chr8.2:26223662-26223681 MS.gene011857:CDS 45.0%
TTAAGCCAGATGCATCTGCA+CGG + chr8.2:26223427-26223446 MS.gene011857:CDS 45.0%
TTACTTTCCACCTGACAACC+CGG + chr8.2:26223122-26223141 MS.gene011857:CDS 45.0%
TTGACAAAACCACCACCAAC+AGG - chr8.2:26223648-26223667 None:intergenic 45.0%
! CAAGAGTGTGAAGAACGAAC+TGG + chr8.2:26223344-26223363 MS.gene011857:CDS 45.0%
! GACCTGAAGACTGAGGTATT+TGG - chr8.2:26223370-26223389 None:intergenic 45.0%
!!! GTTGGTGGTGGTTTTGTCAA+TGG + chr8.2:26223648-26223667 MS.gene011857:CDS 45.0%
AAAACCACCACCAACAGGGT+GGG - chr8.2:26223643-26223662 None:intergenic 50.0%
ATAGTCCGTGCAGATGCATC+TGG - chr8.2:26223435-26223454 None:intergenic 50.0%
GACAGTCGGTGCAAGACAAT+TGG + chr8.2:26223455-26223474 MS.gene011857:CDS 50.0%
GCATCAACATGAGGAACGTC+AGG - chr8.2:26223753-26223772 None:intergenic 50.0%
GGCCAAATACCTCAGTCTTC+AGG + chr8.2:26223365-26223384 MS.gene011857:CDS 50.0%
GGTCCAGCAAATGACCTTCA+AGG + chr8.2:26223294-26223313 MS.gene011857:CDS 50.0%
GTACCTTGATGAAACGCTCC+GGG - chr8.2:26223143-26223162 None:intergenic 50.0%
TGCCAACCCATCATCACCAT+CGG - chr8.2:26223565-26223584 None:intergenic 50.0%
! CTAGTGCCACCGTTTTCAAC+AGG - chr8.2:26223612-26223631 None:intergenic 50.0%
! TCTGCACGGACTATGACAGT+CGG + chr8.2:26223441-26223460 MS.gene011857:CDS 50.0%
!! AGGAACGTCAGGAAGCATCT+GGG - chr8.2:26223742-26223761 None:intergenic 50.0%
AAGCTTCTTAGTGGCCCCGA+TGG + chr8.2:26223546-26223565 MS.gene011857:CDS 55.0%
AGCGTGCAAGCATCTCTGTC+AGG + chr8.2:26223071-26223090 MS.gene011857:CDS 55.0%
AGGTTGAGGGACCCAGTCTA+TGG + chr8.2:26223264-26223283 MS.gene011857:CDS 55.0%
AGTACTAGGTCCCACCCTGT+TGG + chr8.2:26223630-26223649 MS.gene011857:CDS 55.0%
ATAGACTGGGTCCCTCAACC+TGG - chr8.2:26223265-26223284 None:intergenic 55.0%
ATGAAACGCTCCGGGTTGTC+AGG - chr8.2:26223135-26223154 None:intergenic 55.0%
CAAAACCACCACCAACAGGG+TGG - chr8.2:26223644-26223663 None:intergenic 55.0%
CCAACCCATCATCACCATCG+GGG - chr8.2:26223563-26223582 None:intergenic 55.0%
GCCAACCCATCATCACCATC+GGG - chr8.2:26223564-26223583 None:intergenic 55.0%
TGAGTCGTCAACTCAGCAGC+CGG - chr8.2:26223495-26223514 None:intergenic 55.0%
! CAACCCGGAGCGTTTCATCA+AGG + chr8.2:26223137-26223156 MS.gene011857:CDS 55.0%
! TGACTCGGCAAGACTCCAGA+TGG + chr8.2:26223677-26223696 MS.gene011857:CDS 55.0%
!! GAGGAACGTCAGGAAGCATC+TGG - chr8.2:26223743-26223762 None:intergenic 55.0%
!! GATGGTGATGATGGGTTGGC+AGG + chr8.2:26223564-26223583 MS.gene011857:CDS 55.0%
!! GTTCGTGATTCTGGGTTGGC+AGG + chr8.2:26223714-26223733 MS.gene011857:CDS 55.0%
!! TGGGTTGGCAGGATTCCAGA+TGG + chr8.2:26223575-26223594 MS.gene011857:CDS 55.0%
AAACGCTCCGGGTTGTCAGG+TGG - chr8.2:26223132-26223151 None:intergenic 60.0%
ACTAGGTCCCACCCTGTTGG+TGG + chr8.2:26223633-26223652 MS.gene011857:CDS 60.0%
AGATGCTTGCACGCTGCGCA+CGG - chr8.2:26223066-26223085 None:intergenic 60.0%
ATGAGGCTGAGGCCAGGTTG+AGG + chr8.2:26223250-26223269 MS.gene011857:CDS 60.0%
GACCCAGTCTATGGCTGTGC+GGG + chr8.2:26223273-26223292 MS.gene011857:CDS 60.0%
GACCCGCACAGCCATAGACT+GGG - chr8.2:26223278-26223297 None:intergenic 60.0%
GGACCCAGTCTATGGCTGTG+CGG + chr8.2:26223272-26223291 MS.gene011857:CDS 60.0%
TGGTGTATGAGGCTGAGGCC+AGG + chr8.2:26223244-26223263 MS.gene011857:CDS 60.0%
! AGTGGCCCCGATGGTGATGA+TGG + chr8.2:26223555-26223574 MS.gene011857:CDS 60.0%
! GTGGCCCCGATGGTGATGAT+GGG + chr8.2:26223556-26223575 MS.gene011857:CDS 60.0%
! TGAGGCTGAGGCCAGGTTGA+GGG + chr8.2:26223251-26223270 MS.gene011857:CDS 60.0%
!! CCCCGATGGTGATGATGGGT+TGG + chr8.2:26223560-26223579 MS.gene011857:CDS 60.0%
GATGCTTGCACGCTGCGCAC+GGG - chr8.2:26223065-26223084 None:intergenic 65.0%
GGACCCGCACAGCCATAGAC+TGG - chr8.2:26223279-26223298 None:intergenic 65.0%
! AGGTCCCACCCTGTTGGTGG+TGG + chr8.2:26223636-26223655 MS.gene011857:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 26222925 26223842 26222925 ID=MS.gene011857
chr8.2 mRNA 26222925 26223842 26222925 ID=MS.gene011857.t1;Parent=MS.gene011857
chr8.2 exon 26222925 26222937 26222925 ID=MS.gene011857.t1.exon1;Parent=MS.gene011857.t1
chr8.2 CDS 26222925 26222937 26222925 ID=cds.MS.gene011857.t1;Parent=MS.gene011857.t1
chr8.2 exon 26223040 26223842 26223040 ID=MS.gene011857.t1.exon2;Parent=MS.gene011857.t1
chr8.2 CDS 26223040 26223842 26223040 ID=cds.MS.gene011857.t1;Parent=MS.gene011857.t1
Gene Sequence

>MS.gene011857

ATGGCATTGTTAGGTCAAGAAAAAAAATATAGACAATGGATTTCGTTTTCACTTTTTGTGTTATATATTGTTGTTGAATGAACTTAGTAATTGAATTTGTTAATTTAATGTGCAGTGATGGCAAGAGTGATTATTCGCCCGTGCGCAGCGTGCAAGCATCTCTGTCAGGAGTGCGACTCAAGCTGTGACCTTGCTCTTTACTTTCCACCTGACAACCCGGAGCGTTTCATCAAGGTACACTCTGTGTTTGGAAAGAACAATGTGTCGAATATGTTGAAAAAACTTGATGCTTCACATCATGAACAAGTTATTGAATCATTGGTGTATGAGGCTGAGGCCAGGTTGAGGGACCCAGTCTATGGCTGTGCGGGTCCAGCAAATGACCTTCAAGGTAGGTTGAATGAAGTTCGAACGGAACTCAAGAGTGTGAAGAACGAACTGGCCAAATACCTCAGTCTTCAGGTCGTTGAATTTGTTCTCGCCTTTCCTGATTGTTTCGGCTTTAAGCCAGATGCATCTGCACGGACTATGACAGTCGGTGCAAGACAATTGGCTTTTAATCAGCTGCCGGCTGCTGAGTTGACGACTCAACAGATTCACAACTTAGAAGTGTTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATGGGTTGGCAGGATTCCAGATGGATGTTAATGTTCCTGTTGAAAACGGTGGCACTAGTACTAGGTCCCACCCTGTTGGTGGTGGTTTTGTCAATGGCAGTAGTGACTCGGCAAGACTCCAGATGGATGCTGATGTTCTTGTTCGTGATTCTGGGTTGGCAGGATCCCAGATGCTTCCTGACGTTCCTCATGTTGATGCTCCTTCTATGCTTCCTTTTTCTAGGGCTGATACTATTGACAATGGTAAGACTAGCAACCAACAAGAATAA
Protein sequence

>MS.gene011857.t1

MALLVMARVIIRPCAACKHLCQECDSSCDLALYFPPDNPERFIKVHSVFGKNNVSNMLKKLDASHHEQVIESLVYEAEARLRDPVYGCAGPANDLQGRLNEVRTELKSVKNELAKYLSLQVVEFVLAFPDCFGFKPDASARTMTVGARQLAFNQLPAAELTTQQIHNLEVLKQKLLSGPDGDDGLAGFQMDVNVPVENGGTSTRSHPVGGGFVNGSSDSARLQMDADVLVRDSGLAGSQMLPDVPHVDAPSMLPFSRADTIDNGKTSNQQE