AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011858

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011858.t1 MTR_8g079620 84.030 263 17 2 1 263 1 238 2.93e-156 434
MS.gene011858.t1 MTR_8g079660 74.905 263 54 1 1 251 1 263 7.42e-142 399
MS.gene011858.t1 MTR_8g079580 48.276 174 82 3 1 171 1 169 1.06e-49 163
MS.gene011858.t1 MTR_5g017950 54.054 111 51 0 8 118 8 118 6.47e-36 130
MS.gene011858.t1 MTR_3g073690 51.818 110 53 0 8 117 9 118 2.77e-35 125
MS.gene011858.t1 MTR_3g452660 44.970 169 71 4 8 155 7 174 9.09e-35 126
MS.gene011858.t1 MTR_4g105170 49.038 104 53 0 8 111 11 114 3.88e-31 114
MS.gene011858.t1 MTR_3g077240 48.077 104 54 0 8 111 10 113 5.71e-30 111
MS.gene011858.t1 MTR_7g033800 46.154 104 56 0 8 111 11 114 1.17e-29 110
MS.gene011858.t1 MTR_5g083010 49.020 102 52 0 9 110 12 113 1.25e-29 110
MS.gene011858.t1 MTR_2g093310 43.609 133 70 2 5 135 30 159 1.63e-29 110
MS.gene011858.t1 MTR_3g031660 42.574 101 58 0 8 108 7 107 2.05e-28 107
MS.gene011858.t1 MTR_8g040900 47.826 115 60 0 8 122 7 121 5.93e-28 107
MS.gene011858.t1 MTR_5g083230 44.643 112 60 1 8 117 6 117 7.09e-28 105
MS.gene011858.t1 MTR_3g071590 44.554 101 56 0 8 108 8 108 1.46e-27 104
MS.gene011858.t1 MTR_2g068760 45.631 103 56 0 6 108 11 113 1.86e-27 103
MS.gene011858.t1 MTR_4g083680 40.146 137 75 2 8 144 15 144 4.06e-27 103
MS.gene011858.t1 MTR_6g005080 42.308 104 60 0 8 111 10 113 1.19e-26 101
MS.gene011858.t1 MTR_6g005070 44.444 108 59 1 8 115 9 115 3.31e-26 100
MS.gene011858.t1 MTR_4g060950 39.416 137 80 3 5 140 21 155 4.35e-26 101
MS.gene011858.t1 MTR_3g071420 47.423 97 51 0 9 105 15 111 3.07e-25 99.0
MS.gene011858.t1 MTR_1g095850 46.535 101 54 0 9 109 73 173 5.28e-25 99.8
MS.gene011858.t1 MTR_3g094690 43.396 106 60 0 6 111 45 150 5.83e-25 99.8
MS.gene011858.t1 MTR_5g083960 43.269 104 59 0 8 111 39 142 8.83e-25 98.2
MS.gene011858.t1 MTR_6g027700 44.660 103 56 1 4 105 3 105 1.26e-24 98.2
MS.gene011858.t1 MTR_3g094690 44.340 106 58 1 6 111 45 149 2.90e-24 97.8
MS.gene011858.t1 MTR_6g027710 41.667 108 62 1 2 108 34 141 3.79e-24 97.1
MS.gene011858.t1 MTR_8g036085 45.714 105 56 1 8 111 23 127 1.31e-23 95.9
MS.gene011858.t1 MTR_5g075020 40.870 115 68 0 6 120 41 155 6.18e-23 94.0
MS.gene011858.t1 MTR_5g075020 40.870 115 68 0 6 120 45 159 9.06e-23 93.6
MS.gene011858.t1 MTR_4g099230 44.118 102 56 1 9 109 3 104 1.62e-22 90.9
MS.gene011858.t1 MTR_7g028905 36.190 105 67 0 5 109 2 106 3.90e-22 89.0
MS.gene011858.t1 MTR_8g017090 37.143 105 66 0 7 111 11 115 1.29e-21 92.0
MS.gene011858.t1 MTR_7g096530 41.748 103 59 1 8 109 14 116 1.53e-21 90.1
MS.gene011858.t1 MTR_5g093010 36.634 101 64 0 9 109 6 106 2.37e-21 87.4
MS.gene011858.t1 MTR_7g074990 44.118 102 56 1 8 108 20 121 4.28e-21 89.4
MS.gene011858.t1 MTR_1g070205 43.269 104 58 1 8 110 12 115 3.04e-20 87.0
MS.gene011858.t1 MTR_6g011250 40.385 104 61 1 7 109 8 111 4.32e-20 85.5
MS.gene011858.t1 MTR_8g036105 42.718 103 58 1 8 109 18 120 1.04e-19 85.1
MS.gene011858.t1 MTR_6g011200 39.450 109 62 2 5 109 3 111 2.23e-19 85.1
MS.gene011858.t1 MTR_7g096610 40.385 104 61 1 8 110 8 111 2.96e-19 84.0
MS.gene011858.t1 MTR_4g107450 38.235 102 63 0 7 108 9 110 5.27e-19 84.7
MS.gene011858.t1 MTR_1g070220 40.594 101 59 1 8 107 15 115 5.76e-19 82.8
MS.gene011858.t1 MTR_5g080470 37.864 103 63 1 9 110 8 110 1.21e-17 79.0
MS.gene011858.t1 MTR_5g085390 39.450 109 62 2 5 109 3 111 1.55e-17 79.7
MS.gene011858.t1 MTR_2g100020 33.981 103 68 0 7 109 18 120 1.86e-17 80.1
MS.gene011858.t1 MTR_6g011230 34.343 99 65 0 7 105 10 108 4.08e-17 77.8
MS.gene011858.t1 MTR_4g088035 37.209 86 54 0 9 94 7 92 1.14e-16 77.8
MS.gene011858.t1 MTR_7g075230 40.952 105 59 2 8 109 12 116 1.19e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011858.t1 AT5G66870 43.590 156 75 2 8 163 7 149 8.41e-34 124
MS.gene011858.t1 AT1G65620 56.731 104 45 0 8 111 9 112 1.85e-31 115
MS.gene011858.t1 AT1G65620 56.731 104 45 0 8 111 9 112 1.85e-31 115
MS.gene011858.t1 AT1G65620 56.731 104 45 0 8 111 9 112 1.85e-31 115
MS.gene011858.t1 AT1G65620 56.731 104 45 0 8 111 9 112 1.85e-31 115
MS.gene011858.t1 AT1G65620 56.731 104 45 0 8 111 9 112 1.85e-31 115
MS.gene011858.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.03e-30 113
MS.gene011858.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.03e-30 113
MS.gene011858.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.03e-30 113
MS.gene011858.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.03e-30 113
MS.gene011858.t1 AT2G23660 50.909 110 54 0 8 117 5 114 2.06e-30 115
MS.gene011858.t1 AT2G23660 50.909 110 54 0 8 117 5 114 2.06e-30 115
MS.gene011858.t1 AT2G23660 50.909 110 54 0 8 117 5 114 2.06e-30 115
MS.gene011858.t1 AT3G27650 46.154 104 56 0 8 111 39 142 1.26e-27 104
MS.gene011858.t1 AT1G07900 45.283 106 58 0 3 108 28 133 1.47e-27 105
MS.gene011858.t1 AT2G30130 45.545 101 55 0 8 108 8 108 2.25e-27 104
MS.gene011858.t1 AT2G28500 46.154 104 56 0 5 108 52 155 2.56e-27 105
MS.gene011858.t1 AT1G16530 46.154 104 55 1 6 108 12 115 2.85e-26 101
MS.gene011858.t1 AT3G11090 45.000 100 55 0 9 108 12 111 3.88e-26 100
MS.gene011858.t1 AT1G31320 48.864 88 45 0 8 95 13 100 7.98e-26 100
MS.gene011858.t1 AT3G50510 43.243 111 62 1 1 111 6 115 1.33e-25 100
MS.gene011858.t1 AT3G50510 43.243 111 62 1 1 111 6 115 1.33e-25 100
MS.gene011858.t1 AT5G35900 44.231 104 58 0 9 112 6 109 5.44e-25 99.0
MS.gene011858.t1 AT3G26660 40.594 101 60 0 9 109 6 106 6.12e-24 93.6
MS.gene011858.t1 AT3G26620 40.594 101 60 0 9 109 6 106 7.72e-24 93.6
MS.gene011858.t1 AT2G30340 42.453 106 61 0 6 111 51 156 9.65e-24 97.1
MS.gene011858.t1 AT2G40470 41.379 116 68 0 6 121 18 133 9.67e-24 95.5
MS.gene011858.t1 AT2G30340 42.453 106 61 0 6 111 50 155 1.15e-23 97.1
MS.gene011858.t1 AT2G40470 41.379 116 68 0 6 121 43 158 3.61e-23 94.7
MS.gene011858.t1 AT1G72980 39.000 100 61 0 9 108 14 113 7.57e-22 90.9
MS.gene011858.t1 AT4G00210 44.762 105 53 2 8 109 11 113 2.05e-21 89.7
MS.gene011858.t1 AT3G03760 43.137 102 57 1 8 108 51 152 3.23e-21 90.5
MS.gene011858.t1 AT3G47870 38.835 103 63 0 9 111 37 139 3.98e-21 91.3
MS.gene011858.t1 AT2G42430 40.777 103 60 1 8 109 15 117 4.84e-21 89.4
MS.gene011858.t1 AT3G13850 37.864 103 64 0 9 111 37 139 6.60e-21 89.4
MS.gene011858.t1 AT3G58190 42.308 104 59 1 8 110 11 114 3.52e-20 86.7
MS.gene011858.t1 AT2G45420 43.000 100 56 1 11 109 40 139 1.56e-19 85.5
MS.gene011858.t1 AT4G00220 44.000 100 55 1 11 109 20 119 3.24e-19 84.0
MS.gene011858.t1 AT2G42440 38.462 104 63 1 8 110 7 110 4.14e-19 84.3
MS.gene011858.t1 AT2G45410 42.000 100 57 1 11 109 19 118 1.11e-17 79.0
MS.gene011858.t1 AT4G22700 36.508 126 76 4 9 131 6 130 5.07e-17 77.4
MS.gene011858.t1 AT2G31310 36.538 104 65 1 8 110 7 110 3.13e-16 75.1
MS.gene011858.t1 AT5G06080 34.286 105 68 1 8 111 7 111 8.63e-15 70.9
MS.gene011858.t1 AT1G06280 36.709 79 50 0 7 85 23 101 3.33e-13 67.0

Find 93 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCCTGTTCATGATTC+TGG 0.107641 8.2:+26244369 MS.gene011858:CDS
CTTCTGTGCTTCCTTCTTCT+AGG 0.193943 8.2:+26244439 MS.gene011858:CDS
ATGTTCCTGTTCATGATTCT+GGG 0.297022 8.2:+26244370 MS.gene011858:CDS
GTTCATGATTCTGGGTTGGC+TGG 0.362539 8.2:+26244378 MS.gene011858:CDS
GACCTGAGGATTGAGGTATT+TGG 0.365999 8.2:-26244067 None:intergenic
CTACCTTGAAGGTCATTTGC+TGG 0.366573 8.2:-26243997 None:intergenic
GCCAAGGTACACTCGGTGTT+TGG 0.371149 8.2:+26243853 MS.gene011858:CDS
AAACGCTCCAAGTTGTCCTT+TGG 0.382954 8.2:-26243829 None:intergenic
AGCAACCAGGGTCGATTGCC+GGG 0.393568 8.2:+26244495 MS.gene011858:CDS
AAGCAACCAGGGTCGATTGC+CGG 0.397461 8.2:+26244494 MS.gene011858:CDS
GGCTTAAAGCCAAAACAATC+AGG 0.409263 8.2:-26244111 None:intergenic
TTCTGTGCTTCCTTCTTCTA+GGG 0.409577 8.2:+26244440 MS.gene011858:CDS
GAGGAACATGAGGAAGCATC+TGG 0.409895 8.2:-26244404 None:intergenic
CTAAAACAAAAGCTTCTTAG+TGG 0.418812 8.2:+26244237 MS.gene011858:CDS
CAGGAACATCAGCACCCATC+TGG 0.437219 8.2:-26244356 None:intergenic
AAGTTGTCCTTTGGAAAGTA+AGG 0.439193 8.2:-26243820 None:intergenic
AGCACAGAAGGAGCATCAAC+AGG 0.442967 8.2:-26244426 None:intergenic
AGCTAGGGTGGCACTTCCTA+TGG 0.445033 8.2:-26243786 None:intergenic
GGTGGTTCAGTCGGTGGCAG+TGG 0.448506 8.2:+26244318 MS.gene011858:CDS
TCCTGTTCATGATTCTGGGT+TGG 0.449021 8.2:+26244374 MS.gene011858:CDS
GACAGTCGGTGGAGGACCAT+TGG 0.450872 8.2:+26244155 MS.gene011858:CDS
CTTCATTCAACCTACCTTGA+AGG 0.452245 8.2:-26244008 None:intergenic
GCCAACCCATCATCACCATC+GGG 0.452840 8.2:-26244261 None:intergenic
AGTGGCCCCGATGGTGATGA+TGG 0.469173 8.2:+26244255 MS.gene011858:CDS
CAGGAACATTAACATCCATC+TGG 0.471455 8.2:-26244290 None:intergenic
GACCCTATCCATGGTTGTGC+GGG 0.480158 8.2:+26243973 MS.gene011858:CDS
ACAGTCGGTGGAGGACCATT+GGG 0.481003 8.2:+26244156 MS.gene011858:CDS
GGCTCCCCGGCAATCGACCC+TGG 0.481884 8.2:-26244500 None:intergenic
GCCAACCCAGAATCATGAAC+AGG 0.484253 8.2:-26244375 None:intergenic
TTACTTTCCAAAGGACAACT+TGG 0.485558 8.2:+26243822 MS.gene011858:CDS
ATAGTCGGTGGAGAAGCATT+TGG 0.487182 8.2:-26244132 None:intergenic
TGGTGTATGAAGCTGATGCC+TGG 0.491815 8.2:+26243944 MS.gene011858:CDS
CCGACTGAACCACCACCAAC+AGG 0.496150 8.2:-26244309 None:intergenic
AGTCGGTGGCAGTGGTGGCT+CGG 0.496637 8.2:+26244326 MS.gene011858:CDS
TAAGGAGCTAAGACACAGCT+AGG 0.498376 8.2:-26243802 None:intergenic
TGCCAACCCATCATCACCAT+CGG 0.501173 8.2:-26244262 None:intergenic
TGAACAAGCTGTTGAATCCT+TGG 0.502541 8.2:+26243924 MS.gene011858:CDS
GTTAATGTTCCTGTTGGTGG+TGG 0.504572 8.2:+26244300 MS.gene011858:CDS
GATGTTAATGTTCCTGTTGG+TGG 0.510237 8.2:+26244297 MS.gene011858:CDS
TAGGTTGAATGAAGCTCAAA+CGG 0.515884 8.2:+26244017 MS.gene011858:CDS
AAAGTATCAGCCCTAGAAGA+AGG 0.518742 8.2:-26244450 None:intergenic
CAAGAGTATGAAGAATGAAC+TGG 0.518901 8.2:+26244044 MS.gene011858:CDS
GATGGTGATGATGGGTTGGC+AGG 0.524172 8.2:+26244264 MS.gene011858:CDS
CTAGAAGAAGGAAGCACAGA+AGG 0.524800 8.2:-26244438 None:intergenic
GACCCGCACAACCATGGATA+GGG 0.528727 8.2:-26243975 None:intergenic
TTGCTGGACCCGCACAACCA+TGG 0.531067 8.2:-26243981 None:intergenic
GGTTCAGTCGGTGGCAGTGG+TGG 0.531303 8.2:+26244321 MS.gene011858:CDS
CTTAGCTCCTTACTTTCCAA+AGG 0.539710 8.2:+26243813 MS.gene011858:CDS
CCCCGATGGTGATGATGGGT+TGG 0.540092 8.2:+26244260 MS.gene011858:CDS
GATCAAACGTTGTGGCTCCC+CGG 0.541997 8.2:-26244513 None:intergenic
ATGAAGCTGATGCCTGGTTG+AGG 0.542839 8.2:+26243950 MS.gene011858:CDS
TCCAAACACCGAGTGTACCT+TGG 0.546759 8.2:-26243854 None:intergenic
GGTCCAGCAAATGACCTTCA+AGG 0.548176 8.2:+26243994 MS.gene011858:CDS
GGCCAAATACCTCAATCCTC+AGG 0.557788 8.2:+26244065 MS.gene011858:CDS
TGGCTCGGCAAGATTCCAGA+TGG 0.560308 8.2:+26244341 MS.gene011858:CDS
GGACCCGCACAACCATGGAT+AGG 0.560372 8.2:-26243976 None:intergenic
CCTGTTGGTGGTGGTTCAGT+CGG 0.562105 8.2:+26244309 MS.gene011858:CDS
AGATGCTTGCAAGCTGCACA+TGG 0.564745 8.2:-26243763 None:intergenic
GGACCCTATCCATGGTTGTG+CGG 0.567733 8.2:+26243972 MS.gene011858:CDS
TAGCACTAGCACAAGCAACC+AGG 0.569645 8.2:+26244482 MS.gene011858:CDS
TGAAGCTGATGCCTGGTTGA+GGG 0.570610 8.2:+26243951 MS.gene011858:CDS
GGCTCGGCAAGATTCCAGAT+GGG 0.571382 8.2:+26244342 MS.gene011858:CDS
ATGGATAGGGTCCCTCAACC+AGG 0.574346 8.2:-26243962 None:intergenic
ATTCAACGACCTGAGGATTG+AGG 0.583762 8.2:-26244074 None:intergenic
CAGCTTGCAAGCATCTCCAT+AGG 0.587034 8.2:+26243770 MS.gene011858:CDS
AAGCTTCTTAGTGGCCCCGA+TGG 0.587409 8.2:+26244246 MS.gene011858:CDS
ATGGATGTTAATGTTCCTGT+TGG 0.590588 8.2:+26244294 MS.gene011858:CDS
TGGTTGAGGGACCCTATCCA+TGG 0.595646 8.2:+26243964 MS.gene011858:CDS
TGAGTCGTTAACTCAGCAGC+TGG 0.600497 8.2:-26244192 None:intergenic
GCAACCAGGGTCGATTGCCG+GGG 0.604916 8.2:+26244496 MS.gene011858:CDS
CCTCCACCGACTGTCATAGT+CGG 0.607543 8.2:-26244147 None:intergenic
CAACTTGGAGCGTTTCGCCA+AGG 0.611250 8.2:+26243837 MS.gene011858:CDS
GCATCAACAGGAGGAACATG+AGG 0.622008 8.2:-26244414 None:intergenic
AGGAACATGAGGAAGCATCT+GGG 0.622177 8.2:-26244403 None:intergenic
GTTGGTGGTGGTTCAGTCGG+TGG 0.623040 8.2:+26244312 MS.gene011858:CDS
GGCAGCTGATTAAAACCCAA+TGG 0.624529 8.2:-26244171 None:intergenic
CGCCGCAAGATCAAACGTTG+TGG 0.625416 8.2:-26244521 None:intergenic
GAGCTAAGACACAGCTAGGG+TGG 0.629501 8.2:-26243798 None:intergenic
CAGCAAATGACCTTCAAGGT+AGG 0.629800 8.2:+26243998 MS.gene011858:CDS
CCACCGACTGTCATAGTCGG+TGG 0.630005 8.2:-26244144 None:intergenic
GCGTTTCGCCAAGGTACACT+CGG 0.634058 8.2:+26243846 MS.gene011858:CDS
AAGGAGCTAAGACACAGCTA+GGG 0.637825 8.2:-26243801 None:intergenic
CCGACTATGACAGTCGGTGG+AGG 0.638161 8.2:+26244147 MS.gene011858:CDS
GTGGCCCCGATGGTGATGAT+GGG 0.639305 8.2:+26244256 MS.gene011858:CDS
CCACCGACTATGACAGTCGG+TGG 0.655151 8.2:+26244144 MS.gene011858:CDS
GATGCTTGCAAGCTGCACAT+GGG 0.660822 8.2:-26243762 None:intergenic
AGCACTAGCACAAGCAACCA+GGG 0.667332 8.2:+26244483 MS.gene011858:CDS
TCTCCACCGACTATGACAGT+CGG 0.670674 8.2:+26244141 MS.gene011858:CDS
AGAACAAATTCAACGACCTG+AGG 0.672940 8.2:-26244081 None:intergenic
TGGGTTGGCAGGATTCCAGA+TGG 0.675884 8.2:+26244275 MS.gene011858:CDS
ACAGAAGGAGCATCAACAGG+AGG 0.677829 8.2:-26244423 None:intergenic
GGCATCAGCTTCATACACCA+AGG 0.679242 8.2:-26243941 None:intergenic
CCAACCCATCATCACCATCG+GGG 0.738435 8.2:-26244260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CTAAAACAAAAGCTTCTTAG+TGG + chr8.2:26244237-26244256 MS.gene011858:CDS 30.0%
GACTAATCTGTTGAAAAAAC+TGG + chr8.2:26243888-26243907 MS.gene011858:CDS 30.0%
!!! GCTTTTGTTTTAGAACTTCT+AGG - chr8.2:26244230-26244249 None:intergenic 30.0%
ATGGATGTTAATGTTCCTGT+TGG + chr8.2:26244294-26244313 MS.gene011858:CDS 35.0%
ATGTTCCTGTTCATGATTCT+GGG + chr8.2:26244370-26244389 MS.gene011858:CDS 35.0%
TTACTTTCCAAAGGACAACT+TGG + chr8.2:26243822-26243841 MS.gene011858:CDS 35.0%
! AAGTTGTCCTTTGGAAAGTA+AGG - chr8.2:26243823-26243842 None:intergenic 35.0%
! CAAGAGTATGAAGAATGAAC+TGG + chr8.2:26244044-26244063 MS.gene011858:CDS 35.0%
! TAGGTTGAATGAAGCTCAAA+CGG + chr8.2:26244017-26244036 MS.gene011858:CDS 35.0%
AGAACAAATTCAACGACCTG+AGG - chr8.2:26244084-26244103 None:intergenic 40.0%
CAGGAACATTAACATCCATC+TGG - chr8.2:26244293-26244312 None:intergenic 40.0%
CTTAGCTCCTTACTTTCCAA+AGG + chr8.2:26243813-26243832 MS.gene011858:CDS 40.0%
CTTCATTCAACCTACCTTGA+AGG - chr8.2:26244011-26244030 None:intergenic 40.0%
GATGTTAATGTTCCTGTTGG+TGG + chr8.2:26244297-26244316 MS.gene011858:CDS 40.0%
GATGTTCCTGTTCATGATTC+TGG + chr8.2:26244369-26244388 MS.gene011858:CDS 40.0%
GGCTTAAAGCCAAAACAATC+AGG - chr8.2:26244114-26244133 None:intergenic 40.0%
TGAACAAGCTGTTGAATCCT+TGG + chr8.2:26243924-26243943 MS.gene011858:CDS 40.0%
TTCTGTGCTTCCTTCTTCTA+GGG + chr8.2:26244440-26244459 MS.gene011858:CDS 40.0%
! AAAGTATCAGCCCTAGAAGA+AGG - chr8.2:26244453-26244472 None:intergenic 40.0%
! AGGGCTGATACTTTTGACAA+TGG + chr8.2:26244459-26244478 MS.gene011858:CDS 40.0%
!! CTCGCTTTTCCTGATTGTTT+TGG + chr8.2:26244102-26244121 MS.gene011858:CDS 40.0%
AAACGCTCCAAGTTGTCCTT+TGG - chr8.2:26243832-26243851 None:intergenic 45.0%
AAGGAGCTAAGACACAGCTA+GGG - chr8.2:26243804-26243823 None:intergenic 45.0%
ATTCAACGACCTGAGGATTG+AGG - chr8.2:26244077-26244096 None:intergenic 45.0%
CAGCAAATGACCTTCAAGGT+AGG + chr8.2:26243998-26244017 MS.gene011858:CDS 45.0%
CTACCTTGAAGGTCATTTGC+TGG - chr8.2:26244000-26244019 None:intergenic 45.0%
CTTCTGTGCTTCCTTCTTCT+AGG + chr8.2:26244439-26244458 MS.gene011858:CDS 45.0%
GGCAGCTGATTAAAACCCAA+TGG - chr8.2:26244174-26244193 None:intergenic 45.0%
TAAGGAGCTAAGACACAGCT+AGG - chr8.2:26243805-26243824 None:intergenic 45.0%
TCCTGTTCATGATTCTGGGT+TGG + chr8.2:26244374-26244393 MS.gene011858:CDS 45.0%
! CTAGAAGAAGGAAGCACAGA+AGG - chr8.2:26244441-26244460 None:intergenic 45.0%
! GACCTGAGGATTGAGGTATT+TGG - chr8.2:26244070-26244089 None:intergenic 45.0%
! GTTAATGTTCCTGTTGGTGG+TGG + chr8.2:26244300-26244319 MS.gene011858:CDS 45.0%
!! AGGAACATGAGGAAGCATCT+GGG - chr8.2:26244406-26244425 None:intergenic 45.0%
!! ATAGTCGGTGGAGAAGCATT+TGG - chr8.2:26244135-26244154 None:intergenic 45.0%
AGATGCTTGCAAGCTGCACA+TGG - chr8.2:26243766-26243785 None:intergenic 50.0%
AGCACTAGCACAAGCAACCA+GGG + chr8.2:26244483-26244502 MS.gene011858:CDS 50.0%
ATGAAGCTGATGCCTGGTTG+AGG + chr8.2:26243950-26243969 MS.gene011858:CDS 50.0%
CAGCTTGCAAGCATCTCCAT+AGG + chr8.2:26243770-26243789 MS.gene011858:CDS 50.0%
GATGCTTGCAAGCTGCACAT+GGG - chr8.2:26243765-26243784 None:intergenic 50.0%
GCATCAACAGGAGGAACATG+AGG - chr8.2:26244417-26244436 None:intergenic 50.0%
GCCAACCCAGAATCATGAAC+AGG - chr8.2:26244378-26244397 None:intergenic 50.0%
GGCATCAGCTTCATACACCA+AGG - chr8.2:26243944-26243963 None:intergenic 50.0%
GGCCAAATACCTCAATCCTC+AGG + chr8.2:26244065-26244084 MS.gene011858:CDS 50.0%
GGTCCAGCAAATGACCTTCA+AGG + chr8.2:26243994-26244013 MS.gene011858:CDS 50.0%
TAGCACTAGCACAAGCAACC+AGG + chr8.2:26244482-26244501 MS.gene011858:CDS 50.0%
TCCAAACACCGAGTGTACCT+TGG - chr8.2:26243857-26243876 None:intergenic 50.0%
TGAAGCTGATGCCTGGTTGA+GGG + chr8.2:26243951-26243970 MS.gene011858:CDS 50.0%
TGAGTCGTTAACTCAGCAGC+TGG - chr8.2:26244195-26244214 None:intergenic 50.0%
TGCCAACCCATCATCACCAT+CGG - chr8.2:26244265-26244284 None:intergenic 50.0%
TGGTGTATGAAGCTGATGCC+TGG + chr8.2:26243944-26243963 MS.gene011858:CDS 50.0%
! TCTCCACCGACTATGACAGT+CGG + chr8.2:26244141-26244160 MS.gene011858:CDS 50.0%
!! ACAGAAGGAGCATCAACAGG+AGG - chr8.2:26244426-26244445 None:intergenic 50.0%
!! AGCACAGAAGGAGCATCAAC+AGG - chr8.2:26244429-26244448 None:intergenic 50.0%
!! GAGGAACATGAGGAAGCATC+TGG - chr8.2:26244407-26244426 None:intergenic 50.0%
!! GTTCATGATTCTGGGTTGGC+TGG + chr8.2:26244378-26244397 MS.gene011858:CDS 50.0%
AAGCAACCAGGGTCGATTGC+CGG + chr8.2:26244494-26244513 MS.gene011858:CDS 55.0%
AAGCTTCTTAGTGGCCCCGA+TGG + chr8.2:26244246-26244265 MS.gene011858:CDS 55.0%
ACAGTCGGTGGAGGACCATT+GGG + chr8.2:26244156-26244175 MS.gene011858:CDS 55.0%
AGCTAGGGTGGCACTTCCTA+TGG - chr8.2:26243789-26243808 None:intergenic 55.0%
ATGGATAGGGTCCCTCAACC+AGG - chr8.2:26243965-26243984 None:intergenic 55.0%
CAGGAACATCAGCACCCATC+TGG - chr8.2:26244359-26244378 None:intergenic 55.0%
CCAACCCATCATCACCATCG+GGG - chr8.2:26244263-26244282 None:intergenic 55.0%
GACCCGCACAACCATGGATA+GGG - chr8.2:26243978-26243997 None:intergenic 55.0%
GACCCTATCCATGGTTGTGC+GGG + chr8.2:26243973-26243992 MS.gene011858:CDS 55.0%
GAGCTAAGACACAGCTAGGG+TGG - chr8.2:26243801-26243820 None:intergenic 55.0%
GCCAACCCATCATCACCATC+GGG - chr8.2:26244264-26244283 None:intergenic 55.0%
GCGTTTCGCCAAGGTACACT+CGG + chr8.2:26243846-26243865 MS.gene011858:CDS 55.0%
GGACCCTATCCATGGTTGTG+CGG + chr8.2:26243972-26243991 MS.gene011858:CDS 55.0%
GGCTCGGCAAGATTCCAGAT+GGG + chr8.2:26244342-26244361 MS.gene011858:CDS 55.0%
TGGTTGAGGGACCCTATCCA+TGG + chr8.2:26243964-26243983 MS.gene011858:CDS 55.0%
! CAACTTGGAGCGTTTCGCCA+AGG + chr8.2:26243837-26243856 MS.gene011858:CDS 55.0%
! CCTCCACCGACTGTCATAGT+CGG - chr8.2:26244150-26244169 None:intergenic 55.0%
! TGGCTCGGCAAGATTCCAGA+TGG + chr8.2:26244341-26244360 MS.gene011858:CDS 55.0%
!! CCTGTTGGTGGTGGTTCAGT+CGG + chr8.2:26244309-26244328 MS.gene011858:CDS 55.0%
!! GATGGTGATGATGGGTTGGC+AGG + chr8.2:26244264-26244283 MS.gene011858:CDS 55.0%
!! GCCAAGGTACACTCGGTGTT+TGG + chr8.2:26243853-26243872 MS.gene011858:CDS 55.0%
!! TGGGTTGGCAGGATTCCAGA+TGG + chr8.2:26244275-26244294 MS.gene011858:CDS 55.0%
AGCAACCAGGGTCGATTGCC+GGG + chr8.2:26244495-26244514 MS.gene011858:CDS 60.0%
CCGACTATGACAGTCGGTGG+AGG + chr8.2:26244147-26244166 MS.gene011858:CDS 60.0%
CCGACTGAACCACCACCAAC+AGG - chr8.2:26244312-26244331 None:intergenic 60.0%
GACAGTCGGTGGAGGACCAT+TGG + chr8.2:26244155-26244174 MS.gene011858:CDS 60.0%
GGACCCGCACAACCATGGAT+AGG - chr8.2:26243979-26243998 None:intergenic 60.0%
TTGCTGGACCCGCACAACCA+TGG - chr8.2:26243984-26244003 None:intergenic 60.0%
! AGTGGCCCCGATGGTGATGA+TGG + chr8.2:26244255-26244274 MS.gene011858:CDS 60.0%
! CCACCGACTATGACAGTCGG+TGG + chr8.2:26244144-26244163 MS.gene011858:CDS 60.0%
! CCACCGACTGTCATAGTCGG+TGG - chr8.2:26244147-26244166 None:intergenic 60.0%
! GTGGCCCCGATGGTGATGAT+GGG + chr8.2:26244256-26244275 MS.gene011858:CDS 60.0%
!! CCCCGATGGTGATGATGGGT+TGG + chr8.2:26244260-26244279 MS.gene011858:CDS 60.0%
!! GTTGGTGGTGGTTCAGTCGG+TGG + chr8.2:26244312-26244331 MS.gene011858:CDS 60.0%
AGTCGGTGGCAGTGGTGGCT+CGG + chr8.2:26244326-26244345 MS.gene011858:CDS 65.0%
GCAACCAGGGTCGATTGCCG+GGG + chr8.2:26244496-26244515 MS.gene011858:CDS 65.0%
GGTGGTTCAGTCGGTGGCAG+TGG + chr8.2:26244318-26244337 MS.gene011858:CDS 65.0%
GGTTCAGTCGGTGGCAGTGG+TGG + chr8.2:26244321-26244340 MS.gene011858:CDS 65.0%
GGCTCCCCGGCAATCGACCC+TGG - chr8.2:26244503-26244522 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 26243742 26244533 26243742 ID=MS.gene011858
chr8.2 mRNA 26243742 26244533 26243742 ID=MS.gene011858.t1;Parent=MS.gene011858
chr8.2 exon 26243742 26244533 26243742 ID=MS.gene011858.t1.exon1;Parent=MS.gene011858.t1
chr8.2 CDS 26243742 26244533 26243742 ID=cds.MS.gene011858.t1;Parent=MS.gene011858.t1
Gene Sequence

>MS.gene011858

ATGGATAGAGAGATTATTCGCCCATGTGCAGCTTGCAAGCATCTCCATAGGAAGTGCCACCCTAGCTGTGTCTTAGCTCCTTACTTTCCAAAGGACAACTTGGAGCGTTTCGCCAAGGTACACTCGGTGTTTGGAAAGAGAAATGTGACTAATCTGTTGAAAAAACTGGATGTTTCACATCATGAACAAGCTGTTGAATCCTTGGTGTATGAAGCTGATGCCTGGTTGAGGGACCCTATCCATGGTTGTGCGGGTCCAGCAAATGACCTTCAAGGTAGGTTGAATGAAGCTCAAACGGAGCTCAAGAGTATGAAGAATGAACTGGCCAAATACCTCAATCCTCAGGTCGTTGAATTTGTTCTCGCTTTTCCTGATTGTTTTGGCTTTAAGCCAAATGCTTCTCCACCGACTATGACAGTCGGTGGAGGACCATTGGGTTTTAATCAGCTGCCAGCTGCTGAGTTAACGACTCAGCAGCTTCACAACCTAGAAGTTCTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATGGGTTGGCAGGATTCCAGATGGATGTTAATGTTCCTGTTGGTGGTGGTTCAGTCGGTGGCAGTGGTGGCTCGGCAAGATTCCAGATGGGTGCTGATGTTCCTGTTCATGATTCTGGGTTGGCTGGATCCCAGATGCTTCCTCATGTTCCTCCTGTTGATGCTCCTTCTGTGCTTCCTTCTTCTAGGGCTGATACTTTTGACAATGGTAGCACTAGCACAAGCAACCAGGGTCGATTGCCGGGGAGCCACAACGTTTGA
Protein sequence

>MS.gene011858.t1

MDREIIRPCAACKHLHRKCHPSCVLAPYFPKDNLERFAKVHSVFGKRNVTNLLKKLDVSHHEQAVESLVYEADAWLRDPIHGCAGPANDLQGRLNEAQTELKSMKNELAKYLNPQVVEFVLAFPDCFGFKPNASPPTMTVGGGPLGFNQLPAAELTTQQLHNLEVLKQKLLSGPDGDDGLAGFQMDVNVPVGGGSVGGSGGSARFQMGADVPVHDSGLAGSQMLPHVPPVDAPSVLPSSRADTFDNGSTSTSNQGRLPGSHNV