AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011880.t1 MTR_8g479350 90.368 353 23 5 1 352 1 343 0.0 560
MS.gene011880.t1 MTR_2g096740 76.190 63 15 0 73 135 77 139 5.74e-33 124
MS.gene011880.t1 MTR_4g063780 68.354 79 16 1 70 139 72 150 5.87e-33 125
MS.gene011880.t1 MTR_2g096740 76.190 63 15 0 73 135 62 124 5.96e-33 124
MS.gene011880.t1 MTR_7g024670 76.562 64 15 0 74 137 78 141 1.12e-31 122
MS.gene011880.t1 MTR_8g068210 55.556 90 40 0 60 149 19 108 6.10e-31 120
MS.gene011880.t1 MTR_5g031440 92.157 51 4 0 73 123 43 93 8.50e-31 119
MS.gene011880.t1 MTR_4g088580 79.661 59 12 0 74 132 56 114 1.03e-30 120
MS.gene011880.t1 MTR_3g090430 62.025 79 26 1 52 126 26 104 2.56e-30 118
MS.gene011880.t1 MTR_7g059400 78.947 57 12 0 70 126 73 129 3.73e-30 118
MS.gene011880.t1 MTR_8g079060 57.143 84 36 0 65 148 21 104 7.80e-30 114
MS.gene011880.t1 MTR_8g027295 63.158 76 28 0 70 145 21 96 8.15e-30 115
MS.gene011880.t1 MTR_3g091820 62.338 77 29 0 50 126 20 96 1.37e-29 115
MS.gene011880.t1 MTR_4g461080 84.906 53 8 0 73 125 29 81 1.89e-29 114
MS.gene011880.t1 MTR_4g022370 81.481 54 10 0 73 126 82 135 2.10e-29 116
MS.gene011880.t1 MTR_4g109980 86.275 51 7 0 73 123 40 90 3.48e-29 115
MS.gene011880.t1 MTR_8g015840 80.000 55 11 0 70 124 17 71 4.11e-29 112
MS.gene011880.t1 MTR_2g093220 85.185 54 8 0 73 126 40 93 6.44e-29 113
MS.gene011880.t1 MTR_1g056810 81.034 58 11 0 69 126 8 65 2.39e-28 112
MS.gene011880.t1 MTR_2g014060 83.636 55 8 1 70 124 23 76 3.95e-28 112
MS.gene011880.t1 MTR_4g089095 78.947 57 11 1 72 128 49 104 1.26e-27 110
MS.gene011880.t1 MTR_3g077750 78.571 56 9 1 71 123 56 111 1.27e-27 111
MS.gene011880.t1 MTR_4g089095 78.947 57 11 1 72 128 15 70 1.30e-27 109
MS.gene011880.t1 MTR_2g059540 85.714 49 7 0 73 121 31 79 2.74e-27 107
MS.gene011880.t1 MTR_1g077600 72.414 58 16 0 68 125 38 95 9.24e-27 107
MS.gene011880.t1 MTR_1g077600 72.414 58 16 0 68 125 38 95 9.27e-27 107
MS.gene011880.t1 MTR_2g014170 83.673 49 8 0 73 121 45 93 1.04e-26 108
MS.gene011880.t1 MTR_2g016030 50.515 97 42 2 75 171 49 139 2.37e-26 103
MS.gene011880.t1 MTR_2g013370 73.214 56 14 1 73 128 46 100 1.41e-25 104
MS.gene011880.t1 MTR_4g082060 50.000 98 43 2 40 131 83 180 3.35e-25 106
MS.gene011880.t1 MTR_6g012450 75.926 54 13 0 73 126 136 189 3.79e-25 106
MS.gene011880.t1 MTR_7g010950 43.966 116 47 2 30 127 74 189 6.51e-25 105
MS.gene011880.t1 MTR_6g027460 35.955 178 95 4 41 204 60 232 6.86e-25 103
MS.gene011880.t1 MTR_7g086780 57.895 76 32 0 73 148 99 174 7.04e-25 104
MS.gene011880.t1 MTR_5g041420 52.577 97 40 2 44 135 105 200 1.30e-24 102
MS.gene011880.t1 MTR_3g435480 72.222 54 15 0 73 126 136 189 1.82e-24 103
MS.gene011880.t1 MTR_8g044220 56.164 73 32 0 73 145 118 190 2.56e-24 103
MS.gene011880.t1 MTR_6g027450 47.826 92 44 2 41 128 53 144 3.85e-24 101
MS.gene011880.t1 MTR_5g041530 67.188 64 20 1 75 138 142 204 1.30e-23 100
MS.gene011880.t1 MTR_5g041380 47.872 94 47 1 44 135 96 189 1.44e-22 97.8
MS.gene011880.t1 MTR_5g041400 48.936 94 46 1 44 135 88 181 1.46e-22 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011880.t1 AT5G60200 58.416 101 35 3 63 160 42 138 4.45e-33 124
MS.gene011880.t1 AT5G65590 55.102 98 44 0 40 137 8 105 3.34e-32 123
MS.gene011880.t1 AT1G07640 90.566 53 5 0 73 125 21 73 6.45e-32 121
MS.gene011880.t1 AT1G07640 90.566 53 5 0 73 125 77 129 9.61e-32 122
MS.gene011880.t1 AT1G51700 63.750 80 23 1 51 124 5 84 1.24e-31 118
MS.gene011880.t1 AT1G07640 90.566 53 5 0 73 125 85 137 1.25e-31 122
MS.gene011880.t1 AT2G28810 86.538 52 7 0 73 124 77 128 3.85e-31 120
MS.gene011880.t1 AT2G28810 86.538 52 7 0 73 124 94 145 5.68e-31 120
MS.gene011880.t1 AT5G60850 72.222 72 15 1 73 139 51 122 7.15e-31 119
MS.gene011880.t1 AT2G37590 78.947 57 12 0 70 126 86 142 1.18e-30 119
MS.gene011880.t1 AT3G21270 88.679 53 6 0 73 125 29 81 1.21e-30 115
MS.gene011880.t1 AT3G45610 69.697 66 20 0 73 138 40 105 7.82e-30 115
MS.gene011880.t1 AT5G02460 83.333 54 9 0 73 126 95 148 1.46e-29 117
MS.gene011880.t1 AT3G55370 50.467 107 48 2 33 139 83 184 1.87e-29 116
MS.gene011880.t1 AT3G55370 73.134 67 15 1 73 139 76 139 2.00e-29 115
MS.gene011880.t1 AT3G55370 50.467 107 48 2 33 139 38 139 2.01e-29 116
MS.gene011880.t1 AT4G38000 67.105 76 24 1 52 126 20 95 2.47e-29 113
MS.gene011880.t1 AT1G28310 53.125 96 44 1 34 128 11 106 1.13e-28 114
MS.gene011880.t1 AT3G50410 73.016 63 17 0 63 125 20 82 1.32e-28 112
MS.gene011880.t1 AT1G28310 78.571 56 12 0 73 128 27 82 1.71e-28 113
MS.gene011880.t1 AT3G61850 56.383 94 40 1 34 126 22 115 2.05e-28 112
MS.gene011880.t1 AT3G61850 56.383 94 40 1 34 126 22 115 2.05e-28 112
MS.gene011880.t1 AT3G61850 56.383 94 40 1 34 126 34 127 2.16e-28 112
MS.gene011880.t1 AT3G61850 56.383 94 40 1 34 126 22 115 2.96e-28 112
MS.gene011880.t1 AT3G61850 56.383 94 40 1 34 126 34 127 3.16e-28 112
MS.gene011880.t1 AT3G52440 84.615 52 8 0 75 126 27 78 3.31e-28 110
MS.gene011880.t1 AT2G28510 82.692 52 9 0 75 126 50 101 3.52e-28 111
MS.gene011880.t1 AT3G52440 84.615 52 8 0 75 126 46 97 4.17e-28 110
MS.gene011880.t1 AT5G66940 60.274 73 29 0 67 139 26 98 4.59e-28 109
MS.gene011880.t1 AT1G21340 55.056 89 39 1 75 162 40 128 1.31e-27 109
MS.gene011880.t1 AT4G00940 57.471 87 37 0 63 149 58 144 2.27e-27 109
MS.gene011880.t1 AT4G00940 57.471 87 37 0 63 149 58 144 2.27e-27 109
MS.gene011880.t1 AT4G00940 57.471 87 37 0 63 149 58 144 2.27e-27 109
MS.gene011880.t1 AT4G21050 65.625 64 22 0 71 134 22 85 5.54e-27 106
MS.gene011880.t1 AT4G24060 70.968 62 18 0 65 126 45 106 9.54e-27 108
MS.gene011880.t1 AT5G62940 80.000 50 10 0 74 123 74 123 4.19e-26 107
MS.gene011880.t1 AT1G29160 58.667 75 31 0 52 126 41 115 3.24e-25 100
MS.gene011880.t1 AT5G39660 51.402 107 35 1 38 127 86 192 3.26e-25 106
MS.gene011880.t1 AT5G39660 51.402 107 35 1 38 127 86 192 3.26e-25 106
MS.gene011880.t1 AT5G39660 51.402 107 35 1 38 127 86 192 3.26e-25 106
MS.gene011880.t1 AT2G46590 52.809 89 40 1 34 120 27 115 6.02e-25 104
MS.gene011880.t1 AT2G46590 52.809 89 40 1 34 120 39 127 7.06e-25 104
MS.gene011880.t1 AT3G47500 74.545 55 14 0 73 127 110 164 7.42e-25 105
MS.gene011880.t1 AT2G34140 55.263 76 34 0 51 126 36 111 8.77e-25 99.4
MS.gene011880.t1 AT1G69570 55.844 77 34 0 63 139 122 198 1.71e-24 103
MS.gene011880.t1 AT1G64620 71.930 57 16 0 65 121 41 97 1.76e-24 102
MS.gene011880.t1 AT1G26790 45.794 107 51 3 57 160 92 194 3.61e-24 102
MS.gene011880.t1 AT5G62430 74.074 54 14 0 73 126 54 107 4.85e-24 100
MS.gene011880.t1 AT1G47655 61.972 71 23 2 54 121 8 77 1.31e-23 97.4
MS.gene011880.t1 AT4G21040 73.585 53 14 0 75 127 27 79 4.73e-23 96.3
MS.gene011880.t1 AT4G21080 61.538 65 25 0 75 139 27 91 2.46e-22 94.7
MS.gene011880.t1 AT4G21030 56.000 50 22 0 75 124 23 72 1.89e-13 68.6

Find 100 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGATTGTTTCTCCAAAA+TGG 0.139233 8.2:+26590517 None:intergenic
TTCCTCTATATCCAACATTT+TGG 0.175939 8.2:-26590293 MS.gene011880:CDS
TCAGTTACTGGTGGTGAATT+AGG 0.188537 8.2:-26590262 MS.gene011880:CDS
TCCTCCAACTCCTCCATTAA+TGG 0.195655 8.2:+26591152 None:intergenic
GTTATACTTATTACTGATAT+TGG 0.212000 8.2:+26590173 None:intergenic
CATGATTAGGGTTAGGGTTT+TGG 0.228883 8.2:+26590650 None:intergenic
CCTTCTTCCTTAACATGATT+AGG 0.237816 8.2:+26590637 None:intergenic
CACCATTACCAAAGAGTTCT+TGG 0.238413 8.2:+26591214 None:intergenic
TTAGTTTCTGGTACAGTTCT+TGG 0.259576 8.2:+26590416 None:intergenic
CTTCTTCCTTAACATGATTA+GGG 0.273935 8.2:+26590638 None:intergenic
AGAAACTACTCTTCCATTAA+TGG 0.274062 8.2:-26591165 MS.gene011880:CDS
ACAGTTTCTTCAGAGTTTAA+TGG 0.275960 8.2:-26590790 MS.gene011880:CDS
GTGGTGGTTGTTGTGGAAGA+TGG 0.276855 8.2:+26591090 None:intergenic
GCAAGACATGCCGTCGTTAC+TGG 0.280270 8.2:-26590921 MS.gene011880:CDS
TTGGAGACAACTTCAGTTAC+TGG 0.287644 8.2:-26590274 MS.gene011880:CDS
TTGTTGATGACCTTAGTTTC+TGG 0.307492 8.2:+26590404 None:intergenic
GAAGAAGGCAATAACTTCAT+AGG 0.324773 8.2:-26590622 MS.gene011880:CDS
TGGTGCAGTGGTGGTGGTGG+TGG 0.332078 8.2:+26591074 None:intergenic
TTATACTTATTACTGATATT+GGG 0.334867 8.2:+26590174 None:intergenic
CAAAATGGTGGATTTGTACT+TGG 0.338045 8.2:-26590475 MS.gene011880:CDS
CAGTTACTGGTGGTGAATTA+GGG 0.346171 8.2:-26590261 MS.gene011880:CDS
CCTTAACATGATTAGGGTTA+GGG 0.353211 8.2:+26590644 None:intergenic
CAAACTCAACAATTACAAAA+TGG 0.354663 8.2:-26590490 MS.gene011880:CDS
TCCTTAACATGATTAGGGTT+AGG 0.359817 8.2:+26590643 None:intergenic
GACCAAGTTAGTGTTGGAAT+TGG 0.366230 8.2:+26590229 None:intergenic
CCAACACCAACAGTGTTACT+AGG 0.367483 8.2:-26590334 MS.gene011880:CDS
CATGATTGTTTCTCCAAAAT+GGG 0.372690 8.2:+26590518 None:intergenic
CAGAAAACCAACCACATCTA+AGG 0.374661 8.2:-26591020 MS.gene011880:CDS
TTTCCGACAGCCACCTCCTA+TGG 0.383757 8.2:+26590870 None:intergenic
GACGGCATGTCTTGCAGAAA+TGG 0.400957 8.2:+26590929 None:intergenic
CACCACAAAGTCAAATCCTC+TGG 0.406936 8.2:-26590723 MS.gene011880:CDS
GAAGAAGGAGGTTGTGTTGT+TGG 0.410788 8.2:+26591117 None:intergenic
TGGTGGTTGTTGTGGAAGAT+GGG 0.417872 8.2:+26591091 None:intergenic
CCCTAACCCTAATCATGTTA+AGG 0.421766 8.2:-26590644 MS.gene011880:CDS
CCCCAGAGGATTTGACTTTG+TGG 0.425921 8.2:+26590721 None:intergenic
TGCGGTGGTGGTTGTGGTGA+CGG 0.433800 8.2:+26591047 None:intergenic
CTCCAAAATGTTGGATATAG+AGG 0.436023 8.2:+26590291 None:intergenic
CAGCCGTTGATTTCGTCAAA+TGG 0.436916 8.2:-26590571 MS.gene011880:CDS
TCCATTAATGGAGGAGTTGG+AGG 0.440892 8.2:-26591153 MS.gene011880:CDS
CCTAATCATGTTAAGGAAGA+AGG 0.447706 8.2:-26590637 MS.gene011880:CDS
GTGGTTGTGGTGACGGTGGT+TGG 0.448495 8.2:+26591054 None:intergenic
GGACAAAAGGAGGTGCTTTG+AGG 0.473653 8.2:-26590900 MS.gene011880:CDS
ATCCAATTCCAACACTAACT+TGG 0.474024 8.2:-26590231 MS.gene011880:CDS
GGTGGTTGGTGCAGTGGTGG+TGG 0.475125 8.2:+26591068 None:intergenic
AAGATGATCCAAGAACTCTT+TGG 0.477513 8.2:-26591222 MS.gene011880:CDS
TGCCGTCGTTACTGGACAAA+AGG 0.477938 8.2:-26590913 MS.gene011880:CDS
AAAATGGTGGATTTGTACTT+GGG 0.478306 8.2:-26590474 MS.gene011880:CDS
ATTTCGTCAAATGGTTATGA+TGG 0.478918 8.2:-26590562 MS.gene011880:CDS
TGATGATGCGGTGGTGGTTG+TGG 0.481556 8.2:+26591041 None:intergenic
TCTTCCATTAATGGAGGAGT+TGG 0.482425 8.2:-26591156 MS.gene011880:CDS
GGTTGGTGCAGTGGTGGTGG+TGG 0.494544 8.2:+26591071 None:intergenic
AAGAACTGTACCAGAAACTA+AGG 0.497513 8.2:-26590414 MS.gene011880:CDS
CTGGTGGTGAATTAGGGTAC+TGG 0.503929 8.2:-26590255 MS.gene011880:CDS
TTGGGTTTGAATTGCACCAT+TGG 0.506743 8.2:+26590192 None:intergenic
TCAACAACATCATCATCATC+AGG 0.508236 8.2:-26590388 MS.gene011880:CDS
GTGTTTGATGAGTCACATCT+TGG 0.511366 8.2:+26590994 None:intergenic
GTGGAAGATGGGCGTGAAGA+AGG 0.511865 8.2:+26591102 None:intergenic
ATCCAAGAACTCTTTGGTAA+TGG 0.516650 8.2:-26591216 MS.gene011880:CDS
TTGGACACCTTAGATGTGGT+TGG 0.518935 8.2:+26591013 None:intergenic
GACGGTGGTTGGTGCAGTGG+TGG 0.519460 8.2:+26591065 None:intergenic
TGAAGTTGTCTCCAAAATGT+TGG 0.525052 8.2:+26590282 None:intergenic
TGAATTGCACCATTGGTAGT+TGG 0.526899 8.2:+26590199 None:intergenic
ACCACAAAGTCAAATCCTCT+GGG 0.532491 8.2:-26590722 MS.gene011880:CDS
AAGAAGGCAATAACTTCATA+GGG 0.534937 8.2:-26590621 MS.gene011880:CDS
TTCCGACAGCCACCTCCTAT+GGG 0.538444 8.2:+26590871 None:intergenic
CCTAGTAACACTGTTGGTGT+TGG 0.540794 8.2:+26590334 None:intergenic
GGAAGGTCAACAAGTGGTCA+AGG 0.546021 8.2:-26590769 MS.gene011880:CDS
GTTTCTTTCACTTGAAGTGA+GGG 0.555832 8.2:+26591182 None:intergenic
GGTGACGGTGGTTGGTGCAG+TGG 0.560684 8.2:+26591062 None:intergenic
TTGAGGAACGTTCCCATAGG+AGG 0.560915 8.2:-26590883 MS.gene011880:CDS
CAGAGGATTTGACTTTGTGG+TGG 0.563970 8.2:+26590724 None:intergenic
AGGAACGTTCCCATAGGAGG+TGG 0.565496 8.2:-26590880 MS.gene011880:CDS
AGATCAGACCAAGTTAGTGT+TGG 0.571260 8.2:+26590223 None:intergenic
TCAAATGGTTATGATGGTGT+TGG 0.575378 8.2:-26590556 MS.gene011880:CDS
AGTTTCTTTCACTTGAAGTG+AGG 0.580149 8.2:+26591181 None:intergenic
CAACACCAACAGTGTTACTA+GGG 0.580552 8.2:-26590333 MS.gene011880:CDS
AAATGGTGGATTTGTACTTG+GGG 0.583095 8.2:-26590473 MS.gene011880:CDS
TTCCCATAGGAGGTGGCTGT+CGG 0.589355 8.2:-26590873 MS.gene011880:CDS
ACTCAACAATTACAAAATGG+TGG 0.590751 8.2:-26590487 MS.gene011880:CDS
TCTGATCTTCCAACTACCAA+TGG 0.595789 8.2:-26590208 MS.gene011880:CDS
TTTCTTCAGAGTTTAATGGA+AGG 0.603721 8.2:-26590786 MS.gene011880:CDS
AACTCATCATGTGAGAAACA+TGG 0.610751 8.2:+26590596 None:intergenic
GAAGGTCAACAAGTGGTCAA+GGG 0.612566 8.2:-26590768 MS.gene011880:CDS
CGTCGTTACTGGACAAAAGG+AGG 0.618133 8.2:-26590910 MS.gene011880:CDS
GCTTTGAGGAACGTTCCCAT+AGG 0.619952 8.2:-26590886 MS.gene011880:CDS
GAAGATGGGCGTGAAGAAGG+AGG 0.621383 8.2:+26591105 None:intergenic
CATCTTGGACACCTTAGATG+TGG 0.628308 8.2:+26591009 None:intergenic
AACTACTCTTCCATTAATGG+AGG 0.630490 8.2:-26591162 MS.gene011880:CDS
TAACCATTTGACGAAATCAA+CGG 0.644257 8.2:+26590568 None:intergenic
GAGACAACTTCAGTTACTGG+TGG 0.647714 8.2:-26590271 MS.gene011880:CDS
CATGTCTTGCAGAAATGGCG+AGG 0.648175 8.2:+26590934 None:intergenic
CATCACCATCATCAAAACAG+TGG 0.654071 8.2:-26590442 MS.gene011880:CDS
ACTCATCATGTGAGAAACAT+GGG 0.656250 8.2:+26590597 None:intergenic
GGTGGTGGTTGTGGTGACGG+TGG 0.663797 8.2:+26591050 None:intergenic
TTTAATGGAAGGTCAACAAG+TGG 0.666542 8.2:-26590775 MS.gene011880:CDS
AACAGTGTTACTAGGGAACG+TGG 0.681785 8.2:-26590326 MS.gene011880:CDS
ACGTTCCCTAGTAACACTGT+TGG 0.689714 8.2:+26590328 None:intergenic
AGAAATGGCGAGGCTGAGTG+AGG 0.701300 8.2:+26590944 None:intergenic
TATCAACGCCTCAAATAGCG+CGG 0.706731 8.2:-26590839 MS.gene011880:CDS
CCACAAAGTCAAATCCTCTG+GGG 0.739195 8.2:-26590721 MS.gene011880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CAAACTCAACAATTACAAAA+TGG - chr8.2:26590912-26590931 MS.gene011880:CDS 25.0%
!!! GAAAGTATATGAGAATTTTG+AGG + chr8.2:26590711-26590730 None:intergenic 25.0%
AAGAAGGCAATAACTTCATA+GGG - chr8.2:26590781-26590800 MS.gene011880:CDS 30.0%
ACAGTTTCTTCAGAGTTTAA+TGG - chr8.2:26590612-26590631 MS.gene011880:CDS 30.0%
ACTCAACAATTACAAAATGG+TGG - chr8.2:26590915-26590934 MS.gene011880:CDS 30.0%
AGAAACTACTCTTCCATTAA+TGG - chr8.2:26590237-26590256 MS.gene011880:CDS 30.0%
ATTTCGTCAAATGGTTATGA+TGG - chr8.2:26590840-26590859 MS.gene011880:CDS 30.0%
CTTCTTCCTTAACATGATTA+GGG + chr8.2:26590767-26590786 None:intergenic 30.0%
TAACCATTTGACGAAATCAA+CGG + chr8.2:26590837-26590856 None:intergenic 30.0%
TTTCTTCAGAGTTTAATGGA+AGG - chr8.2:26590616-26590635 MS.gene011880:CDS 30.0%
! ATGTTTTATGCAACCCATTT+TGG - chr8.2:26590871-26590890 MS.gene011880:CDS 30.0%
! CATGATTGTTTCTCCAAAAT+GGG + chr8.2:26590887-26590906 None:intergenic 30.0%
! TCATGATTGTTTCTCCAAAA+TGG + chr8.2:26590888-26590907 None:intergenic 30.0%
! TTCCTCTATATCCAACATTT+TGG - chr8.2:26591109-26591128 MS.gene011880:CDS 30.0%
!! AAAATGGTGGATTTGTACTT+GGG - chr8.2:26590928-26590947 MS.gene011880:CDS 30.0%
AACTACTCTTCCATTAATGG+AGG - chr8.2:26590240-26590259 MS.gene011880:CDS 35.0%
AACTCATCATGTGAGAAACA+TGG + chr8.2:26590809-26590828 None:intergenic 35.0%
AAGAACTGTACCAGAAACTA+AGG - chr8.2:26590988-26591007 MS.gene011880:CDS 35.0%
ACTCATCATGTGAGAAACAT+GGG + chr8.2:26590808-26590827 None:intergenic 35.0%
AGTTTCTTTCACTTGAAGTG+AGG + chr8.2:26590224-26590243 None:intergenic 35.0%
ATCCAAGAACTCTTTGGTAA+TGG - chr8.2:26590186-26590205 MS.gene011880:CDS 35.0%
ATCCAATTCCAACACTAACT+TGG - chr8.2:26591171-26591190 MS.gene011880:CDS 35.0%
CCTAATCATGTTAAGGAAGA+AGG - chr8.2:26590765-26590784 MS.gene011880:CDS 35.0%
CCTTAACATGATTAGGGTTA+GGG + chr8.2:26590761-26590780 None:intergenic 35.0%
CCTTCTTCCTTAACATGATT+AGG + chr8.2:26590768-26590787 None:intergenic 35.0%
CTCCAAAATGTTGGATATAG+AGG + chr8.2:26591114-26591133 None:intergenic 35.0%
GAAGAAGGCAATAACTTCAT+AGG - chr8.2:26590780-26590799 MS.gene011880:CDS 35.0%
GTTTCTTTCACTTGAAGTGA+GGG + chr8.2:26590223-26590242 None:intergenic 35.0%
TCAACAACATCATCATCATC+AGG - chr8.2:26591014-26591033 MS.gene011880:CDS 35.0%
TCCTTAACATGATTAGGGTT+AGG + chr8.2:26590762-26590781 None:intergenic 35.0%
TGAAGTTGTCTCCAAAATGT+TGG + chr8.2:26591123-26591142 None:intergenic 35.0%
TTTAATGGAAGGTCAACAAG+TGG - chr8.2:26590627-26590646 MS.gene011880:CDS 35.0%
! TCAAATGGTTATGATGGTGT+TGG - chr8.2:26590846-26590865 MS.gene011880:CDS 35.0%
!! AAATGGTGGATTTGTACTTG+GGG - chr8.2:26590929-26590948 MS.gene011880:CDS 35.0%
!! CAAAATGGTGGATTTGTACT+TGG - chr8.2:26590927-26590946 MS.gene011880:CDS 35.0%
!! TTAGTTTCTGGTACAGTTCT+TGG + chr8.2:26590989-26591008 None:intergenic 35.0%
!! TTGTTGATGACCTTAGTTTC+TGG + chr8.2:26591001-26591020 None:intergenic 35.0%
ACCACAAAGTCAAATCCTCT+GGG - chr8.2:26590680-26590699 MS.gene011880:CDS 40.0%
AGATCAGACCAAGTTAGTGT+TGG + chr8.2:26591182-26591201 None:intergenic 40.0%
CACCATTACCAAAGAGTTCT+TGG + chr8.2:26590191-26590210 None:intergenic 40.0%
CAGAAAACCAACCACATCTA+AGG - chr8.2:26590382-26590401 MS.gene011880:CDS 40.0%
CATCACCATCATCAAAACAG+TGG - chr8.2:26590960-26590979 MS.gene011880:CDS 40.0%
CCCTAACCCTAATCATGTTA+AGG - chr8.2:26590758-26590777 MS.gene011880:CDS 40.0%
GTGTTTGATGAGTCACATCT+TGG + chr8.2:26590411-26590430 None:intergenic 40.0%
TCTGATCTTCCAACTACCAA+TGG - chr8.2:26591194-26591213 MS.gene011880:CDS 40.0%
TCTTCCATTAATGGAGGAGT+TGG - chr8.2:26590246-26590265 MS.gene011880:CDS 40.0%
TTGGAGACAACTTCAGTTAC+TGG - chr8.2:26591128-26591147 MS.gene011880:CDS 40.0%
TTGGGTTTGAATTGCACCAT+TGG + chr8.2:26591213-26591232 None:intergenic 40.0%
! CAACACCAACAGTGTTACTA+GGG - chr8.2:26591069-26591088 MS.gene011880:CDS 40.0%
! CAGTTACTGGTGGTGAATTA+GGG - chr8.2:26591141-26591160 MS.gene011880:CDS 40.0%
! CATGATTAGGGTTAGGGTTT+TGG + chr8.2:26590755-26590774 None:intergenic 40.0%
! GACCAAGTTAGTGTTGGAAT+TGG + chr8.2:26591176-26591195 None:intergenic 40.0%
! TCAGTTACTGGTGGTGAATT+AGG - chr8.2:26591140-26591159 MS.gene011880:CDS 40.0%
! TGAATTGCACCATTGGTAGT+TGG + chr8.2:26591206-26591225 None:intergenic 40.0%
!!! GGATTCCACTGTTTTGATGA+TGG + chr8.2:26590968-26590987 None:intergenic 40.0%
!!! TGGTTGGTTTTCTGATGATG+CGG + chr8.2:26590376-26590395 None:intergenic 40.0%
ACGTTCCCTAGTAACACTGT+TGG + chr8.2:26591077-26591096 None:intergenic 45.0%
CACCACAAAGTCAAATCCTC+TGG - chr8.2:26590679-26590698 MS.gene011880:CDS 45.0%
CATCTTGGACACCTTAGATG+TGG + chr8.2:26590396-26590415 None:intergenic 45.0%
CCACAAAGTCAAATCCTCTG+GGG - chr8.2:26590681-26590700 MS.gene011880:CDS 45.0%
CCTAGTAACACTGTTGGTGT+TGG + chr8.2:26591071-26591090 None:intergenic 45.0%
GAAGAAGGAGGTTGTGTTGT+TGG + chr8.2:26590288-26590307 None:intergenic 45.0%
GAAGGTCAACAAGTGGTCAA+GGG - chr8.2:26590634-26590653 MS.gene011880:CDS 45.0%
GAGACAACTTCAGTTACTGG+TGG - chr8.2:26591131-26591150 MS.gene011880:CDS 45.0%
TATCAACGCCTCAAATAGCG+CGG - chr8.2:26590563-26590582 MS.gene011880:CDS 45.0%
TCCATTAATGGAGGAGTTGG+AGG - chr8.2:26590249-26590268 MS.gene011880:CDS 45.0%
TCCTCCAACTCCTCCATTAA+TGG + chr8.2:26590253-26590272 None:intergenic 45.0%
TGGTGGTTGTTGTGGAAGAT+GGG + chr8.2:26590314-26590333 None:intergenic 45.0%
TTGGACACCTTAGATGTGGT+TGG + chr8.2:26590392-26590411 None:intergenic 45.0%
! AACAGTGTTACTAGGGAACG+TGG - chr8.2:26591076-26591095 MS.gene011880:CDS 45.0%
! CAGAGGATTTGACTTTGTGG+TGG + chr8.2:26590681-26590700 None:intergenic 45.0%
! CCAACACCAACAGTGTTACT+AGG - chr8.2:26591068-26591087 MS.gene011880:CDS 45.0%
! CTCCTTTTGTCCAGTAACGA+CGG + chr8.2:26590494-26590513 None:intergenic 45.0%
!! AATTTTGAGGAGAACCCCAG+AGG + chr8.2:26590698-26590717 None:intergenic 45.0%
!! CAGCCGTTGATTTCGTCAAA+TGG - chr8.2:26590831-26590850 MS.gene011880:CDS 45.0%
!! TGTTTTTGCCGCGCTATTTG+AGG + chr8.2:26590574-26590593 None:intergenic 45.0%
!! TTGGTTTTCTGATGATGCGG+TGG + chr8.2:26590373-26590392 None:intergenic 45.0%
CATGTCTTGCAGAAATGGCG+AGG + chr8.2:26590471-26590490 None:intergenic 50.0%
CGTCGTTACTGGACAAAAGG+AGG - chr8.2:26590492-26590511 MS.gene011880:CDS 50.0%
GACGGCATGTCTTGCAGAAA+TGG + chr8.2:26590476-26590495 None:intergenic 50.0%
GGAAGGTCAACAAGTGGTCA+AGG - chr8.2:26590633-26590652 MS.gene011880:CDS 50.0%
GTGGTGGTTGTTGTGGAAGA+TGG + chr8.2:26590315-26590334 None:intergenic 50.0%
TGCCGTCGTTACTGGACAAA+AGG - chr8.2:26590489-26590508 MS.gene011880:CDS 50.0%
TTGAGGAACGTTCCCATAGG+AGG - chr8.2:26590519-26590538 MS.gene011880:CDS 50.0%
! CCCCAGAGGATTTGACTTTG+TGG + chr8.2:26590684-26590703 None:intergenic 50.0%
! CTGGTGGTGAATTAGGGTAC+TGG - chr8.2:26591147-26591166 MS.gene011880:CDS 50.0%
!! GCTTTGAGGAACGTTCCCAT+AGG - chr8.2:26590516-26590535 MS.gene011880:CDS 50.0%
!! GGACAAAAGGAGGTGCTTTG+AGG - chr8.2:26590502-26590521 MS.gene011880:CDS 50.0%
!! GTTTTCTGATGATGCGGTGG+TGG + chr8.2:26590370-26590389 None:intergenic 50.0%
AGAAATGGCGAGGCTGAGTG+AGG + chr8.2:26590461-26590480 None:intergenic 55.0%
AGGAACGTTCCCATAGGAGG+TGG - chr8.2:26590522-26590541 MS.gene011880:CDS 55.0%
GAAGATGGGCGTGAAGAAGG+AGG + chr8.2:26590300-26590319 None:intergenic 55.0%
GCAAGACATGCCGTCGTTAC+TGG - chr8.2:26590481-26590500 MS.gene011880:CDS 55.0%
GTGGAAGATGGGCGTGAAGA+AGG + chr8.2:26590303-26590322 None:intergenic 55.0%
TTCCCATAGGAGGTGGCTGT+CGG - chr8.2:26590529-26590548 MS.gene011880:CDS 55.0%
TTCCGACAGCCACCTCCTAT+GGG + chr8.2:26590534-26590553 None:intergenic 55.0%
TTTCCGACAGCCACCTCCTA+TGG + chr8.2:26590535-26590554 None:intergenic 55.0%
! TGATGATGCGGTGGTGGTTG+TGG + chr8.2:26590364-26590383 None:intergenic 55.0%
! TGCGGTGGTGGTTGTGGTGA+CGG + chr8.2:26590358-26590377 None:intergenic 60.0%
!! GGTGGTGGTGGTGGTTGTTG+TGG + chr8.2:26590322-26590341 None:intergenic 60.0%
!! GTGGTTGTGGTGACGGTGGT+TGG + chr8.2:26590351-26590370 None:intergenic 60.0%
! GACGGTGGTTGGTGCAGTGG+TGG + chr8.2:26590340-26590359 None:intergenic 65.0%
! GGTGACGGTGGTTGGTGCAG+TGG + chr8.2:26590343-26590362 None:intergenic 65.0%
! GGTGGTTGGTGCAGTGGTGG+TGG + chr8.2:26590337-26590356 None:intergenic 65.0%
!! GGTGGTGGTTGTGGTGACGG+TGG + chr8.2:26590355-26590374 None:intergenic 65.0%
!! GGTTGGTGCAGTGGTGGTGG+TGG + chr8.2:26590334-26590353 None:intergenic 65.0%
!! TGGTGCAGTGGTGGTGGTGG+TGG + chr8.2:26590331-26590350 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 26590183 26591241 26590183 ID=MS.gene011880
chr8.2 mRNA 26590183 26591241 26590183 ID=MS.gene011880.t1;Parent=MS.gene011880
chr8.2 exon 26590183 26591241 26590183 ID=MS.gene011880.t1.exon1;Parent=MS.gene011880.t1
chr8.2 CDS 26590183 26591241 26590183 ID=cds.MS.gene011880.t1;Parent=MS.gene011880.t1
Gene Sequence

>MS.gene011880

ATGATCCAAGAACTCTTTGGTAATGGTGCTAGTGCTACCCTCACTTCAAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGTTGGAGGAGTTTTACTTCAACCAACAACACAACCTCCTTCTTCACGCCCATCTTCCACAACAACCACCACCACCACCACTGCACCAACCACCGTCACCACAACCACCACCGCATCATCAGAAAACCAACCACATCTAAGGTGTCCAAGATGTGACTCATCAAACACAAAATTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAGACATGCCGTCGTTACTGGACAAAAGGAGGTGCTTTGAGGAACGTTCCCATAGGAGGTGGCTGTCGGAAAAACAAGAGTATCAACGCCTCAAATAGCGCGGCAAAAACAACTACAAACAAGATGAAAACAGTTTCTTCAGAGTTTAATGGAAGGTCAACAAGTGGTCAAGGGTTTGATCTCGAACACGTTGTTCCACCACAAAGTCAAATCCTCTGGGGTTCTCCTCAAAATTCTCATATACTTTCATTGCTAAGATCTAGTCAAAACCAAAACCCTAACCCTAATCATGTTAAGGAAGAAGGCAATAACTTCATAGGGTCCCATGTTTCTCACATGATGAGTTCTCAGCCGTTGATTTCGTCAAATGGTTATGATGGTGTTGGACATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAATTACAAAATGGTGGATTTGTACTTGGGGATCAACAACATCACCATCATCAAAACAGTGGAATCCAAGAACTGTACCAGAAACTAAGGTCATCAACAACATCATCATCATCAGGTAATAATTATTGCAGTGAGATTTCATCTTCACCAACACCAACAGTGTTACTAGGGAACGTGGCTTCAAACTCTTCCTCTATATCCAACATTTTGGAGACAACTTCAGTTACTGGTGGTGAATTAGGGTACTGGAATCCAATTCCAACACTAACTTGGTCTGATCTTCCAACTACCAATGGTGCAATTCAAACCCAATATCAGTAA
Protein sequence

>MS.gene011880.t1

MIQELFGNGASATLTSSERNYSSINGGVGGVLLQPTTQPPSSRPSSTTTTTTTTAPTTVTTTTTASSENQPHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSINASNSAAKTTTNKMKTVSSEFNGRSTSGQGFDLEHVVPPQSQILWGSPQNSHILSLLRSSQNQNPNPNHVKEEGNNFIGSHVSHMMSSQPLISSNGYDGVGHVLCNPFWRNNHDNQTQQLQNGGFVLGDQQHHHHQNSGIQELYQKLRSSTTSSSSGNNYCSEISSSPTPTVLLGNVASNSSSISNILETTSVTGGELGYWNPIPTLTWSDLPTTNGAIQTQYQ