AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011887

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011887.t1 MTR_8g079060 86.420 243 19 5 1 243 1 229 1.92e-122 347
MS.gene011887.t1 MTR_8g015840 74.286 70 17 1 17 85 7 76 5.92e-32 117
MS.gene011887.t1 MTR_4g063780 54.717 106 35 3 17 109 54 159 1.04e-30 116
MS.gene011887.t1 MTR_2g096740 64.000 75 27 0 22 96 55 129 1.06e-30 115
MS.gene011887.t1 MTR_2g096740 64.000 75 27 0 22 96 70 144 1.29e-30 115
MS.gene011887.t1 MTR_8g027295 43.511 131 72 1 23 153 18 146 5.91e-30 113
MS.gene011887.t1 MTR_4g088580 61.842 76 29 0 31 106 57 132 6.12e-30 115
MS.gene011887.t1 MTR_4g461080 61.728 81 23 1 1 81 9 81 3.92e-29 110
MS.gene011887.t1 MTR_4g022370 40.541 185 86 6 17 191 61 231 4.64e-29 112
MS.gene011887.t1 MTR_2g093220 68.056 72 22 1 12 83 24 94 5.02e-29 111
MS.gene011887.t1 MTR_8g479350 58.228 79 33 0 26 104 65 143 5.66e-29 112
MS.gene011887.t1 MTR_7g059400 44.156 154 53 4 17 142 55 203 8.11e-29 111
MS.gene011887.t1 MTR_7g024670 73.770 61 16 0 31 91 79 139 4.17e-28 110
MS.gene011887.t1 MTR_1g077600 62.857 70 26 0 14 83 28 97 5.70e-28 108
MS.gene011887.t1 MTR_1g077600 62.857 70 26 0 14 83 28 97 6.28e-28 107
MS.gene011887.t1 MTR_3g091820 70.588 68 18 2 18 85 33 98 9.85e-28 107
MS.gene011887.t1 MTR_4g089095 75.000 60 14 1 27 86 48 106 3.33e-27 106
MS.gene011887.t1 MTR_4g089095 78.947 57 11 1 27 83 14 69 4.49e-27 105
MS.gene011887.t1 MTR_3g435480 54.023 87 39 1 29 114 136 222 5.44e-27 108
MS.gene011887.t1 MTR_5g031440 71.429 56 16 0 24 79 38 93 1.27e-26 105
MS.gene011887.t1 MTR_8g068210 54.321 81 34 1 29 109 32 109 1.40e-26 105
MS.gene011887.t1 MTR_2g013370 75.439 57 13 1 27 83 44 99 3.23e-26 103
MS.gene011887.t1 MTR_2g014170 83.673 49 8 0 29 77 45 93 5.58e-26 103
MS.gene011887.t1 MTR_3g077750 70.312 64 15 1 16 79 52 111 6.20e-26 103
MS.gene011887.t1 MTR_4g109980 79.245 53 11 0 27 79 38 90 6.88e-26 103
MS.gene011887.t1 MTR_7g010950 38.065 155 72 4 29 179 135 269 7.20e-26 105
MS.gene011887.t1 MTR_2g014060 61.972 71 23 1 10 80 10 76 8.44e-26 103
MS.gene011887.t1 MTR_4g082060 63.934 61 22 0 29 89 122 182 4.84e-25 102
MS.gene011887.t1 MTR_3g090430 47.748 111 45 2 2 112 34 131 5.10e-25 101
MS.gene011887.t1 MTR_2g059540 81.633 49 9 0 29 77 31 79 5.95e-25 98.2
MS.gene011887.t1 MTR_6g012450 37.662 154 77 5 29 177 136 275 9.36e-25 102
MS.gene011887.t1 MTR_2g016030 67.273 55 18 0 26 80 44 98 1.67e-24 95.9
MS.gene011887.t1 MTR_8g044220 62.500 64 23 1 29 92 118 180 3.65e-24 100
MS.gene011887.t1 MTR_5g041420 63.934 61 22 0 21 81 130 190 4.16e-24 98.6
MS.gene011887.t1 MTR_1g056810 51.163 86 36 2 31 110 14 99 4.56e-24 97.8
MS.gene011887.t1 MTR_6g027460 40.769 130 71 3 29 155 96 222 5.69e-24 99.0
MS.gene011887.t1 MTR_7g086780 39.655 116 63 2 31 139 101 216 8.48e-24 99.0
MS.gene011887.t1 MTR_5g041380 73.585 53 14 0 29 81 127 179 4.20e-23 96.7
MS.gene011887.t1 MTR_5g041400 73.585 53 14 0 29 81 119 171 5.32e-23 96.3
MS.gene011887.t1 MTR_6g027450 56.716 67 28 1 29 94 89 155 9.32e-23 95.1
MS.gene011887.t1 MTR_5g041530 62.295 61 23 0 21 81 132 192 1.78e-22 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011887.t1 AT3G50410 47.909 263 107 9 1 243 1 253 2.99e-58 185
MS.gene011887.t1 AT5G66940 46.581 234 97 9 4 224 3 221 3.74e-50 164
MS.gene011887.t1 AT1G51700 66.279 86 25 1 24 109 28 109 3.48e-35 124
MS.gene011887.t1 AT5G60850 66.265 83 25 2 27 109 49 128 9.46e-32 118
MS.gene011887.t1 AT3G21270 46.617 133 56 4 29 153 29 154 2.72e-31 114
MS.gene011887.t1 AT5G60200 63.636 88 24 2 22 109 48 127 7.50e-31 115
MS.gene011887.t1 AT3G45610 52.294 109 43 2 2 110 13 112 8.98e-31 114
MS.gene011887.t1 AT1G47655 39.149 235 107 6 11 243 9 209 1.62e-29 110
MS.gene011887.t1 AT3G55370 63.514 74 25 2 21 93 114 186 2.20e-28 110
MS.gene011887.t1 AT1G07640 74.138 58 15 0 29 86 21 78 2.35e-28 108
MS.gene011887.t1 AT3G55370 63.514 74 25 2 21 93 69 141 3.02e-28 109
MS.gene011887.t1 AT5G65590 72.131 61 17 0 23 83 35 95 3.09e-28 109
MS.gene011887.t1 AT3G55370 63.514 74 25 2 21 93 69 141 3.12e-28 110
MS.gene011887.t1 AT1G07640 74.138 58 15 0 29 86 77 134 4.38e-28 109
MS.gene011887.t1 AT1G07640 74.138 58 15 0 29 86 85 142 5.25e-28 109
MS.gene011887.t1 AT1G28310 75.862 58 14 0 29 86 27 84 6.71e-28 108
MS.gene011887.t1 AT5G62430 63.158 76 27 1 29 103 54 129 8.56e-28 108
MS.gene011887.t1 AT1G28310 75.862 58 14 0 29 86 51 108 9.06e-28 108
MS.gene011887.t1 AT3G47500 40.741 135 64 3 1 121 84 216 2.83e-27 108
MS.gene011887.t1 AT4G38000 47.581 124 58 4 10 130 19 138 2.99e-27 105
MS.gene011887.t1 AT3G61850 70.769 65 18 1 23 87 56 119 3.02e-27 106
MS.gene011887.t1 AT3G61850 70.769 65 18 1 23 87 56 119 3.02e-27 106
MS.gene011887.t1 AT5G39660 56.098 82 34 1 29 108 138 219 3.21e-27 108
MS.gene011887.t1 AT5G39660 56.098 82 34 1 29 108 138 219 3.21e-27 108
MS.gene011887.t1 AT5G39660 56.098 82 34 1 29 108 138 219 3.21e-27 108
MS.gene011887.t1 AT4G24060 52.083 96 43 2 18 111 43 137 3.75e-27 107
MS.gene011887.t1 AT3G61850 70.769 65 18 1 23 87 68 131 3.90e-27 106
MS.gene011887.t1 AT5G02460 63.636 77 17 2 17 83 74 149 3.93e-27 108
MS.gene011887.t1 AT3G61850 70.769 65 18 1 23 87 56 119 4.96e-27 106
MS.gene011887.t1 AT3G61850 70.769 65 18 1 23 87 68 131 5.41e-27 106
MS.gene011887.t1 AT2G28810 73.684 57 15 0 24 80 72 128 8.83e-27 105
MS.gene011887.t1 AT2G28810 73.684 57 15 0 24 80 89 145 1.20e-26 105
MS.gene011887.t1 AT2G28510 38.690 168 66 4 31 163 50 215 1.49e-26 104
MS.gene011887.t1 AT2G37590 59.722 72 29 0 12 83 72 143 4.54e-26 103
MS.gene011887.t1 AT4G21050 64.179 67 23 1 31 97 26 91 1.60e-25 100
MS.gene011887.t1 AT1G21340 64.706 68 21 1 25 89 31 98 2.12e-25 100
MS.gene011887.t1 AT4G00940 70.690 58 17 0 26 83 65 122 4.02e-25 100
MS.gene011887.t1 AT4G00940 70.690 58 17 0 26 83 65 122 4.02e-25 100
MS.gene011887.t1 AT4G00940 70.690 58 17 0 26 83 65 122 4.02e-25 100
MS.gene011887.t1 AT5G62940 67.188 64 17 1 16 79 64 123 1.15e-24 100
MS.gene011887.t1 AT3G52440 63.636 66 24 0 18 83 14 79 1.21e-24 98.6
MS.gene011887.t1 AT1G26790 60.000 70 27 1 29 97 111 180 1.44e-24 100
MS.gene011887.t1 AT3G52440 63.636 66 24 0 18 83 33 98 1.64e-24 98.6
MS.gene011887.t1 AT2G46590 74.074 54 14 0 23 76 62 115 1.73e-24 100
MS.gene011887.t1 AT2G46590 74.074 54 14 0 23 76 74 127 1.84e-24 100
MS.gene011887.t1 AT1G29160 69.811 53 16 0 29 81 62 114 3.65e-24 95.5
MS.gene011887.t1 AT4G21040 62.687 67 23 1 31 97 27 91 6.06e-24 96.3
MS.gene011887.t1 AT1G69570 69.811 53 16 0 29 81 132 184 6.72e-24 99.0
MS.gene011887.t1 AT4G21080 64.179 67 22 1 31 97 27 91 2.07e-23 95.1
MS.gene011887.t1 AT1G64620 60.811 74 20 2 14 78 25 98 3.82e-23 96.7
MS.gene011887.t1 AT2G34140 67.925 53 17 0 29 81 58 110 6.98e-23 92.0
MS.gene011887.t1 AT4G21030 60.000 50 20 0 31 80 23 72 1.97e-13 67.4

Find 90 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCAAAACTCTGGGTTTC+TGG 0.121250 8.2:+26699595 MS.gene011887:CDS
TTCTGGCATTAGGTGGATTT+GGG 0.223026 8.2:+26699612 MS.gene011887:CDS
CCGTCAATACCGCCGGAAAA+TGG 0.237022 8.2:-26699509 None:intergenic
GGTGTTCCTGTTGTGTCTTC+TGG 0.239637 8.2:+26699725 MS.gene011887:CDS
TTTCTGGCATTAGGTGGATT+TGG 0.249923 8.2:+26699611 MS.gene011887:CDS
CATTAGGTGGATTTGGGCTT+GGG 0.256673 8.2:+26699618 MS.gene011887:CDS
GCATTAGGTGGATTTGGGCT+TGG 0.292718 8.2:+26699617 MS.gene011887:CDS
GGTGGATTTGGGCTTGGGCT+TGG 0.292816 8.2:+26699623 MS.gene011887:CDS
GCCATTTCAACACCAGTAAA+TGG 0.297810 8.2:+26699830 MS.gene011887:CDS
TCCTCCTTGGACGGCGGCGA+TGG 0.309760 8.2:-26699477 None:intergenic
TTGGGCTTGGGCTTGGACAC+GGG 0.315488 8.2:+26699630 MS.gene011887:CDS
GCAAAGCTTGTCGCCGCTAC+TGG 0.340843 8.2:+26699297 MS.gene011887:CDS
TTTGATCCATCCACCATTCC+TGG 0.347481 8.2:-26699698 None:intergenic
GTTGTGTCTTCTGGTGTTGT+TGG 0.348865 8.2:+26699734 MS.gene011887:CDS
AAGAAATGGGCTTTGGGATT+GGG 0.351153 8.2:+26699657 MS.gene011887:CDS
TGCTCCGGTGCCGGTGCACC+GGG 0.353622 8.2:-26699185 None:intergenic
TGGGATTGGGAGAACAGGTT+GGG 0.361604 8.2:+26699670 MS.gene011887:CDS
GGCTTGAAGAAATGGGCTTT+GGG 0.362503 8.2:+26699651 MS.gene011887:CDS
GGGCTTGAAGAAATGGGCTT+TGG 0.362537 8.2:+26699650 MS.gene011887:CDS
TGGACACGGGCTTGAAGAAA+TGG 0.366166 8.2:+26699643 MS.gene011887:CDS
TTTGGGCTTGGGCTTGGACA+CGG 0.369333 8.2:+26699629 MS.gene011887:CDS
GGTGATTGTTTCTCTTGGCC+TGG 0.369523 8.2:+26699803 MS.gene011887:CDS
GGCTTTGGGATTGGGAGAAC+AGG 0.373009 8.2:+26699665 MS.gene011887:CDS
TTGCTCCGGTGCCGGTGCAC+CGG 0.375742 8.2:-26699186 None:intergenic
GTTCATTTGAGACCATTTAC+TGG 0.380286 8.2:-26699842 None:intergenic
GAAGAAATGGGCTTTGGGAT+TGG 0.382875 8.2:+26699656 MS.gene011887:CDS
GTGGTGGTGATTGTTTCTCT+TGG 0.384765 8.2:+26699798 MS.gene011887:CDS
TGTTGATCGGCGGCTTTCAC+CGG 0.408674 8.2:-26699147 None:intergenic
GGTGCACCGGGGCGGATTTG+AGG 0.417132 8.2:-26699173 None:intergenic
AACTCTGGGTTTCTGGCATT+AGG 0.420912 8.2:+26699602 MS.gene011887:CDS
CCGCCCCGGTGCACCGGCAC+CGG 0.422541 8.2:+26699181 MS.gene011887:CDS
TGCCGTGACTTCAGCGGCGC+CGG 0.425658 8.2:+26699427 MS.gene011887:CDS
AACAACAACAATCAAAACTC+TGG 0.431082 8.2:+26699587 MS.gene011887:CDS
CCTCCTTGGACGGCGGCGAT+GGG 0.436349 8.2:-26699476 None:intergenic
AGATTCTCTTGCTCCGGTGC+CGG 0.436640 8.2:-26699194 None:intergenic
ACCATTTACTGGTGTTGAAA+TGG 0.438626 8.2:-26699831 None:intergenic
TTGGGATTGGGAGAACAGGT+TGG 0.446014 8.2:+26699669 MS.gene011887:CDS
ATGCTGAGTACGAGAGCGTT+TGG 0.449036 8.2:-26699375 None:intergenic
GGACACGGGCTTGAAGAAAT+GGG 0.454198 8.2:+26699644 MS.gene011887:CDS
ACAACACCAGAAGACACAAC+AGG 0.458334 8.2:-26699731 None:intergenic
ATCGCCGCCGTCCAAGGAGG+AGG 0.461452 8.2:+26699479 MS.gene011887:CDS
CCGGCGGTATTGACGGTGAT+GGG 0.466545 8.2:+26699516 MS.gene011887:CDS
GGAAACACGTGGCAGTTAGA+AGG 0.471025 8.2:+26699755 MS.gene011887:CDS
ATGGAAAAGACCCTCCTCCT+TGG 0.474800 8.2:-26699490 None:intergenic
CTCCGGCGCCGCTGAAGTCA+CGG 0.478425 8.2:-26699429 None:intergenic
TTTCTGGTACCACCGCCGAC+GGG 0.484650 8.2:-26699347 None:intergenic
CGTGACATCCCCGTCGGCGG+TGG 0.490474 8.2:+26699338 MS.gene011887:CDS
CATGGGAGATTCTCTTGCTC+CGG 0.492080 8.2:-26699200 None:intergenic
CAGTTAGAAGGTGGTGAAGG+TGG 0.495978 8.2:+26699767 MS.gene011887:CDS
TCTCTAAACAATGACATCTT+CGG 0.498140 8.2:+26699121 None:intergenic
TCAAATCCGCCCCGGTGCAC+CGG 0.515212 8.2:+26699175 MS.gene011887:CDS
TCCGGCGGTATTGACGGTGA+TGG 0.517628 8.2:+26699515 MS.gene011887:CDS
CGCCGCTGAAGTCACGGCAG+AGG 0.520050 8.2:-26699423 None:intergenic
AAGCAGAATATGAGTGTTTG+TGG 0.522514 8.2:+26699539 MS.gene011887:CDS
GCTTGATAGTGGTGGTGCTC+CGG 0.532605 8.2:-26699446 None:intergenic
GTTGAATCACAACGTGGACA+TGG 0.538502 8.2:-26699218 None:intergenic
TCTGGGTTTCTGGCATTAGG+TGG 0.547157 8.2:+26699605 MS.gene011887:CDS
ACACCCATCGCCGCCGTCCA+AGG 0.548308 8.2:+26699473 MS.gene011887:CDS
CACCGCCGACGGGGATGTCA+CGG 0.552285 8.2:-26699337 None:intergenic
CACGGCAGAGGAAGAAGATG+AGG 0.555442 8.2:-26699411 None:intergenic
GTAGTAACAAAACTTAGTGT+TGG 0.560310 8.2:-26699240 None:intergenic
GGTGTTGAAATGGCAAGTCC+AGG 0.568708 8.2:-26699821 None:intergenic
TTCTGGTACCACCGCCGACG+GGG 0.573655 8.2:-26699346 None:intergenic
TGGGTGTCATTGCTTGATAG+TGG 0.573994 8.2:-26699457 None:intergenic
ACAACAACAATCAAAACTCT+GGG 0.575835 8.2:+26699588 MS.gene011887:CDS
CCCATCACCGTCAATACCGC+CGG 0.580375 8.2:-26699516 None:intergenic
ACAATGACATCTTCGGACTC+CGG 0.583202 8.2:+26699128 None:intergenic
TCGCCGCCGTCCAAGGAGGA+GGG 0.597058 8.2:+26699480 MS.gene011887:CDS
CCGGTGCCGGTGCACCGGGG+CGG 0.610074 8.2:-26699181 None:intergenic
CTCCGTGACATCCCCGTCGG+CGG 0.612747 8.2:+26699335 MS.gene011887:CDS
TTCCTCTGCCGTGACTTCAG+CGG 0.618657 8.2:+26699421 MS.gene011887:CDS
TGTCGCCGCTACTGGACTCA+CGG 0.619346 8.2:+26699305 MS.gene011887:CDS
ACAAAACCTCAAATCCGCCC+CGG 0.621584 8.2:+26699167 MS.gene011887:CDS
TGGCAGTTAGAAGGTGGTGA+AGG 0.635231 8.2:+26699764 MS.gene011887:CDS
CAAGCTTTGCAGAAATGACG+TGG 0.636873 8.2:-26699284 None:intergenic
ACCCTCCGTGACATCCCCGT+CGG 0.638321 8.2:+26699332 MS.gene011887:CDS
AAAAGACCCTCCTCCTTGGA+CGG 0.641146 8.2:-26699486 None:intergenic
TTGAATCACAACGTGGACAT+GGG 0.644805 8.2:-26699217 None:intergenic
GTGTCATTGCTTGATAGTGG+TGG 0.649877 8.2:-26699454 None:intergenic
TACCACCGTGAGTCCAGTAG+CGG 0.656577 8.2:-26699310 None:intergenic
GCTCCGGTGCCGGTGCACCG+GGG 0.657998 8.2:-26699184 None:intergenic
AGACCCTCCTCCTTGGACGG+CGG 0.662999 8.2:-26699483 None:intergenic
GCCGACGGGGATGTCACGGA+GGG 0.667751 8.2:-26699333 None:intergenic
AACACGTGGCAGTTAGAAGG+TGG 0.673819 8.2:+26699758 MS.gene011887:CDS
CCCATCGCCGCCGTCCAAGG+AGG 0.674014 8.2:+26699476 MS.gene011887:CDS
CGCCGACGGGGATGTCACGG+AGG 0.674019 8.2:-26699334 None:intergenic
ATGGTGGATGGATCAAACAT+TGG 0.699118 8.2:+26699704 MS.gene011887:CDS
CTGGTGTTGTTGGAAACACG+TGG 0.703407 8.2:+26699744 MS.gene011887:CDS
CGCCGCTACTGGACTCACGG+TGG 0.745530 8.2:+26699308 MS.gene011887:CDS
GTGTTGGTTGAATCACAACG+TGG 0.795975 8.2:-26699224 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AACAACAACAATCAAAACTC+TGG + chr8.2:26699587-26699606 MS.gene011887:CDS 30.0%
ACAACAACAATCAAAACTCT+GGG + chr8.2:26699588-26699607 MS.gene011887:CDS 30.0%
GTAGTAACAAAACTTAGTGT+TGG - chr8.2:26699243-26699262 None:intergenic 30.0%
AAGCAGAATATGAGTGTTTG+TGG + chr8.2:26699539-26699558 MS.gene011887:CDS 35.0%
! ACCATTTACTGGTGTTGAAA+TGG - chr8.2:26699834-26699853 None:intergenic 35.0%
!!! GGATTTGAGGTTTTGTTGAT+CGG - chr8.2:26699163-26699182 None:intergenic 35.0%
CAATCAAAACTCTGGGTTTC+TGG + chr8.2:26699595-26699614 MS.gene011887:CDS 40.0%
GCCATTTCAACACCAGTAAA+TGG + chr8.2:26699830-26699849 MS.gene011887:CDS 40.0%
TTGAATCACAACGTGGACAT+GGG - chr8.2:26699220-26699239 None:intergenic 40.0%
! TTCTGGCATTAGGTGGATTT+GGG + chr8.2:26699612-26699631 MS.gene011887:CDS 40.0%
! TTTCTGGCATTAGGTGGATT+TGG + chr8.2:26699611-26699630 MS.gene011887:CDS 40.0%
!! AAGAAATGGGCTTTGGGATT+GGG + chr8.2:26699657-26699676 MS.gene011887:CDS 40.0%
!! ATGGTGGATGGATCAAACAT+TGG + chr8.2:26699704-26699723 MS.gene011887:CDS 40.0%
!!! TTTGAGGTTTTGTTGATCGG+CGG - chr8.2:26699160-26699179 None:intergenic 40.0%
ACAACACCAGAAGACACAAC+AGG - chr8.2:26699734-26699753 None:intergenic 45.0%
CAAGCTTTGCAGAAATGACG+TGG - chr8.2:26699287-26699306 None:intergenic 45.0%
GTTGAATCACAACGTGGACA+TGG - chr8.2:26699221-26699240 None:intergenic 45.0%
TTTGATCCATCCACCATTCC+TGG - chr8.2:26699701-26699720 None:intergenic 45.0%
! CATTAGGTGGATTTGGGCTT+GGG + chr8.2:26699618-26699637 MS.gene011887:CDS 45.0%
! GGAGGGTCTTTTCCATTTTC+CGG + chr8.2:26699497-26699516 MS.gene011887:CDS 45.0%
! GGCTTGAAGAAATGGGCTTT+GGG + chr8.2:26699651-26699670 MS.gene011887:CDS 45.0%
! GTGGTGGTGATTGTTTCTCT+TGG + chr8.2:26699798-26699817 MS.gene011887:CDS 45.0%
!! AACTCTGGGTTTCTGGCATT+AGG + chr8.2:26699602-26699621 MS.gene011887:CDS 45.0%
!! GAAGAAATGGGCTTTGGGAT+TGG + chr8.2:26699656-26699675 MS.gene011887:CDS 45.0%
!! GTGTCATTGCTTGATAGTGG+TGG - chr8.2:26699457-26699476 None:intergenic 45.0%
!! GTGTTGGTTGAATCACAACG+TGG - chr8.2:26699227-26699246 None:intergenic 45.0%
!! GTTGTGTCTTCTGGTGTTGT+TGG + chr8.2:26699734-26699753 MS.gene011887:CDS 45.0%
!! TGGGTGTCATTGCTTGATAG+TGG - chr8.2:26699460-26699479 None:intergenic 45.0%
!!! AGAGCGTTTGGCGTTTTTTC+TGG - chr8.2:26699366-26699385 None:intergenic 45.0%
AAAAGACCCTCCTCCTTGGA+CGG - chr8.2:26699489-26699508 None:intergenic 50.0%
AACACGTGGCAGTTAGAAGG+TGG + chr8.2:26699758-26699777 MS.gene011887:CDS 50.0%
ACAAAACCTCAAATCCGCCC+CGG + chr8.2:26699167-26699186 MS.gene011887:CDS 50.0%
ATGGAAAAGACCCTCCTCCT+TGG - chr8.2:26699493-26699512 None:intergenic 50.0%
CAGTTAGAAGGTGGTGAAGG+TGG + chr8.2:26699767-26699786 MS.gene011887:CDS 50.0%
CATGGGAGATTCTCTTGCTC+CGG - chr8.2:26699203-26699222 None:intergenic 50.0%
GGAAACACGTGGCAGTTAGA+AGG + chr8.2:26699755-26699774 MS.gene011887:CDS 50.0%
GGACACGGGCTTGAAGAAAT+GGG + chr8.2:26699644-26699663 MS.gene011887:CDS 50.0%
GGTGTTCCTGTTGTGTCTTC+TGG + chr8.2:26699725-26699744 MS.gene011887:CDS 50.0%
TGGACACGGGCTTGAAGAAA+TGG + chr8.2:26699643-26699662 MS.gene011887:CDS 50.0%
TGGCAGTTAGAAGGTGGTGA+AGG + chr8.2:26699764-26699783 MS.gene011887:CDS 50.0%
TGGGATTGGGAGAACAGGTT+GGG + chr8.2:26699670-26699689 MS.gene011887:CDS 50.0%
TTGGGATTGGGAGAACAGGT+TGG + chr8.2:26699669-26699688 MS.gene011887:CDS 50.0%
! AGGTTGGGCTTTTCCAGGAA+TGG + chr8.2:26699685-26699704 MS.gene011887:CDS 50.0%
! GCATTAGGTGGATTTGGGCT+TGG + chr8.2:26699617-26699636 MS.gene011887:CDS 50.0%
! GGGCTTGAAGAAATGGGCTT+TGG + chr8.2:26699650-26699669 MS.gene011887:CDS 50.0%
! GGGTCTTTTCCATTTTCCGG+CGG + chr8.2:26699500-26699519 MS.gene011887:CDS 50.0%
! GGTGATTGTTTCTCTTGGCC+TGG + chr8.2:26699803-26699822 MS.gene011887:CDS 50.0%
! GGTGTTGAAATGGCAAGTCC+AGG - chr8.2:26699824-26699843 None:intergenic 50.0%
! TTGGGCTTTTCCAGGAATGG+TGG + chr8.2:26699688-26699707 MS.gene011887:CDS 50.0%
!! AGAACAGGTTGGGCTTTTCC+AGG + chr8.2:26699680-26699699 MS.gene011887:CDS 50.0%
!! ATGCTGAGTACGAGAGCGTT+TGG - chr8.2:26699378-26699397 None:intergenic 50.0%
!! CCATTTTCCGGCGGTATTGA+CGG + chr8.2:26699509-26699528 MS.gene011887:CDS 50.0%
!! CTGGTGTTGTTGGAAACACG+TGG + chr8.2:26699744-26699763 MS.gene011887:CDS 50.0%
!! GCTTTTCCAGGAATGGTGGA+TGG + chr8.2:26699692-26699711 MS.gene011887:CDS 50.0%
!! TCTGGGTTTCTGGCATTAGG+TGG + chr8.2:26699605-26699624 MS.gene011887:CDS 50.0%
!!! GAAGGTGGTTTTGTTGGTGG+TGG + chr8.2:26699782-26699801 MS.gene011887:CDS 50.0%
!!! GGTGAAGGTGGTTTTGTTGG+TGG + chr8.2:26699779-26699798 MS.gene011887:CDS 50.0%
!!! GGTGGTGAAGGTGGTTTTGT+TGG + chr8.2:26699776-26699795 MS.gene011887:CDS 50.0%
AGATTCTCTTGCTCCGGTGC+CGG - chr8.2:26699197-26699216 None:intergenic 55.0%
CACGGCAGAGGAAGAAGATG+AGG - chr8.2:26699414-26699433 None:intergenic 55.0%
CCGTCAATACCGCCGGAAAA+TGG - chr8.2:26699512-26699531 None:intergenic 55.0%
TACCACCGTGAGTCCAGTAG+CGG - chr8.2:26699313-26699332 None:intergenic 55.0%
TGTTGATCGGCGGCTTTCAC+CGG - chr8.2:26699150-26699169 None:intergenic 55.0%
TTCCTCTGCCGTGACTTCAG+CGG + chr8.2:26699421-26699440 MS.gene011887:CDS 55.0%
TTTGGGCTTGGGCTTGGACA+CGG + chr8.2:26699629-26699648 MS.gene011887:CDS 55.0%
!! GCTTGATAGTGGTGGTGCTC+CGG - chr8.2:26699449-26699468 None:intergenic 55.0%
!! GGCTTTGGGATTGGGAGAAC+AGG + chr8.2:26699665-26699684 MS.gene011887:CDS 55.0%
!! TTTTCTGGTACCACCGCCGA+CGG - chr8.2:26699351-26699370 None:intergenic 55.0%
CCCATCACCGTCAATACCGC+CGG - chr8.2:26699519-26699538 None:intergenic 60.0%
GCAAAGCTTGTCGCCGCTAC+TGG + chr8.2:26699297-26699316 MS.gene011887:CDS 60.0%
TGTCGCCGCTACTGGACTCA+CGG + chr8.2:26699305-26699324 MS.gene011887:CDS 60.0%
TTGGGCTTGGGCTTGGACAC+GGG + chr8.2:26699630-26699649 MS.gene011887:CDS 60.0%
! GGTGGATTTGGGCTTGGGCT+TGG + chr8.2:26699623-26699642 MS.gene011887:CDS 60.0%
! TTTCTGGTACCACCGCCGAC+GGG - chr8.2:26699350-26699369 None:intergenic 60.0%
!! CCGGCGGTATTGACGGTGAT+GGG + chr8.2:26699516-26699535 MS.gene011887:CDS 60.0%
!! TCCGGCGGTATTGACGGTGA+TGG + chr8.2:26699515-26699534 MS.gene011887:CDS 60.0%
ACCCTCCGTGACATCCCCGT+CGG + chr8.2:26699332-26699351 MS.gene011887:CDS 65.0%
AGACCCTCCTCCTTGGACGG+CGG - chr8.2:26699486-26699505 None:intergenic 65.0%
TCAAATCCGCCCCGGTGCAC+CGG + chr8.2:26699175-26699194 MS.gene011887:CDS 65.0%
TTCTGGTACCACCGCCGACG+GGG - chr8.2:26699349-26699368 None:intergenic 65.0%
ACACCCATCGCCGCCGTCCA+AGG + chr8.2:26699473-26699492 MS.gene011887:CDS 70.0%
ATCGCCGCCGTCCAAGGAGG+AGG + chr8.2:26699479-26699498 MS.gene011887:CDS 70.0%
CACCGCCGACGGGGATGTCA+CGG - chr8.2:26699340-26699359 None:intergenic 70.0%
CCTCCTTGGACGGCGGCGAT+GGG - chr8.2:26699479-26699498 None:intergenic 70.0%
CGCCGCTACTGGACTCACGG+TGG + chr8.2:26699308-26699327 MS.gene011887:CDS 70.0%
CGCCGCTGAAGTCACGGCAG+AGG - chr8.2:26699426-26699445 None:intergenic 70.0%
CTCCGGCGCCGCTGAAGTCA+CGG - chr8.2:26699432-26699451 None:intergenic 70.0%
CTCCGTGACATCCCCGTCGG+CGG + chr8.2:26699335-26699354 MS.gene011887:CDS 70.0%
GCCGACGGGGATGTCACGGA+GGG - chr8.2:26699336-26699355 None:intergenic 70.0%
TCCTCCTTGGACGGCGGCGA+TGG - chr8.2:26699480-26699499 None:intergenic 70.0%
TCGCCGCCGTCCAAGGAGGA+GGG + chr8.2:26699480-26699499 MS.gene011887:CDS 70.0%
TGCCGTGACTTCAGCGGCGC+CGG + chr8.2:26699427-26699446 MS.gene011887:CDS 70.0%
! GGTGCACCGGGGCGGATTTG+AGG - chr8.2:26699176-26699195 None:intergenic 70.0%
!! TTGCTCCGGTGCCGGTGCAC+CGG - chr8.2:26699189-26699208 None:intergenic 70.0%
CCCATCGCCGCCGTCCAAGG+AGG + chr8.2:26699476-26699495 MS.gene011887:CDS 75.0%
CGCCGACGGGGATGTCACGG+AGG - chr8.2:26699337-26699356 None:intergenic 75.0%
CGTGACATCCCCGTCGGCGG+TGG + chr8.2:26699338-26699357 MS.gene011887:CDS 75.0%
!! TGCTCCGGTGCCGGTGCACC+GGG - chr8.2:26699188-26699207 None:intergenic 75.0%
!!! GCTCCGGTGCCGGTGCACCG+GGG - chr8.2:26699187-26699206 None:intergenic 80.0%
!! CCGCCCCGGTGCACCGGCAC+CGG + chr8.2:26699181-26699200 MS.gene011887:CDS 85.0%
!!! CCGGTGCCGGTGCACCGGGG+CGG - chr8.2:26699184-26699203 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 26699131 26699862 26699131 ID=MS.gene011887
chr8.2 mRNA 26699131 26699862 26699131 ID=MS.gene011887.t1;Parent=MS.gene011887
chr8.2 exon 26699131 26699862 26699131 ID=MS.gene011887.t1.exon1;Parent=MS.gene011887.t1
chr8.2 CDS 26699131 26699862 26699131 ID=cds.MS.gene011887.t1;Parent=MS.gene011887.t1
Gene Sequence

>MS.gene011887

ATGACATCTTCGGACTCCGGTGAAAGCCGCCGATCAACAAAACCTCAAATCCGCCCCGGTGCACCGGCACCGGAGCAAGAGAATCTCCCATGTCCACGTTGTGATTCAACCAACACTAAGTTTTGTTACTACAACAACTACAACTACTCTCAGCCACGTCATTTCTGCAAAGCTTGTCGCCGCTACTGGACTCACGGTGGTACCCTCCGTGACATCCCCGTCGGCGGTGGTACCAGAAAAAACGCCAAACGCTCTCGTACTCAGCATGTTGCTGTCACTTCCTCATCTTCTTCCTCTGCCGTGACTTCAGCGGCGCCGGAGCACCACCACTATCAAGCAATGACACCCATCGCCGCCGTCCAAGGAGGAGGGTCTTTTCCATTTTCCGGCGGTATTGACGGTGATGGGAAGCAGAATATGAGTGTTTGTGGAAGCTTCACTTCATTGCTGAACAACAACAACAACAATCAAAACTCTGGGTTTCTGGCATTAGGTGGATTTGGGCTTGGGCTTGGACACGGGCTTGAAGAAATGGGCTTTGGGATTGGGAGAACAGGTTGGGCTTTTCCAGGAATGGTGGATGGATCAAACATTGGTGTTCCTGTTGTGTCTTCTGGTGTTGTTGGAAACACGTGGCAGTTAGAAGGTGGTGAAGGTGGTTTTGTTGGTGGTGGTGATTGTTTCTCTTGGCCTGGACTTGCCATTTCAACACCAGTAAATGGTCTCAAATGA
Protein sequence

>MS.gene011887.t1

MTSSDSGESRRSTKPQIRPGAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKNAKRSRTQHVAVTSSSSSSAVTSAAPEHHHYQAMTPIAAVQGGGSFPFSGGIDGDGKQNMSVCGSFTSLLNNNNNNQNSGFLALGGFGLGLGHGLEEMGFGIGRTGWAFPGMVDGSNIGVPVVSSGVVGNTWQLEGGEGGFVGGGDCFSWPGLAISTPVNGLK