AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011906

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011906.t1 MTR_8g078700 87.347 490 52 4 1 480 1 490 0.0 871
MS.gene011906.t1 MTR_8g078490 62.039 461 148 7 33 475 387 838 0.0 547
MS.gene011906.t1 MTR_4g132610 59.236 314 103 3 39 345 367 662 3.26e-114 361
MS.gene011906.t1 MTR_5g018850 58.271 266 100 5 218 475 817 1079 5.20e-91 303
MS.gene011906.t1 MTR_5g018850 41.096 146 79 1 56 194 507 652 3.65e-26 113
MS.gene011906.t1 MTR_8g078505 59.756 246 51 2 20 228 6 240 2.81e-87 278
MS.gene011906.t1 MTR_4g132670 42.276 246 74 4 78 322 210 388 3.28e-50 176
MS.gene011906.t1 MTR_4g132670 56.897 58 25 0 58 115 55 112 6.34e-14 73.9
MS.gene011906.t1 MTR_8g442480 51.685 89 40 2 63 148 2 90 4.38e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011906.t1 AT2G23740 50.254 197 96 2 252 448 722 916 4.04e-55 199
MS.gene011906.t1 AT2G23740 41.353 133 70 2 45 169 404 536 5.61e-21 97.4
MS.gene011906.t1 AT2G23740 50.254 197 96 2 252 448 729 923 4.29e-55 199
MS.gene011906.t1 AT2G23740 41.353 133 70 2 45 169 411 543 6.25e-21 97.4
MS.gene011906.t1 AT2G23740 50.254 197 96 2 252 448 729 923 4.29e-55 199
MS.gene011906.t1 AT2G23740 41.353 133 70 2 45 169 411 543 6.25e-21 97.4
MS.gene011906.t1 AT2G23740 50.254 197 96 2 252 448 729 923 4.29e-55 199
MS.gene011906.t1 AT2G23740 41.353 133 70 2 45 169 411 543 6.25e-21 97.4
MS.gene011906.t1 AT2G23740 50.254 197 96 2 252 448 729 923 4.74e-55 199
MS.gene011906.t1 AT2G23740 41.353 133 70 2 45 169 411 543 5.58e-21 97.4
MS.gene011906.t1 AT2G23740 50.254 197 96 2 252 448 729 923 4.74e-55 199
MS.gene011906.t1 AT2G23740 41.353 133 70 2 45 169 411 543 5.58e-21 97.4

Find 93 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTCAGATAGAGCCTTTC+TGG 0.146763 8.2:-26959798 None:intergenic
TCCAAACCTCTTTCAAATTT+AGG 0.154205 8.2:-26959611 None:intergenic
GGCGAAACGCTCAAGCTTTC+CGG 0.154625 8.2:+26958933 MS.gene011906:CDS
ATTCCTTGTGGTTGTCATTT+TGG 0.199979 8.2:+26959245 MS.gene011906:CDS
TTGATCTCCAATGGACTTTC+CGG 0.248032 8.2:-26958858 None:intergenic
CCAGCCTCATGCAGATAAAT+TGG 0.273277 8.2:+26959727 MS.gene011906:CDS
TTGGAAATATAGAGGAATTA+TGG 0.274132 8.2:+26959264 MS.gene011906:CDS
GGCAAATAAGTTGCTTGAAA+TGG 0.279485 8.2:+26959691 MS.gene011906:CDS
CCTCTTTCAAATTTAGGATT+AGG 0.281407 8.2:-26959605 None:intergenic
TTCTTCGCAAAGAACATCTT+TGG 0.285228 8.2:+26958912 MS.gene011906:CDS
ACGCAAATATGTTCTTCATT+AGG 0.299340 8.2:-26958417 None:intergenic
CTTGACATTGTCGACCCTTT+TGG 0.303194 8.2:-26958524 None:intergenic
TCCTAAATTTGAAAGAGGTT+TGG 0.365758 8.2:+26959610 MS.gene011906:CDS
TGTACGAGATATTGAATTTG+AGG 0.372830 8.2:-26958763 None:intergenic
CCATCATCAAGCTGCTCATA+TGG 0.373746 8.2:+26959499 MS.gene011906:CDS
GCCTGTCCACTGATCATTAC+CGG 0.388651 8.2:-26958952 None:intergenic
GCAGTTGTACCTCCACAAAA+TGG 0.390067 8.2:-26958657 None:intergenic
TCCAATGGTTGCCAAGTGTT+TGG 0.392168 8.2:-26959070 None:intergenic
GCAAATAAGTTGCTTGAAAT+GGG 0.399729 8.2:+26959692 MS.gene011906:CDS
AAGAGACACTATGGGCAGTT+TGG 0.400556 8.2:+26959197 MS.gene011906:CDS
AGTCTTTGCAAATCAGGCTC+TGG 0.401375 8.2:-26958821 None:intergenic
CGATCTAGCCAGCAGGCGCT+TGG 0.413605 8.2:+26959526 MS.gene011906:CDS
ACACCAAGTCTTTGCAAATC+AGG 0.417723 8.2:-26958827 None:intergenic
GGAAGAATCTCAATGCTTAG+AGG 0.420258 8.2:+26959748 MS.gene011906:CDS
AGTTATCGAAAGCTTAAATT+CGG 0.424504 8.2:-26959312 None:intergenic
CCTAATCCTAAATTTGAAAG+AGG 0.427935 8.2:+26959605 MS.gene011906:CDS
GTTTGGAAGAAGCATCAAAT+AGG 0.428853 8.2:+26959627 MS.gene011906:CDS
AGACTTGGTGTTTGTACATC+CGG 0.429428 8.2:+26958839 MS.gene011906:CDS
ATCGAAAGCTTAAATTCGGC+AGG 0.430592 8.2:-26959308 None:intergenic
TTTCATGACTTTCCATCCAA+TGG 0.430775 8.2:-26959085 None:intergenic
CCAATTTATCTGCATGAGGC+TGG 0.431124 8.2:-26959727 None:intergenic
ACTCTTTGCCAAGCGCCTGC+TGG 0.443750 8.2:-26959534 None:intergenic
CAGTGACAGTTCATCTGTAA+TGG 0.451819 8.2:+26958482 MS.gene011906:CDS
GTTCGCGGAAGTTTAGTTGC+AGG 0.454226 8.2:+26959435 MS.gene011906:CDS
TAATTTCAAGAATAGAAATC+AGG 0.462085 8.2:+26959670 MS.gene011906:CDS
TTCTCCTAAAATGATTGAGC+AGG 0.465200 8.2:+26959367 MS.gene011906:CDS
TGATGATGGCGACCGAGATC+AGG 0.469915 8.2:-26959485 None:intergenic
GTCTTTGCAAATCAGGCTCT+GGG 0.470035 8.2:-26958820 None:intergenic
ACCAAACACTTGGCAACCAT+TGG 0.477256 8.2:+26959069 MS.gene011906:CDS
GACTCTTATAGAAAACCAAA+AGG 0.481717 8.2:+26958509 MS.gene011906:CDS
CCATATGAGCAGCTTGATGA+TGG 0.488631 8.2:-26959499 None:intergenic
TGAGAGTGCTGTTAAGTGTA+AGG 0.490329 8.2:+26959022 MS.gene011906:CDS
TTGGATGGAAAGTCATGAAA+AGG 0.491304 8.2:+26959088 MS.gene011906:CDS
TCATCATTGACGATTGACTC+TGG 0.492547 8.2:-26958882 None:intergenic
AGTGAAGGAATCAAAACAAA+AGG 0.493161 8.2:-26959144 None:intergenic
CATGTTCAGAAGAGACACTA+TGG 0.495523 8.2:+26959188 MS.gene011906:CDS
ACATCTGCACAAAGCTGAGA+TGG 0.500567 8.2:+26958734 MS.gene011906:CDS
GAGATATTGAATTTGAGGTC+TGG 0.501478 8.2:-26958758 None:intergenic
CAGTGCGTGAGAACCGCAAT+TGG 0.508352 8.2:+26958570 MS.gene011906:CDS
GTTTCGTTTATCTACCAGAA+AGG 0.508712 8.2:+26959784 MS.gene011906:CDS
TATGCTCAGAGACTAAAATC+TGG 0.515386 8.2:+26959569 MS.gene011906:CDS
GAGCCTGATTTGCAAAGACT+TGG 0.521361 8.2:+26958824 MS.gene011906:CDS
TTCAAATTTAGGATTAGGAC+GGG 0.522702 8.2:-26959600 None:intergenic
ATTAGCTTTAGCCCTTCTCC+TGG 0.523241 8.2:-26959651 None:intergenic
TCCGGTAATGATCAGTGGAC+AGG 0.523358 8.2:+26958951 MS.gene011906:CDS
TGGAGCGCGATCTAGCCAGC+AGG 0.523628 8.2:+26959519 MS.gene011906:CDS
AGCAGGCGCTTGGCAAAGAG+TGG 0.523735 8.2:+26959536 MS.gene011906:CDS
ACAAATCAAGGAGCAGCTTA+CGG 0.524363 8.2:+26958393 MS.gene011906:CDS
CAATATCTCGTACATTAAAG+AGG 0.524991 8.2:+26958772 MS.gene011906:CDS
GACTCTGGATTGATCTCCAA+TGG 0.529884 8.2:-26958867 None:intergenic
CTGAGAATCGAAGTGGTTCG+CGG 0.530378 8.2:+26959420 MS.gene011906:CDS
GTGTATATTGTTACCAATTG+CGG 0.530995 8.2:-26958583 None:intergenic
TGTACATCCGGAAAGTCCAT+TGG 0.533385 8.2:+26958851 MS.gene011906:CDS
CATCAAATAGGACCAGGAGA+AGG 0.534319 8.2:+26959639 MS.gene011906:CDS
TTTGATTTACTACCTGATCT+CGG 0.536142 8.2:+26959473 MS.gene011906:CDS
AACACTTGGCAACCATTGGA+TGG 0.536290 8.2:+26959073 MS.gene011906:CDS
TTTCAAATTTAGGATTAGGA+CGG 0.543514 8.2:-26959601 None:intergenic
ATCAAATAGGACCAGGAGAA+GGG 0.546017 8.2:+26959640 MS.gene011906:CDS
TTTATCTGCATGAGGCTGGA+TGG 0.546716 8.2:-26959723 None:intergenic
TCTTCCAATTTATCTGCATG+AGG 0.563398 8.2:-26959731 None:intergenic
GATTGCTCTGAGACAAATCA+AGG 0.567116 8.2:+26958381 MS.gene011906:CDS
GACAGTTCATCTGTAATGGA+AGG 0.570153 8.2:+26958486 MS.gene011906:CDS
ACCAGAAAGGCTCTATCTGA+AGG 0.579442 8.2:+26959797 MS.gene011906:CDS
CATCTGCACAAAGCTGAGAT+GGG 0.579947 8.2:+26958735 MS.gene011906:CDS
ACTCTTATAGAAAACCAAAA+GGG 0.580021 8.2:+26958510 MS.gene011906:CDS
TGGACAGGCTCTCCTAGCTA+TGG 0.583120 8.2:+26958966 MS.gene011906:CDS
TTATGATCATTACCATAGCT+AGG 0.583706 8.2:-26958978 None:intergenic
TGTGGAGGTACAACTGCTGC+TGG 0.586893 8.2:+26958663 MS.gene011906:CDS
TCTCCTAAAATGATTGAGCA+GGG 0.608885 8.2:+26959368 MS.gene011906:CDS
GAAGCACAGTGGTTGTTCAG+AGG 0.608970 8.2:+26959110 MS.gene011906:CDS
GATAATTCTGAGAATCGAAG+TGG 0.614192 8.2:+26959413 MS.gene011906:CDS
AGCTTTCCGGTAATGATCAG+TGG 0.616263 8.2:+26958946 MS.gene011906:CDS
CATATATCGAAGACAAGGGA+AGG 0.617551 8.2:+26958547 MS.gene011906:CDS
GAGCAACTAACATTGTCTAC+CGG 0.626990 8.2:+26959338 MS.gene011906:CDS
TCAAGCATATATCGAAGACA+AGG 0.630094 8.2:+26958542 MS.gene011906:CDS
ACAGTTCATCTGTAATGGAA+GGG 0.632090 8.2:+26958487 MS.gene011906:CDS
AAGAAGCATCAAATAGGACC+AGG 0.634670 8.2:+26959633 MS.gene011906:CDS
ATGTTCAGAAGAGACACTAT+GGG 0.654163 8.2:+26959189 MS.gene011906:CDS
TCGAAAGCTTAAATTCGGCA+GGG 0.657128 8.2:-26959307 None:intergenic
AAAGCTGAACAAAATTGCAG+TGG 0.668916 8.2:+26958795 MS.gene011906:CDS
CAAGCATATATCGAAGACAA+GGG 0.692685 8.2:+26958543 MS.gene011906:CDS
TTTCCAAAATGACAACCACA+AGG 0.715599 8.2:-26959248 None:intergenic
GTCATGAAAAGGAAGCACAG+TGG 0.767507 8.2:+26959099 MS.gene011906:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTTAAGTAAAAAAGAA+AGG + chr8.2:26958616-26958635 MS.gene011906:CDS 15.0%
!! TAATTTCAAGAATAGAAATC+AGG + chr8.2:26959670-26959689 MS.gene011906:CDS 20.0%
!! TTCTTACAAAAAGATAATCT+GGG - chr8.2:26958714-26958733 None:intergenic 20.0%
!! TTTCTTACAAAAAGATAATC+TGG - chr8.2:26958715-26958734 None:intergenic 20.0%
! ACTCTTATAGAAAACCAAAA+GGG + chr8.2:26958510-26958529 MS.gene011906:CDS 25.0%
! AGTTATCGAAAGCTTAAATT+CGG - chr8.2:26959315-26959334 None:intergenic 25.0%
! CTTCACTAACAAAAAACTAT+TGG + chr8.2:26959160-26959179 MS.gene011906:CDS 25.0%
! TTGGAAATATAGAGGAATTA+TGG + chr8.2:26959264-26959283 MS.gene011906:CDS 25.0%
!! TTTCAAATTTAGGATTAGGA+CGG - chr8.2:26959604-26959623 None:intergenic 25.0%
!!! CAATAGTTTTTTGTTAGTGA+AGG - chr8.2:26959162-26959181 None:intergenic 25.0%
!!! TTGTCATTTTGGAAATATAG+AGG + chr8.2:26959256-26959275 MS.gene011906:CDS 25.0%
ACAAAAAGATAATCTGGGAA+GGG - chr8.2:26958709-26958728 None:intergenic 30.0%
ACGCAAATATGTTCTTCATT+AGG - chr8.2:26958420-26958439 None:intergenic 30.0%
AGTGAAGGAATCAAAACAAA+AGG - chr8.2:26959147-26959166 None:intergenic 30.0%
CAATATCTCGTACATTAAAG+AGG + chr8.2:26958772-26958791 MS.gene011906:CDS 30.0%
CCTAATCCTAAATTTGAAAG+AGG + chr8.2:26959605-26959624 MS.gene011906:CDS 30.0%
GACTCTTATAGAAAACCAAA+AGG + chr8.2:26958509-26958528 MS.gene011906:CDS 30.0%
GCAAATAAGTTGCTTGAAAT+GGG + chr8.2:26959692-26959711 MS.gene011906:CDS 30.0%
GTGTATATTGTTACCAATTG+CGG - chr8.2:26958586-26958605 None:intergenic 30.0%
TACAAAAAGATAATCTGGGA+AGG - chr8.2:26958710-26958729 None:intergenic 30.0%
TCCAAACCTCTTTCAAATTT+AGG - chr8.2:26959614-26959633 None:intergenic 30.0%
TCCTAAATTTGAAAGAGGTT+TGG + chr8.2:26959610-26959629 MS.gene011906:CDS 30.0%
TGTACGAGATATTGAATTTG+AGG - chr8.2:26958766-26958785 None:intergenic 30.0%
TTATGATCATTACCATAGCT+AGG - chr8.2:26958981-26959000 None:intergenic 30.0%
! CCTCTTTCAAATTTAGGATT+AGG - chr8.2:26959608-26959627 None:intergenic 30.0%
! CTTTTTCTATGTATTCCTTG+TGG + chr8.2:26959233-26959252 MS.gene011906:CDS 30.0%
! TTCAAATTTAGGATTAGGAC+GGG - chr8.2:26959603-26959622 None:intergenic 30.0%
! TTTGATTTACTACCTGATCT+CGG + chr8.2:26959473-26959492 MS.gene011906:CDS 30.0%
! TTTTCTGATAACCAAACACT+TGG + chr8.2:26959059-26959078 MS.gene011906:CDS 30.0%
AAAGCTGAACAAAATTGCAG+TGG + chr8.2:26958795-26958814 MS.gene011906:CDS 35.0%
ATGTTCAGAAGAGACACTAT+GGG + chr8.2:26959189-26959208 MS.gene011906:CDS 35.0%
CAAGCATATATCGAAGACAA+GGG + chr8.2:26958543-26958562 MS.gene011906:CDS 35.0%
GGCAAATAAGTTGCTTGAAA+TGG + chr8.2:26959691-26959710 MS.gene011906:CDS 35.0%
GTTTCGTTTATCTACCAGAA+AGG + chr8.2:26959784-26959803 MS.gene011906:CDS 35.0%
TATGCTCAGAGACTAAAATC+TGG + chr8.2:26959569-26959588 MS.gene011906:CDS 35.0%
TCAAGCATATATCGAAGACA+AGG + chr8.2:26958542-26958561 MS.gene011906:CDS 35.0%
TCTCCTAAAATGATTGAGCA+GGG + chr8.2:26959368-26959387 MS.gene011906:CDS 35.0%
TCTTCCAATTTATCTGCATG+AGG - chr8.2:26959734-26959753 None:intergenic 35.0%
TTCTCCTAAAATGATTGAGC+AGG + chr8.2:26959367-26959386 MS.gene011906:CDS 35.0%
TTCTTCGCAAAGAACATCTT+TGG + chr8.2:26958912-26958931 MS.gene011906:CDS 35.0%
TTGGATGGAAAGTCATGAAA+AGG + chr8.2:26959088-26959107 MS.gene011906:CDS 35.0%
TTTCATGACTTTCCATCCAA+TGG - chr8.2:26959088-26959107 None:intergenic 35.0%
TTTCCAAAATGACAACCACA+AGG - chr8.2:26959251-26959270 None:intergenic 35.0%
! AAAGCAATCACTCCATTTTG+TGG + chr8.2:26958645-26958664 MS.gene011906:CDS 35.0%
! ACAGTTCATCTGTAATGGAA+GGG + chr8.2:26958487-26958506 MS.gene011906:CDS 35.0%
! GAGATATTGAATTTGAGGTC+TGG - chr8.2:26958761-26958780 None:intergenic 35.0%
! GATAATTCTGAGAATCGAAG+TGG + chr8.2:26959413-26959432 MS.gene011906:CDS 35.0%
! TTTCCCTGCTCAATCATTTT+AGG - chr8.2:26959374-26959393 None:intergenic 35.0%
!! ATTCCTTGTGGTTGTCATTT+TGG + chr8.2:26959245-26959264 MS.gene011906:CDS 35.0%
!! CATTTTAGGAGAATCATCAC+CGG - chr8.2:26959360-26959379 None:intergenic 35.0%
!! GTTTGGAAGAAGCATCAAAT+AGG + chr8.2:26959627-26959646 MS.gene011906:CDS 35.0%
ACAAATCAAGGAGCAGCTTA+CGG + chr8.2:26958393-26958412 MS.gene011906:CDS 40.0%
ACACCAAGTCTTTGCAAATC+AGG - chr8.2:26958830-26958849 None:intergenic 40.0%
ATCAAATAGGACCAGGAGAA+GGG + chr8.2:26959640-26959659 MS.gene011906:CDS 40.0%
ATCGAAAGCTTAAATTCGGC+AGG - chr8.2:26959311-26959330 None:intergenic 40.0%
CAGTGACAGTTCATCTGTAA+TGG + chr8.2:26958482-26958501 MS.gene011906:CDS 40.0%
CATATATCGAAGACAAGGGA+AGG + chr8.2:26958547-26958566 MS.gene011906:CDS 40.0%
CATGTTCAGAAGAGACACTA+TGG + chr8.2:26959188-26959207 MS.gene011906:CDS 40.0%
GAGCAACTAACATTGTCTAC+CGG + chr8.2:26959338-26959357 MS.gene011906:CDS 40.0%
GGAAGAATCTCAATGCTTAG+AGG + chr8.2:26959748-26959767 MS.gene011906:CDS 40.0%
TCGAAAGCTTAAATTCGGCA+GGG - chr8.2:26959310-26959329 None:intergenic 40.0%
! GACAGTTCATCTGTAATGGA+AGG + chr8.2:26958486-26958505 MS.gene011906:CDS 40.0%
! TCATCATTGACGATTGACTC+TGG - chr8.2:26958885-26958904 None:intergenic 40.0%
! TTGATCTCCAATGGACTTTC+CGG - chr8.2:26958861-26958880 None:intergenic 40.0%
!! AAGAAGCATCAAATAGGACC+AGG + chr8.2:26959633-26959652 MS.gene011906:CDS 40.0%
!! AGACTTGGTGTTTGTACATC+CGG + chr8.2:26958839-26958858 MS.gene011906:CDS 40.0%
!! GATTGCTCTGAGACAAATCA+AGG + chr8.2:26958381-26958400 MS.gene011906:CDS 40.0%
!! TGAGAGTGCTGTTAAGTGTA+AGG + chr8.2:26959022-26959041 MS.gene011906:CDS 40.0%
AACACTTGGCAACCATTGGA+TGG + chr8.2:26959073-26959092 MS.gene011906:CDS 45.0%
AAGAGACACTATGGGCAGTT+TGG + chr8.2:26959197-26959216 MS.gene011906:CDS 45.0%
ACATCTGCACAAAGCTGAGA+TGG + chr8.2:26958734-26958753 MS.gene011906:CDS 45.0%
ACCAAACACTTGGCAACCAT+TGG + chr8.2:26959069-26959088 MS.gene011906:CDS 45.0%
ACCAGAAAGGCTCTATCTGA+AGG + chr8.2:26959797-26959816 MS.gene011906:CDS 45.0%
AGCTTTCCGGTAATGATCAG+TGG + chr8.2:26958946-26958965 MS.gene011906:CDS 45.0%
AGTCTTTGCAAATCAGGCTC+TGG - chr8.2:26958824-26958843 None:intergenic 45.0%
CATCAAATAGGACCAGGAGA+AGG + chr8.2:26959639-26959658 MS.gene011906:CDS 45.0%
CATCTGCACAAAGCTGAGAT+GGG + chr8.2:26958735-26958754 MS.gene011906:CDS 45.0%
CCAATTTATCTGCATGAGGC+TGG - chr8.2:26959730-26959749 None:intergenic 45.0%
CCAGCCTCATGCAGATAAAT+TGG + chr8.2:26959727-26959746 MS.gene011906:CDS 45.0%
CCATATGAGCAGCTTGATGA+TGG - chr8.2:26959502-26959521 None:intergenic 45.0%
CCATCATCAAGCTGCTCATA+TGG + chr8.2:26959499-26959518 MS.gene011906:CDS 45.0%
GACTCTGGATTGATCTCCAA+TGG - chr8.2:26958870-26958889 None:intergenic 45.0%
GCAGTTGTACCTCCACAAAA+TGG - chr8.2:26958660-26958679 None:intergenic 45.0%
GTCTTTGCAAATCAGGCTCT+GGG - chr8.2:26958823-26958842 None:intergenic 45.0%
TCCAATGGTTGCCAAGTGTT+TGG - chr8.2:26959073-26959092 None:intergenic 45.0%
TGTACATCCGGAAAGTCCAT+TGG + chr8.2:26958851-26958870 MS.gene011906:CDS 45.0%
TTTATCTGCATGAGGCTGGA+TGG - chr8.2:26959726-26959745 None:intergenic 45.0%
! CTTGACATTGTCGACCCTTT+TGG - chr8.2:26958527-26958546 None:intergenic 45.0%
! GAGCCTGATTTGCAAAGACT+TGG + chr8.2:26958824-26958843 MS.gene011906:CDS 45.0%
! GCAATCACTCCATTTTGTGG+AGG + chr8.2:26958648-26958667 MS.gene011906:CDS 45.0%
! GTCATGAAAAGGAAGCACAG+TGG + chr8.2:26959099-26959118 MS.gene011906:CDS 45.0%
!! ATTAGCTTTAGCCCTTCTCC+TGG - chr8.2:26959654-26959673 None:intergenic 45.0%
CTGAGAATCGAAGTGGTTCG+CGG + chr8.2:26959420-26959439 MS.gene011906:CDS 50.0%
GAAGCACAGTGGTTGTTCAG+AGG + chr8.2:26959110-26959129 MS.gene011906:CDS 50.0%
GCCTGTCCACTGATCATTAC+CGG - chr8.2:26958955-26958974 None:intergenic 50.0%
GCCTTCAGATAGAGCCTTTC+TGG - chr8.2:26959801-26959820 None:intergenic 50.0%
GTTCGCGGAAGTTTAGTTGC+AGG + chr8.2:26959435-26959454 MS.gene011906:CDS 50.0%
TCCGGTAATGATCAGTGGAC+AGG + chr8.2:26958951-26958970 MS.gene011906:CDS 50.0%
CAGTGCGTGAGAACCGCAAT+TGG + chr8.2:26958570-26958589 MS.gene011906:CDS 55.0%
GGCGAAACGCTCAAGCTTTC+CGG + chr8.2:26958933-26958952 MS.gene011906:CDS 55.0%
TGGACAGGCTCTCCTAGCTA+TGG + chr8.2:26958966-26958985 MS.gene011906:CDS 55.0%
! TGTGGAGGTACAACTGCTGC+TGG + chr8.2:26958663-26958682 MS.gene011906:CDS 55.0%
!! TGATGATGGCGACCGAGATC+AGG - chr8.2:26959488-26959507 None:intergenic 55.0%
ACTCTTTGCCAAGCGCCTGC+TGG - chr8.2:26959537-26959556 None:intergenic 60.0%
AGCAGGCGCTTGGCAAAGAG+TGG + chr8.2:26959536-26959555 MS.gene011906:CDS 60.0%
CGATCTAGCCAGCAGGCGCT+TGG + chr8.2:26959526-26959545 MS.gene011906:CDS 65.0%
TGGAGCGCGATCTAGCCAGC+AGG + chr8.2:26959519-26959538 MS.gene011906:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 26958363 26959838 26958363 ID=MS.gene011906
chr8.2 mRNA 26958363 26959838 26958363 ID=MS.gene011906.t1;Parent=MS.gene011906
chr8.2 exon 26958363 26959838 26958363 ID=MS.gene011906.t1.exon1;Parent=MS.gene011906.t1
chr8.2 CDS 26958363 26959838 26958363 ID=cds.MS.gene011906.t1;Parent=MS.gene011906.t1
Gene Sequence

>MS.gene011906

ATGGAAACTCTTTATACTGATTGCTCTGAGACAAATCAAGGAGCAGCTTACGGACCTAATGAAGAACATATTTGCGTTGAAAATCGCGAATATGATATTGCAGAACTTGATGATGAACTCAGTGACAGTTCATCTGTAATGGAAGGGACTCTTATAGAAAACCAAAAGGGTCGACAATGTCAAGCATATATCGAAGACAAGGGAAGGCAGTGCGTGAGAACCGCAATTGGTAACAATATACACTGTTGTGTGCATTTCTTAAGTAAAAAAGAAAGGCGTGTTAAAGCAATCACTCCATTTTGTGGAGGTACAACTGCTGCTGGTACTAGATGTAAGAATCGTTCCCTTCCCAGATTATCTTTTTGTAAGAAACATCTGCACAAAGCTGAGATGGGCCAGACCTCAAATTCAATATCTCGTACATTAAAGAGGAAAGCTGAACAAAATTGCAGTGGTTCCCAGAGCCTGATTTGCAAAGACTTGGTGTTTGTACATCCGGAAAGTCCATTGGAGATCAATCCAGAGTCAATCGTCAATGATGATGATTCTTTCTTCGCAAAGAACATCTTTGGCGAAACGCTCAAGCTTTCCGGTAATGATCAGTGGACAGGCTCTCCTAGCTATGGTAATGATCATAACGAAGACTCTTGTATTGATAATGAGAGTGCTGTTAAGTGTAAGGTCTGCTTTGAAGAATTTTCTGATAACCAAACACTTGGCAACCATTGGATGGAAAGTCATGAAAAGGAAGCACAGTGGTTGTTCAGAGGTTATGCATGTGCCTTTTGTTTTGATTCCTTCACTAACAAAAAACTATTGGAATCACATGTTCAGAAGAGACACTATGGGCAGTTTGGTGAACACTGCTTGCTTTTTCTATGTATTCCTTGTGGTTGTCATTTTGGAAATATAGAGGAATTATGGTTGCATGTTAAGTCAGTTCACCCTGCCGAATTTAAGCTTTCGATAACTCATGAGCAACTAACATTGTCTACCGGTGATGATTCTCCTAAAATGATTGAGCAGGGAAATGAAGCTTCTTTGTACAATGATAATTCTGAGAATCGAAGTGGTTCGCGGAAGTTTAGTTGCAGGTTTTGTGATTTGAAATTTGATTTACTACCTGATCTCGGTCGCCATCATCAAGCTGCTCATATGGAGCGCGATCTAGCCAGCAGGCGCTTGGCAAAGAGTGGAGTTTGTTATTATGCTCAGAGACTAAAATCTGGCAGACTTACCCGTCCTAATCCTAAATTTGAAAGAGGTTTGGAAGAAGCATCAAATAGGACCAGGAGAAGGGCTAAAGCTAATTTCAAGAATAGAAATCAGGCAAATAAGTTGCTTGAAATGGGAGAAATATCCATCCAGCCTCATGCAGATAAATTGGAAGAATCTCAATGCTTAGAGGCTGCAAATGTTTTGTTTCGTTTATCTACCAGAAAGGCTCTATCTGAAGGCAGCAAAATGTTGCAGTGA
Protein sequence

>MS.gene011906.t1

METLYTDCSETNQGAAYGPNEEHICVENREYDIAELDDELSDSSSVMEGTLIENQKGRQCQAYIEDKGRQCVRTAIGNNIHCCVHFLSKKERRVKAITPFCGGTTAAGTRCKNRSLPRLSFCKKHLHKAEMGQTSNSISRTLKRKAEQNCSGSQSLICKDLVFVHPESPLEINPESIVNDDDSFFAKNIFGETLKLSGNDQWTGSPSYGNDHNEDSCIDNESAVKCKVCFEEFSDNQTLGNHWMESHEKEAQWLFRGYACAFCFDSFTNKKLLESHVQKRHYGQFGEHCLLFLCIPCGCHFGNIEELWLHVKSVHPAEFKLSITHEQLTLSTGDDSPKMIEQGNEASLYNDNSENRSGSRKFSCRFCDLKFDLLPDLGRHHQAAHMERDLASRRLAKSGVCYYAQRLKSGRLTRPNPKFERGLEEASNRTRRRAKANFKNRNQANKLLEMGEISIQPHADKLEESQCLEAANVLFRLSTRKALSEGSKMLQ