Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011937.t1 | RHN45016.1 | 88 | 734 | 67 | 2 | 1 | 718 | 1 | 729 | 1.00E-180 | 643.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011937.t1 | Q9Y222 | 25.4 | 256 | 174 | 7 | 439 | 689 | 156 | 399 | 1.4e-16 | 89.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011937.t1 | A0A396GV57 | 88.0 | 734 | 67 | 2 | 1 | 718 | 1 | 729 | 7.5e-181 | 643.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011937.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011937.t1 | MTR_8g077990 | 87.755 | 735 | 31 | 5 | 1 | 718 | 1 | 693 | 0.0 | 1114 |
| MS.gene011937.t1 | MTR_1g076600 | 94.059 | 101 | 6 | 0 | 618 | 718 | 55 | 155 | 2.67e-65 | 213 |
| MS.gene011937.t1 | MTR_7g029435 | 92.391 | 92 | 7 | 0 | 627 | 718 | 1 | 92 | 3.65e-56 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011937.t1 | AT5G41020 | 54.770 | 283 | 127 | 1 | 433 | 715 | 302 | 583 | 1.89e-111 | 349 |
Find 124 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAAATTCAAGCTCTTC+AGG | 0.254261 | 8.2:-27375516 | None:intergenic |
| ATCATCATCTTCACATTCAT+TGG | 0.267885 | 8.2:-27374785 | None:intergenic |
| AACAAATGATCCACCATATT+GGG | 0.286872 | 8.2:+27376000 | MS.gene011937:CDS |
| ACATTGCTTTCGGACATATA+TGG | 0.292466 | 8.2:-27374043 | None:intergenic |
| TTGATCTTCTCATCTTCTTC+GGG | 0.322099 | 8.2:-27375297 | None:intergenic |
| TTTGATCTTCTCATCTTCTT+CGG | 0.324153 | 8.2:-27375298 | None:intergenic |
| GAACAAATGATCCACCATAT+TGG | 0.329038 | 8.2:+27375999 | MS.gene011937:CDS |
| CTATATAGATTCTCATGGTT+TGG | 0.339430 | 8.2:+27375335 | MS.gene011937:CDS |
| GTTTCATTATGTGCAGAGTT+AGG | 0.348151 | 8.2:-27375165 | None:intergenic |
| TATATAGATTCTCATGGTTT+GGG | 0.352407 | 8.2:+27375336 | MS.gene011937:CDS |
| TCTCTATCTTTCAACAAGTT+GGG | 0.365789 | 8.2:-27376080 | None:intergenic |
| CTCTCTATCTTTCAACAAGT+TGG | 0.365952 | 8.2:-27376081 | None:intergenic |
| CAGATCAGTTACATTGCTTT+CGG | 0.367004 | 8.2:-27374053 | None:intergenic |
| TTATGTGTGCTTTCTTCACT+TGG | 0.367181 | 8.2:-27374550 | None:intergenic |
| TAGCCCTCTCAAGCAGATCT+AGG | 0.372193 | 8.2:-27375701 | None:intergenic |
| GATAGACGCTTTATATGCTT+TGG | 0.375237 | 8.2:+27375899 | MS.gene011937:CDS |
| ACTCCTAACTCTGCACATAA+TGG | 0.384709 | 8.2:+27375186 | MS.gene011937:CDS |
| GTTCCATTATGTGCAGAGTT+AGG | 0.391649 | 8.2:-27375189 | None:intergenic |
| CTGATCTGCCTTTGATCAAA+AGG | 0.395638 | 8.2:+27374068 | MS.gene011937:CDS |
| TGGCGGCATGCTCCCCAATA+TGG | 0.396320 | 8.2:-27376013 | None:intergenic |
| GGGAGACGAAGGTCTTGATA+TGG | 0.410993 | 8.2:+27375356 | MS.gene011937:CDS |
| TTCCAACAGCCGCTAACCTC+AGG | 0.416232 | 8.2:-27375399 | None:intergenic |
| AGAAGCAATGAAGGTGATAA+TGG | 0.417384 | 8.2:+27374304 | MS.gene011937:CDS |
| GTTTCATTATGTGCACAGTT+AGG | 0.421260 | 8.2:-27375033 | None:intergenic |
| GAGAGCAGTAGCTGACGCTT+TGG | 0.427556 | 8.2:+27375569 | MS.gene011937:CDS |
| TGCTCATACTTTGTTAGAAA+AGG | 0.429545 | 8.2:+27375473 | MS.gene011937:CDS |
| GTTGCGAGATAATATTTGTT+GGG | 0.434220 | 8.2:+27375755 | MS.gene011937:CDS |
| TCATCATCTTCACATTCATT+GGG | 0.442787 | 8.2:-27374784 | None:intergenic |
| AGAGCAGTAGCTGACGCTTT+GGG | 0.446113 | 8.2:+27375570 | MS.gene011937:CDS |
| GCTGCATGGAGGAGGTAGAC+TGG | 0.446516 | 8.2:+27375928 | MS.gene011937:CDS |
| GTCACTGATGTTAATGATCA+AGG | 0.447087 | 8.2:+27375093 | MS.gene011937:CDS |
| CTAAACGCAAACAAGTAACT+TGG | 0.447239 | 8.2:+27375214 | MS.gene011937:CDS |
| TATTCTTCTTCGTCTTGCCT+TGG | 0.449662 | 8.2:-27374861 | None:intergenic |
| CGCCAAGTCATTCATTGAGC+AGG | 0.451714 | 8.2:+27376031 | MS.gene011937:CDS |
| CATTGGTTGCTAGTGGTGAT+TGG | 0.452021 | 8.2:+27375853 | MS.gene011937:CDS |
| AATATTTGTTGGGAGGCAAT+TGG | 0.463198 | 8.2:+27375765 | MS.gene011937:CDS |
| GTCACTGAAGTTAATGATCA+AGG | 0.467385 | 8.2:+27374961 | MS.gene011937:CDS |
| CGTCGATACACACTCTCATA+AGG | 0.471062 | 8.2:-27375450 | None:intergenic |
| ACACTCTCATAAGGCCTCTC+AGG | 0.477449 | 8.2:-27375441 | None:intergenic |
| AAGAAGCACAAACTAATTGA+AGG | 0.478439 | 8.2:+27374631 | MS.gene011937:CDS |
| ACTAGCTCCATGTTGCTCAT+AGG | 0.479373 | 8.2:-27375544 | None:intergenic |
| TGCTTTGGATGCTTGCTGCA+TGG | 0.479442 | 8.2:+27375914 | MS.gene011937:CDS |
| AAAAGGAGGGAAGGTGTAAG+TGG | 0.481580 | 8.2:+27375490 | MS.gene011937:CDS |
| TAGAAGCAATGGAGGTGAAG+AGG | 0.481860 | 8.2:+27374681 | MS.gene011937:CDS |
| ACGGCTTATTGCGTGGGAAA+AGG | 0.484774 | 8.2:+27375268 | MS.gene011937:CDS |
| TGTTGCGAGATAATATTTGT+TGG | 0.489321 | 8.2:+27375754 | MS.gene011937:CDS |
| GGATGCTTGCTGCATGGAGG+AGG | 0.492182 | 8.2:+27375920 | MS.gene011937:CDS |
| ACCCTGAGGTTAGCGGCTGT+TGG | 0.493985 | 8.2:+27375397 | MS.gene011937:CDS |
| AATCTACTTGAGCATATGTC+TGG | 0.495533 | 8.2:+27375954 | MS.gene011937:CDS |
| AAGTGAAGAAAGCACACATA+AGG | 0.495960 | 8.2:+27374552 | MS.gene011937:CDS |
| AAGTGAAGAAAGTAAACATA+AGG | 0.498172 | 8.2:+27374744 | MS.gene011937:CDS |
| TGAAGGTGATAATGGCGAGC+AGG | 0.499793 | 8.2:+27374312 | MS.gene011937:CDS |
| GAGTGACGAAAGCAAACATA+AGG | 0.503590 | 8.2:+27374363 | MS.gene011937:CDS |
| CTCTATCTTTCAACAAGTTG+GGG | 0.504361 | 8.2:-27376079 | None:intergenic |
| AGAAACTAATTGAGGAAGGT+GGG | 0.510841 | 8.2:+27374830 | MS.gene011937:CDS |
| TGTAATGACTTTAGAAGCAA+TGG | 0.511180 | 8.2:+27374670 | MS.gene011937:CDS |
| AAAAGCAATAAAAGTGAAGA+TGG | 0.511576 | 8.2:+27374112 | MS.gene011937:CDS |
| CTGCTCAATGAATGACTTGG+CGG | 0.516982 | 8.2:-27376030 | None:intergenic |
| AAGAAACTAATTGAGGAAGG+TGG | 0.519932 | 8.2:+27374829 | MS.gene011937:CDS |
| CTGCATGGAGGAGGTAGACT+GGG | 0.526890 | 8.2:+27375929 | MS.gene011937:CDS |
| TCAGCATCACCTTCATTGCT+AGG | 0.528214 | 8.2:-27375057 | None:intergenic |
| TCATACTTTGTTAGAAAAGG+AGG | 0.529507 | 8.2:+27375476 | MS.gene011937:CDS |
| AATGAAGAAGAAACTAATTG+AGG | 0.530342 | 8.2:+27374822 | MS.gene011937:CDS |
| TTTGACTATATAGATTCTCA+TGG | 0.532297 | 8.2:+27375330 | MS.gene011937:CDS |
| AAGAAGCGGAAGCTAATTGA+AGG | 0.534553 | 8.2:+27374253 | MS.gene011937:CDS |
| CATATATGGATCGCCTCCAT+TGG | 0.534788 | 8.2:-27374029 | None:intergenic |
| GGAGGCAATTGGTCACAAGT+TGG | 0.536501 | 8.2:+27375776 | MS.gene011937:CDS |
| AAAAGTGAAGATGGCGAGCA+AGG | 0.538269 | 8.2:+27374121 | MS.gene011937:CDS |
| ATATGTCTGGTGATGTGTGC+AGG | 0.541652 | 8.2:+27375967 | MS.gene011937:CDS |
| ATGAGCAACATGGAGCTAGT+TGG | 0.543870 | 8.2:+27375547 | MS.gene011937:CDS |
| AATCACAGGTTTGTTGTCAA+AGG | 0.550299 | 8.2:-27376105 | None:intergenic |
| TTTGGGTAAAAGTCGAGCTC+AGG | 0.550583 | 8.2:+27375587 | MS.gene011937:CDS |
| AGTAACTTGGGCTGATGAAG+TGG | 0.552578 | 8.2:+27375227 | MS.gene011937:CDS |
| AAGAAGAAACTAATTGAGGA+AGG | 0.552685 | 8.2:+27374826 | MS.gene011937:CDS |
| AATGAAACTCCTAGCAATGA+AGG | 0.554019 | 8.2:+27375048 | MS.gene011937:CDS |
| AAGAGAACTGAAGGCGAAGA+GGG | 0.556027 | 8.2:+27374001 | MS.gene011937:CDS |
| GACGGCTTTAGAAGCAATGA+AGG | 0.559488 | 8.2:+27374295 | MS.gene011937:CDS |
| TGTTGTGACGGCTTATTGCG+TGG | 0.561335 | 8.2:+27375261 | MS.gene011937:CDS |
| TGAGCAATTAACATCAACAT+TGG | 0.568371 | 8.2:+27375836 | MS.gene011937:CDS |
| TAAACCTAGATCTGCTTGAG+AGG | 0.570723 | 8.2:+27375697 | MS.gene011937:CDS |
| AGAAGCAATGGAGGTGAAGA+GGG | 0.572295 | 8.2:+27374682 | MS.gene011937:CDS |
| TAGAAACCTCAACAAATCAC+AGG | 0.579568 | 8.2:-27376119 | None:intergenic |
| GAAGGTGATAATGGCGAGCA+GGG | 0.580967 | 8.2:+27374313 | MS.gene011937:CDS |
| CATACTTTGTTAGAAAAGGA+GGG | 0.581182 | 8.2:+27375477 | MS.gene011937:CDS |
| ACATCAACATTGGTTGCTAG+TGG | 0.583463 | 8.2:+27375846 | MS.gene011937:CDS |
| AACAAACCTGTGATTTGTTG+AGG | 0.586181 | 8.2:+27376113 | MS.gene011937:CDS |
| GCGAGATAATATTTGTTGGG+AGG | 0.587211 | 8.2:+27375758 | MS.gene011937:CDS |
| CATATAAAGCGTCTATCAAG+CGG | 0.589919 | 8.2:-27375893 | None:intergenic |
| GGCGAAGAGGGTGAAACCAA+TGG | 0.590103 | 8.2:+27374013 | MS.gene011937:CDS |
| GAGGAGAAGTTATGTTGTGA+CGG | 0.591020 | 8.2:+27375249 | MS.gene011937:CDS |
| AAATTACACCCTGAGGTTAG+CGG | 0.591381 | 8.2:+27375390 | MS.gene011937:CDS |
| CTTTGTTAGAAAAGGAGGGA+AGG | 0.592917 | 8.2:+27375481 | MS.gene011937:CDS |
| CGGCATGCTCCCCAATATGG+TGG | 0.593209 | 8.2:-27376010 | None:intergenic |
| AGAAGCAATGATGATGAAGA+TGG | 0.594055 | 8.2:+27374490 | MS.gene011937:CDS |
| AAACCTAGATCTGCTTGAGA+GGG | 0.602034 | 8.2:+27375698 | MS.gene011937:CDS |
| TCCAACAGCCGCTAACCTCA+GGG | 0.602654 | 8.2:-27375398 | None:intergenic |
| TAAACGCAAACAAGTAACTT+GGG | 0.603412 | 8.2:+27375215 | MS.gene011937:CDS |
| CAACTTGTTGAAAGATAGAG+AGG | 0.613256 | 8.2:+27376082 | MS.gene011937:CDS |
| AACTTGGGCTGATGAAGTGG+AGG | 0.617904 | 8.2:+27375230 | MS.gene011937:CDS |
| CAAGAGAACTGAAGGCGAAG+AGG | 0.619279 | 8.2:+27374000 | MS.gene011937:CDS |
| GAAGGAAACACACTTGAGGA+AGG | 0.622295 | 8.2:+27374271 | MS.gene011937:CDS |
| ACAAATGATCCACCATATTG+GGG | 0.622830 | 8.2:+27376001 | MS.gene011937:CDS |
| TCTCATGGTTTGGGAGACGA+AGG | 0.623440 | 8.2:+27375345 | MS.gene011937:CDS |
| AACCTGCTCAATGAATGACT+TGG | 0.625939 | 8.2:-27376033 | None:intergenic |
| GTGATGTGTGCAGGAAACGA+TGG | 0.634053 | 8.2:+27375976 | MS.gene011937:CDS |
| GAAGGTGGGAATCGTGACCA+AGG | 0.636683 | 8.2:+27374844 | MS.gene011937:CDS |
| CTGCCTTTGATCAAAAGGAA+TGG | 0.637174 | 8.2:+27374073 | MS.gene011937:CDS |
| GAAAAGACCTATGAGCAACA+TGG | 0.638568 | 8.2:+27375537 | MS.gene011937:CDS |
| GTTGTGACGGCTTATTGCGT+GGG | 0.642851 | 8.2:+27375262 | MS.gene011937:CDS |
| TTTGGATGCTTGCTGCATGG+AGG | 0.643384 | 8.2:+27375917 | MS.gene011937:CDS |
| TGATGTGTGCAGGAAACGAT+GGG | 0.644218 | 8.2:+27375977 | MS.gene011937:CDS |
| AATGAATGTGAAGATGATGA+TGG | 0.645642 | 8.2:+27374787 | MS.gene011937:CDS |
| AATTGAAGGAAACACACTGA+AGG | 0.653637 | 8.2:+27374453 | MS.gene011937:CDS |
| AATGACTTTAGAAGCAATGG+AGG | 0.658645 | 8.2:+27374673 | MS.gene011937:CDS |
| AACACACTTGAGGAAGGTGA+CGG | 0.661228 | 8.2:+27374277 | MS.gene011937:CDS |
| AAATGTCAAATTACACCCTG+AGG | 0.666420 | 8.2:+27375383 | MS.gene011937:CDS |
| AAAAGGACATTGGTCCCAAG+AGG | 0.666914 | 8.2:+27375650 | MS.gene011937:CDS |
| AATTGAAGGAAACACACTTG+AGG | 0.669341 | 8.2:+27374267 | MS.gene011937:CDS |
| TGTGAAGATGATGATGGCCA+AGG | 0.683186 | 8.2:+27374793 | MS.gene011937:CDS |
| GAGCTCAGGTAAAAGATGCG+TGG | 0.687675 | 8.2:+27375601 | MS.gene011937:CDS |
| GAAGAGGGTGAAACCAATGG+AGG | 0.700449 | 8.2:+27374016 | MS.gene011937:CDS |
| GAATGTGAAGCTGATGACCA+AGG | 0.711673 | 8.2:+27374409 | MS.gene011937:CDS |
| AATGAATGTGAAGATGACCA+AGG | 0.719006 | 8.2:+27374595 | MS.gene011937:CDS |
| GAATGTGAAGATGATGACCA+AGG | 0.731540 | 8.2:+27374217 | MS.gene011937:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACCAAAGCAAAAAA+AGG | + | chr8.2:27375633-27375652 | MS.gene011937:CDS | 20.0% |
| !!! | AATGATTTTAATAGCAAAGA+AGG | + | chr8.2:27374916-27374935 | MS.gene011937:CDS | 20.0% |
| ! | AAAAGCAATAAAAGTGAAGA+TGG | + | chr8.2:27374112-27374131 | MS.gene011937:CDS | 25.0% |
| ! | AAGTGAAGAAAGTAAACATA+AGG | + | chr8.2:27374744-27374763 | MS.gene011937:CDS | 25.0% |
| ! | AATGAAGAAGAAACTAATTG+AGG | + | chr8.2:27374822-27374841 | MS.gene011937:CDS | 25.0% |
| ! | ATGAAAAAGAAGCTAATTGA+AGG | + | chr8.2:27374439-27374458 | MS.gene011937:CDS | 25.0% |
| ! | CCTTATAAAAAATCACAACA+TGG | + | chr8.2:27375729-27375748 | MS.gene011937:CDS | 25.0% |
| ! | TATATAGATTCTCATGGTTT+GGG | + | chr8.2:27375336-27375355 | MS.gene011937:CDS | 25.0% |
| ! | TTTGACTATATAGATTCTCA+TGG | + | chr8.2:27375330-27375349 | MS.gene011937:CDS | 25.0% |
| !!! | ATAAATTTTGATACTCCTCT+TGG | - | chr8.2:27375668-27375687 | None:intergenic | 25.0% |
| !!! | CCATGTTGTGATTTTTTATA+AGG | - | chr8.2:27375732-27375751 | None:intergenic | 25.0% |
| !!! | TAAATTTTGATACTCCTCTT+GGG | - | chr8.2:27375667-27375686 | None:intergenic | 25.0% |
| !!! | TTACTTTTCTTTTTCTGACA+CGG | - | chr8.2:27374889-27374908 | None:intergenic | 25.0% |
| AACAAATGATCCACCATATT+GGG | + | chr8.2:27376000-27376019 | MS.gene011937:CDS | 30.0% | |
| AAGAAAAACAAGAGAACTGA+AGG | + | chr8.2:27373992-27374011 | MS.gene011937:CDS | 30.0% | |
| AAGAAGAAACTAATTGAGGA+AGG | + | chr8.2:27374826-27374845 | MS.gene011937:CDS | 30.0% | |
| AATGAATGTGAAGATGATGA+TGG | + | chr8.2:27374214-27374233 | MS.gene011937:CDS | 30.0% | |
| ATCATCATCTTCACATTCAT+TGG | - | chr8.2:27374788-27374807 | None:intergenic | 30.0% | |
| CATACTTTGTTAGAAAAGGA+GGG | + | chr8.2:27375477-27375496 | MS.gene011937:CDS | 30.0% | |
| CTATATAGATTCTCATGGTT+TGG | + | chr8.2:27375335-27375354 | MS.gene011937:CDS | 30.0% | |
| GAAAGAAGATGAAAAAGAAG+CGG | + | chr8.2:27374239-27374258 | MS.gene011937:CDS | 30.0% | |
| GTGTCAGAAAAAGAAAAGTA+AGG | + | chr8.2:27374888-27374907 | MS.gene011937:CDS | 30.0% | |
| GTTGCGAGATAATATTTGTT+GGG | + | chr8.2:27375755-27375774 | MS.gene011937:CDS | 30.0% | |
| TAAACGCAAACAAGTAACTT+GGG | + | chr8.2:27375215-27375234 | MS.gene011937:CDS | 30.0% | |
| TCAATAAATTCAAGCTCTTC+AGG | - | chr8.2:27375519-27375538 | None:intergenic | 30.0% | |
| TCATACTTTGTTAGAAAAGG+AGG | + | chr8.2:27375476-27375495 | MS.gene011937:CDS | 30.0% | |
| TCATCATCTTCACATTCATT+GGG | - | chr8.2:27374214-27374233 | None:intergenic | 30.0% | |
| TCTCTATCTTTCAACAAGTT+GGG | - | chr8.2:27376083-27376102 | None:intergenic | 30.0% | |
| TGAGCAATTAACATCAACAT+TGG | + | chr8.2:27375836-27375855 | MS.gene011937:CDS | 30.0% | |
| TGCTCATACTTTGTTAGAAA+AGG | + | chr8.2:27375473-27375492 | MS.gene011937:CDS | 30.0% | |
| TGTTGCGAGATAATATTTGT+TGG | + | chr8.2:27375754-27375773 | MS.gene011937:CDS | 30.0% | |
| TTTGATCTTCTCATCTTCTT+CGG | - | chr8.2:27375301-27375320 | None:intergenic | 30.0% | |
| ! | AAGAAGCACAAACTAATTGA+AGG | + | chr8.2:27374631-27374650 | MS.gene011937:CDS | 30.0% |
| ! | TCTTCTTCATTTTCTTTCCT+TGG | - | chr8.2:27374813-27374832 | None:intergenic | 30.0% |
| ! | TGTAATGACTTTAGAAGCAA+TGG | + | chr8.2:27374670-27374689 | MS.gene011937:CDS | 30.0% |
| !! | TCTTTTTCATCTTCTTTCCT+TGG | - | chr8.2:27374237-27374256 | None:intergenic | 30.0% |
| !! | TCTTTTTCGTCTTTTTTCCT+TGG | - | chr8.2:27374615-27374634 | None:intergenic | 30.0% |
| AAATGTCAAATTACACCCTG+AGG | + | chr8.2:27375383-27375402 | MS.gene011937:CDS | 35.0% | |
| AAGAAACTAATTGAGGAAGG+TGG | + | chr8.2:27374829-27374848 | MS.gene011937:CDS | 35.0% | |
| AATCTACTTGAGCATATGTC+TGG | + | chr8.2:27375954-27375973 | MS.gene011937:CDS | 35.0% | |
| AATGAAACTCCTAGCAATGA+AGG | + | chr8.2:27375048-27375067 | MS.gene011937:CDS | 35.0% | |
| AATGAATGTGAAGATGACCA+AGG | + | chr8.2:27374595-27374614 | MS.gene011937:CDS | 35.0% | |
| AATTGAAGGAAACACACTGA+AGG | + | chr8.2:27374453-27374472 | MS.gene011937:CDS | 35.0% | |
| AATTGAAGGAAACACACTTG+AGG | + | chr8.2:27374267-27374286 | MS.gene011937:CDS | 35.0% | |
| ACAAATGATCCACCATATTG+GGG | + | chr8.2:27376001-27376020 | MS.gene011937:CDS | 35.0% | |
| ACATTGCTTTCGGACATATA+TGG | - | chr8.2:27374046-27374065 | None:intergenic | 35.0% | |
| AGAAACTAATTGAGGAAGGT+GGG | + | chr8.2:27374830-27374849 | MS.gene011937:CDS | 35.0% | |
| AGAAGCAATGAAGGTGATAA+TGG | + | chr8.2:27374304-27374323 | MS.gene011937:CDS | 35.0% | |
| CAGATCAGTTACATTGCTTT+CGG | - | chr8.2:27374056-27374075 | None:intergenic | 35.0% | |
| CCAAAGCAAAAAAAGGACAT+TGG | + | chr8.2:27375640-27375659 | MS.gene011937:CDS | 35.0% | |
| CTAAACGCAAACAAGTAACT+TGG | + | chr8.2:27375214-27375233 | MS.gene011937:CDS | 35.0% | |
| CTCTATCTTTCAACAAGTTG+GGG | - | chr8.2:27376082-27376101 | None:intergenic | 35.0% | |
| CTCTCTATCTTTCAACAAGT+TGG | - | chr8.2:27376084-27376103 | None:intergenic | 35.0% | |
| GAACAAATGATCCACCATAT+TGG | + | chr8.2:27375999-27376018 | MS.gene011937:CDS | 35.0% | |
| GATAGACGCTTTATATGCTT+TGG | + | chr8.2:27375899-27375918 | MS.gene011937:CDS | 35.0% | |
| GTCACTGAAGTTAATGATCA+AGG | + | chr8.2:27374961-27374980 | MS.gene011937:CDS | 35.0% | |
| GTCACTGATGTTAATGATCA+AGG | + | chr8.2:27375093-27375112 | MS.gene011937:CDS | 35.0% | |
| GTTTCATTATGTGCACAGTT+AGG | - | chr8.2:27375036-27375055 | None:intergenic | 35.0% | |
| GTTTCATTATGTGCAGAGTT+AGG | - | chr8.2:27375168-27375187 | None:intergenic | 35.0% | |
| TTATGTGTGCTTTCTTCACT+TGG | - | chr8.2:27374553-27374572 | None:intergenic | 35.0% | |
| TTGATCTTCTCATCTTCTTC+GGG | - | chr8.2:27375300-27375319 | None:intergenic | 35.0% | |
| ! | AAGTGAAGAAAGCACACATA+AGG | + | chr8.2:27374552-27374571 | MS.gene011937:CDS | 35.0% |
| ! | AATATTTGTTGGGAGGCAAT+TGG | + | chr8.2:27375765-27375784 | MS.gene011937:CDS | 35.0% |
| ! | AATGACTTTAGAAGCAATGG+AGG | + | chr8.2:27374673-27374692 | MS.gene011937:CDS | 35.0% |
| ! | AGAAGCAATGATGATGAAGA+TGG | + | chr8.2:27374490-27374509 | MS.gene011937:CDS | 35.0% |
| ! | CATATAAAGCGTCTATCAAG+CGG | - | chr8.2:27375896-27375915 | None:intergenic | 35.0% |
| ! | TCACCATTCCTTTTGATCAA+AGG | - | chr8.2:27374079-27374098 | None:intergenic | 35.0% |
| !! | AATCACAGGTTTGTTGTCAA+AGG | - | chr8.2:27376108-27376127 | None:intergenic | 35.0% |
| !! | CAACTTGTTGAAAGATAGAG+AGG | + | chr8.2:27376082-27376101 | MS.gene011937:CDS | 35.0% |
| !!! | CCAATGTCCTTTTTTTGCTT+TGG | - | chr8.2:27375643-27375662 | None:intergenic | 35.0% |
| !!! | GTTCTCTTGTTTTTCTTGCT+CGG | - | chr8.2:27373989-27374008 | None:intergenic | 35.0% |
| AAACCTAGATCTGCTTGAGA+GGG | + | chr8.2:27375698-27375717 | MS.gene011937:CDS | 40.0% | |
| AAATTACACCCTGAGGTTAG+CGG | + | chr8.2:27375390-27375409 | MS.gene011937:CDS | 40.0% | |
| AACCTGCTCAATGAATGACT+TGG | - | chr8.2:27376036-27376055 | None:intergenic | 40.0% | |
| AAGAAGCGGAAGCTAATTGA+AGG | + | chr8.2:27374253-27374272 | MS.gene011937:CDS | 40.0% | |
| ACTCCTAACTCTGCACATAA+TGG | + | chr8.2:27375186-27375205 | MS.gene011937:CDS | 40.0% | |
| CTGATCTGCCTTTGATCAAA+AGG | + | chr8.2:27374068-27374087 | MS.gene011937:CDS | 40.0% | |
| CTGCCTTTGATCAAAAGGAA+TGG | + | chr8.2:27374073-27374092 | MS.gene011937:CDS | 40.0% | |
| CTTTGTTAGAAAAGGAGGGA+AGG | + | chr8.2:27375481-27375500 | MS.gene011937:CDS | 40.0% | |
| GAAAAGACCTATGAGCAACA+TGG | + | chr8.2:27375537-27375556 | MS.gene011937:CDS | 40.0% | |
| GAATGTGAAGATGATGACCA+AGG | + | chr8.2:27374217-27374236 | MS.gene011937:CDS | 40.0% | |
| GAGGAGAAGTTATGTTGTGA+CGG | + | chr8.2:27375249-27375268 | MS.gene011937:CDS | 40.0% | |
| GAGTGACGAAAGCAAACATA+AGG | + | chr8.2:27374363-27374382 | MS.gene011937:CDS | 40.0% | |
| GTTCCATTATGTGCAGAGTT+AGG | - | chr8.2:27375192-27375211 | None:intergenic | 40.0% | |
| TAAACCTAGATCTGCTTGAG+AGG | + | chr8.2:27375697-27375716 | MS.gene011937:CDS | 40.0% | |
| TATTCTTCTTCGTCTTGCCT+TGG | - | chr8.2:27374864-27374883 | None:intergenic | 40.0% | |
| ! | ACATCAACATTGGTTGCTAG+TGG | + | chr8.2:27375846-27375865 | MS.gene011937:CDS | 40.0% |
| ! | GCGAGATAATATTTGTTGGG+AGG | + | chr8.2:27375758-27375777 | MS.gene011937:CDS | 40.0% |
| ! | TTGCAAAAAGCATACCTGAG+AGG | + | chr8.2:27375427-27375446 | MS.gene011937:CDS | 40.0% |
| AAAAGGACATTGGTCCCAAG+AGG | + | chr8.2:27375650-27375669 | MS.gene011937:CDS | 45.0% | |
| AAAAGTGAAGATGGCGAGCA+AGG | + | chr8.2:27374121-27374140 | MS.gene011937:CDS | 45.0% | |
| AACACACTTGAGGAAGGTGA+CGG | + | chr8.2:27374277-27374296 | MS.gene011937:CDS | 45.0% | |
| AAGAGAACTGAAGGCGAAGA+GGG | + | chr8.2:27374001-27374020 | MS.gene011937:CDS | 45.0% | |
| ACTAGCTCCATGTTGCTCAT+AGG | - | chr8.2:27375547-27375566 | None:intergenic | 45.0% | |
| AGAAGCAATGGAGGTGAAGA+GGG | + | chr8.2:27374682-27374701 | MS.gene011937:CDS | 45.0% | |
| AGTAACTTGGGCTGATGAAG+TGG | + | chr8.2:27375227-27375246 | MS.gene011937:CDS | 45.0% | |
| ATGAGCAACATGGAGCTAGT+TGG | + | chr8.2:27375547-27375566 | MS.gene011937:CDS | 45.0% | |
| CATATATGGATCGCCTCCAT+TGG | - | chr8.2:27374032-27374051 | None:intergenic | 45.0% | |
| CGTCGATACACACTCTCATA+AGG | - | chr8.2:27375453-27375472 | None:intergenic | 45.0% | |
| GAAGGAAACACACTTGAGGA+AGG | + | chr8.2:27374271-27374290 | MS.gene011937:CDS | 45.0% | |
| GAATGTGAAGCTGATGACCA+AGG | + | chr8.2:27374409-27374428 | MS.gene011937:CDS | 45.0% | |
| TAGAAGCAATGGAGGTGAAG+AGG | + | chr8.2:27374681-27374700 | MS.gene011937:CDS | 45.0% | |
| TCAGCATCACCTTCATTGCT+AGG | - | chr8.2:27375060-27375079 | None:intergenic | 45.0% | |
| TGATGTGTGCAGGAAACGAT+GGG | + | chr8.2:27375977-27375996 | MS.gene011937:CDS | 45.0% | |
| TTTGGGTAAAAGTCGAGCTC+AGG | + | chr8.2:27375587-27375606 | MS.gene011937:CDS | 45.0% | |
| ! | AAAAGGAGGGAAGGTGTAAG+TGG | + | chr8.2:27375490-27375509 | MS.gene011937:CDS | 45.0% |
| ! | ATATGTCTGGTGATGTGTGC+AGG | + | chr8.2:27375967-27375986 | MS.gene011937:CDS | 45.0% |
| ! | CATTGGTTGCTAGTGGTGAT+TGG | + | chr8.2:27375853-27375872 | MS.gene011937:CDS | 45.0% |
| ! | CTGCTCAATGAATGACTTGG+CGG | - | chr8.2:27376033-27376052 | None:intergenic | 45.0% |
| ! | GTGCATTTTGCTGCAAGAAG+TGG | + | chr8.2:27375811-27375830 | MS.gene011937:CDS | 45.0% |
| !! | GACGGCTTTAGAAGCAATGA+AGG | + | chr8.2:27374295-27374314 | MS.gene011937:CDS | 45.0% |
| !! | TGTGAAGATGATGATGGCCA+AGG | + | chr8.2:27374793-27374812 | MS.gene011937:CDS | 45.0% |
| AACTTGGGCTGATGAAGTGG+AGG | + | chr8.2:27375230-27375249 | MS.gene011937:CDS | 50.0% | |
| ACACTCTCATAAGGCCTCTC+AGG | - | chr8.2:27375444-27375463 | None:intergenic | 50.0% | |
| ACGGCTTATTGCGTGGGAAA+AGG | + | chr8.2:27375268-27375287 | MS.gene011937:CDS | 50.0% | |
| AGAGCAGTAGCTGACGCTTT+GGG | + | chr8.2:27375570-27375589 | MS.gene011937:CDS | 50.0% | |
| CAAGAGAACTGAAGGCGAAG+AGG | + | chr8.2:27374000-27374019 | MS.gene011937:CDS | 50.0% | |
| CGCCAAGTCATTCATTGAGC+AGG | + | chr8.2:27376031-27376050 | MS.gene011937:CDS | 50.0% | |
| GAAGAGGGTGAAACCAATGG+AGG | + | chr8.2:27374016-27374035 | MS.gene011937:CDS | 50.0% | |
| GAGCTCAGGTAAAAGATGCG+TGG | + | chr8.2:27375601-27375620 | MS.gene011937:CDS | 50.0% | |
| GGAGGCAATTGGTCACAAGT+TGG | + | chr8.2:27375776-27375795 | MS.gene011937:CDS | 50.0% | |
| GGGAGACGAAGGTCTTGATA+TGG | + | chr8.2:27375356-27375375 | MS.gene011937:CDS | 50.0% | |
| GTGATGTGTGCAGGAAACGA+TGG | + | chr8.2:27375976-27375995 | MS.gene011937:CDS | 50.0% | |
| GTTGTGACGGCTTATTGCGT+GGG | + | chr8.2:27375262-27375281 | MS.gene011937:CDS | 50.0% | |
| TAGCCCTCTCAAGCAGATCT+AGG | - | chr8.2:27375704-27375723 | None:intergenic | 50.0% | |
| TGTTGTGACGGCTTATTGCG+TGG | + | chr8.2:27375261-27375280 | MS.gene011937:CDS | 50.0% | |
| ! | TCTCATGGTTTGGGAGACGA+AGG | + | chr8.2:27375345-27375364 | MS.gene011937:CDS | 50.0% |
| ! | TGCTTTGGATGCTTGCTGCA+TGG | + | chr8.2:27375914-27375933 | MS.gene011937:CDS | 50.0% |
| ! | TTTGGATGCTTGCTGCATGG+AGG | + | chr8.2:27375917-27375936 | MS.gene011937:CDS | 50.0% |
| !! | GAAGGTGATAATGGCGAGCA+GGG | + | chr8.2:27374313-27374332 | MS.gene011937:CDS | 50.0% |
| !! | TGAAGGTGATAATGGCGAGC+AGG | + | chr8.2:27374312-27374331 | MS.gene011937:CDS | 50.0% |
| CTGCATGGAGGAGGTAGACT+GGG | + | chr8.2:27375929-27375948 | MS.gene011937:CDS | 55.0% | |
| GAAGGTGGGAATCGTGACCA+AGG | + | chr8.2:27374844-27374863 | MS.gene011937:CDS | 55.0% | |
| GAGAGCAGTAGCTGACGCTT+TGG | + | chr8.2:27375569-27375588 | MS.gene011937:CDS | 55.0% | |
| GGCGAAGAGGGTGAAACCAA+TGG | + | chr8.2:27374013-27374032 | MS.gene011937:CDS | 55.0% | |
| TCCAACAGCCGCTAACCTCA+GGG | - | chr8.2:27375401-27375420 | None:intergenic | 55.0% | |
| TTCCAACAGCCGCTAACCTC+AGG | - | chr8.2:27375402-27375421 | None:intergenic | 55.0% | |
| ACCCTGAGGTTAGCGGCTGT+TGG | + | chr8.2:27375397-27375416 | MS.gene011937:CDS | 60.0% | |
| CGGCATGCTCCCCAATATGG+TGG | - | chr8.2:27376013-27376032 | None:intergenic | 60.0% | |
| GCTGCATGGAGGAGGTAGAC+TGG | + | chr8.2:27375928-27375947 | MS.gene011937:CDS | 60.0% | |
| TGGCGGCATGCTCCCCAATA+TGG | - | chr8.2:27376016-27376035 | None:intergenic | 60.0% | |
| ! | GGATGCTTGCTGCATGGAGG+AGG | + | chr8.2:27375920-27375939 | MS.gene011937:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 27373977 | 27376133 | 27373977 | ID=MS.gene011937 |
| chr8.2 | mRNA | 27373977 | 27376133 | 27373977 | ID=MS.gene011937.t1;Parent=MS.gene011937 |
| chr8.2 | exon | 27373977 | 27376133 | 27373977 | ID=MS.gene011937.t1.exon1;Parent=MS.gene011937.t1 |
| chr8.2 | CDS | 27373977 | 27376133 | 27373977 | ID=cds.MS.gene011937.t1;Parent=MS.gene011937.t1 |
| Gene Sequence |
| Protein sequence |
