AlfalfaGEDB | MS.gene011937

M. sativa cultivar XinJiangDaYe / MS.gene011937

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34 PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011937.t1	RHN45016.1	88	734	67	2	1	718	1	729	1.00E-180	643.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011937.t1	Q9Y222	25.4	256	174	7	439	689	156	399	1.4e-16	89.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011937.t1	A0A396GV57	88.0	734	67	2	1	718	1	729	7.5e-181	643.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene011937.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011937.t1	MTR_8g077990	87.755	735	31	5	1	718	1	693	0.0	1114
MS.gene011937.t1	MTR_1g076600	94.059	101	6	0	618	718	55	155	2.67e-65	213
MS.gene011937.t1	MTR_7g029435	92.391	92	7	0	627	718	1	92	3.65e-56	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011937.t1	AT5G41020	54.770	283	127	1	433	715	302	583	1.89e-111	349

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Find 124 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATAAAAGTGAAGA+TGG	0.511576	8.2:+27374112	MS.gene011937:CDS
AAAAGGACATTGGTCCCAAG+AGG	0.666914	8.2:+27375650	MS.gene011937:CDS
AAAAGGAGGGAAGGTGTAAG+TGG	0.481580	8.2:+27375490	MS.gene011937:CDS
AAAAGTGAAGATGGCGAGCA+AGG	0.538269	8.2:+27374121	MS.gene011937:CDS
AAACCTAGATCTGCTTGAGA+GGG	0.602034	8.2:+27375698	MS.gene011937:CDS
AAATGTCAAATTACACCCTG+AGG	0.666420	8.2:+27375383	MS.gene011937:CDS
AAATTACACCCTGAGGTTAG+CGG	0.591381	8.2:+27375390	MS.gene011937:CDS
AACAAACCTGTGATTTGTTG+AGG	0.586181	8.2:+27376113	MS.gene011937:CDS
AACAAATGATCCACCATATT+GGG	0.286872	8.2:+27376000	MS.gene011937:CDS
AACACACTTGAGGAAGGTGA+CGG	0.661228	8.2:+27374277	MS.gene011937:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGATCCACCATATT+GGG	+	chr8.2:27376000-27376019	MS.gene011937:CDS	30.0%
AAGAAAAACAAGAGAACTGA+AGG	+	chr8.2:27373992-27374011	MS.gene011937:CDS	30.0%
AAGAAGAAACTAATTGAGGA+AGG	+	chr8.2:27374826-27374845	MS.gene011937:CDS	30.0%
AATGAATGTGAAGATGATGA+TGG	+	chr8.2:27374214-27374233	MS.gene011937:CDS	30.0%
ATCATCATCTTCACATTCAT+TGG	-	chr8.2:27374788-27374807	None:intergenic	30.0%
CATACTTTGTTAGAAAAGGA+GGG	+	chr8.2:27375477-27375496	MS.gene011937:CDS	30.0%
CTATATAGATTCTCATGGTT+TGG	+	chr8.2:27375335-27375354	MS.gene011937:CDS	30.0%
GAAAGAAGATGAAAAAGAAG+CGG	+	chr8.2:27374239-27374258	MS.gene011937:CDS	30.0%
GTGTCAGAAAAAGAAAAGTA+AGG	+	chr8.2:27374888-27374907	MS.gene011937:CDS	30.0%
GTTGCGAGATAATATTTGTT+GGG	+	chr8.2:27375755-27375774	MS.gene011937:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	27373977	27376133	27373977	ID=MS.gene011937
chr8.2	mRNA	27373977	27376133	27373977	ID=MS.gene011937.t1;Parent=MS.gene011937
chr8.2	exon	27373977	27376133	27373977	ID=MS.gene011937.t1.exon1;Parent=MS.gene011937.t1
chr8.2	CDS	27373977	27376133	27373977	ID=cds.MS.gene011937.t1;Parent=MS.gene011937.t1

Gene Sequence

>MS.gene011937

ATGAAGACTCCGAGCAAGAAAAACAAGAGAACTGAAGGCGAAGAGGGTGAAACCAATGGAGGCGATCCATATATGTCCGAAAGCAATGTAACTGATCTGCCTTTGATCAAAAGGAATGGTGATCAACATTTGATCAAAAGCAATAAAAGTGAAGATGGCGAGCAAGGCAAAAAGAAAAAGAAAAAGAAGAAACTGAGTGAAGAAAGCAATCATAAGAAGTATAATGAGTTCAATAGCAATGAATGTGAAGATGATGACCAAGGAAAGAAGATGAAAAAGAAGCGGAAGCTAATTGAAGGAAACACACTTGAGGAAGGTGACGGCTTTAGAAGCAATGAAGGTGATAATGGCGAGCAGGGAAAGAAGAAAAAGAAAAAGAAGAAATTGAGTGACGAAAGCAAACATAAGGAGTATAACGAGTTCAAAAGTAATGAATGTGAAGCTGATGACCAAGGAAAGAAGATGAAAAAGAAGCTAATTGAAGGAAACACACTGAAGGAATGTAATGACTTCAGAAGCAATGATGATGAAGATGGTGAGCGAGAGAAAAAGATAAAGAAAAAGAAGAAGAAACCAAGTGAAGAAAGCACACATAAGGAGTATAGTGAGTTCAAAAGCAATGAATGTGAAGATGACCAAGGAAAAAAGACGAAAAAGAAGCACAAACTAATTGAAGGAAGCACACGTACTGAGTGTAATGACTTTAGAAGCAATGGAGGTGAAGAGGGTGAGCAAGACAAGAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGTATAGCAAGTTTGAACCCAATGAATGTGAAGATGATGATGGCCAAGGAAAGAAAATGAAGAAGAAACTAATTGAGGAAGGTGGGAATCGTGACCAAGGCAAGACGAAGAAGAATAAACCGTGTCAGAAAAAGAAAAGTAAGGAGAACAATGATTTTAATAGCAAAGAAGGTGATGCTGATACTTGTTTCTCTGTCACTGAAGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGACAGTTACAAGCGAGTCTCCTAACTGTGCACATAATGAAACTCCTAGCAATGAAGGTGATGCTGATGCTTGTTTCTCTGTCACTGATGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAACGACAGTTACAAGCGAGTCTCCTAACTCTGCACATAATGAAACTCCTAACTCTGCACATAATGGAACATCTAAACGCAAACAAGTAACTTGGGCTGATGAAGTGGAGGAGAAGTTATGTTGTGACGGCTTATTGCGTGGGAAAAGGTATACACCCGAAGAAGATGAGAAGATCAAAGCAGCTGTTTTTGACTATATAGATTCTCATGGTTTGGGAGACGAAGGTCTTGATATGGTTCTAAATGTCAAATTACACCCTGAGGTTAGCGGCTGTTGGAAAGAAATTGCAAAAAGCATACCTGAGAGGCCTTATGAGAGTGTGTATCGACGTGCTCATACTTTGTTAGAAAAGGAGGGAAGGTGTAAGTGGACACCTGAAGAGCTTGAATTTATTGAAAAGACCTATGAGCAACATGGAGCTAGTTGGAGAGCAGTAGCTGACGCTTTGGGTAAAAGTCGAGCTCAGGTAAAAGATGCGTGGCGCAGATTGAAATATACCAAAGCAAAAAAAGGACATTGGTCCCAAGAGGAGTATCAAAATTTATTTAACTTAGTAAACCTAGATCTGCTTGAGAGGGCTAAAGAGCCTTATAAAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAGTTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGCAATTAACATCAACATTGGTTGCTAGTGGTGATTGGTGTGATACTGATGACTTCCGCTTGATAGACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATATGTCTGGTGATGTGTGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCCGCCAAGTCATTCATTGAGCAGGTTGAAGTTCTTGCAAAGAGATTCTGCCCCAACTTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGA

Protein sequence

>MS.gene011937.t1

MKTPSKKNKRTEGEEGETNGGDPYMSESNVTDLPLIKRNGDQHLIKSNKSEDGEQGKKKKKKKKLSEESNHKKYNEFNSNECEDDDQGKKMKKKRKLIEGNTLEEGDGFRSNEGDNGEQGKKKKKKKKLSDESKHKEYNEFKSNECEADDQGKKMKKKLIEGNTLKECNDFRSNDDEDGEREKKIKKKKKKPSEESTHKEYSEFKSNECEDDQGKKTKKKHKLIEGSTRTECNDFRSNGGEEGEQDKKMKKKKKKLSEESKHKEYSKFEPNECEDDDGQGKKMKKKLIEEGGNRDQGKTKKNKPCQKKKSKENNDFNSKEGDADTCFSVTEVNDQGKKMKKKKKAKTVTSESPNCAHNETPSNEGDADACFSVTDVNDQGKKMKKKKKATTVTSESPNSAHNETPNSAHNGTSKRKQVTWADEVEEKLCCDGLLRGKRYTPEEDEKIKAAVFDYIDSHGLGDEGLDMVLNVKLHPEVSGCWKEIAKSIPERPYESVYRRAHTLLEKEGRCKWTPEELEFIEKTYEQHGASWRAVADALGKSRAQVKDAWRRLKYTKAKKGHWSQEEYQNLFNLVNLDLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSTLVASGDWCDTDDFRLIDALYALDACCMEEVDWDNLLEHMSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVIC