AlfalfaGEDB | MS.gene011946

M. sativa cultivar XinJiangDaYe / MS.gene011946

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011946.t1	XP_003629471.1	98.3	409	7	0	284	692	256	664	1.50E-232	815.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011946.t1	Q8GX23	63.5	419	132	6	287	696	235	641	3.1e-146	520.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011946.t1	G7LEU4	98.3	409	7	0	284	692	256	664	1.1e-232	815.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011946.t1	MTR_8g077850	85.190	709	40	5	2	692	3	664	0.0	1151
MS.gene011946.t1	MTR_5g019940	72.391	460	103	9	237	690	137	578	0.0	625
MS.gene011946.t1	MTR_3g116450	53.069	505	188	11	200	686	136	609	1.27e-159	476
MS.gene011946.t1	MTR_5g034210	59.012	344	126	4	353	692	54	386	8.46e-143	423
MS.gene011946.t1	MTR_5g034210	59.012	344	126	4	353	692	47	379	1.11e-142	422
MS.gene011946.t1	MTR_7g018890	48.180	467	186	9	226	690	298	710	3.33e-142	434
MS.gene011946.t1	MTR_5g034210	59.012	344	126	4	353	692	134	466	4.69e-141	422
MS.gene011946.t1	MTR_8g064690	60.542	332	119	3	353	683	299	619	8.84e-141	427
MS.gene011946.t1	MTR_6g088510	62.626	297	107	2	353	648	86	379	2.36e-131	394
MS.gene011946.t1	MTR_0194s0030	46.581	468	196	6	226	693	234	647	7.70e-129	396

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011946.t1	AT2G18470	58.925	521	183	12	181	691	109	608	0.0	558
MS.gene011946.t1	AT2G18470	58.925	521	183	12	181	691	109	608	0.0	558
MS.gene011946.t1	AT2G18470	58.925	521	183	12	181	691	109	608	0.0	558
MS.gene011946.t1	AT4G34440	59.827	463	149	8	243	696	207	641	0.0	549
MS.gene011946.t1	AT4G34440	59.827	463	149	8	243	696	207	641	0.0	549
MS.gene011946.t1	AT3G24550	68.889	360	104	6	341	696	256	611	4.72e-177	520
MS.gene011946.t1	AT1G49270	54.331	508	167	10	228	691	173	659	2.54e-166	494
MS.gene011946.t1	AT1G52290	64.553	347	114	5	353	695	131	472	1.17e-165	486
MS.gene011946.t1	AT3G24540	65.909	308	103	2	343	649	161	467	1.68e-150	446
MS.gene011946.t1	AT1G23540	49.788	472	197	9	225	688	245	684	5.18e-150	453

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Find 236 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTAAAAGCGGGTAG+CGG	0.573445	8.2:+27522513	MS.gene011946:CDS
AAACACCACTTCCTCCATTA+GGG	0.342760	8.2:-27522248	None:intergenic
AAATACCAACGACTAAAAGA+AGG	0.578322	8.2:-27520729	None:intergenic
AAATCTCCAGCGCCGCAGAC+CGG	0.572881	8.2:+27523990	MS.gene011946:CDS
AAATCTGATGTATTCTCATT+TGG	0.304225	8.2:+27523495	MS.gene011946:CDS
AACAATCCAACACCTTCAGG+AGG	0.673873	8.2:+27520532	MS.gene011946:CDS
AACAATCCAACTCCTTCTGG+AGG	0.628800	8.2:+27520367	MS.gene011946:CDS
AACAATCCAGCCCCTTCAGG+AGG	0.622732	8.2:+27520421	MS.gene011946:CDS
AACAATCCATCCCCTTCAGG+AGG	0.642234	8.2:+27520478	MS.gene011946:CDS
AACAATCCATCTCCTACAGA+AGG	0.599779	8.2:+27520286	MS.gene011946:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACCAACGACTAAAAGA+AGG	-	chr8.2:27520732-27520751	None:intergenic	30.0%
ACCAAGTGAATTTAAGTAAC+CGG	+	chr8.2:27521243-27521262	MS.gene011946:intron	30.0%
AGCAAAAATGAGAAAGATAG+TGG	-	chr8.2:27522973-27522992	None:intergenic	30.0%
AGTCAGTCATGTCTTAATTT+AGG	+	chr8.2:27521760-27521779	MS.gene011946:intron	30.0%
ATACCTAAACTATTTGGTCA+AGG	-	chr8.2:27521657-27521676	None:intergenic	30.0%
ATCACATAGTACAAATAAGG+AGG	+	chr8.2:27520663-27520682	MS.gene011946:CDS	30.0%
ATCTCTTTCAAAACACTCTT+GGG	-	chr8.2:27521003-27521022	None:intergenic	30.0%
ATCTGATGTATTCTCATTTG+GGG	+	chr8.2:27523497-27523516	MS.gene011946:CDS	30.0%
ATTTCACCACTATTCATTAG+AGG	-	chr8.2:27522288-27522307	None:intergenic	30.0%
CATTATCCATCGTGATATTA+AGG	+	chr8.2:27523021-27523040	MS.gene011946:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	27520022	27524124	27520022	ID=MS.gene011946
chr8.2	mRNA	27520022	27524124	27520022	ID=MS.gene011946.t1;Parent=MS.gene011946
chr8.2	exon	27520022	27520826	27520022	ID=MS.gene011946.t1.exon1;Parent=MS.gene011946.t1
chr8.2	CDS	27520022	27520826	27520022	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1
chr8.2	exon	27522142	27522690	27522142	ID=MS.gene011946.t1.exon2;Parent=MS.gene011946.t1
chr8.2	CDS	27522142	27522690	27522142	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1
chr8.2	exon	27522827	27522913	27522827	ID=MS.gene011946.t1.exon3;Parent=MS.gene011946.t1
chr8.2	CDS	27522827	27522913	27522827	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1
chr8.2	exon	27523011	27523081	27523011	ID=MS.gene011946.t1.exon4;Parent=MS.gene011946.t1
chr8.2	CDS	27523011	27523081	27523011	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1
chr8.2	exon	27523234	27523310	27523234	ID=MS.gene011946.t1.exon5;Parent=MS.gene011946.t1
chr8.2	CDS	27523234	27523310	27523234	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1
chr8.2	exon	27523452	27523596	27523452	ID=MS.gene011946.t1.exon6;Parent=MS.gene011946.t1
chr8.2	CDS	27523452	27523596	27523452	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1
chr8.2	exon	27523678	27523842	27523678	ID=MS.gene011946.t1.exon7;Parent=MS.gene011946.t1
chr8.2	CDS	27523678	27523842	27523678	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1
chr8.2	exon	27523933	27524124	27523933	ID=MS.gene011946.t1.exon8;Parent=MS.gene011946.t1
chr8.2	CDS	27523933	27524124	27523933	ID=cds.MS.gene011946.t1;Parent=MS.gene011946.t1

Gene Sequence

>MS.gene011946

ATGCCACACAACAACAGTCCGGATAATTCCTCGCCCGATAACGCTACACCTGACGACGCTGATGGATCAGATTCTAGAAATTCATCTCCTTCCGGAGGAGGGAGCAATCCACCTTCTTCTGATGGAGGGAGCAATCCACCTCCTTCTGATGGAGGGAGCAACCCATCTCCTTCGGATGGAGGGAGCAATCCACCTCCTTCTGATGGAGGGAGCAACCCACCTCCTTCGGATGGAGGGAGCAATCCATCTCCTTCTGAAGGAGGGAACAATCCATCTCCTACAGAAGGAGGAAACAGTTCACCTCCTTCTGGAGGAGGAAATAATCCATCTCCTTCTGGAGGAGGGAACAATCCAACTCCTTCTGGAGGAGGGAACATTTCGCCTCCTTCAGGAGGAGGGAACAATCCAGCCCCTTCAGGAGGAGGAGGAGGAAATAATCCACCTTCAGAAGGCGGGAACAATCCATCCCCTTCAGGAGGAGGAGGAAACAATTCACCTTCAGGAGGAGGGAACAATCCAACACCTTCAGGAGGAGGGAACAATTCACCTTCTGGAGGAGGGAACAGTTCTCCTTCATCACAAAAACCAGGTTCAGGAGGAGGGAACAATTCACCTTCTGTAGGAAAGAACAGTTCTTCTGAATCACATAGTACAAATAAGGAGGATAATAGTAATGTACTAGTTGGAGTTATTGTTGGATCAGTTGTCCTTCTTTTAGTCGTTGGTATTTGTCTCATTTGCTCGAGGAGAAAGAAGAGAAAGCAACCTTATTATTATGGTCCTCCAGATCCTTCACTTGCAAAAGGTGATTACAAATCCCTTCATCTATTAATTGTTTTAGTTTGAGTACTTTCTTAGTTAGTTATGTATCATATCATATCATATCATATCATTGGTTAATTGGGACGAACAATTATAAACTTAATAGCATGTGAATGAAACAAGTTGCTTATATACTAATTAATGAAGCTACTTATACCCAAGAGTGTTTTGAAAGAGATAACTTTGAACTTTTCCAGCTTAATTAACTAAAGATTTTGGGTTCTAATATAATTACGTTTTGAGAAAAAACTTTGTTGTTCATTGTAGTTACATGTAATTAGAGGGATTAATCACTTTTGTTGCATGCAAAAATGACGAGTTTCCACCAAAAAATAATAAGGCTTGTTTGGTGTGTTAGAGTATGGAACCTAGACCATCAAAGTTGAAGACATTTTTTCAACCAAGTGAATTTAAGTAACCGGTAATTAGGCCAGTTATATTATATCAGTAAATAATTTGACATTACAATTATAAAATCAAGACAACTTAATTAGCACATCATAGTGAATTAAACTATAGTCTATTTGATTTAGAAAATATTTTGTTTTCATTTCATACGAAAATGACGGGCTCATAGTTTTTCCTTTGTTTCTTATTTTCAAAGATTTTGTATATATAGTACATGACAAAGTGAAGACCACTTTCTTTGAGAGTGAGTATCTTGTACAAATAGTTGAAAAAAGAAAAGAAAACATGTTGAAGTTAATTGAAAACACATTGTATATATAGAATACTTGATGTTCATTTAAATAATTGATCACTTTCAAGATATATTTTTTCACACACACCAATGACGGTGAGGGATCGAACCCTTGACCAAATAGTTTAGGTATTCAAACATCTACGACTTTTATCACATCATGTTAGTATTTAAAGTAAAATGAATAAAAATTAAAAACAAAAGGACGTTTACTCAAGTCAGTCATGTCTTAATTTAGGTTAATTTATGCAATTATAATTTCAATGTAATAGATTTTTTCATAGGCAGTGCATGTCAATTGTAGTATCTATGCATGCCAAAGAGAGAGAGAGAGAGAGAATATTATGATCATCATACACTTGGCATTATGCATACTTATATCATGTTTAGAATAATTTATTTGAAGAACAATTGGAAGAATAATGAAGACTGATTCTTGATTGTTAGACTACTTATTTCATACTTCCGAGCAAGGTCATTCATCACAATGTAAGTATGTTCTGCTGGTTAAAAATGTTTGACACAAAAAACTTAAATAAGCAAATTAAATAATTGATTGATATATAGTTATTATGGGGATCTAAAATAACTTGCACAGGGAACAATTATTACAACAGTGGACAACATCCTCCTCCTCATCCAAATTGGCAAGGACCTCCATCAGGCCCACATGGAATGGACCATGTTGTTAGAGTTCAACAAAACCCTAATGGAGGAAGTGGTGTTTGGGGTGCACCACACCCTCTAATGAATAGTGGTGAAATGAGTTCTAATTACTCCTATGGAATGGGACCACCAGGTTCTATCCAATCTTCTCCAGGCTTATCTCTTACTCTCAAGGGTGGTACCTTCACTTATGAAGAATTGGCATCTGCTACAAAAGGTTTTGCTAATGAGAATATTATAGGACAAGGTGGTTTTGGTTATGTCCATAAGGGAATTTTGCCTACCGGAAAGGAAATTGCTGTTAAAAGTTTAAAAGCGGGTAGCGGACAAGGCGAACGTGAGTTTCAAGCTGAGATTGATATCATTAGTCGTGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGTGTTTCTGGTGGACAGAGAATGTTGGTTTATGAATTTGTTCCAAATAAAACTTTGGAATATCACCTTCATGGTATGTGTATTGTGGTATAAATTGTTTTGCTTTTGATTTAATATATTTTTATGCATGTCACTATATTGTAGTTATTATAGATATGGACACTTATGAAATAAATAATGATGCCAATATCTAATGTATTTGATTACAGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAGAATTGCACTAGGATCTGCTAGAGGACTTGCTTACCTTCATGAAGATTGTAAGATTAAGATACATCATTTCACATAAAAACATTTTTTTTTTAATAGTTTTCTGCCACTATCTTTCTCATTTTTGCTTTATTTTGTGTTATTCAGGTAGTCCTCGCATTATCCATCGTGATATTAAGGCTGCTAATGTTCTAATTGATGATAGCTTCGAAGCTAAGGTTTCTCATATTTACATTTGATATTCGTTGAGTTTATTATCTATATATTATACTTTAATATTTACTCACTCTTGTTACTATGTTCTTATCAATATATTACCAATATATTTTCTTGTCGAAGATTGATTATACCAATTATTCATCGTAAATAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACTGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTAATTTTTCATTCTACGCTCTAAATACTTGCGAAAGAGTCATGCTAACTTGTAATCTAAGAACGCAAGTTAAGAAGATAAAAATAGAATTAAAAAAATAATCTTTATGTATTGACATCCAAAATTTTCATGTTGACACAGGTATATGGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTATTCTCATTTGGGGTTATGCTACTAGAACTCTTAACTGGAAAAAGACCTTTGGATTTAACCAATGCCATGGACGAAAGCTTAGTTGACTGGGTTAGTACTATACTATTCTATCTTTCATCGATCGATAAAAAAATTAGTATAAAAATTAATATGAAATTGTGTACTGGGCAGGCTCGACCACTTTTGAGTCGTGCATTGGAGGAGGATGGAAACTTTGCAGAATTGGTGGATCCATTTTTGGAAGGAAATTACGATCATCAAGAAATGATAAGATTGGCAGCTTGTGCTGCTAGTAGCATTCGTCATTCTGCTAAAAAGCGTTCAAAAATGAGCCAGGTAAAATAATATGATGCTTAATCATTAACAATTTATAAAGATCAAGTTAATTGATGTCATATTTTTTTTGTATAACTCAATTATGTGCAGATAGTAAGAGCATTAGAAGGAGATGTATCACTAGATGACTTGAAGGAAAGCATGATAAAATCTCCAGCGCCGCAGACCGGTGTTTATACCTCTTCAGGCTCAGAATATGATACAATGCAATACAACGCAGATATGGCAAAGTTCAGAAGACAAATAATGTCAGGTCAAGAATTTGATAGCGGTGAACACTAG

Protein sequence

>MS.gene011946.t1

MPHNNSPDNSSPDNATPDDADGSDSRNSSPSGGGSNPPSSDGGSNPPPSDGGSNPSPSDGGSNPPPSDGGSNPPPSDGGSNPSPSEGGNNPSPTEGGNSSPPSGGGNNPSPSGGGNNPTPSGGGNISPPSGGGNNPAPSGGGGGNNPPSEGGNNPSPSGGGGNNSPSGGGNNPTPSGGGNNSPSGGGNSSPSSQKPGSGGGNNSPSVGKNSSSESHSTNKEDNSNVLVGVIVGSVVLLLVVGICLICSRRKKRKQPYYYGPPDPSLAKGNNYYNSGQHPPPHPNWQGPPSGPHGMDHVVRVQQNPNGGSGVWGAPHPLMNSGEMSSNYSYGMGPPGSIQSSPGLSLTLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGILPTGKEIAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEYHLHGKGVPTMDWPTRMRIALGSARGLAYLHEDCSPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLTNAMDESLVDWARPLLSRALEEDGNFAELVDPFLEGNYDHQEMIRLAACAASSIRHSAKKRSKMSQIVRALEGDVSLDDLKESMIKSPAPQTGVYTSSGSEYDTMQYNADMAKFRRQIMSGQEFDSGEH