AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011983


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011983.t1 MTR_8g077680 97.382 573 13 1 1 571 353 925 0.0 1120
MS.gene011983.t1 MTR_5g020140 71.853 572 154 2 1 571 118 683 0.0 795
MS.gene011983.t1 MTR_8g077675 92.593 405 25 2 581 985 1 400 0.0 770
MS.gene011983.t1 MTR_8g077195 69.927 409 110 7 581 980 1 405 0.0 556
MS.gene011983.t1 MTR_5g020140 55.594 572 166 7 1 571 349 833 9.99e-178 540
MS.gene011983.t1 MTR_8g077620 63.438 413 115 10 581 982 1 388 3.84e-161 479
MS.gene011983.t1 MTR_5g020580 57.005 414 159 10 581 980 1 409 1.98e-146 442
MS.gene011983.t1 MTR_1g022370 45.561 428 192 11 581 980 1 415 4.84e-105 334
MS.gene011983.t1 MTR_8g077650 51.938 387 106 13 612 979 3 328 1.88e-104 329
MS.gene011983.t1 MTR_1g098790 41.435 432 201 13 579 980 15 424 3.86e-84 278
MS.gene011983.t1 MTR_2g007930 40.618 453 201 16 559 980 5 420 9.28e-84 277
MS.gene011983.t1 MTR_2g020280 42.703 370 183 12 623 980 34 386 7.25e-83 273
MS.gene011983.t1 MTR_8g077640 63.203 231 59 4 571 778 33 260 3.74e-75 252
MS.gene011983.t1 MTR_8g077640 49.219 128 58 4 853 977 260 383 1.18e-22 101
MS.gene011983.t1 MTR_1g088960 39.243 423 206 17 581 980 1 395 5.11e-75 253
MS.gene011983.t1 MTR_2g076200 41.737 357 170 9 628 980 42 364 7.16e-72 243
MS.gene011983.t1 MTR_2g076210 37.366 372 190 11 616 980 25 360 1.23e-59 209
MS.gene011983.t1 MTR_2g020280 40.199 301 151 12 692 980 4 287 2.60e-55 194
MS.gene011983.t1 MTR_1g023800 51.748 143 61 3 581 717 1 141 1.48e-38 141
MS.gene011983.t1 MTR_8g072800 61.404 57 22 0 179 235 34 90 6.23e-16 75.9
MS.gene011983.t1 MTR_0210s0010 41.837 98 52 3 672 769 10 102 3.90e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011983.t1 AT4G36630 60.285 632 227 8 1 622 354 971 0.0 706
MS.gene011983.t1 AT4G36630 63.869 548 188 7 1 538 354 901 0.0 657
MS.gene011983.t1 AT2G18280 47.059 408 186 15 581 980 1 386 1.05e-101 324
MS.gene011983.t1 AT2G18280 47.059 408 186 15 581 980 1 386 1.05e-101 324
MS.gene011983.t1 AT1G47270 45.135 370 168 12 621 980 37 381 8.97e-88 286
MS.gene011983.t1 AT1G47270 45.135 370 168 12 621 980 61 405 9.83e-88 287
MS.gene011983.t1 AT1G47270 45.135 370 168 12 621 980 62 406 1.00e-87 287
MS.gene011983.t1 AT1G25280 42.132 394 183 12 623 980 54 438 6.39e-83 276
MS.gene011983.t1 AT2G47900 39.320 412 225 12 581 980 1 399 1.26e-81 271
MS.gene011983.t1 AT2G47900 39.320 412 225 12 581 980 1 399 1.26e-81 271
MS.gene011983.t1 AT1G76900 39.662 474 204 18 559 980 5 448 1.32e-81 272
MS.gene011983.t1 AT1G76900 39.662 474 204 18 559 980 5 448 1.32e-81 272
MS.gene011983.t1 AT1G76900 39.662 474 204 18 559 980 5 448 1.32e-81 272
MS.gene011983.t1 AT2G47900 39.225 413 225 13 581 980 1 400 5.75e-80 266
MS.gene011983.t1 AT1G43640 38.693 398 210 11 608 980 34 422 6.67e-74 250
MS.gene011983.t1 AT1G53320 40.000 360 178 8 628 980 44 372 7.65e-68 232
MS.gene011983.t1 AT1G43640 38.630 365 191 10 640 980 1 356 2.33e-67 230
MS.gene011983.t1 AT5G18680 38.649 370 192 16 624 980 35 382 1.49e-63 220
MS.gene011983.t1 AT3G06380 38.082 365 190 14 628 980 33 373 4.15e-63 219
MS.gene011983.t1 AT5G18680 37.748 302 154 15 691 980 11 290 8.15e-44 161
MS.gene011983.t1 AT3G06380 35.548 301 159 13 691 980 5 281 9.03e-42 155
MS.gene011983.t1 AT1G25280 37.918 269 125 11 745 980 1 260 1.97e-38 145
MS.gene011983.t1 AT1G25280 37.918 269 125 11 745 980 1 260 1.97e-38 145
MS.gene011983.t1 AT1G61940 48.276 87 45 0 631 717 1 87 6.36e-24 102
MS.gene011983.t1 AT1G61940 50.820 61 30 0 631 691 1 61 7.93e-15 75.9

Find 203 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAACTTGCTTCCAGTTCT+TGG 0.117882 8.2:+27837613 MS.gene011983:intron
ATTACCTGCTTCACTGAAAT+AGG 0.231730 8.2:-27839936 None:intergenic
ATAACTTTGAATCCTATAAT+AGG 0.255784 8.2:+27834627 MS.gene011983:CDS
TCTACCACCTGAATTGCTTT+TGG 0.262620 8.2:+27839770 MS.gene011983:CDS
TGAGAGCCATTAGCATATTA+TGG 0.269082 8.2:-27834517 None:intergenic
ACCTGCAGTTTGGTCTCTTT+TGG 0.282684 8.2:-27837301 None:intergenic
AGAAGTTTCAGAAGAGCTTC+TGG 0.284807 8.2:-27836609 None:intergenic
TCTAACTGGACAACCTTCTA+TGG 0.287442 8.2:+27835120 MS.gene011983:CDS
CTACATGCTGGAACTCTTCT+AGG 0.289252 8.2:-27840779 None:intergenic
AAGTATGTTGCTTGCAAGTT+TGG 0.293186 8.2:-27836244 None:intergenic
TCATGAACAATAGTTGTCTT+TGG 0.307055 8.2:-27834356 None:intergenic
ATCCGATCCAGTGCTTTATT+AGG 0.307753 8.2:+27840063 MS.gene011983:CDS
GATTGAACTGCAGCATTATC+TGG 0.330974 8.2:-27840713 None:intergenic
AGAAAGTTTACTCCCCTAAA+AGG 0.331393 8.2:+27836544 MS.gene011983:CDS
ATTATATCCAAAAGCAATTC+AGG 0.336455 8.2:-27839777 None:intergenic
TTGGTAGGAGTTTAAGGGCC+TGG 0.338402 8.2:-27837282 None:intergenic
GATAGATTTGCAGAAGCATT+AGG 0.339356 8.2:-27836967 None:intergenic
CCCTGTTGAATAGGTTCAAT+TGG 0.340120 8.2:-27839735 None:intergenic
AGCATCTAATATGTCAGAAT+TGG 0.342472 8.2:+27834460 MS.gene011983:CDS
CAATAAGACAATGCCAGTTC+TGG 0.344642 8.2:-27836887 None:intergenic
AGTTGTCTTTGGAAGGATAA+TGG 0.347247 8.2:-27834345 None:intergenic
TTTACCAACAAATTTGTTGC+TGG 0.348268 8.2:-27840537 None:intergenic
TCCAATTGAACCTATTCAAC+AGG 0.350379 8.2:+27839734 MS.gene011983:CDS
AGTGCTGGTGAACGAGAAAA+AGG 0.350410 8.2:-27840953 None:intergenic
AGAACTTGCTTCCAGTTCTT+GGG 0.352528 8.2:+27837614 MS.gene011983:intron
CCATGGTATGAATCTTTCAT+TGG 0.357531 8.2:-27840989 None:intergenic
ATTTAAGTTCTCAACAGAAA+TGG 0.358948 8.2:+27836517 MS.gene011983:CDS
ATTATCTTTGTATGTTCATA+AGG 0.359693 8.2:+27836698 MS.gene011983:CDS
TAGATGCCACCACACTAATA+TGG 0.360672 8.2:-27841129 None:intergenic
ACAAATTTGTTGGTAAAGTA+AGG 0.362569 8.2:+27840543 MS.gene011983:CDS
GTCAAATTCCCACGTTGCTC+TGG 0.365897 8.2:+27839704 MS.gene011983:CDS
ATAGAGCTTTGACTCAGTTC+TGG 0.369854 8.2:-27841028 None:intergenic
CAAGCCAGCAACAAATTTGT+TGG 0.370996 8.2:+27840533 MS.gene011983:CDS
GCCCATTGTCCCTGTTGAAT+AGG 0.371158 8.2:-27839744 None:intergenic
TCGGGAGATGGCTTCAATAT+TGG 0.372471 8.2:+27835072 MS.gene011983:CDS
TGGTAGGAGTTTAAGGGCCT+GGG 0.377499 8.2:-27837281 None:intergenic
TGGAAATATTCCAGCAGATA+TGG 0.378069 8.2:+27836195 MS.gene011983:CDS
TAATGATTTCAAGGGCTTCC+CGG 0.384115 8.2:-27835258 None:intergenic
CTCACAAGGGGCCCAAGAAC+TGG 0.388826 8.2:-27837625 None:intergenic
TTCGTCTATGTCTGATGATA+TGG 0.391077 8.2:+27834427 MS.gene011983:CDS
CCTTGAAATCATTAATAAAT+CGG 0.391429 8.2:+27835267 MS.gene011983:CDS
TCTGCCTTGGAGAGTATATC+AGG 0.391653 8.2:+27836579 MS.gene011983:CDS
ATCTTTCTGAAGTACTTGAT+TGG 0.391660 8.2:+27836487 MS.gene011983:CDS
CATTCCTGTTGTACTTAGCT+TGG 0.391909 8.2:+27840105 MS.gene011983:CDS
CCTCAATTATACCTGCAGTT+TGG 0.392706 8.2:-27837311 None:intergenic
CGGAACTTTGCAAAATGAAA+TGG 0.397522 8.2:+27836303 MS.gene011983:CDS
CTTGAATCTATGAGCAATCT+TGG 0.399812 8.2:-27835314 None:intergenic
CTCCAAGCAATGCTTCTAAC+TGG 0.402074 8.2:+27835106 MS.gene011983:CDS
CCGATTTATTAATGATTTCA+AGG 0.402489 8.2:-27835267 None:intergenic
GAGGTACTCGATGATGGCCT+CGG 0.409197 8.2:-27835338 None:intergenic
TCCCGAGCTTCTGAGCTAAC+AGG 0.415375 8.2:-27835055 None:intergenic
CTGAGACGGGTATCGAGTTC+AGG 0.416521 8.2:-27840871 None:intergenic
GAGACAGAGCGAGAACCTTC+AGG 0.417013 8.2:+27837693 MS.gene011983:CDS
GTAGCTTCATGTTCCAGAAC+TGG 0.418026 8.2:+27836874 MS.gene011983:intron
TGATCAACCGATCCAGTGTC+GGG 0.421360 8.2:+27841090 MS.gene011983:CDS
GAAGAGCGGGCAATATTGTT+AGG 0.421818 8.2:+27836651 MS.gene011983:CDS
ATCTGTCTCATAATGTTTCA+CGG 0.424549 8.2:+27841182 MS.gene011983:CDS
TTTAAGTTCTCAACAGAAAT+GGG 0.425233 8.2:+27836518 MS.gene011983:CDS
AATGAGCCATAATATGCTAA+TGG 0.426287 8.2:+27834511 MS.gene011983:CDS
GTGCTTCAGTATGTAAATCA+TGG 0.436410 8.2:+27839856 MS.gene011983:CDS
TACCTTGAGGTACTCGATGA+TGG 0.439297 8.2:-27835344 None:intergenic
GGCTCCAAGCTAAGTACAAC+AGG 0.439576 8.2:-27840109 None:intergenic
AGAGCTCAATAGTTTGGGTT+GGG 0.439936 8.2:-27836165 None:intergenic
ATGAATGAGGATGCCGTATC+CGG 0.443793 8.2:+27836283 MS.gene011983:CDS
ACCTGTTAGCTCAGAAGCTC+GGG 0.448242 8.2:+27835054 MS.gene011983:CDS
CCAGCATGTAGCCATCTTGT+TGG 0.449241 8.2:+27840791 MS.gene011983:CDS
ATTTCCTATTTCAGTGAAGC+AGG 0.455183 8.2:+27839932 MS.gene011983:CDS
ACCTATTCAACAGGGACAAT+GGG 0.456062 8.2:+27839743 MS.gene011983:CDS
TGCTAAGGATACGACAAATT+CGG 0.458151 8.2:-27840495 None:intergenic
TGTTCATGATTCAGACAAGT+TGG 0.460438 8.2:+27834370 MS.gene011983:CDS
TTCAAGGGCTTCCCGGTGCA+TGG 0.467675 8.2:-27835251 None:intergenic
AAACTTGCAAGCAACATACT+TGG 0.468926 8.2:+27836246 MS.gene011983:CDS
CGGAGCATCGTCCCCGACAC+TGG 0.469935 8.2:-27841102 None:intergenic
AGCTAAAGAGGGTAATCTTA+CGG 0.472647 8.2:+27841209 MS.gene011983:CDS
AGGATGCAGTTGATCTTTCG+TGG 0.479928 8.2:-27840851 None:intergenic
CGATTTATTAATGATTTCAA+GGG 0.480863 8.2:-27835266 None:intergenic
TATAAGTTAACCATATCTGC+TGG 0.483396 8.2:-27836205 None:intergenic
TTGAAAAGAGTGAGACATCT+TGG 0.483464 8.2:+27839808 MS.gene011983:CDS
TGTTGGCACCGTTTCCTATG+AGG 0.484236 8.2:+27840808 MS.gene011983:CDS
TGTTCATCCTAATAAAGCAC+TGG 0.484775 8.2:-27840070 None:intergenic
AAGAGCTCAATAGTTTGGGT+TGG 0.485323 8.2:-27836166 None:intergenic
CCCTCGATTTGTTAAGCCGC+AGG 0.486763 8.2:+27837239 MS.gene011983:CDS
AAGCTTAGGCCGCAAACTCA+AGG 0.491994 8.2:+27839632 MS.gene011983:CDS
TTTCACGGGCGGAGCTAAAG+AGG 0.499217 8.2:+27841197 MS.gene011983:CDS
CCCGTCTCAGCTCTTTATGA+AGG 0.499502 8.2:+27840884 MS.gene011983:CDS
GATCGGATAATCACAGGGAC+CGG 0.502784 8.2:-27840048 None:intergenic
TACCTGTTAGCTCAGAAGCT+CGG 0.504467 8.2:+27835053 MS.gene011983:CDS
GTCCAGTTAGAAGCATTGCT+TGG 0.504971 8.2:-27835108 None:intergenic
AATGACAGTGATCACCTCAT+AGG 0.505003 8.2:-27840822 None:intergenic
ATCAGACATAGACGAACCTC+TGG 0.515415 8.2:-27834420 None:intergenic
TCAAGCAGATGGCAAAGGCT+TGG 0.517708 8.2:-27841291 None:intergenic
CGCAGGTGGGATAGAATCAA+TGG 0.523416 8.2:+27837256 MS.gene011983:CDS
GCAGATGGCAAAGGCTTGGA+AGG 0.525320 8.2:-27841287 None:intergenic
GAACAATAGTTGTCTTTGGA+AGG 0.526784 8.2:-27834352 None:intergenic
TGTCGGGGACGATGCTCCGC+AGG 0.528693 8.2:+27841106 MS.gene011983:CDS
ATTGAGAAGGCCACTGCAGA+AGG 0.529063 8.2:+27834572 MS.gene011983:CDS
ATTATTGGTGTCAGAGGCAT+GGG 0.529756 8.2:+27835026 MS.gene011983:intron
AATTATTGGTGTCAGAGGCA+TGG 0.536641 8.2:+27835025 MS.gene011983:intron
ATCTATGAGCAATCTTGGAC+TGG 0.537627 8.2:-27835309 None:intergenic
ATGGCTGAAAATTTATTGAG+AGG 0.539257 8.2:+27835139 MS.gene011983:CDS
TTTCAAATCTATTATCTCCC+CGG 0.539980 8.2:+27837029 MS.gene011983:CDS
AATATTGGAGGTAACGATGT+TGG 0.541161 8.2:-27840923 None:intergenic
TCGATTTGTTAAGCCGCAGG+TGG 0.541277 8.2:+27837242 MS.gene011983:CDS
AACCTATTCAACAGGGACAA+TGG 0.542913 8.2:+27839742 MS.gene011983:CDS
AAGATAATGCTAGTTCATGT+TGG 0.543636 8.2:-27836683 None:intergenic
AGGTACTCGATGATGGCCTC+GGG 0.547983 8.2:-27835337 None:intergenic
AGCTTAGGCCGCAAACTCAA+GGG 0.550704 8.2:+27839633 MS.gene011983:CDS
AGATGCTTTATACGAAGAGC+GGG 0.554677 8.2:+27836638 MS.gene011983:CDS
CCGTCTCAGCTCTTTATGAA+GGG 0.557348 8.2:+27840885 MS.gene011983:CDS
TTAGAATTCAATATCCCGCT+TGG 0.557985 8.2:-27840746 None:intergenic
TCTATAAAGAACTTTCAACT+TGG 0.558764 8.2:+27841148 MS.gene011983:CDS
CGCAGGCCATATTAGTGTGG+TGG 0.558911 8.2:+27841123 MS.gene011983:CDS
GAGACATAGTATTATTGAGA+AGG 0.559837 8.2:+27834559 MS.gene011983:CDS
ACAAGTGCAACTCCATGCAC+CGG 0.560855 8.2:+27835239 MS.gene011983:CDS
GGATAGAATCAATGGAGCCC+AGG 0.561813 8.2:+27837264 MS.gene011983:CDS
TCTGTCTCATAATGTTTCAC+GGG 0.563535 8.2:+27841183 MS.gene011983:CDS
TTCATACCATGGAAGCCTAT+CGG 0.564608 8.2:+27841000 MS.gene011983:CDS
CCCTTCATAAAGAGCTGAGA+CGG 0.565562 8.2:-27840885 None:intergenic
GCACTGGATCGGATAATCAC+AGG 0.569532 8.2:-27840054 None:intergenic
AATCAAATTGTCGACCAAGC+GGG 0.569918 8.2:+27840732 MS.gene011983:CDS
GATCCTTTGCATCTTTCCAG+AGG 0.572094 8.2:+27834404 MS.gene011983:CDS
AGTGATCACCTCATAGGAAA+CGG 0.575348 8.2:-27840816 None:intergenic
TTGATCAACCGATCCAGTGT+CGG 0.575709 8.2:+27841089 MS.gene011983:CDS
AAGATAACAACAGCACGTGC+AGG 0.577549 8.2:-27839831 None:intergenic
TCAGTTCTGGTAGCTCCGAT+AGG 0.578337 8.2:-27841015 None:intergenic
TGACATATTAGATGCTGAAG+AGG 0.578357 8.2:-27834453 None:intergenic
GAAGAATTTACTGAGGAAGA+TGG 0.579397 8.2:+27837193 MS.gene011983:CDS
TTATATCTACTTGAGATGCT+AGG 0.580402 8.2:-27834298 None:intergenic
CCAATGAAAGATTCATACCA+TGG 0.582725 8.2:+27840989 MS.gene011983:CDS
ATCCTAATAAAGCACTGGAT+CGG 0.584659 8.2:-27840065 None:intergenic
GAAGCTTTCAAGAACAAGCA+TGG 0.585477 8.2:-27836143 None:intergenic
CCTTCATAAAGAGCTGAGAC+GGG 0.585813 8.2:-27840884 None:intergenic
GAGTACTCTAGAACAAGTGT+TGG 0.586614 8.2:-27836121 None:intergenic
CCAACAAGATGGCTACATGC+TGG 0.587008 8.2:-27840791 None:intergenic
TAGCTCAGAAGCTCGGGAGA+TGG 0.588054 8.2:+27835060 MS.gene011983:CDS
AGGAAACGGTGCCAACAAGA+TGG 0.588598 8.2:-27840802 None:intergenic
AGTACTCTAGAACAAGTGTT+GGG 0.588876 8.2:-27836120 None:intergenic
TCTCATTGACGTCAAGCAGA+TGG 0.589615 8.2:-27841302 None:intergenic
ATCGGATAATCACAGGGACC+GGG 0.590150 8.2:-27840047 None:intergenic
ACTGTCGTATATAGAGAACT+TGG 0.591158 8.2:-27840684 None:intergenic
GTAGCTCCGATAGGCTTCCA+TGG 0.591182 8.2:-27841006 None:intergenic
GTGATCCTTCCACATTGTTG+AGG 0.591561 8.2:-27839909 None:intergenic
TGCAAATCTATCTGAATCCA+CGG 0.592462 8.2:+27836978 MS.gene011983:CDS
ACCAAAAGAGACCAAACTGC+AGG 0.594448 8.2:+27837300 MS.gene011983:CDS
GTCAGAGTAGCGACAGTGGT+AGG 0.594482 8.2:+27837155 MS.gene011983:CDS
TGAGCAAGCATATGCTCTGT+CGG 0.594611 8.2:+27839682 MS.gene011983:CDS
ATATCCTGATATACTCTCCA+AGG 0.595785 8.2:-27836583 None:intergenic
AGAGATGTTTATGAGTGTCA+AGG 0.596164 8.2:-27841056 None:intergenic
GCTCGTGCTTTCTATGAATG+AGG 0.596630 8.2:+27836270 MS.gene011983:CDS
GAACCTCTGGAAAGATGCAA+AGG 0.598653 8.2:-27834407 None:intergenic
TAGTTCTTGGTCATCCTCCG+TGG 0.599717 8.2:-27836995 None:intergenic
CATCGTCCCCGACACTGGAT+CGG 0.599982 8.2:-27841097 None:intergenic
ACCTGCGGCTTAACAAATCG+AGG 0.602809 8.2:-27837240 None:intergenic
GGAGGTAACGATGTTGGAGT+CGG 0.604172 8.2:-27840917 None:intergenic
TGACGTCAAGCAGATGGCAA+AGG 0.606195 8.2:-27841296 None:intergenic
GCTAGTCAGAGTAGCGACAG+TGG 0.606198 8.2:+27837151 MS.gene011983:CDS
TCAGCAATGAAATACTTACA+TGG 0.606221 8.2:-27840130 None:intergenic
TTCCTCGGTTCCTTCTGCAG+TGG 0.609602 8.2:-27834582 None:intergenic
GACATATTAGATGCTGAAGA+GGG 0.609712 8.2:-27834452 None:intergenic
AGACTCCTCAACAATGTGGA+AGG 0.611801 8.2:+27839904 MS.gene011983:CDS
CGTCTCAGCTCTTTATGAAG+GGG 0.613180 8.2:+27840886 MS.gene011983:CDS
CATTGATTCTATCCCACCTG+CGG 0.614583 8.2:-27837255 None:intergenic
TACTTCTATCATGCTTGATG+AGG 0.616537 8.2:+27837216 MS.gene011983:CDS
GAGATGTTTATGAGTGTCAA+GGG 0.619622 8.2:-27841055 None:intergenic
GTCTCATAATGTTTCACGGG+CGG 0.621282 8.2:+27841186 MS.gene011983:CDS
CCTGCGGCTTAACAAATCGA+GGG 0.621606 8.2:-27837239 None:intergenic
CAAGTGCAACTCCATGCACC+GGG 0.621748 8.2:+27835240 MS.gene011983:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 8.2:-27841277 None:intergenic
TCTTCGTATAAAGCATCTGA+TGG 0.624286 8.2:-27836633 None:intergenic
CACTGGATCGGATAATCACA+GGG 0.628720 8.2:-27840053 None:intergenic
GTTGGGTCTGTTTCACAAAG+TGG 0.629469 8.2:-27836103 None:intergenic
GTCTCAGCTCTTTATGAAGG+GGG 0.630906 8.2:+27840887 MS.gene011983:CDS
CGATTTGTTAAGCCGCAGGT+GGG 0.635076 8.2:+27837243 MS.gene011983:CDS
AAAGGTATATCAAATATTGG+AGG 0.636262 8.2:-27840935 None:intergenic
TGTGAAGAGATACTTCAAGA+AGG 0.640562 8.2:+27835187 MS.gene011983:CDS
CTCCGCAGGCCATATTAGTG+TGG 0.641697 8.2:+27841120 MS.gene011983:CDS
AACATGTCATCGAAAAGCTT+AGG 0.643710 8.2:+27839618 MS.gene011983:CDS
TTCACGGGCGGAGCTAAAGA+GGG 0.644674 8.2:+27841198 MS.gene011983:CDS
GGCCACTGCAGAAGGAACCG+AGG 0.645070 8.2:+27834580 MS.gene011983:CDS
CAGATGCTTTATACGAAGAG+CGG 0.646985 8.2:+27836637 MS.gene011983:CDS
GCTTAGGCCGCAAACTCAAG+GGG 0.647695 8.2:+27839634 MS.gene011983:CDS
GGCCATCATCGAGTACCTCA+AGG 0.647947 8.2:+27835342 MS.gene011983:CDS
CAATCAAATTGTCGACCAAG+CGG 0.651811 8.2:+27840731 MS.gene011983:CDS
TTATCAAGAACTATGAGCCG+AGG 0.653648 8.2:+27837085 MS.gene011983:CDS
TGTATACAGAGAAAGAACAT+AGG 0.654541 8.2:-27834321 None:intergenic
TGCTCATAGATTCAAGCCCG+AGG 0.656164 8.2:+27835321 MS.gene011983:CDS
CACCACACTAATATGGCCTG+CGG 0.658776 8.2:-27841122 None:intergenic
CCAATTGAACCTATTCAACA+GGG 0.658968 8.2:+27839735 MS.gene011983:CDS
TAGGTTTAAGAAAATAAACA+AGG 0.661395 8.2:+27834646 MS.gene011983:CDS
GATCAACCGATCCAGTGTCG+GGG 0.678042 8.2:+27841091 MS.gene011983:CDS
AGTTACATCCAGAGCAACGT+GGG 0.678793 8.2:-27839712 None:intergenic
GTCAAGACTCCTCAACAATG+TGG 0.680111 8.2:+27839900 MS.gene011983:CDS
TTTCGAATGGATTTACTCCG+GGG 0.681326 8.2:-27837046 None:intergenic
TGCTGCAATAGAGATTGCAG+AGG 0.695701 8.2:+27837120 MS.gene011983:CDS
ATATCCAAAAGCAATTCAGG+TGG 0.697831 8.2:-27839774 None:intergenic
AGTCTTGACGATCTCTAACG+TGG 0.698293 8.2:-27839886 None:intergenic
ATTATGAGACAGATGAACAG+AGG 0.698328 8.2:-27841173 None:intergenic
TGAACTGCAGCATTATCTGG+TGG 0.700796 8.2:-27840710 None:intergenic
GAGTTACATCCAGAGCAACG+TGG 0.703782 8.2:-27839713 None:intergenic
CTTCAGTATGTAAATCATGG+AGG 0.710846 8.2:+27839859 MS.gene011983:CDS
CTTGACGATCTCTAACGTGG+CGG 0.741325 8.2:-27839883 None:intergenic
TGACACAGAAGAATTTACTG+AGG 0.759370 8.2:+27837186 MS.gene011983:CDS
AAATCTATCTGAATCCACGG+AGG 0.774213 8.2:+27836981 MS.gene011983:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr8.2 gene 27834287 27841339 27834287 ID=MS.gene011983
chr8.2 mRNA 27834287 27841339 27834287 ID=MS.gene011983.t1;Parent=MS.gene011983
chr8.2 exon 27834287 27834667 27834287 ID=MS.gene011983.t1.exon1;Parent=MS.gene011983.t1
chr8.2 CDS 27834287 27834667 27834287 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27835040 27835363 27835040 ID=MS.gene011983.t1.exon2;Parent=MS.gene011983.t1
chr8.2 CDS 27835040 27835363 27835040 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27836103 27836324 27836103 ID=MS.gene011983.t1.exon3;Parent=MS.gene011983.t1
chr8.2 CDS 27836103 27836324 27836103 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27836477 27836719 27836477 ID=MS.gene011983.t1.exon4;Parent=MS.gene011983.t1
chr8.2 CDS 27836477 27836719 27836477 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27836878 27837321 27836878 ID=MS.gene011983.t1.exon5;Parent=MS.gene011983.t1
chr8.2 CDS 27836878 27837321 27836878 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27837616 27837714 27837616 ID=MS.gene011983.t1.exon6;Parent=MS.gene011983.t1
chr8.2 CDS 27837616 27837714 27837616 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27839594 27839953 27839594 ID=MS.gene011983.t1.exon7;Parent=MS.gene011983.t1
chr8.2 CDS 27839594 27839953 27839594 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27840047 27840137 27840047 ID=MS.gene011983.t1.exon8;Parent=MS.gene011983.t1
chr8.2 CDS 27840047 27840137 27840047 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27840444 27840564 27840444 ID=MS.gene011983.t1.exon9;Parent=MS.gene011983.t1
chr8.2 CDS 27840444 27840564 27840444 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
chr8.2 exon 27840667 27841339 27840667 ID=MS.gene011983.t1.exon10;Parent=MS.gene011983.t1
chr8.2 CDS 27840667 27841339 27840667 ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1
Gene Sequence

>MS.gene011983

ATGGAACATTTCCTAGCATCTCAAGTAGATATAACCTATGTTCTTTCTCTGTATACATCCATTATCCTTCCAAAGACAACTATTGTTCATGATTCAGACAAGTTGGACATTTTTGGGGATCCTTTGCATCTTTCCAGAGGTTCGTCTATGTCTGATGATATGGAGCCCTCTTCAGCATCTAATATGTCAGAATTGGATGACAATGCAGAACTTGAATCGAAAAAAATGAGCCATAATATGCTAATGGCTCTCATAAAATTTTTGCACAAGAAGAGACATAGTATTATTGAGAAGGCCACTGCAGAAGGAACCGAGGAAGTAGTTTTTGATGCAGTTGGTAATAACTTTGAATCCTATAATAGGTTTAAGAAAATAAACAAGGTAAATACTGAGTTTTTTTTTGTTCCTTTTCCATGTATCACGTGTGGTGCTTGTACAATTAATGTTTCTATTTATCTTCAATATGCAACGACAAATGCTTTTGGGGTAGACTTGCTAGAATTTACAACTCGTGCATATATTTGGAGGTCAAAGAGGGAAGTATCGTACTTGTATAGTACTTTGTTGACAAAAAGTAATATACATATTGAAGTAGTGTAAATTTCTTTAAACAATGTATGCAAGATTAATGCTGAAGCTGTGGGACATTAGATGTCCTTAATCCTTTTTGTAACGTTAAAGCTATGCAATACTAGTATTGGTTTTGATCACAATTGATATTGAAGTTACCACTCGGAAAATTATTGGTGTCAGAGGCATGGGAGTATACCTGTTAGCTCAGAAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCAATGCTTCTAACTGGACAACCTTCTATGGCTGAAAATTTATTGAGAGGTCTTAACTACTGTGATCTGAAAATATGTGAAGAGATACTTCAAGAAGGAAGTTATCATGTTGCTTTAGTAGAACTTTACAAGTGCAACTCCATGCACCGGGAAGCCCTTGAAATCATTAATAAATCGGTGAAAGAGTCAGAGTCTAGCCAGTCCAAGATTGCTCATAGATTCAAGCCCGAGGCCATCATCGAGTACCTCAAGGTAAATTTGGTCAATAGTTTTGCTGATAAACATTTTGCTTCTATGTGTTTGAACAGCTGTCATGCCTATATGTTTTCTTCCTCAATAAAATGATTGATTTAACATAGTGCGACGAAGCAACAAAGTCTGGATATATGACATTATATAATCTGTGATCAGATAATAAGGGCGCTGTTACTTTTGGTGTATTTATCATGGCTTAAACGAAGGAATGATTTTTAATTGGGTCATGTTAACTTGTGCCCTAAGGGCACAAGTTAAGAATCTAAAAAAAGAATTAAAGCATAAATTTTGTATTGAAAAAATAAGTTTTTAACTTTTCAAGACATTGAATGCACAATTTCCAAAAATAAGTTTCTACATTTGGCTATTAAACTTGTGGCTTAAGGGCACAAGTTAGCATTTCCCTTTTTAATTTTATTTAGTAGTGTCCATCAGATGGAATTTCGCTATCAAACATCATTTTTTCTTTAGCCGTAATGTGGGGACAATGGACAACAGTGAGCTGTTTTAATTTTATTGGATAATTTAGTCCTTTTTTCTTCTGCCATATAGCTGGATGGGAAAATATTTGCAGTCACTTAGCGGATTAGTTAAAAATATGTATTCAATTTCTGTCACGCATGAATTGAAGTTCTCGCAAGAATCCAAACCTCTTTAAAGGTGTTATTATTTCCATTATGCATTGCTTATTGTTAATTGATGCTATTTTTCCTGATTTGGTCGGTTTCTGATGCAGCCACTTTGTGAAACAGACCCAACACTTGTTCTAGAGTACTCCATGCTTGTTCTTGAAAGCTTCCCAACCCAAACTATTGAGCTCTTTTTGTCTGGAAATATTCCAGCAGATATGGTTAACTTATATTTGAAGCAACATGCTCCAAACTTGCAAGCAACATACTTGGAGCTCGTGCTTTCTATGAATGAGGATGCCGTATCCGGAACTTTGCAAAATGAAATGGTGAGGTCCTTTGGCATCTGATTCAATGACTCTAAGGACCAACACAGTTCTATTTTTCTTTTTCAAAAGCATTTATCTCTGGTATTTTCATGGTTGATTTGATTAATAATAGGAGAAAAATCTCTATTTACTTGCTGCACTCTGCAATGCAGGTACATATCTATCTTTCTGAAGTACTTGATTGGCACGCTGATTTAAGTTCTCAACAGAAATGGGACGAGAAAGTTTACTCCCCTAAAAGGAAAAAATTACTGTCTGCCTTGGAGAGTATATCAGGATATAATCCAGAAGCTCTTCTGAAACTTCTTCCATCAGATGCTTTATACGAAGAGCGGGCAATATTGTTAGGAAAAATGAACCAACATGAACTAGCATTATCTTTGTATGTTCATAAGGTATATCAAGTAAATACCATCCTGTCTTTAGTGTGTAAACAACAATTATAGGGTTTAATACATTTTGAGTTTAATTGCTTCATCAACATGTATTTTACATAAATATTAGTTTTGTTGTGAATATAATGGGAATAAGTGAACTCCCTTTTCATTTGTAGCTTCATGTTCCAGAACTGGCATTGTCTTATTGTGATCATGTGTATGAATCTGCCCATAAGTCTTCTGTAAAATCTCTCAGCAATATATACCTAATGCTTCTGCAAATCTATCTGAATCCACGGAGGATGACCAAGAACTACGAAAAGAAAATTTCAAATCTATTATCTCCCCGGAGTAAATCCATTCGAAAAGTTACTTCAAAATCATTATCAAGAACTATGAGCCGAGGATCAAAGAAAATTGCTGCAATAGAGATTGCAGAGGACGCAAAAGCTAGTCAGAGTAGCGACAGTGGTAGGAGTGATGCTGACACAGAAGAATTTACTGAGGAAGATGGTACTTCTATCATGCTTGATGAGGCCCTCGATTTGTTAAGCCGCAGGTGGGATAGAATCAATGGAGCCCAGGCCCTTAAACTCCTACCAAAAGAGACCAAACTGCAGGTATAATTGAGGAAATGAGGTGATGGAATTCTCTTTATTTCATCAAACATAACGTCAATGCATAACTATATTAGCTTTGGCTTATTGAAGAGAACATGGTTTATGACTTCATGGTAATTTTTCCAATTTTGGTGTTGGTTCGTAGCTATATAACAAGCAACATTTTTTTTATCGGTCCAACTTATTCTCCTGGTGGAGTTTGTGCTGTTAGCTGAATTTTTTTAATATATTTTATTAGACATTATTTGTTTCTTTATTTCTTCGATTTAGTAAACAATTGGATGTTTTCTGCAGAACTTGCTTCCAGTTCTTGGGCCCCTTGTGAGAAAATCTAGTGAAATGTATCGTAATTGTTCAGTTGTCAGAAGCTTGAGACAGAGCGAGAACCTTCAGGTAAACATACATCAGCAATCAAGATTTTTATTTAAGATTGTTAGAAGAAAATGGTAGGATTGGCCTTTAGGGATATAATGAAATATCTTAACTGACAACTTCTCAGTTGGGTTTTATCGAAATCATCATTAAGATCTGAATTCTCGTCTAATTTTGCACATTCAAATGCTTCTGTTTTGTTACAATGCGGGTACATATCTATAACGACACAATTTTCTTTTCACAGGTGAAAGATGAACTATACAATAAGAGGAAAGCAGTTATACAGATTAGCGATGATAACATGTGTTCCTTGTGCCATAAGAAAATATGGACTAGTGTTTTTGCAGTTTATCCGAATGGGAAAACTCTAGTGCATTTTGTGTGTTTCAGAGATTCTCAAAGTATGAAAGCTGTGGCCAAAGTGTCTCCACTGAAAAAGGCATTTTGAAAATGGGTATCAATTTTTTTTGGTGAAATTGGAACTGTAATCTAATCTTAGAAGATCAGATTGTACTAGTTTGTAGGCATGGTATCATTCTGAAGGGAGGGGGGGGGGGGGGGGGGGGGGGGGAGGTGATATGTATCTCTTTCATTTTCTTTTAACTAAGGTAAATATTGGTTTGACTTTTGGGTTAAATCTAAGCATTGAAAGGGAGCATGTATTTATCTATCCTTTCACCCAGTGTTCTTCAAAAATAAAATAAGTATTTTTATTAACATTTTTTTTTTGAAAGAATAATTATTTTAACAATTAAAATCAATTTAATGTGTGTGGATCGTGGATACAAATGGTCAAAAATAAAATAAGTATTTTTATTAACATTTTTTTTGAAAGAATAATTATTTTAACAATTAAAATCAATTTAATGTGTGTGGATCGTTGATACAAATGGTCAAAAATAAAATAAGTATTTTTATTAACATTTTTTTTTGAAAGAATAATTATTTTAACAATTAAAATCAATTTAATGTGTGTGGATCGTTGATACAAATGGGCCCTGCAAATAGGTCCAGGACTGTTCCAAAGTACACTGCACATTCAGTTAGTTACTAATATGATCCTAATATTAAGGAAGAAATATTCGATGCTAAATGTTAGGAAGCAGGTGAAATTCTGTTCCTATTTGTGCTATTCAATCACCAAAAAGAAAACTAGTCTTCCCCGAGATCCCTTCCTTACTATAGTTAGGAAATAATCAGAACTGCCAGTTAATCACAAATCATTCCATTTGTTGCTTTTACTATCACAAGTTAGTTTTTCTATTCTATTTCTTTCAATATTGTGAGTGTTTGTATTTATTTATTTTTTGAAAGAATTGTGAGTGTATATCAGTCTTAGATTGCAAAATGTGATACCATTTCTTAAGGATGTCAAATTAATCACAACATGTATTGTTTCAGTGCAGCATTTAAGTTTTTTAGATATTACTCCGACGACCATAATTATAAACCTTGATAATATTGATAAGTTATTATTATTATTATGAAGATTTGTTTTTGAAGGTATTATTATTATGAAGATGAGTATATGACAAAATGGTAGTTAAATTTTAGGGCATTTGGCTTAAGTAAGAAAATCAAAGAAAGGTTGATATAGCAATACACTCATGGTTAGTTATACATACATATGTAATAGTAACCATTGCTGAATAATTTAATCAATTAATTACTCACTTTACAGTCCAAAATCTATAATCACACTTAGAGGAGTCAATCCAATTTTGTTTCCAATTGTTGACTTGACGCTAGATAATTTTGTTTGCGATGTTTTCTATTGCCTTCAGTCTAGAATGTTATGAGTAACTAAATGGTTATATTTGTCTGGTTATCACGAGTCTTTGCCTTTGTATTTTTGTTAATGTCAGAAATTTAGAAGCTTGCATCTGGATTGGTGCAGTTTTATGTTGCAACGGAGTGTGGAAACATGTCATCGAAAAGCTTAGGCCGCAAACTCAAGGGGATAAAAAATGGAATAGGTAGCATATTGAGCAAGCATATGCTCTGTCGGTCAAATTCCCACGTTGCTCTGGATGTAACTCCAATTGAACCTATTCAACAGGGACAATGGGCAAGTCTACCACCTGAATTGCTTTTGGATATAATCCGAAGGGTTGAAAAGAGTGAGACATCTTGGCCTGCACGTGCTGTTGTTATCTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCGCCACGTTAGAGATCGTCAAGACTCCTCAACAATGTGGAAGGATCACATTTCCTATTTCAGTGAAGCAGGTAATCAATTATTTCACCCACTTTCTGGTCTAATCCGAATTATTCTTTTCCCTCATGTTTTTTATGTTCTCTTTCCTTTATGTGTATGGATAGCCCGGTCCCTGTGATTATCCGATCCAGTGCTTTATTAGGATGAACAAAAGAACGTCTACATTCCTGTTGTACTTAGCTTGGAGCCATGTAAGTATTTCATTGCTGAAACATTCCATCTCTTTTTCTAAGACAATGAATATCAATTTTCAAATTTTTCATCTTAGTTACTCTTCAAGCTTGCATTCATGACTACTAATGTTGAATTTCAACTTACTTGCTCTAAATTTATGGGTTTCTTTTATTTTATTATTTATTCATTCATTGTCATTATGATTGTGGTTCATTGTCAGCATCGTTTTTTGACACAAATTGTCAGCATCGTTAATTTTTCTTTTTTTGCATTTTATGATGTATGTATTTAAGCCAGATTGTTTTTGTTTTGGTTGTAATTGTATAGCGAATAATGAGAGTAATAAGTTGTTATTAGCTGCCAAAAAGATAAGAAGGTCCGAATTTGTCGTATCCTTAGCAGCAGACGATTTTTCTCAAGCCAGCAACAAATTTGTTGGTAAAGTAAGGCAAGTTTTAGTCAATAGAAACATTTATTTACCCTTTTATTCTATTGGATTTTCATCCTACCCCTTATAGTCTTCACAACTTGATTTTTATACATATGCCAGGTCCAATTTTTGGTGCACCAAGTTCTCTATATACGACAGTCAACCACCAGATAATGCTGCAGTTCAATCAAATTGTCGACCAAGCGGGATATTGAATTCTAAGCAAGTGTCACCTAGAAGAGTTCCAGCATGTAGCCATCTTGTTGGCACCGTTTCCTATGAGGTGATCACTGTCATTGATACACCACGAAAGATCAACTGCATCCTGAACTCGATACCCGTCTCAGCTCTTTATGAAGGGGGAAACACTCCGACTCCAACATCGTTACCTCCAATATTTGATATACCTTTTTCTCGTTCACCAGCACTTAAAGAAAAAAGTCCAATGAAAGATTCATACCATGGAAGCCTATCGGAGCTACCAGAACTGAGTCAAAGCTCTATCGAGCCCTTGACACTCATAAACATCTCTCGCTCATATTTTGATCAACCGATCCAGTGTCGGGGACGATGCTCCGCAGGCCATATTAGTGTGGTGGCATCTATAAAGAACTTTCAACTTGGAGCCTCTGTTCATCTGTCTCATAATGTTTCACGGGCGGAGCTAAAGAGGGTAATCTTACGGTTTGCAAAGATTGAAAAAGATCTATTCATCATGGACTACTCTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACGTCAATGAGAGCAATACATTTATGA

Protein sequence

>MS.gene011983.t1

MEHFLASQVDITYVLSLYTSIILPKTTIVHDSDKLDIFGDPLHLSRGSSMSDDMEPSSASNMSELDDNAELESKKMSHNMLMALIKFLHKKRHSIIEKATAEGTEEVVFDAVGNNFESYNRFKKINKRHGSIPVSSEAREMASILDTALLQAMLLTGQPSMAENLLRGLNYCDLKICEEILQEGSYHVALVELYKCNSMHREALEIINKSVKESESSQSKIAHRFKPEAIIEYLKPLCETDPTLVLEYSMLVLESFPTQTIELFLSGNIPADMVNLYLKQHAPNLQATYLELVLSMNEDAVSGTLQNEMVHIYLSEVLDWHADLSSQQKWDEKVYSPKRKKLLSALESISGYNPEALLKLLPSDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDHVYESAHKSSVKSLSNIYLMLLQIYLNPRRMTKNYEKKISNLLSPRSKSIRKVTSKSLSRTMSRGSKKIAAIEIAEDAKASQSSDSGRSDADTEEFTEEDGTSIMLDEALDLLSRRWDRINGAQALKLLPKETKLQNLLPVLGPLVRKSSEMYRNCSVVRSLRQSENLQFYVATECGNMSSKSLGRKLKGIKNGIGSILSKHMLCRSNSHVALDVTPIEPIQQGQWASLPPELLLDIIRRVEKSETSWPARAVVIFCASVCKSWRSATLEIVKTPQQCGRITFPISVKQPGPCDYPIQCFIRMNKRTSTFLLYLAWSHVTNNESNKLLLAAKKIRRSEFVVSLAADDFSQASNKFVGKVRSNFWCTKFSIYDSQPPDNAAVQSNCRPSGILNSKQVSPRRVPACSHLVGTVSYEVITVIDTPRKINCILNSIPVSALYEGGNTPTPTSLPPIFDIPFSRSPALKEKSPMKDSYHGSLSELPELSQSSIEPLTLINISRSYFDQPIQCRGRCSAGHISVVASIKNFQLGASVHLSHNVSRAELKRVILRFAKIEKDLFIMDYSYPLSAFQAFAICLTSMRAIHL