Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011983.t1 | RHN42118.1 | 97.4 | 573 | 13 | 1 | 1 | 571 | 391 | 963 | 2.50E-302 | 1048.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011983.t1 | Q8L5Y0 | 60.6 | 632 | 225 | 8 | 1 | 622 | 354 | 971 | 8.5e-190 | 665.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011983.t1 | G7LES7 | 97.4 | 573 | 13 | 1 | 1 | 571 | 353 | 925 | 1.8e-302 | 1048.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011983.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011983.t1 | MTR_8g077680 | 97.382 | 573 | 13 | 1 | 1 | 571 | 353 | 925 | 0.0 | 1120 |
| MS.gene011983.t1 | MTR_5g020140 | 71.853 | 572 | 154 | 2 | 1 | 571 | 118 | 683 | 0.0 | 795 |
| MS.gene011983.t1 | MTR_8g077675 | 92.593 | 405 | 25 | 2 | 581 | 985 | 1 | 400 | 0.0 | 770 |
| MS.gene011983.t1 | MTR_8g077195 | 69.927 | 409 | 110 | 7 | 581 | 980 | 1 | 405 | 0.0 | 556 |
| MS.gene011983.t1 | MTR_5g020140 | 55.594 | 572 | 166 | 7 | 1 | 571 | 349 | 833 | 9.99e-178 | 540 |
| MS.gene011983.t1 | MTR_8g077620 | 63.438 | 413 | 115 | 10 | 581 | 982 | 1 | 388 | 3.84e-161 | 479 |
| MS.gene011983.t1 | MTR_5g020580 | 57.005 | 414 | 159 | 10 | 581 | 980 | 1 | 409 | 1.98e-146 | 442 |
| MS.gene011983.t1 | MTR_1g022370 | 45.561 | 428 | 192 | 11 | 581 | 980 | 1 | 415 | 4.84e-105 | 334 |
| MS.gene011983.t1 | MTR_8g077650 | 51.938 | 387 | 106 | 13 | 612 | 979 | 3 | 328 | 1.88e-104 | 329 |
| MS.gene011983.t1 | MTR_1g098790 | 41.435 | 432 | 201 | 13 | 579 | 980 | 15 | 424 | 3.86e-84 | 278 |
| MS.gene011983.t1 | MTR_2g007930 | 40.618 | 453 | 201 | 16 | 559 | 980 | 5 | 420 | 9.28e-84 | 277 |
| MS.gene011983.t1 | MTR_2g020280 | 42.703 | 370 | 183 | 12 | 623 | 980 | 34 | 386 | 7.25e-83 | 273 |
| MS.gene011983.t1 | MTR_8g077640 | 63.203 | 231 | 59 | 4 | 571 | 778 | 33 | 260 | 3.74e-75 | 252 |
| MS.gene011983.t1 | MTR_8g077640 | 49.219 | 128 | 58 | 4 | 853 | 977 | 260 | 383 | 1.18e-22 | 101 |
| MS.gene011983.t1 | MTR_1g088960 | 39.243 | 423 | 206 | 17 | 581 | 980 | 1 | 395 | 5.11e-75 | 253 |
| MS.gene011983.t1 | MTR_2g076200 | 41.737 | 357 | 170 | 9 | 628 | 980 | 42 | 364 | 7.16e-72 | 243 |
| MS.gene011983.t1 | MTR_2g076210 | 37.366 | 372 | 190 | 11 | 616 | 980 | 25 | 360 | 1.23e-59 | 209 |
| MS.gene011983.t1 | MTR_2g020280 | 40.199 | 301 | 151 | 12 | 692 | 980 | 4 | 287 | 2.60e-55 | 194 |
| MS.gene011983.t1 | MTR_1g023800 | 51.748 | 143 | 61 | 3 | 581 | 717 | 1 | 141 | 1.48e-38 | 141 |
| MS.gene011983.t1 | MTR_8g072800 | 61.404 | 57 | 22 | 0 | 179 | 235 | 34 | 90 | 6.23e-16 | 75.9 |
| MS.gene011983.t1 | MTR_0210s0010 | 41.837 | 98 | 52 | 3 | 672 | 769 | 10 | 102 | 3.90e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011983.t1 | AT4G36630 | 60.285 | 632 | 227 | 8 | 1 | 622 | 354 | 971 | 0.0 | 706 |
| MS.gene011983.t1 | AT4G36630 | 63.869 | 548 | 188 | 7 | 1 | 538 | 354 | 901 | 0.0 | 657 |
| MS.gene011983.t1 | AT2G18280 | 47.059 | 408 | 186 | 15 | 581 | 980 | 1 | 386 | 1.05e-101 | 324 |
| MS.gene011983.t1 | AT2G18280 | 47.059 | 408 | 186 | 15 | 581 | 980 | 1 | 386 | 1.05e-101 | 324 |
| MS.gene011983.t1 | AT1G47270 | 45.135 | 370 | 168 | 12 | 621 | 980 | 37 | 381 | 8.97e-88 | 286 |
| MS.gene011983.t1 | AT1G47270 | 45.135 | 370 | 168 | 12 | 621 | 980 | 61 | 405 | 9.83e-88 | 287 |
| MS.gene011983.t1 | AT1G47270 | 45.135 | 370 | 168 | 12 | 621 | 980 | 62 | 406 | 1.00e-87 | 287 |
| MS.gene011983.t1 | AT1G25280 | 42.132 | 394 | 183 | 12 | 623 | 980 | 54 | 438 | 6.39e-83 | 276 |
| MS.gene011983.t1 | AT2G47900 | 39.320 | 412 | 225 | 12 | 581 | 980 | 1 | 399 | 1.26e-81 | 271 |
| MS.gene011983.t1 | AT2G47900 | 39.320 | 412 | 225 | 12 | 581 | 980 | 1 | 399 | 1.26e-81 | 271 |
| MS.gene011983.t1 | AT1G76900 | 39.662 | 474 | 204 | 18 | 559 | 980 | 5 | 448 | 1.32e-81 | 272 |
| MS.gene011983.t1 | AT1G76900 | 39.662 | 474 | 204 | 18 | 559 | 980 | 5 | 448 | 1.32e-81 | 272 |
| MS.gene011983.t1 | AT1G76900 | 39.662 | 474 | 204 | 18 | 559 | 980 | 5 | 448 | 1.32e-81 | 272 |
| MS.gene011983.t1 | AT2G47900 | 39.225 | 413 | 225 | 13 | 581 | 980 | 1 | 400 | 5.75e-80 | 266 |
| MS.gene011983.t1 | AT1G43640 | 38.693 | 398 | 210 | 11 | 608 | 980 | 34 | 422 | 6.67e-74 | 250 |
| MS.gene011983.t1 | AT1G53320 | 40.000 | 360 | 178 | 8 | 628 | 980 | 44 | 372 | 7.65e-68 | 232 |
| MS.gene011983.t1 | AT1G43640 | 38.630 | 365 | 191 | 10 | 640 | 980 | 1 | 356 | 2.33e-67 | 230 |
| MS.gene011983.t1 | AT5G18680 | 38.649 | 370 | 192 | 16 | 624 | 980 | 35 | 382 | 1.49e-63 | 220 |
| MS.gene011983.t1 | AT3G06380 | 38.082 | 365 | 190 | 14 | 628 | 980 | 33 | 373 | 4.15e-63 | 219 |
| MS.gene011983.t1 | AT5G18680 | 37.748 | 302 | 154 | 15 | 691 | 980 | 11 | 290 | 8.15e-44 | 161 |
| MS.gene011983.t1 | AT3G06380 | 35.548 | 301 | 159 | 13 | 691 | 980 | 5 | 281 | 9.03e-42 | 155 |
| MS.gene011983.t1 | AT1G25280 | 37.918 | 269 | 125 | 11 | 745 | 980 | 1 | 260 | 1.97e-38 | 145 |
| MS.gene011983.t1 | AT1G25280 | 37.918 | 269 | 125 | 11 | 745 | 980 | 1 | 260 | 1.97e-38 | 145 |
| MS.gene011983.t1 | AT1G61940 | 48.276 | 87 | 45 | 0 | 631 | 717 | 1 | 87 | 6.36e-24 | 102 |
| MS.gene011983.t1 | AT1G61940 | 50.820 | 61 | 30 | 0 | 631 | 691 | 1 | 61 | 7.93e-15 | 75.9 |
Find 203 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACTTGCTTCCAGTTCT+TGG | 0.117882 | 8.2:+27837613 | MS.gene011983:intron |
| ATTACCTGCTTCACTGAAAT+AGG | 0.231730 | 8.2:-27839936 | None:intergenic |
| ATAACTTTGAATCCTATAAT+AGG | 0.255784 | 8.2:+27834627 | MS.gene011983:CDS |
| TCTACCACCTGAATTGCTTT+TGG | 0.262620 | 8.2:+27839770 | MS.gene011983:CDS |
| TGAGAGCCATTAGCATATTA+TGG | 0.269082 | 8.2:-27834517 | None:intergenic |
| ACCTGCAGTTTGGTCTCTTT+TGG | 0.282684 | 8.2:-27837301 | None:intergenic |
| AGAAGTTTCAGAAGAGCTTC+TGG | 0.284807 | 8.2:-27836609 | None:intergenic |
| TCTAACTGGACAACCTTCTA+TGG | 0.287442 | 8.2:+27835120 | MS.gene011983:CDS |
| CTACATGCTGGAACTCTTCT+AGG | 0.289252 | 8.2:-27840779 | None:intergenic |
| AAGTATGTTGCTTGCAAGTT+TGG | 0.293186 | 8.2:-27836244 | None:intergenic |
| TCATGAACAATAGTTGTCTT+TGG | 0.307055 | 8.2:-27834356 | None:intergenic |
| ATCCGATCCAGTGCTTTATT+AGG | 0.307753 | 8.2:+27840063 | MS.gene011983:CDS |
| GATTGAACTGCAGCATTATC+TGG | 0.330974 | 8.2:-27840713 | None:intergenic |
| AGAAAGTTTACTCCCCTAAA+AGG | 0.331393 | 8.2:+27836544 | MS.gene011983:CDS |
| ATTATATCCAAAAGCAATTC+AGG | 0.336455 | 8.2:-27839777 | None:intergenic |
| TTGGTAGGAGTTTAAGGGCC+TGG | 0.338402 | 8.2:-27837282 | None:intergenic |
| GATAGATTTGCAGAAGCATT+AGG | 0.339356 | 8.2:-27836967 | None:intergenic |
| CCCTGTTGAATAGGTTCAAT+TGG | 0.340120 | 8.2:-27839735 | None:intergenic |
| AGCATCTAATATGTCAGAAT+TGG | 0.342472 | 8.2:+27834460 | MS.gene011983:CDS |
| CAATAAGACAATGCCAGTTC+TGG | 0.344642 | 8.2:-27836887 | None:intergenic |
| AGTTGTCTTTGGAAGGATAA+TGG | 0.347247 | 8.2:-27834345 | None:intergenic |
| TTTACCAACAAATTTGTTGC+TGG | 0.348268 | 8.2:-27840537 | None:intergenic |
| TCCAATTGAACCTATTCAAC+AGG | 0.350379 | 8.2:+27839734 | MS.gene011983:CDS |
| AGTGCTGGTGAACGAGAAAA+AGG | 0.350410 | 8.2:-27840953 | None:intergenic |
| AGAACTTGCTTCCAGTTCTT+GGG | 0.352528 | 8.2:+27837614 | MS.gene011983:intron |
| CCATGGTATGAATCTTTCAT+TGG | 0.357531 | 8.2:-27840989 | None:intergenic |
| ATTTAAGTTCTCAACAGAAA+TGG | 0.358948 | 8.2:+27836517 | MS.gene011983:CDS |
| ATTATCTTTGTATGTTCATA+AGG | 0.359693 | 8.2:+27836698 | MS.gene011983:CDS |
| TAGATGCCACCACACTAATA+TGG | 0.360672 | 8.2:-27841129 | None:intergenic |
| ACAAATTTGTTGGTAAAGTA+AGG | 0.362569 | 8.2:+27840543 | MS.gene011983:CDS |
| GTCAAATTCCCACGTTGCTC+TGG | 0.365897 | 8.2:+27839704 | MS.gene011983:CDS |
| ATAGAGCTTTGACTCAGTTC+TGG | 0.369854 | 8.2:-27841028 | None:intergenic |
| CAAGCCAGCAACAAATTTGT+TGG | 0.370996 | 8.2:+27840533 | MS.gene011983:CDS |
| GCCCATTGTCCCTGTTGAAT+AGG | 0.371158 | 8.2:-27839744 | None:intergenic |
| TCGGGAGATGGCTTCAATAT+TGG | 0.372471 | 8.2:+27835072 | MS.gene011983:CDS |
| TGGTAGGAGTTTAAGGGCCT+GGG | 0.377499 | 8.2:-27837281 | None:intergenic |
| TGGAAATATTCCAGCAGATA+TGG | 0.378069 | 8.2:+27836195 | MS.gene011983:CDS |
| TAATGATTTCAAGGGCTTCC+CGG | 0.384115 | 8.2:-27835258 | None:intergenic |
| CTCACAAGGGGCCCAAGAAC+TGG | 0.388826 | 8.2:-27837625 | None:intergenic |
| TTCGTCTATGTCTGATGATA+TGG | 0.391077 | 8.2:+27834427 | MS.gene011983:CDS |
| CCTTGAAATCATTAATAAAT+CGG | 0.391429 | 8.2:+27835267 | MS.gene011983:CDS |
| TCTGCCTTGGAGAGTATATC+AGG | 0.391653 | 8.2:+27836579 | MS.gene011983:CDS |
| ATCTTTCTGAAGTACTTGAT+TGG | 0.391660 | 8.2:+27836487 | MS.gene011983:CDS |
| CATTCCTGTTGTACTTAGCT+TGG | 0.391909 | 8.2:+27840105 | MS.gene011983:CDS |
| CCTCAATTATACCTGCAGTT+TGG | 0.392706 | 8.2:-27837311 | None:intergenic |
| CGGAACTTTGCAAAATGAAA+TGG | 0.397522 | 8.2:+27836303 | MS.gene011983:CDS |
| CTTGAATCTATGAGCAATCT+TGG | 0.399812 | 8.2:-27835314 | None:intergenic |
| CTCCAAGCAATGCTTCTAAC+TGG | 0.402074 | 8.2:+27835106 | MS.gene011983:CDS |
| CCGATTTATTAATGATTTCA+AGG | 0.402489 | 8.2:-27835267 | None:intergenic |
| GAGGTACTCGATGATGGCCT+CGG | 0.409197 | 8.2:-27835338 | None:intergenic |
| TCCCGAGCTTCTGAGCTAAC+AGG | 0.415375 | 8.2:-27835055 | None:intergenic |
| CTGAGACGGGTATCGAGTTC+AGG | 0.416521 | 8.2:-27840871 | None:intergenic |
| GAGACAGAGCGAGAACCTTC+AGG | 0.417013 | 8.2:+27837693 | MS.gene011983:CDS |
| GTAGCTTCATGTTCCAGAAC+TGG | 0.418026 | 8.2:+27836874 | MS.gene011983:intron |
| TGATCAACCGATCCAGTGTC+GGG | 0.421360 | 8.2:+27841090 | MS.gene011983:CDS |
| GAAGAGCGGGCAATATTGTT+AGG | 0.421818 | 8.2:+27836651 | MS.gene011983:CDS |
| ATCTGTCTCATAATGTTTCA+CGG | 0.424549 | 8.2:+27841182 | MS.gene011983:CDS |
| TTTAAGTTCTCAACAGAAAT+GGG | 0.425233 | 8.2:+27836518 | MS.gene011983:CDS |
| AATGAGCCATAATATGCTAA+TGG | 0.426287 | 8.2:+27834511 | MS.gene011983:CDS |
| GTGCTTCAGTATGTAAATCA+TGG | 0.436410 | 8.2:+27839856 | MS.gene011983:CDS |
| TACCTTGAGGTACTCGATGA+TGG | 0.439297 | 8.2:-27835344 | None:intergenic |
| GGCTCCAAGCTAAGTACAAC+AGG | 0.439576 | 8.2:-27840109 | None:intergenic |
| AGAGCTCAATAGTTTGGGTT+GGG | 0.439936 | 8.2:-27836165 | None:intergenic |
| ATGAATGAGGATGCCGTATC+CGG | 0.443793 | 8.2:+27836283 | MS.gene011983:CDS |
| ACCTGTTAGCTCAGAAGCTC+GGG | 0.448242 | 8.2:+27835054 | MS.gene011983:CDS |
| CCAGCATGTAGCCATCTTGT+TGG | 0.449241 | 8.2:+27840791 | MS.gene011983:CDS |
| ATTTCCTATTTCAGTGAAGC+AGG | 0.455183 | 8.2:+27839932 | MS.gene011983:CDS |
| ACCTATTCAACAGGGACAAT+GGG | 0.456062 | 8.2:+27839743 | MS.gene011983:CDS |
| TGCTAAGGATACGACAAATT+CGG | 0.458151 | 8.2:-27840495 | None:intergenic |
| TGTTCATGATTCAGACAAGT+TGG | 0.460438 | 8.2:+27834370 | MS.gene011983:CDS |
| TTCAAGGGCTTCCCGGTGCA+TGG | 0.467675 | 8.2:-27835251 | None:intergenic |
| AAACTTGCAAGCAACATACT+TGG | 0.468926 | 8.2:+27836246 | MS.gene011983:CDS |
| CGGAGCATCGTCCCCGACAC+TGG | 0.469935 | 8.2:-27841102 | None:intergenic |
| AGCTAAAGAGGGTAATCTTA+CGG | 0.472647 | 8.2:+27841209 | MS.gene011983:CDS |
| AGGATGCAGTTGATCTTTCG+TGG | 0.479928 | 8.2:-27840851 | None:intergenic |
| CGATTTATTAATGATTTCAA+GGG | 0.480863 | 8.2:-27835266 | None:intergenic |
| TATAAGTTAACCATATCTGC+TGG | 0.483396 | 8.2:-27836205 | None:intergenic |
| TTGAAAAGAGTGAGACATCT+TGG | 0.483464 | 8.2:+27839808 | MS.gene011983:CDS |
| TGTTGGCACCGTTTCCTATG+AGG | 0.484236 | 8.2:+27840808 | MS.gene011983:CDS |
| TGTTCATCCTAATAAAGCAC+TGG | 0.484775 | 8.2:-27840070 | None:intergenic |
| AAGAGCTCAATAGTTTGGGT+TGG | 0.485323 | 8.2:-27836166 | None:intergenic |
| CCCTCGATTTGTTAAGCCGC+AGG | 0.486763 | 8.2:+27837239 | MS.gene011983:CDS |
| AAGCTTAGGCCGCAAACTCA+AGG | 0.491994 | 8.2:+27839632 | MS.gene011983:CDS |
| TTTCACGGGCGGAGCTAAAG+AGG | 0.499217 | 8.2:+27841197 | MS.gene011983:CDS |
| CCCGTCTCAGCTCTTTATGA+AGG | 0.499502 | 8.2:+27840884 | MS.gene011983:CDS |
| GATCGGATAATCACAGGGAC+CGG | 0.502784 | 8.2:-27840048 | None:intergenic |
| TACCTGTTAGCTCAGAAGCT+CGG | 0.504467 | 8.2:+27835053 | MS.gene011983:CDS |
| GTCCAGTTAGAAGCATTGCT+TGG | 0.504971 | 8.2:-27835108 | None:intergenic |
| AATGACAGTGATCACCTCAT+AGG | 0.505003 | 8.2:-27840822 | None:intergenic |
| ATCAGACATAGACGAACCTC+TGG | 0.515415 | 8.2:-27834420 | None:intergenic |
| TCAAGCAGATGGCAAAGGCT+TGG | 0.517708 | 8.2:-27841291 | None:intergenic |
| CGCAGGTGGGATAGAATCAA+TGG | 0.523416 | 8.2:+27837256 | MS.gene011983:CDS |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.525320 | 8.2:-27841287 | None:intergenic |
| GAACAATAGTTGTCTTTGGA+AGG | 0.526784 | 8.2:-27834352 | None:intergenic |
| TGTCGGGGACGATGCTCCGC+AGG | 0.528693 | 8.2:+27841106 | MS.gene011983:CDS |
| ATTGAGAAGGCCACTGCAGA+AGG | 0.529063 | 8.2:+27834572 | MS.gene011983:CDS |
| ATTATTGGTGTCAGAGGCAT+GGG | 0.529756 | 8.2:+27835026 | MS.gene011983:intron |
| AATTATTGGTGTCAGAGGCA+TGG | 0.536641 | 8.2:+27835025 | MS.gene011983:intron |
| ATCTATGAGCAATCTTGGAC+TGG | 0.537627 | 8.2:-27835309 | None:intergenic |
| ATGGCTGAAAATTTATTGAG+AGG | 0.539257 | 8.2:+27835139 | MS.gene011983:CDS |
| TTTCAAATCTATTATCTCCC+CGG | 0.539980 | 8.2:+27837029 | MS.gene011983:CDS |
| AATATTGGAGGTAACGATGT+TGG | 0.541161 | 8.2:-27840923 | None:intergenic |
| TCGATTTGTTAAGCCGCAGG+TGG | 0.541277 | 8.2:+27837242 | MS.gene011983:CDS |
| AACCTATTCAACAGGGACAA+TGG | 0.542913 | 8.2:+27839742 | MS.gene011983:CDS |
| AAGATAATGCTAGTTCATGT+TGG | 0.543636 | 8.2:-27836683 | None:intergenic |
| AGGTACTCGATGATGGCCTC+GGG | 0.547983 | 8.2:-27835337 | None:intergenic |
| AGCTTAGGCCGCAAACTCAA+GGG | 0.550704 | 8.2:+27839633 | MS.gene011983:CDS |
| AGATGCTTTATACGAAGAGC+GGG | 0.554677 | 8.2:+27836638 | MS.gene011983:CDS |
| CCGTCTCAGCTCTTTATGAA+GGG | 0.557348 | 8.2:+27840885 | MS.gene011983:CDS |
| TTAGAATTCAATATCCCGCT+TGG | 0.557985 | 8.2:-27840746 | None:intergenic |
| TCTATAAAGAACTTTCAACT+TGG | 0.558764 | 8.2:+27841148 | MS.gene011983:CDS |
| CGCAGGCCATATTAGTGTGG+TGG | 0.558911 | 8.2:+27841123 | MS.gene011983:CDS |
| GAGACATAGTATTATTGAGA+AGG | 0.559837 | 8.2:+27834559 | MS.gene011983:CDS |
| ACAAGTGCAACTCCATGCAC+CGG | 0.560855 | 8.2:+27835239 | MS.gene011983:CDS |
| GGATAGAATCAATGGAGCCC+AGG | 0.561813 | 8.2:+27837264 | MS.gene011983:CDS |
| TCTGTCTCATAATGTTTCAC+GGG | 0.563535 | 8.2:+27841183 | MS.gene011983:CDS |
| TTCATACCATGGAAGCCTAT+CGG | 0.564608 | 8.2:+27841000 | MS.gene011983:CDS |
| CCCTTCATAAAGAGCTGAGA+CGG | 0.565562 | 8.2:-27840885 | None:intergenic |
| GCACTGGATCGGATAATCAC+AGG | 0.569532 | 8.2:-27840054 | None:intergenic |
| AATCAAATTGTCGACCAAGC+GGG | 0.569918 | 8.2:+27840732 | MS.gene011983:CDS |
| GATCCTTTGCATCTTTCCAG+AGG | 0.572094 | 8.2:+27834404 | MS.gene011983:CDS |
| AGTGATCACCTCATAGGAAA+CGG | 0.575348 | 8.2:-27840816 | None:intergenic |
| TTGATCAACCGATCCAGTGT+CGG | 0.575709 | 8.2:+27841089 | MS.gene011983:CDS |
| AAGATAACAACAGCACGTGC+AGG | 0.577549 | 8.2:-27839831 | None:intergenic |
| TCAGTTCTGGTAGCTCCGAT+AGG | 0.578337 | 8.2:-27841015 | None:intergenic |
| TGACATATTAGATGCTGAAG+AGG | 0.578357 | 8.2:-27834453 | None:intergenic |
| GAAGAATTTACTGAGGAAGA+TGG | 0.579397 | 8.2:+27837193 | MS.gene011983:CDS |
| TTATATCTACTTGAGATGCT+AGG | 0.580402 | 8.2:-27834298 | None:intergenic |
| CCAATGAAAGATTCATACCA+TGG | 0.582725 | 8.2:+27840989 | MS.gene011983:CDS |
| ATCCTAATAAAGCACTGGAT+CGG | 0.584659 | 8.2:-27840065 | None:intergenic |
| GAAGCTTTCAAGAACAAGCA+TGG | 0.585477 | 8.2:-27836143 | None:intergenic |
| CCTTCATAAAGAGCTGAGAC+GGG | 0.585813 | 8.2:-27840884 | None:intergenic |
| GAGTACTCTAGAACAAGTGT+TGG | 0.586614 | 8.2:-27836121 | None:intergenic |
| CCAACAAGATGGCTACATGC+TGG | 0.587008 | 8.2:-27840791 | None:intergenic |
| TAGCTCAGAAGCTCGGGAGA+TGG | 0.588054 | 8.2:+27835060 | MS.gene011983:CDS |
| AGGAAACGGTGCCAACAAGA+TGG | 0.588598 | 8.2:-27840802 | None:intergenic |
| AGTACTCTAGAACAAGTGTT+GGG | 0.588876 | 8.2:-27836120 | None:intergenic |
| TCTCATTGACGTCAAGCAGA+TGG | 0.589615 | 8.2:-27841302 | None:intergenic |
| ATCGGATAATCACAGGGACC+GGG | 0.590150 | 8.2:-27840047 | None:intergenic |
| ACTGTCGTATATAGAGAACT+TGG | 0.591158 | 8.2:-27840684 | None:intergenic |
| GTAGCTCCGATAGGCTTCCA+TGG | 0.591182 | 8.2:-27841006 | None:intergenic |
| GTGATCCTTCCACATTGTTG+AGG | 0.591561 | 8.2:-27839909 | None:intergenic |
| TGCAAATCTATCTGAATCCA+CGG | 0.592462 | 8.2:+27836978 | MS.gene011983:CDS |
| ACCAAAAGAGACCAAACTGC+AGG | 0.594448 | 8.2:+27837300 | MS.gene011983:CDS |
| GTCAGAGTAGCGACAGTGGT+AGG | 0.594482 | 8.2:+27837155 | MS.gene011983:CDS |
| TGAGCAAGCATATGCTCTGT+CGG | 0.594611 | 8.2:+27839682 | MS.gene011983:CDS |
| ATATCCTGATATACTCTCCA+AGG | 0.595785 | 8.2:-27836583 | None:intergenic |
| AGAGATGTTTATGAGTGTCA+AGG | 0.596164 | 8.2:-27841056 | None:intergenic |
| GCTCGTGCTTTCTATGAATG+AGG | 0.596630 | 8.2:+27836270 | MS.gene011983:CDS |
| GAACCTCTGGAAAGATGCAA+AGG | 0.598653 | 8.2:-27834407 | None:intergenic |
| TAGTTCTTGGTCATCCTCCG+TGG | 0.599717 | 8.2:-27836995 | None:intergenic |
| CATCGTCCCCGACACTGGAT+CGG | 0.599982 | 8.2:-27841097 | None:intergenic |
| ACCTGCGGCTTAACAAATCG+AGG | 0.602809 | 8.2:-27837240 | None:intergenic |
| GGAGGTAACGATGTTGGAGT+CGG | 0.604172 | 8.2:-27840917 | None:intergenic |
| TGACGTCAAGCAGATGGCAA+AGG | 0.606195 | 8.2:-27841296 | None:intergenic |
| GCTAGTCAGAGTAGCGACAG+TGG | 0.606198 | 8.2:+27837151 | MS.gene011983:CDS |
| TCAGCAATGAAATACTTACA+TGG | 0.606221 | 8.2:-27840130 | None:intergenic |
| TTCCTCGGTTCCTTCTGCAG+TGG | 0.609602 | 8.2:-27834582 | None:intergenic |
| GACATATTAGATGCTGAAGA+GGG | 0.609712 | 8.2:-27834452 | None:intergenic |
| AGACTCCTCAACAATGTGGA+AGG | 0.611801 | 8.2:+27839904 | MS.gene011983:CDS |
| CGTCTCAGCTCTTTATGAAG+GGG | 0.613180 | 8.2:+27840886 | MS.gene011983:CDS |
| CATTGATTCTATCCCACCTG+CGG | 0.614583 | 8.2:-27837255 | None:intergenic |
| TACTTCTATCATGCTTGATG+AGG | 0.616537 | 8.2:+27837216 | MS.gene011983:CDS |
| GAGATGTTTATGAGTGTCAA+GGG | 0.619622 | 8.2:-27841055 | None:intergenic |
| GTCTCATAATGTTTCACGGG+CGG | 0.621282 | 8.2:+27841186 | MS.gene011983:CDS |
| CCTGCGGCTTAACAAATCGA+GGG | 0.621606 | 8.2:-27837239 | None:intergenic |
| CAAGTGCAACTCCATGCACC+GGG | 0.621748 | 8.2:+27835240 | MS.gene011983:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 8.2:-27841277 | None:intergenic |
| TCTTCGTATAAAGCATCTGA+TGG | 0.624286 | 8.2:-27836633 | None:intergenic |
| CACTGGATCGGATAATCACA+GGG | 0.628720 | 8.2:-27840053 | None:intergenic |
| GTTGGGTCTGTTTCACAAAG+TGG | 0.629469 | 8.2:-27836103 | None:intergenic |
| GTCTCAGCTCTTTATGAAGG+GGG | 0.630906 | 8.2:+27840887 | MS.gene011983:CDS |
| CGATTTGTTAAGCCGCAGGT+GGG | 0.635076 | 8.2:+27837243 | MS.gene011983:CDS |
| AAAGGTATATCAAATATTGG+AGG | 0.636262 | 8.2:-27840935 | None:intergenic |
| TGTGAAGAGATACTTCAAGA+AGG | 0.640562 | 8.2:+27835187 | MS.gene011983:CDS |
| CTCCGCAGGCCATATTAGTG+TGG | 0.641697 | 8.2:+27841120 | MS.gene011983:CDS |
| AACATGTCATCGAAAAGCTT+AGG | 0.643710 | 8.2:+27839618 | MS.gene011983:CDS |
| TTCACGGGCGGAGCTAAAGA+GGG | 0.644674 | 8.2:+27841198 | MS.gene011983:CDS |
| GGCCACTGCAGAAGGAACCG+AGG | 0.645070 | 8.2:+27834580 | MS.gene011983:CDS |
| CAGATGCTTTATACGAAGAG+CGG | 0.646985 | 8.2:+27836637 | MS.gene011983:CDS |
| GCTTAGGCCGCAAACTCAAG+GGG | 0.647695 | 8.2:+27839634 | MS.gene011983:CDS |
| GGCCATCATCGAGTACCTCA+AGG | 0.647947 | 8.2:+27835342 | MS.gene011983:CDS |
| CAATCAAATTGTCGACCAAG+CGG | 0.651811 | 8.2:+27840731 | MS.gene011983:CDS |
| TTATCAAGAACTATGAGCCG+AGG | 0.653648 | 8.2:+27837085 | MS.gene011983:CDS |
| TGTATACAGAGAAAGAACAT+AGG | 0.654541 | 8.2:-27834321 | None:intergenic |
| TGCTCATAGATTCAAGCCCG+AGG | 0.656164 | 8.2:+27835321 | MS.gene011983:CDS |
| CACCACACTAATATGGCCTG+CGG | 0.658776 | 8.2:-27841122 | None:intergenic |
| CCAATTGAACCTATTCAACA+GGG | 0.658968 | 8.2:+27839735 | MS.gene011983:CDS |
| TAGGTTTAAGAAAATAAACA+AGG | 0.661395 | 8.2:+27834646 | MS.gene011983:CDS |
| GATCAACCGATCCAGTGTCG+GGG | 0.678042 | 8.2:+27841091 | MS.gene011983:CDS |
| AGTTACATCCAGAGCAACGT+GGG | 0.678793 | 8.2:-27839712 | None:intergenic |
| GTCAAGACTCCTCAACAATG+TGG | 0.680111 | 8.2:+27839900 | MS.gene011983:CDS |
| TTTCGAATGGATTTACTCCG+GGG | 0.681326 | 8.2:-27837046 | None:intergenic |
| TGCTGCAATAGAGATTGCAG+AGG | 0.695701 | 8.2:+27837120 | MS.gene011983:CDS |
| ATATCCAAAAGCAATTCAGG+TGG | 0.697831 | 8.2:-27839774 | None:intergenic |
| AGTCTTGACGATCTCTAACG+TGG | 0.698293 | 8.2:-27839886 | None:intergenic |
| ATTATGAGACAGATGAACAG+AGG | 0.698328 | 8.2:-27841173 | None:intergenic |
| TGAACTGCAGCATTATCTGG+TGG | 0.700796 | 8.2:-27840710 | None:intergenic |
| GAGTTACATCCAGAGCAACG+TGG | 0.703782 | 8.2:-27839713 | None:intergenic |
| CTTCAGTATGTAAATCATGG+AGG | 0.710846 | 8.2:+27839859 | MS.gene011983:CDS |
| CTTGACGATCTCTAACGTGG+CGG | 0.741325 | 8.2:-27839883 | None:intergenic |
| TGACACAGAAGAATTTACTG+AGG | 0.759370 | 8.2:+27837186 | MS.gene011983:CDS |
| AAATCTATCTGAATCCACGG+AGG | 0.774213 | 8.2:+27836981 | MS.gene011983:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 27834287 | 27841339 | 27834287 | ID=MS.gene011983 |
| chr8.2 | mRNA | 27834287 | 27841339 | 27834287 | ID=MS.gene011983.t1;Parent=MS.gene011983 |
| chr8.2 | exon | 27834287 | 27834667 | 27834287 | ID=MS.gene011983.t1.exon1;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27834287 | 27834667 | 27834287 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27835040 | 27835363 | 27835040 | ID=MS.gene011983.t1.exon2;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27835040 | 27835363 | 27835040 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27836103 | 27836324 | 27836103 | ID=MS.gene011983.t1.exon3;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27836103 | 27836324 | 27836103 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27836477 | 27836719 | 27836477 | ID=MS.gene011983.t1.exon4;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27836477 | 27836719 | 27836477 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27836878 | 27837321 | 27836878 | ID=MS.gene011983.t1.exon5;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27836878 | 27837321 | 27836878 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27837616 | 27837714 | 27837616 | ID=MS.gene011983.t1.exon6;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27837616 | 27837714 | 27837616 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27839594 | 27839953 | 27839594 | ID=MS.gene011983.t1.exon7;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27839594 | 27839953 | 27839594 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27840047 | 27840137 | 27840047 | ID=MS.gene011983.t1.exon8;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27840047 | 27840137 | 27840047 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27840444 | 27840564 | 27840444 | ID=MS.gene011983.t1.exon9;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27840444 | 27840564 | 27840444 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| chr8.2 | exon | 27840667 | 27841339 | 27840667 | ID=MS.gene011983.t1.exon10;Parent=MS.gene011983.t1 |
| chr8.2 | CDS | 27840667 | 27841339 | 27840667 | ID=cds.MS.gene011983.t1;Parent=MS.gene011983.t1 |
| Gene Sequence |
| Protein sequence |