AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011984

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011984.t1 MTR_8g077650 69.516 351 41 5 1 303 1 333 3.32e-162 455
MS.gene011984.t1 MTR_8g077195 47.884 378 115 9 3 303 37 409 9.86e-97 291
MS.gene011984.t1 MTR_5g020580 42.268 388 126 12 3 303 37 413 1.42e-82 255
MS.gene011984.t1 MTR_8g077620 43.396 371 110 12 3 296 36 383 3.12e-72 228
MS.gene011984.t1 MTR_8g077675 39.257 377 134 12 3 298 32 394 3.70e-60 197
MS.gene011984.t1 MTR_1g022370 43.111 225 110 4 84 303 208 419 2.32e-47 164
MS.gene011984.t1 MTR_2g020280 42.128 235 113 6 71 298 68 286 2.74e-45 155
MS.gene011984.t1 MTR_2g020280 41.739 230 121 5 71 298 167 385 1.68e-44 156
MS.gene011984.t1 MTR_2g007930 37.546 269 141 7 48 298 160 419 1.61e-42 151
MS.gene011984.t1 MTR_1g088960 43.119 218 111 4 84 298 187 394 2.11e-42 150
MS.gene011984.t1 MTR_1g098790 38.075 239 118 6 84 298 191 423 8.77e-39 141
MS.gene011984.t1 MTR_8g077640 58.871 124 46 2 178 296 260 383 6.63e-36 133
MS.gene011984.t1 MTR_2g076200 41.892 222 92 10 81 298 175 363 2.73e-35 131
MS.gene011984.t1 MTR_2g076210 38.565 223 99 9 81 298 170 359 1.73e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011984.t1 AT2G18280 37.135 377 145 14 3 303 30 390 1.02e-54 182
MS.gene011984.t1 AT2G18280 37.135 377 145 14 3 303 30 390 1.02e-54 182
MS.gene011984.t1 AT1G47270 43.852 244 95 7 71 303 173 385 6.79e-48 165
MS.gene011984.t1 AT1G47270 43.983 241 99 6 71 303 198 410 9.94e-48 165
MS.gene011984.t1 AT1G47270 43.983 241 99 6 71 303 197 409 1.02e-47 165
MS.gene011984.t1 AT1G25280 41.365 249 104 8 84 298 19 259 1.68e-45 155
MS.gene011984.t1 AT1G25280 41.365 249 104 8 84 298 19 259 1.68e-45 155
MS.gene011984.t1 AT1G25280 41.365 249 104 8 84 298 197 437 1.27e-43 155
MS.gene011984.t1 AT2G47900 44.796 221 104 6 84 298 191 399 1.41e-42 151
MS.gene011984.t1 AT2G47900 44.796 221 104 6 84 298 190 398 1.51e-42 151
MS.gene011984.t1 AT2G47900 44.796 221 104 6 84 298 190 398 1.51e-42 151
MS.gene011984.t1 AT3G06380 37.154 253 130 9 60 298 43 280 7.42e-38 136
MS.gene011984.t1 AT3G06380 37.008 254 131 9 59 298 134 372 5.69e-37 135
MS.gene011984.t1 AT5G18680 40.271 221 110 7 84 298 85 289 6.05e-37 134
MS.gene011984.t1 AT1G76900 38.314 261 107 9 84 298 195 447 1.38e-36 136
MS.gene011984.t1 AT1G76900 38.314 261 107 9 84 298 195 447 1.38e-36 136
MS.gene011984.t1 AT1G76900 38.314 261 107 9 84 298 195 447 1.38e-36 136
MS.gene011984.t1 AT5G18680 40.271 221 110 7 84 298 177 381 2.98e-36 134
MS.gene011984.t1 AT1G43640 34.066 273 146 8 48 298 95 355 6.14e-34 127
MS.gene011984.t1 AT1G43640 37.131 237 119 7 84 298 193 421 1.68e-33 127
MS.gene011984.t1 AT1G53320 41.475 217 99 6 84 298 181 371 8.71e-33 124

Find 80 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTTGCTTCACTGAAAT+AGG 0.203520 8.2:-27849710 None:intergenic
ATCCGGCTTGATCGACAATT+TGG 0.228814 8.2:-27850493 None:intergenic
TTTCAGTTGCACTTAGGTTT+GGG 0.230185 8.2:+27849892 MS.gene011984:CDS
AATGTTGATCGACAATTCTT+TGG 0.246336 8.2:-27850541 None:intergenic
ATGATGCAATGTATTCTTCT+TGG 0.252868 8.2:-27850622 None:intergenic
ATCTTACAGTTTGGAAAGAT+TGG 0.311656 8.2:+27850976 MS.gene011984:CDS
CCCTGTTGAATAGGTTCAAC+TGG 0.343357 8.2:-27849580 None:intergenic
ATCCGATGCAGTGCTTTATT+CGG 0.354028 8.2:+27849836 MS.gene011984:intron
GAACTTGTTGAGCCCAAAAC+TGG 0.355370 8.2:-27850428 None:intergenic
TCCAGTTGAACCTATTCAAC+AGG 0.363499 8.2:+27849579 MS.gene011984:CDS
CTGTCTCAGCTATTCATAAA+GGG 0.367799 8.2:+27850656 MS.gene011984:CDS
ACCCATTGTCCCTGTTGAAT+AGG 0.369804 8.2:-27849589 None:intergenic
ATTACCCTTTCTTGCTCCTC+AGG 0.370302 8.2:-27850955 None:intergenic
GAAAGGGTAATCTTACAGTT+TGG 0.371540 8.2:+27850967 MS.gene011984:CDS
ACAATGGGTAAGTCTGCTTT+TGG 0.377762 8.2:+27849603 MS.gene011984:CDS
ATATCTTATTATTAAATATC+CGG 0.379842 8.2:-27850510 None:intergenic
CCAAGCCTTTGCCATCTGCT+TGG 0.383935 8.2:+27851044 MS.gene011984:CDS
TCAAAAGCAAGGCTCCTAGA+TGG 0.387776 8.2:+27850824 MS.gene011984:CDS
GGTTGAACTGCAGCATCATC+TGG 0.388445 8.2:-27850472 None:intergenic
CCTGTCTCAGCTATTCATAA+AGG 0.399999 8.2:+27850655 MS.gene011984:CDS
TCAGTCCTGGTAGCTCTGAT+TGG 0.423592 8.2:-27850786 None:intergenic
TCTTCTTGGCGAGTGGACTT+TGG 0.427811 8.2:-27850608 None:intergenic
ACCTATTCAACAGGGACAAT+GGG 0.455866 8.2:+27849588 MS.gene011984:CDS
GGGTTGGCACCTAGACTTCA+AGG 0.460220 8.2:+27850861 MS.gene011984:CDS
GAGGTAAAGATGTCAATGTC+AGG 0.460528 8.2:-27850687 None:intergenic
GAAAACGTTTCATCAGATAC+TGG 0.463759 8.2:-27850709 None:intergenic
TTCTCCTTCGCCAACACTGA+AGG 0.471471 8.2:+27850729 MS.gene011984:CDS
ATAAGTTTAGGGCGCGGAAA+AGG 0.480468 8.2:-27851073 None:intergenic
TTGCACTGCTCATCCCATCT+AGG 0.486778 8.2:-27850838 None:intergenic
TTTCTCCTGAGGAGCAAGAA+AGG 0.491680 8.2:+27850950 MS.gene011984:CDS
AAGAATTGTCGATCAACATT+CGG 0.495521 8.2:+27850544 MS.gene011984:CDS
TGGCGAGTGGACTTTGGAAA+TGG 0.496588 8.2:-27850602 None:intergenic
TAACACGTCCCTTGAAGTCT+AGG 0.498472 8.2:-27850870 None:intergenic
GCAGATGGCAAAGGCTTGGA+AGG 0.500254 8.2:-27851040 None:intergenic
TTGAACCTCAGCAAAGAGAA+AGG 0.502713 8.2:+27849677 MS.gene011984:CDS
CCTTTATGAATAGCTGAGAC+AGG 0.505478 8.2:-27850655 None:intergenic
TTCAGTTGCACTTAGGTTTG+GGG 0.516075 8.2:+27849893 MS.gene011984:CDS
CTCCTTCGCCAACACTGAAG+GGG 0.516445 8.2:+27850731 MS.gene011984:CDS
CCAAGCAGATGGCAAAGGCT+TGG 0.517089 8.2:-27851044 None:intergenic
TGATCCCTTTCTCTTTGCTG+AGG 0.520738 8.2:-27849682 None:intergenic
CAAAAGCAAGGCTCCTAGAT+GGG 0.521682 8.2:+27850825 MS.gene011984:CDS
TCTCCTTCGCCAACACTGAA+GGG 0.525573 8.2:+27850730 MS.gene011984:CDS
GTCAAGGGCTCACTCAGTCC+TGG 0.526580 8.2:-27850799 None:intergenic
GGTTCAACTGGAGTTACATC+GGG 0.530037 8.2:-27849568 None:intergenic
GCAAGCCAATCAGAGCTACC+AGG 0.536157 8.2:+27850781 MS.gene011984:CDS
TTCCCCTTCAGTGTTGGCGA+AGG 0.546113 8.2:-27850733 None:intergenic
AACCTATTCAACAGGGACAA+TGG 0.551901 8.2:+27849587 MS.gene011984:CDS
GATCGACAATTCTTTGGAGA+CGG 0.555282 8.2:-27850535 None:intergenic
TTCTCCTGAGGAGCAAGAAA+GGG 0.559662 8.2:+27850951 MS.gene011984:CDS
AAAGGCAGAAGCCAAGCAGA+TGG 0.561114 8.2:-27851055 None:intergenic
AGAAGCCAAGCAGATGGCAA+AGG 0.563592 8.2:-27851049 None:intergenic
TGAACCTCAGCAAAGAGAAA+GGG 0.574927 8.2:+27849678 MS.gene011984:CDS
CGATGCAGTGCTTTATTCGG+AGG 0.578350 8.2:+27849839 MS.gene011984:intron
AGGTTCAACTGGAGTTACAT+CGG 0.583414 8.2:-27849569 None:intergenic
AACCAAATTGTCGATCAAGC+CGG 0.584672 8.2:+27850491 MS.gene011984:CDS
TGAGGTTCAACAGCACGCGC+AGG 0.587298 8.2:-27849664 None:intergenic
AAGGCTTGGAAGGCGGAGAG+TGG 0.587325 8.2:-27851030 None:intergenic
CTAACAAGACGGCTACATGT+TGG 0.589236 8.2:-27850577 None:intergenic
TAGATGGGATGAGCAGTGCA+AGG 0.593291 8.2:+27850840 MS.gene011984:CDS
TTGAAGAGCTCGAGACATCT+CGG 0.605518 8.2:+27849641 MS.gene011984:CDS
TGTCTCAGCTATTCATAAAG+GGG 0.608301 8.2:+27850657 MS.gene011984:CDS
TAGCTCTGATTGGCTTGCAG+AGG 0.609870 8.2:-27850776 None:intergenic
GCCCTTGACACTCAAAAGCA+AGG 0.612932 8.2:+27850813 MS.gene011984:CDS
GGGATGAGCAGTGCAAGGGT+TGG 0.613229 8.2:+27850845 MS.gene011984:CDS
GCCGATATAAGTTTAGGGCG+CGG 0.615651 8.2:-27851079 None:intergenic
TCTCGAGCTCTTCAACCCTA+CGG 0.616335 8.2:-27849633 None:intergenic
GTCTCATAATGTTTCTCCTG+AGG 0.621196 8.2:+27850939 MS.gene011984:CDS
AATGTATTCTTCTTGGCGAG+TGG 0.627171 8.2:-27850615 None:intergenic
TGGAAATGGTGCTAACAAGA+CGG 0.633735 8.2:-27850588 None:intergenic
AGATGGGATGAGCAGTGCAA+GGG 0.635701 8.2:+27850841 MS.gene011984:CDS
TCAGGAGAAACATTATGAGA+CGG 0.641318 8.2:-27850937 None:intergenic
AGGTAAAGATGTCAATGTCA+GGG 0.644230 8.2:-27850686 None:intergenic
GATGGCAAAGGCTTGGAAGG+CGG 0.644428 8.2:-27851037 None:intergenic
GAGTGGATAAGAGTAGTCCA+TGG 0.657388 8.2:-27851013 None:intergenic
GGTTGGCACCTAGACTTCAA+GGG 0.657836 8.2:+27850862 MS.gene011984:CDS
CTTCAAGGGACGTGTTACAG+TGG 0.670332 8.2:+27850876 MS.gene011984:CDS
AACGTTTCATCAGATACTGG+AGG 0.677184 8.2:-27850706 None:intergenic
TGGAACAGATATATTCACCA+TGG 0.684144 8.2:+27850996 MS.gene011984:CDS
CCAGTTGAACCTATTCAACA+GGG 0.686684 8.2:+27849580 MS.gene011984:CDS
TGAACTGCAGCATCATCTGG+AGG 0.713495 8.2:-27850469 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTTATTATTAAATATC+CGG - chr8.2:27850513-27850532 None:intergenic 10.0%
!! AATAGAACATAAAAAATATG+AGG - chr8.2:27849780-27849799 None:intergenic 15.0%
!! ATAGAACATAAAAAATATGA+GGG - chr8.2:27849779-27849798 None:intergenic 15.0%
!!! ATCAAGTTGTAAAGATTATA+AGG - chr8.2:27850396-27850415 None:intergenic 20.0%
!!! TCAAGTTGTAAAGATTATAA+GGG - chr8.2:27850395-27850414 None:intergenic 20.0%
!!! TTACAACTTGATTTTTATAC+AGG + chr8.2:27850404-27850423 MS.gene011984:intron 20.0%
! CAAGTTGTAAAGATTATAAG+GGG - chr8.2:27850394-27850413 None:intergenic 25.0%
! CATAAAAAATATGAGGGAAA+AGG - chr8.2:27849773-27849792 None:intergenic 25.0%
! GAAAAATCGATAGAATAGAA+GGG - chr8.2:27850365-27850384 None:intergenic 25.0%
! TGAAAAATCGATAGAATAGA+AGG - chr8.2:27850366-27850385 None:intergenic 25.0%
!!! GTGTTTAAACATCTCTTTTT+TGG + chr8.2:27850171-27850190 MS.gene011984:intron 25.0%
AAGAATTGTCGATCAACATT+CGG + chr8.2:27850544-27850563 MS.gene011984:CDS 30.0%
AATGTTGATCGACAATTCTT+TGG - chr8.2:27850544-27850563 None:intergenic 30.0%
ATCTTACAGTTTGGAAAGAT+TGG + chr8.2:27850976-27850995 MS.gene011984:CDS 30.0%
ATGATGCAATGTATTCTTCT+TGG - chr8.2:27850625-27850644 None:intergenic 30.0%
ATTACTTGCTTCACTGAAAT+AGG - chr8.2:27849713-27849732 None:intergenic 30.0%
CATTGTCTTAGAAAAAGAGA+TGG - chr8.2:27849948-27849967 None:intergenic 30.0%
GTTTGCTTGTAATTGTATAG+CGG + chr8.2:27850193-27850212 MS.gene011984:intron 30.0%
TAGAAAAAGAGATGGAATGT+TGG - chr8.2:27849940-27849959 None:intergenic 30.0%
TATGAGGGAAAAGGATAAAT+TGG - chr8.2:27849764-27849783 None:intergenic 30.0%
TTGTAAAGATTATAAGGGGA+TGG - chr8.2:27850390-27850409 None:intergenic 30.0%
! TTTTATACAGGTCCAGTTTT+GGG + chr8.2:27850416-27850435 MS.gene011984:intron 30.0%
! TTTTTATACAGGTCCAGTTT+TGG + chr8.2:27850415-27850434 MS.gene011984:intron 30.0%
!! ACAAACTTGCTCTAAAGTTA+TGG + chr8.2:27850043-27850062 MS.gene011984:intron 30.0%
!! CAAACTTGCTCTAAAGTTAT+GGG + chr8.2:27850044-27850063 MS.gene011984:intron 30.0%
AGGTAAAGATGTCAATGTCA+GGG - chr8.2:27850689-27850708 None:intergenic 35.0%
CTGTCTCAGCTATTCATAAA+GGG + chr8.2:27850656-27850675 MS.gene011984:CDS 35.0%
GAAAACGTTTCATCAGATAC+TGG - chr8.2:27850712-27850731 None:intergenic 35.0%
GAAAGGGTAATCTTACAGTT+TGG + chr8.2:27850967-27850986 MS.gene011984:CDS 35.0%
GCGGTTAATAACAACTTATC+AGG - chr8.2:27850227-27850246 None:intergenic 35.0%
TAAATTATTCGCCCACTTTC+TGG + chr8.2:27849732-27849751 MS.gene011984:intron 35.0%
TCAGGAGAAACATTATGAGA+CGG - chr8.2:27850940-27850959 None:intergenic 35.0%
TGGAACAGATATATTCACCA+TGG + chr8.2:27850996-27851015 MS.gene011984:CDS 35.0%
TGTCTCAGCTATTCATAAAG+GGG + chr8.2:27850657-27850676 MS.gene011984:CDS 35.0%
TTTCAGTTGCACTTAGGTTT+GGG + chr8.2:27849892-27849911 MS.gene011984:CDS 35.0%
! AATTGGATTAGACCAGAAAG+TGG - chr8.2:27849747-27849766 None:intergenic 35.0%
! AGTTGTTATTAACCGCCAAT+AGG + chr8.2:27850231-27850250 MS.gene011984:intron 35.0%
! ATTGGATTAGACCAGAAAGT+GGG - chr8.2:27849746-27849765 None:intergenic 35.0%
! CAAACTTTTCAGTTGCACTT+AGG + chr8.2:27849886-27849905 MS.gene011984:CDS 35.0%
! TTTTCAGTTGCACTTAGGTT+TGG + chr8.2:27849891-27849910 MS.gene011984:CDS 35.0%
!! TAAAGTGAGGCAAGTTTTGA+TGG + chr8.2:27850322-27850341 MS.gene011984:intron 35.0%
AACCAAATTGTCGATCAAGC+CGG + chr8.2:27850491-27850510 MS.gene011984:CDS 40.0%
AACCTATTCAACAGGGACAA+TGG + chr8.2:27849587-27849606 MS.gene011984:CDS 40.0%
AACGTTTCATCAGATACTGG+AGG - chr8.2:27850709-27850728 None:intergenic 40.0%
AATGTATTCTTCTTGGCGAG+TGG - chr8.2:27850618-27850637 None:intergenic 40.0%
ACCTATTCAACAGGGACAAT+GGG + chr8.2:27849588-27849607 MS.gene011984:CDS 40.0%
AGGTTCAACTGGAGTTACAT+CGG - chr8.2:27849572-27849591 None:intergenic 40.0%
CCAGTTGAACCTATTCAACA+GGG + chr8.2:27849580-27849599 MS.gene011984:CDS 40.0%
CCTGTCTCAGCTATTCATAA+AGG + chr8.2:27850655-27850674 MS.gene011984:CDS 40.0%
CCTTTATGAATAGCTGAGAC+AGG - chr8.2:27850658-27850677 None:intergenic 40.0%
CTTCATGTGTATGAATAGCC+CGG + chr8.2:27849802-27849821 MS.gene011984:intron 40.0%
GAGGTAAAGATGTCAATGTC+AGG - chr8.2:27850690-27850709 None:intergenic 40.0%
GTCTCATAATGTTTCTCCTG+AGG + chr8.2:27850939-27850958 MS.gene011984:CDS 40.0%
TCCAGTTGAACCTATTCAAC+AGG + chr8.2:27849579-27849598 MS.gene011984:CDS 40.0%
TGAACCTCAGCAAAGAGAAA+GGG + chr8.2:27849678-27849697 MS.gene011984:CDS 40.0%
TTCAGTTGCACTTAGGTTTG+GGG + chr8.2:27849893-27849912 MS.gene011984:CDS 40.0%
TTGAACCTCAGCAAAGAGAA+AGG + chr8.2:27849677-27849696 MS.gene011984:CDS 40.0%
! ACAATGGGTAAGTCTGCTTT+TGG + chr8.2:27849603-27849622 MS.gene011984:CDS 40.0%
! ATCCGATGCAGTGCTTTATT+CGG + chr8.2:27849836-27849855 MS.gene011984:intron 40.0%
! GATCGACAATTCTTTGGAGA+CGG - chr8.2:27850538-27850557 None:intergenic 40.0%
! GCTTTTGGACTTAATCCGTA+GGG + chr8.2:27849618-27849637 MS.gene011984:CDS 40.0%
! TGCTTTTGGACTTAATCCGT+AGG + chr8.2:27849617-27849636 MS.gene011984:CDS 40.0%
! TGGAAATGGTGCTAACAAGA+CGG - chr8.2:27850591-27850610 None:intergenic 40.0%
! TTTGGGGCCATGTAAGTATT+CGG + chr8.2:27849909-27849928 MS.gene011984:intron 40.0%
!! GTTCAAACTTGCTGTCCTAT+TGG - chr8.2:27850249-27850268 None:intergenic 40.0%
ACCCATTGTCCCTGTTGAAT+AGG - chr8.2:27849592-27849611 None:intergenic 45.0%
ATTACCCTTTCTTGCTCCTC+AGG - chr8.2:27850958-27850977 None:intergenic 45.0%
CAAAAGCAAGGCTCCTAGAT+GGG + chr8.2:27850825-27850844 MS.gene011984:CDS 45.0%
CACTTTACCAGCACATTTGC+TGG - chr8.2:27850309-27850328 None:intergenic 45.0%
CCCTGTTGAATAGGTTCAAC+TGG - chr8.2:27849583-27849602 None:intergenic 45.0%
CGGGCTATTCATACACATGA+AGG - chr8.2:27849804-27849823 None:intergenic 45.0%
CTAACAAGACGGCTACATGT+TGG - chr8.2:27850580-27850599 None:intergenic 45.0%
GAGTGGATAAGAGTAGTCCA+TGG - chr8.2:27851016-27851035 None:intergenic 45.0%
GGAGCAACCGAATACTTACA+TGG - chr8.2:27849919-27849938 None:intergenic 45.0%
GGTTCAACTGGAGTTACATC+GGG - chr8.2:27849571-27849590 None:intergenic 45.0%
TAACACGTCCCTTGAAGTCT+AGG - chr8.2:27850873-27850892 None:intergenic 45.0%
TCAAAAGCAAGGCTCCTAGA+TGG + chr8.2:27850824-27850843 MS.gene011984:CDS 45.0%
TGATCCCTTTCTCTTTGCTG+AGG - chr8.2:27849685-27849704 None:intergenic 45.0%
TTCTCCTGAGGAGCAAGAAA+GGG + chr8.2:27850951-27850970 MS.gene011984:CDS 45.0%
TTGAAGAGCTCGAGACATCT+CGG + chr8.2:27849641-27849660 MS.gene011984:CDS 45.0%
TTTCTCCTGAGGAGCAAGAA+AGG + chr8.2:27850950-27850969 MS.gene011984:CDS 45.0%
! ATCCGGCTTGATCGACAATT+TGG - chr8.2:27850496-27850515 None:intergenic 45.0%
! GCAAATGTGCTGGTAAAGTG+AGG + chr8.2:27850309-27850328 MS.gene011984:intron 45.0%
! TGAGTTTTCCCCTTCAGTGT+TGG - chr8.2:27850742-27850761 None:intergenic 45.0%
!! AGCCTTGCTTTTGAGTGTCA+AGG - chr8.2:27850818-27850837 None:intergenic 45.0%
!! CAAACTTGCTGTCCTATTGG+CGG - chr8.2:27850246-27850265 None:intergenic 45.0%
!! CTCCGAATAAAGCACTGCAT+CGG - chr8.2:27849841-27849860 None:intergenic 45.0%
!! GAACTTGTTGAGCCCAAAAC+TGG - chr8.2:27850431-27850450 None:intergenic 45.0%
!! GCCTTGCTTTTGAGTGTCAA+GGG - chr8.2:27850817-27850836 None:intergenic 45.0%
AAAGGCAGAAGCCAAGCAGA+TGG - chr8.2:27851058-27851077 None:intergenic 50.0%
AGAAGCCAAGCAGATGGCAA+AGG - chr8.2:27851052-27851071 None:intergenic 50.0%
AGATGGGATGAGCAGTGCAA+GGG + chr8.2:27850841-27850860 MS.gene011984:CDS 50.0%
AGCACTGCATCGGATGATCA+CGG - chr8.2:27849831-27849850 None:intergenic 50.0%
CTTCAAGGGACGTGTTACAG+TGG + chr8.2:27850876-27850895 MS.gene011984:CDS 50.0%
GCCCTTGACACTCAAAAGCA+AGG + chr8.2:27850813-27850832 MS.gene011984:CDS 50.0%
GGTTGAACTGCAGCATCATC+TGG - chr8.2:27850475-27850494 None:intergenic 50.0%
GGTTGGCACCTAGACTTCAA+GGG + chr8.2:27850862-27850881 MS.gene011984:CDS 50.0%
TAGATGGGATGAGCAGTGCA+AGG + chr8.2:27850840-27850859 MS.gene011984:CDS 50.0%
TCTCAAGCCAGCAAATGTGC+TGG + chr8.2:27850299-27850318 MS.gene011984:intron 50.0%
TCTCCTTCGCCAACACTGAA+GGG + chr8.2:27850730-27850749 MS.gene011984:CDS 50.0%
TCTCGAGCTCTTCAACCCTA+CGG - chr8.2:27849636-27849655 None:intergenic 50.0%
TGAACTGCAGCATCATCTGG+AGG - chr8.2:27850472-27850491 None:intergenic 50.0%
TTCTCCTTCGCCAACACTGA+AGG + chr8.2:27850729-27850748 MS.gene011984:CDS 50.0%
TTGCACTGCTCATCCCATCT+AGG - chr8.2:27850841-27850860 None:intergenic 50.0%
! CGATGCAGTGCTTTATTCGG+AGG + chr8.2:27849839-27849858 MS.gene011984:intron 50.0%
! TCTTCTTGGCGAGTGGACTT+TGG - chr8.2:27850611-27850630 None:intergenic 50.0%
! TGGCGAGTGGACTTTGGAAA+TGG - chr8.2:27850605-27850624 None:intergenic 50.0%
!! TAGCTCTGATTGGCTTGCAG+AGG - chr8.2:27850779-27850798 None:intergenic 50.0%
!! TCAGTCCTGGTAGCTCTGAT+TGG - chr8.2:27850789-27850808 None:intergenic 50.0%
CACTGCATCGGATGATCACG+GGG - chr8.2:27849829-27849848 None:intergenic 55.0%
CCAAGCAGATGGCAAAGGCT+TGG - chr8.2:27851047-27851066 None:intergenic 55.0%
CCAAGCCTTTGCCATCTGCT+TGG + chr8.2:27851044-27851063 MS.gene011984:CDS 55.0%
CTCCTTCGCCAACACTGAAG+GGG + chr8.2:27850731-27850750 MS.gene011984:CDS 55.0%
GATGGCAAAGGCTTGGAAGG+CGG - chr8.2:27851040-27851059 None:intergenic 55.0%
GCAAGCCAATCAGAGCTACC+AGG + chr8.2:27850781-27850800 MS.gene011984:CDS 55.0%
GCACTGCATCGGATGATCAC+GGG - chr8.2:27849830-27849849 None:intergenic 55.0%
GCAGATGGCAAAGGCTTGGA+AGG - chr8.2:27851043-27851062 None:intergenic 55.0%
! GGGTTGGCACCTAGACTTCA+AGG + chr8.2:27850861-27850880 MS.gene011984:CDS 55.0%
!! TTCCCCTTCAGTGTTGGCGA+AGG - chr8.2:27850736-27850755 None:intergenic 55.0%
AAGGCTTGGAAGGCGGAGAG+TGG - chr8.2:27851033-27851052 None:intergenic 60.0%
ATCGGATGATCACGGGGACC+GGG - chr8.2:27849823-27849842 None:intergenic 60.0%
CATCGGATGATCACGGGGAC+CGG - chr8.2:27849824-27849843 None:intergenic 60.0%
GGGATGAGCAGTGCAAGGGT+TGG + chr8.2:27850845-27850864 MS.gene011984:CDS 60.0%
GTCAAGGGCTCACTCAGTCC+TGG - chr8.2:27850802-27850821 None:intergenic 60.0%
TGAGGTTCAACAGCACGCGC+AGG - chr8.2:27849667-27849686 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 27849553 27851089 27849553 ID=MS.gene011984
chr8.2 mRNA 27849553 27851089 27849553 ID=MS.gene011984.t1;Parent=MS.gene011984
chr8.2 exon 27849553 27849727 27849553 ID=MS.gene011984.t1.exon1;Parent=MS.gene011984.t1
chr8.2 CDS 27849553 27849727 27849553 ID=cds.MS.gene011984.t1;Parent=MS.gene011984.t1
chr8.2 exon 27849847 27849919 27849847 ID=MS.gene011984.t1.exon2;Parent=MS.gene011984.t1
chr8.2 CDS 27849847 27849919 27849847 ID=cds.MS.gene011984.t1;Parent=MS.gene011984.t1
chr8.2 exon 27850426 27851089 27850426 ID=MS.gene011984.t1.exon3;Parent=MS.gene011984.t1
chr8.2 CDS 27850426 27851089 27850426 ID=cds.MS.gene011984.t1;Parent=MS.gene011984.t1
Gene Sequence

>MS.gene011984

ATGGAAAATGTTGCTCCCGATGTAACTCCAGTTGAACCTATTCAACAGGGACAATGGGTAAGTCTGCTTTTGGACTTAATCCGTAGGGTTGAAGAGCTCGAGACATCTCGGCCTGCGCGTGCTGTTGAACCTCAGCAAAGAGAAAGGGATCACATTTCCTATTTCAGTGAAGCAAGTAATAAATTATTCGCCCACTTTCTGGTCTAATCCAATTTATCCTTTTCCCTCATATTTTTTATGTTCTATTTCCTTCATGTGTATGAATAGCCCGGTCCCCGTGATCATCCGATGCAGTGCTTTATTCGGAGGAACAAAATGAGAGAATCATCACTTCAAACTTTTCAGTTGCACTTAGGTTTGGGGCCATGTAAGTATTCGGTTGCTCCAACATTCCATCTCTTTTTCTAAGACAATGAACATCAATTTTCAAATTTCTAATCTTTGAGTTACTCTTCAAGCTTGCATTCATGACAGTGAATGTTGAATTTCAACAAACTTGCTCTAAAGTTATGGGTTTTATTATTTATTTATTGTCATTCAGATTGTGATCTTTTAAGTTACTCTTCAAGCTTTCATTCATCGACATTTTTTTTTTTTTTTTTGCATCTCATGATCTACGTGTTTAAACATCTCTTTTTTGGTTTGCTTGTAATTGTATAGCGGCGAATGAACCTGATAAGTTGTTATTAACCGCCAATAGGACAGCAAGTTTGAACTTTGTCATATTCTTCGCTGCAAACAATTTCTCTCAAGCCAGCAAATGTGCTGGTAAAGTGAGGCAAGTTTTGATGGATAGAAACATTTATTCACCCTTCTATTCTATCGATTTTTCATCCATCCCCTTATAATCTTTACAACTTGATTTTTATACAGGTCCAGTTTTGGGCTCAACAAGTTCTTTGTATACGACAATCAACCTCCAGATGATGCTGCAGTTCAACCAAATTGTCGATCAAGCCGGATATTTAATAATAAGATATCACCGTCTCCAAAGAATTGTCGATCAACATTCGGAAGAATTGCTCCAACATGTAGCCGTCTTGTTAGCACCATTTCCAAAGTCCACTCGCCAAGAAGAATACATTGCATCATGAATTCTATACCTGTCTCAGCTATTCATAAAGGGGAAAATGCCCTGACATTGACATCTTTACCTCCAGTATCTGATGAAACGTTTTCTCCTTCGCCAACACTGAAGGGGAAAACTCAAATGAGAGATTCATCCTCTGCAAGCCAATCAGAGCTACCAGGACTGAGTGAGCCCTTGACACTCAAAAGCAAGGCTCCTAGATGGGATGAGCAGTGCAAGGGTTGGCACCTAGACTTCAAGGGACGTGTTACAGTGGCATCTGTGAAAAACTTTCAATTTGTAGCTGCTGTTGATCCGTCTCATAATGTTTCTCCTGAGGAGCAAGAAAGGGTAATCTTACAGTTTGGAAAGATTGGAACAGATATATTCACCATGGACTACTCTTATCCACTCTCCGCCTTCCAAGCCTTTGCCATCTGCTTGGCTTCTGCCTTTTCCGCGCCCTAA
Protein sequence

>MS.gene011984.t1

MENVAPDVTPVEPIQQGQWVSLLLDLIRRVEELETSRPARAVEPQQRERDHISYFSEAMLYSEEQNERIITSNFSVALRFGAMSSFGLNKFFVYDNQPPDDAAVQPNCRSSRIFNNKISPSPKNCRSTFGRIAPTCSRLVSTISKVHSPRRIHCIMNSIPVSAIHKGENALTLTSLPPVSDETFSPSPTLKGKTQMRDSSSASQSELPGLSEPLTLKSKAPRWDEQCKGWHLDFKGRVTVASVKNFQFVAAVDPSHNVSPEEQERVILQFGKIGTDIFTMDYSYPLSAFQAFAICLASAFSAP