Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011985.t1 | XP_024628855.1 | 84.9 | 324 | 19 | 1 | 1 | 294 | 1 | 324 | 7.10E-152 | 546.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011985.t1 | Q8GVE5 | 39.3 | 394 | 124 | 11 | 1 | 290 | 1 | 383 | 3.7e-56 | 219.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011985.t1 | A0A396GTK9 | 84.9 | 324 | 19 | 2 | 1 | 294 | 1 | 324 | 9.7e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011985.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011985.t1 | MTR_8g077640 | 78.947 | 342 | 24 | 2 | 1 | 294 | 46 | 387 | 0.0 | 527 |
| MS.gene011985.t1 | MTR_8g077620 | 45.455 | 385 | 113 | 10 | 1 | 290 | 1 | 383 | 2.18e-86 | 264 |
| MS.gene011985.t1 | MTR_1g022370 | 39.467 | 413 | 126 | 12 | 1 | 290 | 1 | 412 | 1.43e-69 | 221 |
| MS.gene011985.t1 | MTR_8g077195 | 60.000 | 205 | 44 | 4 | 1 | 167 | 1 | 205 | 3.48e-69 | 220 |
| MS.gene011985.t1 | MTR_8g077195 | 60.000 | 125 | 49 | 1 | 166 | 290 | 279 | 402 | 4.61e-41 | 147 |
| MS.gene011985.t1 | MTR_8g077675 | 56.784 | 199 | 52 | 3 | 1 | 167 | 1 | 197 | 2.30e-64 | 207 |
| MS.gene011985.t1 | MTR_8g077675 | 47.656 | 128 | 58 | 3 | 166 | 290 | 271 | 392 | 2.60e-23 | 99.0 |
| MS.gene011985.t1 | MTR_8g077650 | 41.566 | 332 | 115 | 12 | 32 | 290 | 1 | 326 | 6.30e-62 | 199 |
| MS.gene011985.t1 | MTR_5g020580 | 52.174 | 207 | 59 | 5 | 1 | 167 | 1 | 207 | 1.91e-57 | 190 |
| MS.gene011985.t1 | MTR_5g020580 | 39.394 | 198 | 101 | 5 | 109 | 290 | 212 | 406 | 5.66e-31 | 120 |
| MS.gene011985.t1 | MTR_2g076200 | 36.842 | 323 | 123 | 6 | 49 | 291 | 41 | 362 | 1.43e-52 | 176 |
| MS.gene011985.t1 | MTR_2g076210 | 35.030 | 334 | 135 | 10 | 38 | 290 | 25 | 357 | 6.23e-41 | 145 |
| MS.gene011985.t1 | MTR_2g007930 | 37.611 | 226 | 99 | 6 | 1 | 185 | 1 | 225 | 2.32e-34 | 129 |
| MS.gene011985.t1 | MTR_2g007930 | 46.465 | 99 | 46 | 2 | 198 | 290 | 320 | 417 | 1.61e-17 | 82.4 |
| MS.gene011985.t1 | MTR_1g098790 | 36.279 | 215 | 94 | 5 | 1 | 174 | 1 | 213 | 6.59e-32 | 122 |
| MS.gene011985.t1 | MTR_1g098790 | 45.545 | 101 | 42 | 3 | 202 | 290 | 322 | 421 | 5.89e-15 | 75.1 |
| MS.gene011985.t1 | MTR_2g020280 | 42.484 | 153 | 53 | 3 | 50 | 167 | 39 | 191 | 7.19e-31 | 119 |
| MS.gene011985.t1 | MTR_2g020280 | 53.571 | 84 | 36 | 3 | 207 | 290 | 303 | 383 | 6.90e-18 | 83.6 |
| MS.gene011985.t1 | MTR_1g088960 | 35.514 | 214 | 97 | 6 | 1 | 176 | 1 | 211 | 8.58e-30 | 116 |
| MS.gene011985.t1 | MTR_1g088960 | 51.546 | 97 | 43 | 3 | 194 | 290 | 300 | 392 | 1.62e-19 | 88.2 |
| MS.gene011985.t1 | MTR_2g020280 | 56.180 | 89 | 34 | 2 | 84 | 167 | 4 | 92 | 6.87e-24 | 99.0 |
| MS.gene011985.t1 | MTR_2g020280 | 53.571 | 84 | 36 | 3 | 207 | 290 | 204 | 284 | 3.41e-18 | 83.2 |
| MS.gene011985.t1 | MTR_1g023800 | 37.324 | 142 | 53 | 4 | 1 | 108 | 1 | 140 | 4.72e-16 | 74.3 |
| MS.gene011985.t1 | MTR_0210s0010 | 48.718 | 78 | 34 | 3 | 85 | 160 | 31 | 104 | 3.14e-13 | 65.1 |
| MS.gene011985.t1 | MTR_0479s0040 | 49.254 | 67 | 29 | 2 | 79 | 143 | 12 | 75 | 1.34e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011985.t1 | AT1G47270 | 36.176 | 387 | 141 | 12 | 1 | 290 | 1 | 378 | 1.45e-57 | 189 |
| MS.gene011985.t1 | AT1G47270 | 36.176 | 387 | 141 | 12 | 1 | 290 | 26 | 403 | 2.92e-57 | 189 |
| MS.gene011985.t1 | AT1G47270 | 36.176 | 387 | 141 | 12 | 1 | 290 | 25 | 402 | 3.38e-57 | 189 |
| MS.gene011985.t1 | AT1G53320 | 37.500 | 328 | 118 | 7 | 50 | 291 | 44 | 370 | 3.03e-54 | 181 |
| MS.gene011985.t1 | AT2G18280 | 42.578 | 256 | 94 | 9 | 1 | 215 | 1 | 244 | 1.60e-46 | 161 |
| MS.gene011985.t1 | AT2G18280 | 47.541 | 122 | 58 | 3 | 169 | 290 | 268 | 383 | 7.50e-24 | 100 |
| MS.gene011985.t1 | AT2G18280 | 42.578 | 256 | 94 | 9 | 1 | 215 | 1 | 244 | 1.60e-46 | 161 |
| MS.gene011985.t1 | AT2G18280 | 47.541 | 122 | 58 | 3 | 169 | 290 | 268 | 383 | 7.50e-24 | 100 |
| MS.gene011985.t1 | AT2G47900 | 38.235 | 204 | 88 | 4 | 1 | 166 | 1 | 204 | 6.50e-35 | 130 |
| MS.gene011985.t1 | AT2G47900 | 51.111 | 90 | 29 | 3 | 207 | 290 | 316 | 396 | 1.15e-17 | 82.8 |
| MS.gene011985.t1 | AT2G47900 | 38.235 | 204 | 88 | 4 | 1 | 166 | 1 | 204 | 6.50e-35 | 130 |
| MS.gene011985.t1 | AT2G47900 | 51.111 | 90 | 29 | 3 | 207 | 290 | 316 | 396 | 1.15e-17 | 82.8 |
| MS.gene011985.t1 | AT2G47900 | 37.073 | 205 | 90 | 4 | 1 | 166 | 1 | 205 | 1.43e-33 | 127 |
| MS.gene011985.t1 | AT2G47900 | 51.111 | 90 | 29 | 3 | 207 | 290 | 317 | 397 | 1.21e-17 | 82.8 |
| MS.gene011985.t1 | AT1G76900 | 44.444 | 153 | 49 | 3 | 50 | 166 | 57 | 209 | 5.53e-31 | 120 |
| MS.gene011985.t1 | AT1G76900 | 44.000 | 100 | 39 | 3 | 207 | 290 | 347 | 445 | 6.14e-15 | 75.1 |
| MS.gene011985.t1 | AT1G76900 | 44.444 | 153 | 49 | 3 | 50 | 166 | 57 | 209 | 5.53e-31 | 120 |
| MS.gene011985.t1 | AT1G76900 | 44.000 | 100 | 39 | 3 | 207 | 290 | 347 | 445 | 6.14e-15 | 75.1 |
| MS.gene011985.t1 | AT1G76900 | 44.444 | 153 | 49 | 3 | 50 | 166 | 57 | 209 | 5.53e-31 | 120 |
| MS.gene011985.t1 | AT1G76900 | 44.000 | 100 | 39 | 3 | 207 | 290 | 347 | 445 | 6.14e-15 | 75.1 |
| MS.gene011985.t1 | AT1G25280 | 41.361 | 191 | 71 | 5 | 50 | 204 | 59 | 244 | 1.95e-29 | 116 |
| MS.gene011985.t1 | AT1G25280 | 44.545 | 110 | 49 | 2 | 192 | 290 | 327 | 435 | 1.04e-16 | 80.1 |
| MS.gene011985.t1 | AT1G43640 | 36.318 | 201 | 84 | 6 | 13 | 177 | 26 | 218 | 7.44e-29 | 114 |
| MS.gene011985.t1 | AT1G43640 | 38.158 | 152 | 58 | 3 | 62 | 177 | 1 | 152 | 2.45e-23 | 98.6 |
| MS.gene011985.t1 | AT3G06380 | 35.088 | 171 | 72 | 5 | 29 | 163 | 15 | 182 | 9.96e-23 | 97.1 |
| MS.gene011985.t1 | AT3G06380 | 55.294 | 85 | 32 | 3 | 207 | 290 | 291 | 370 | 8.33e-19 | 85.9 |
| MS.gene011985.t1 | AT5G18680 | 35.057 | 174 | 76 | 5 | 26 | 163 | 16 | 188 | 2.01e-22 | 96.3 |
| MS.gene011985.t1 | AT5G18680 | 51.136 | 88 | 38 | 3 | 207 | 290 | 293 | 379 | 5.08e-17 | 80.9 |
| MS.gene011985.t1 | AT3G06380 | 54.762 | 84 | 34 | 2 | 207 | 290 | 199 | 278 | 4.08e-19 | 85.5 |
| MS.gene011985.t1 | AT3G06380 | 46.429 | 84 | 40 | 2 | 85 | 163 | 7 | 90 | 1.13e-17 | 81.6 |
| MS.gene011985.t1 | AT5G18680 | 46.739 | 92 | 44 | 2 | 77 | 163 | 5 | 96 | 8.35e-18 | 82.0 |
| MS.gene011985.t1 | AT5G18680 | 51.136 | 88 | 38 | 3 | 207 | 290 | 201 | 287 | 2.26e-17 | 80.9 |
| MS.gene011985.t1 | AT1G25280 | 44.545 | 110 | 49 | 2 | 192 | 290 | 149 | 257 | 2.16e-17 | 80.5 |
| MS.gene011985.t1 | AT1G25280 | 44.545 | 110 | 49 | 2 | 192 | 290 | 149 | 257 | 2.16e-17 | 80.5 |
Find 67 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACATTTCTGTTGTATT+TGG | 0.211959 | 8.2:+27854414 | MS.gene011985:CDS |
| ATCCGATACATTGCTTTATA+AGG | 0.216396 | 8.2:+27854377 | MS.gene011985:CDS |
| CCCTTAGGAAGAGGTTTAAT+TGG | 0.219248 | 8.2:-27854047 | None:intergenic |
| TGGTTGGTGCCCCGACTTCA+TGG | 0.253666 | 8.2:+27855136 | MS.gene011985:CDS |
| TTTCTCCTGGAGTGCGAAAA+TGG | 0.301102 | 8.2:+27855225 | MS.gene011985:CDS |
| TCTACCACGTGAATTGCTTT+TGG | 0.303093 | 8.2:+27854082 | MS.gene011985:CDS |
| GTTGGACCTTCTTATCCTTT+TGG | 0.333127 | 8.2:-27854742 | None:intergenic |
| AATGAGCCTCTGCTCAATTC+TGG | 0.343539 | 8.2:-27855062 | None:intergenic |
| ATGAGAGATTCATACTTTGC+AGG | 0.355432 | 8.2:+27855026 | MS.gene011985:CDS |
| AAATGGCCAATCTTGCAATT+AGG | 0.381085 | 8.2:+27855242 | MS.gene011985:CDS |
| GCGCTTCCTAATTGCAAGAT+TGG | 0.386393 | 8.2:-27855248 | None:intergenic |
| TCAATTCTGGTAGCTTTGAT+AGG | 0.392242 | 8.2:-27855049 | None:intergenic |
| ACCTCTTCCTAAGGGAGAAT+GGG | 0.402298 | 8.2:+27854055 | MS.gene011985:CDS |
| AACCTCTTCCTAAGGGAGAA+TGG | 0.415926 | 8.2:+27854054 | MS.gene011985:CDS |
| TCCAATTAAACCTCTTCCTA+AGG | 0.420786 | 8.2:+27854046 | MS.gene011985:CDS |
| TGGAGCAAACGCCCGCTCTC+AGG | 0.436664 | 8.2:-27853990 | None:intergenic |
| AGACTTTCCCATTCTCCCTT+AGG | 0.438642 | 8.2:-27854062 | None:intergenic |
| TTAACACGGCCCATGAAGTC+GGG | 0.459632 | 8.2:-27855146 | None:intergenic |
| TTCTTCTTCACCAGCACTGA+AGG | 0.461098 | 8.2:+27854992 | MS.gene011985:CDS |
| TGTTGTTGTCGTCTGTGCTT+CGG | 0.473475 | 8.2:+27854154 | MS.gene011985:CDS |
| TCTCACTCTCTTCAACCTTA+CGG | 0.479526 | 8.2:-27854112 | None:intergenic |
| GTCCAACTTCGTCATATCCT+TGG | 0.481842 | 8.2:+27854758 | MS.gene011985:CDS |
| ACGACAACAACAGCACGCGC+AGG | 0.482373 | 8.2:-27854143 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.2:+27854120 | MS.gene011985:CDS |
| CGATCTCATAATGTTTCTCC+TGG | 0.484646 | 8.2:+27855212 | MS.gene011985:CDS |
| GGTTGGTGCCCCGACTTCAT+GGG | 0.487956 | 8.2:+27855137 | MS.gene011985:CDS |
| CTTCATGGGCCGTGTTAAAG+TGG | 0.489206 | 8.2:+27855151 | MS.gene011985:CDS |
| TCCCATTCTCCCTTAGGAAG+AGG | 0.491742 | 8.2:-27854056 | None:intergenic |
| AGTTGTTATTAGCTGCCAAA+AGG | 0.503930 | 8.2:+27854727 | MS.gene011985:CDS |
| CAAAGCAGGGTCCTGAGAGC+GGG | 0.507508 | 8.2:+27853979 | MS.gene011985:CDS |
| TAGCTGCCAAAAGGATAAGA+AGG | 0.510373 | 8.2:+27854736 | MS.gene011985:CDS |
| TCAAGCAGATGGCAAAGGCT+TGG | 0.510477 | 8.2:-27855322 | None:intergenic |
| AGAGCGGGCGTTTGCTCCAT+CGG | 0.517370 | 8.2:+27853994 | MS.gene011985:CDS |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.525320 | 8.2:-27855318 | None:intergenic |
| AAGGCTTGGAAGGCAGAGAA+TGG | 0.529766 | 8.2:-27855308 | None:intergenic |
| CGAGCAAGCAACAAATATGT+TGG | 0.532337 | 8.2:+27854798 | MS.gene011985:CDS |
| TTGCAATTAGGAAGCGCGGA+TGG | 0.532396 | 8.2:+27855254 | MS.gene011985:CDS |
| TTTAACACGGCCCATGAAGT+CGG | 0.535987 | 8.2:-27855147 | None:intergenic |
| TGCAATTAGGAAGCGCGGAT+GGG | 0.540465 | 8.2:+27855255 | MS.gene011985:CDS |
| TCAAAGCAGGGTCCTGAGAG+CGG | 0.548549 | 8.2:+27853978 | MS.gene011985:CDS |
| GATAGTGTCGCATCTTGCTA+TGG | 0.548725 | 8.2:+27854016 | MS.gene011985:CDS |
| CTCCTTATAAAGCAATGTAT+CGG | 0.559402 | 8.2:-27854379 | None:intergenic |
| CCAATTAAACCTCTTCCTAA+GGG | 0.565122 | 8.2:+27854047 | MS.gene011985:CDS |
| TCTTCTTCACCAGCACTGAA+GGG | 0.574228 | 8.2:+27854993 | MS.gene011985:CDS |
| CGATACATTGCTTTATAAGG+AGG | 0.577718 | 8.2:+27854380 | MS.gene011985:CDS |
| TATGCAACAAATCAAGCAGA+TGG | 0.578623 | 8.2:-27855333 | None:intergenic |
| AAGCGTAGTTCAAGAACCCA+AGG | 0.589291 | 8.2:+27853938 | MS.gene011985:CDS |
| ATCGATCAACAACAGCTACA+AGG | 0.593016 | 8.2:-27855193 | None:intergenic |
| AACCAAGGATATGACGAAGT+TGG | 0.593520 | 8.2:-27854760 | None:intergenic |
| GAAAGAGTTTCATCAAACAC+TGG | 0.593740 | 8.2:-27854972 | None:intergenic |
| ATCGGATAATCATGAGGACC+AGG | 0.594387 | 8.2:-27854361 | None:intergenic |
| ACAAATATGTTGGTAAACTG+AGG | 0.614123 | 8.2:+27854808 | MS.gene011985:CDS |
| ACAAATCAAGCAGATGGCAA+AGG | 0.618453 | 8.2:-27855327 | None:intergenic |
| AGATGGGATGAGCAGCGCAA+TGG | 0.619988 | 8.2:+27855116 | MS.gene011985:CDS |
| AGTGTCGTATATAGTGAACT+TGG | 0.625989 | 8.2:-27854943 | None:intergenic |
| TTGGAAGGCAGAGAATGGAT+AGG | 0.644326 | 8.2:-27855303 | None:intergenic |
| AGAGTTTCATCAAACACTGG+AGG | 0.644449 | 8.2:-27854969 | None:intergenic |
| TCATAGATTCCACTTTAACA+CGG | 0.648935 | 8.2:-27855160 | None:intergenic |
| CAAGATGCGACACTATCCGA+TGG | 0.648960 | 8.2:-27854010 | None:intergenic |
| GGGATGAGCAGCGCAATGGT+TGG | 0.651798 | 8.2:+27855120 | MS.gene011985:CDS |
| AGCGTAGTTCAAGAACCCAA+GGG | 0.657646 | 8.2:+27853939 | MS.gene011985:CDS |
| AATCTTGCAATTAGGAAGCG+CGG | 0.662669 | 8.2:+27855250 | MS.gene011985:CDS |
| CAATGTATCGGATAATCATG+AGG | 0.672393 | 8.2:-27854367 | None:intergenic |
| TAACACGGCCCATGAAGTCG+GGG | 0.673932 | 8.2:-27855145 | None:intergenic |
| AAGCTACCAGAATTGAGCAG+AGG | 0.699056 | 8.2:+27855056 | MS.gene011985:CDS |
| GCGTAGTTCAAGAACCCAAG+GGG | 0.711962 | 8.2:+27853940 | MS.gene011985:CDS |
| ATGTCCAAAAGCAATTCACG+TGG | 0.740624 | 8.2:-27854086 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGATAAGAATAATTTGAATT+AGG | - | chr8.2:27854300-27854319 | None:intergenic | 20.0% |
| ! | AAAAATGGAATATCAAAGCA+GGG | + | chr8.2:27853966-27853985 | MS.gene011985:CDS | 25.0% |
| ! | AAAGAGAACATAAAAAACTC+AGG | - | chr8.2:27854322-27854341 | None:intergenic | 25.0% |
| ! | AAGAGAACATAAAAAACTCA+GGG | - | chr8.2:27854321-27854340 | None:intergenic | 25.0% |
| ! | GACCTTTATACTAAAAAACA+AGG | + | chr8.2:27855088-27855107 | MS.gene011985:CDS | 25.0% |
| ! | TAAAAATGGAATATCAAAGC+AGG | + | chr8.2:27853965-27853984 | MS.gene011985:CDS | 25.0% |
| ! | TTCTACATTTCTGTTGTATT+TGG | + | chr8.2:27854414-27854433 | MS.gene011985:CDS | 25.0% |
| !! | CAACTTGATTTTTATACGTA+TGG | + | chr8.2:27854900-27854919 | MS.gene011985:intron | 25.0% |
| !!! | AGCCTTGTTTTTTAGTATAA+AGG | - | chr8.2:27855093-27855112 | None:intergenic | 25.0% |
| AAAAAACAAGGCTCTTAGAT+GGG | + | chr8.2:27855100-27855119 | MS.gene011985:CDS | 30.0% | |
| AACAAGTTGCTTAAATACGT+AGG | - | chr8.2:27854666-27854685 | None:intergenic | 30.0% | |
| ACTTACTTGCTCTACATTTA+TGG | + | chr8.2:27854567-27854586 | MS.gene011985:intron | 30.0% | |
| ATCCGATACATTGCTTTATA+AGG | + | chr8.2:27854377-27854396 | MS.gene011985:CDS | 30.0% | |
| ATTTATTGTCATTCCGATTG+TGG | + | chr8.2:27854600-27854619 | MS.gene011985:intron | 30.0% | |
| ATTTCCTATTTCATTGATGC+AGG | + | chr8.2:27854244-27854263 | MS.gene011985:intron | 30.0% | |
| CAATGACAATAAACCACAAT+CGG | - | chr8.2:27854616-27854635 | None:intergenic | 30.0% | |
| CTCCTTATAAAGCAATGTAT+CGG | - | chr8.2:27854382-27854401 | None:intergenic | 30.0% | |
| GTTTGGTTGTAATTGTATAG+CGG | + | chr8.2:27854689-27854708 | MS.gene011985:intron | 30.0% | |
| TAAAAAACAAGGCTCTTAGA+TGG | + | chr8.2:27855099-27855118 | MS.gene011985:CDS | 30.0% | |
| TCATAGATTCCACTTTAACA+CGG | - | chr8.2:27855163-27855182 | None:intergenic | 30.0% | |
| ! | ACAAATATGTTGGTAAACTG+AGG | + | chr8.2:27854808-27854827 | MS.gene011985:CDS | 30.0% |
| ! | ATCAAGTTGTGAAGACTATA+AGG | - | chr8.2:27854889-27854908 | None:intergenic | 30.0% |
| ! | TTGATTTTTATACGTATGGC+AGG | + | chr8.2:27854904-27854923 | MS.gene011985:intron | 30.0% |
| !! | ATTCCATTTTTAATCCCCTT+GGG | - | chr8.2:27853957-27853976 | None:intergenic | 30.0% |
| !! | CGTATTTAAGCAACTTGTTT+TGG | + | chr8.2:27854667-27854686 | MS.gene011985:intron | 30.0% |
| !! | TATTCCATTTTTAATCCCCT+TGG | - | chr8.2:27853958-27853977 | None:intergenic | 30.0% |
| !!! | TTAAGCAACTTGTTTTGGTT+TGG | + | chr8.2:27854672-27854691 | MS.gene011985:intron | 30.0% |
| AAATGGCCAATCTTGCAATT+AGG | + | chr8.2:27855242-27855261 | MS.gene011985:CDS | 35.0% | |
| AGAAAAATCATCTGCAACCA+AGG | - | chr8.2:27854778-27854797 | None:intergenic | 35.0% | |
| AGGATGAAATGTCGATAGAA+GGG | - | chr8.2:27854863-27854882 | None:intergenic | 35.0% | |
| AGTGTCGTATATAGTGAACT+TGG | - | chr8.2:27854946-27854965 | None:intergenic | 35.0% | |
| ATATTCACCGTCTTCGAAAA+AGG | - | chr8.2:27854477-27854496 | None:intergenic | 35.0% | |
| ATGAGAGATTCATACTTTGC+AGG | + | chr8.2:27855026-27855045 | MS.gene011985:CDS | 35.0% | |
| ATTGCCTGCATCAATGAAAT+AGG | - | chr8.2:27854251-27854270 | None:intergenic | 35.0% | |
| ATTTGAATTAGGCCAGAAAG+TGG | - | chr8.2:27854289-27854308 | None:intergenic | 35.0% | |
| CAATGTATCGGATAATCATG+AGG | - | chr8.2:27854370-27854389 | None:intergenic | 35.0% | |
| CCAATTAAACCTCTTCCTAA+GGG | + | chr8.2:27854047-27854066 | MS.gene011985:CDS | 35.0% | |
| CGATACATTGCTTTATAAGG+AGG | + | chr8.2:27854380-27854399 | MS.gene011985:CDS | 35.0% | |
| GAAAGAGTTTCATCAAACAC+TGG | - | chr8.2:27854975-27854994 | None:intergenic | 35.0% | |
| TATGCAACAAATCAAGCAGA+TGG | - | chr8.2:27855336-27855355 | None:intergenic | 35.0% | |
| TCCAATTAAACCTCTTCCTA+AGG | + | chr8.2:27854046-27854065 | MS.gene011985:CDS | 35.0% | |
| TTAATTCTTCACCCACTTTC+TGG | + | chr8.2:27854274-27854293 | MS.gene011985:intron | 35.0% | |
| TTTGAATTAGGCCAGAAAGT+GGG | - | chr8.2:27854288-27854307 | None:intergenic | 35.0% | |
| ! | AGTTGTTATTAGCTGCCAAA+AGG | + | chr8.2:27854727-27854746 | MS.gene011985:CDS | 35.0% |
| ! | TTTGACGATCTCTTTTGTGA+CGG | - | chr8.2:27854198-27854217 | None:intergenic | 35.0% |
| !! | TCAATTCTGGTAGCTTTGAT+AGG | - | chr8.2:27855052-27855071 | None:intergenic | 35.0% |
| !!! | TTCCTTACCTTTTTCGAAGA+CGG | + | chr8.2:27854467-27854486 | MS.gene011985:intron | 35.0% |
| AACCAAGGATATGACGAAGT+TGG | - | chr8.2:27854763-27854782 | None:intergenic | 40.0% | |
| AATCTTGCAATTAGGAAGCG+CGG | + | chr8.2:27855250-27855269 | MS.gene011985:CDS | 40.0% | |
| ACAAATCAAGCAGATGGCAA+AGG | - | chr8.2:27855330-27855349 | None:intergenic | 40.0% | |
| AGAGTTTCATCAAACACTGG+AGG | - | chr8.2:27854972-27854991 | None:intergenic | 40.0% | |
| ATCGATCAACAACAGCTACA+AGG | - | chr8.2:27855196-27855215 | None:intergenic | 40.0% | |
| ATGTCCAAAAGCAATTCACG+TGG | - | chr8.2:27854089-27854108 | None:intergenic | 40.0% | |
| CAGGATGAAATGTCGATAGA+AGG | - | chr8.2:27854864-27854883 | None:intergenic | 40.0% | |
| CCCTTAGGAAGAGGTTTAAT+TGG | - | chr8.2:27854050-27854069 | None:intergenic | 40.0% | |
| CGAGCAAGCAACAAATATGT+TGG | + | chr8.2:27854798-27854817 | MS.gene011985:CDS | 40.0% | |
| CGATCTCATAATGTTTCTCC+TGG | + | chr8.2:27855212-27855231 | MS.gene011985:CDS | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr8.2:27854171-27854190 | MS.gene011985:intron | 40.0% | |
| CTTCTATCGACATTTCATCC+TGG | + | chr8.2:27854862-27854881 | MS.gene011985:intron | 40.0% | |
| GAACCCAAGGGGATTAAAAA+TGG | + | chr8.2:27853951-27853970 | MS.gene011985:CDS | 40.0% | |
| GTCAAAACTCTTCAGCAATG+TGG | + | chr8.2:27854212-27854231 | MS.gene011985:intron | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr8.2:27854168-27854187 | MS.gene011985:intron | 40.0% | |
| TAGCTGCCAAAAGGATAAGA+AGG | + | chr8.2:27854736-27854755 | MS.gene011985:CDS | 40.0% | |
| TCTCACTCTCTTCAACCTTA+CGG | - | chr8.2:27854115-27854134 | None:intergenic | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | + | chr8.2:27854120-27854139 | MS.gene011985:CDS | 40.0% | |
| TTGTGAAGACTATAAGGACC+AGG | - | chr8.2:27854883-27854902 | None:intergenic | 40.0% | |
| ! | CGTATGGCAGGTCAAATTTT+TGG | + | chr8.2:27854916-27854935 | MS.gene011985:intron | 40.0% |
| ! | GCTTTTGGACATAATCCGTA+AGG | + | chr8.2:27854097-27854116 | MS.gene011985:CDS | 40.0% |
| ! | GTTGGACCTTCTTATCCTTT+TGG | - | chr8.2:27854745-27854764 | None:intergenic | 40.0% |
| ! | TCTACCACGTGAATTGCTTT+TGG | + | chr8.2:27854082-27854101 | MS.gene011985:CDS | 40.0% |
| ! | TGGTAAACTGAGGCAAGTTT+TGG | + | chr8.2:27854818-27854837 | MS.gene011985:intron | 40.0% |
| AACCTCTTCCTAAGGGAGAA+TGG | + | chr8.2:27854054-27854073 | MS.gene011985:CDS | 45.0% | |
| AAGCGTAGTTCAAGAACCCA+AGG | + | chr8.2:27853938-27853957 | MS.gene011985:CDS | 45.0% | |
| AAGCTACCAGAATTGAGCAG+AGG | + | chr8.2:27855056-27855075 | MS.gene011985:CDS | 45.0% | |
| AATGAGCCTCTGCTCAATTC+TGG | - | chr8.2:27855065-27855084 | None:intergenic | 45.0% | |
| ACCTCTTCCTAAGGGAGAAT+GGG | + | chr8.2:27854055-27854074 | MS.gene011985:CDS | 45.0% | |
| AGACTTTCCCATTCTCCCTT+AGG | - | chr8.2:27854065-27854084 | None:intergenic | 45.0% | |
| AGCGTAGTTCAAGAACCCAA+GGG | + | chr8.2:27853939-27853958 | MS.gene011985:CDS | 45.0% | |
| ATCGGATAATCATGAGGACC+AGG | - | chr8.2:27854364-27854383 | None:intergenic | 45.0% | |
| CACCGTCTTCGAAAAAGGTA+AGG | - | chr8.2:27854472-27854491 | None:intergenic | 45.0% | |
| CAGGCTAAGCATGCACATAA+AGG | - | chr8.2:27854345-27854364 | None:intergenic | 45.0% | |
| CTTTATGTGCATGCTTAGCC+TGG | + | chr8.2:27854343-27854362 | MS.gene011985:intron | 45.0% | |
| GATAGTGTCGCATCTTGCTA+TGG | + | chr8.2:27854016-27854035 | MS.gene011985:CDS | 45.0% | |
| GCGCTTCCTAATTGCAAGAT+TGG | - | chr8.2:27855251-27855270 | None:intergenic | 45.0% | |
| GTCCAACTTCGTCATATCCT+TGG | + | chr8.2:27854758-27854777 | MS.gene011985:CDS | 45.0% | |
| TGTTGTTGTCGTCTGTGCTT+CGG | + | chr8.2:27854154-27854173 | MS.gene011985:CDS | 45.0% | |
| TTGGAAGGCAGAGAATGGAT+AGG | - | chr8.2:27855306-27855325 | None:intergenic | 45.0% | |
| TTTAACACGGCCCATGAAGT+CGG | - | chr8.2:27855150-27855169 | None:intergenic | 45.0% | |
| TTTCTCCTGGAGTGCGAAAA+TGG | + | chr8.2:27855225-27855244 | MS.gene011985:CDS | 45.0% | |
| ! | TCTTCTTCACCAGCACTGAA+GGG | + | chr8.2:27854993-27855012 | MS.gene011985:CDS | 45.0% |
| ! | TTCTTCTTCACCAGCACTGA+AGG | + | chr8.2:27854992-27855011 | MS.gene011985:CDS | 45.0% |
| AAGGCTTGGAAGGCAGAGAA+TGG | - | chr8.2:27855311-27855330 | None:intergenic | 50.0% | |
| CAAGATGCGACACTATCCGA+TGG | - | chr8.2:27854013-27854032 | None:intergenic | 50.0% | |
| CTTCATGGGCCGTGTTAAAG+TGG | + | chr8.2:27855151-27855170 | MS.gene011985:CDS | 50.0% | |
| GCGTAGTTCAAGAACCCAAG+GGG | + | chr8.2:27853940-27853959 | MS.gene011985:CDS | 50.0% | |
| TCAAGCAGATGGCAAAGGCT+TGG | - | chr8.2:27855325-27855344 | None:intergenic | 50.0% | |
| TCCCATTCTCCCTTAGGAAG+AGG | - | chr8.2:27854059-27854078 | None:intergenic | 50.0% | |
| TTAACACGGCCCATGAAGTC+GGG | - | chr8.2:27855149-27855168 | None:intergenic | 50.0% | |
| ! | TGCAATTAGGAAGCGCGGAT+GGG | + | chr8.2:27855255-27855274 | MS.gene011985:CDS | 50.0% |
| ! | TTGCAATTAGGAAGCGCGGA+TGG | + | chr8.2:27855254-27855273 | MS.gene011985:CDS | 50.0% |
| !! | ATTGGCCATTTTCGCACTCC+AGG | - | chr8.2:27855233-27855252 | None:intergenic | 50.0% |
| AGATGGGATGAGCAGCGCAA+TGG | + | chr8.2:27855116-27855135 | MS.gene011985:CDS | 55.0% | |
| GCAGATGGCAAAGGCTTGGA+AGG | - | chr8.2:27855321-27855340 | None:intergenic | 55.0% | |
| TAACACGGCCCATGAAGTCG+GGG | - | chr8.2:27855148-27855167 | None:intergenic | 55.0% | |
| TCAAAGCAGGGTCCTGAGAG+CGG | + | chr8.2:27853978-27853997 | MS.gene011985:CDS | 55.0% | |
| ! | CGACGTTTTCCCTTCAGTGC+TGG | - | chr8.2:27855005-27855024 | None:intergenic | 55.0% |
| ACGACAACAACAGCACGCGC+AGG | - | chr8.2:27854146-27854165 | None:intergenic | 60.0% | |
| AGAGCGGGCGTTTGCTCCAT+CGG | + | chr8.2:27853994-27854013 | MS.gene011985:CDS | 60.0% | |
| CAAAGCAGGGTCCTGAGAGC+GGG | + | chr8.2:27853979-27853998 | MS.gene011985:CDS | 60.0% | |
| GGGATGAGCAGCGCAATGGT+TGG | + | chr8.2:27855120-27855139 | MS.gene011985:CDS | 60.0% | |
| ! | GGTTGGTGCCCCGACTTCAT+GGG | + | chr8.2:27855137-27855156 | MS.gene011985:CDS | 60.0% |
| ! | TGGTTGGTGCCCCGACTTCA+TGG | + | chr8.2:27855136-27855155 | MS.gene011985:CDS | 60.0% |
| TGGAGCAAACGCCCGCTCTC+AGG | - | chr8.2:27853993-27854012 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 27853927 | 27855358 | 27853927 | ID=MS.gene011985 |
| chr8.2 | mRNA | 27853927 | 27855358 | 27853927 | ID=MS.gene011985.t1;Parent=MS.gene011985 |
| chr8.2 | exon | 27853927 | 27854175 | 27853927 | ID=MS.gene011985.t1.exon1;Parent=MS.gene011985.t1 |
| chr8.2 | CDS | 27853927 | 27854175 | 27853927 | ID=cds.MS.gene011985.t1;Parent=MS.gene011985.t1 |
| chr8.2 | exon | 27854361 | 27854442 | 27854361 | ID=MS.gene011985.t1.exon2;Parent=MS.gene011985.t1 |
| chr8.2 | CDS | 27854361 | 27854442 | 27854361 | ID=cds.MS.gene011985.t1;Parent=MS.gene011985.t1 |
| chr8.2 | exon | 27854709 | 27854829 | 27854709 | ID=MS.gene011985.t1.exon3;Parent=MS.gene011985.t1 |
| chr8.2 | CDS | 27854709 | 27854829 | 27854709 | ID=cds.MS.gene011985.t1;Parent=MS.gene011985.t1 |
| chr8.2 | exon | 27854926 | 27855358 | 27854926 | ID=MS.gene011985.t1.exon4;Parent=MS.gene011985.t1 |
| chr8.2 | CDS | 27854926 | 27855358 | 27854926 | ID=cds.MS.gene011985.t1;Parent=MS.gene011985.t1 |
| Gene Sequence |
| Protein sequence |
