AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011986

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011986.t1 MTR_8g077620 82.166 157 23 2 1 152 1 157 1.28e-82 252
MS.gene011986.t1 MTR_8g077620 84.615 104 12 1 135 234 284 387 5.32e-56 183
MS.gene011986.t1 MTR_8g077195 73.457 162 37 3 1 156 1 162 5.54e-74 230
MS.gene011986.t1 MTR_8g077195 67.327 101 32 1 133 233 306 405 2.83e-38 137
MS.gene011986.t1 MTR_8g077675 71.166 163 38 3 1 158 1 159 6.44e-71 222
MS.gene011986.t1 MTR_8g077675 54.128 109 41 4 133 238 298 400 8.62e-22 93.2
MS.gene011986.t1 MTR_5g020580 60.366 164 57 4 1 156 1 164 1.03e-57 189
MS.gene011986.t1 MTR_5g020580 59.804 102 40 1 130 231 307 407 5.99e-34 126
MS.gene011986.t1 MTR_8g077640 65.693 137 45 1 1 137 46 180 6.57e-47 160
MS.gene011986.t1 MTR_8g077640 57.576 99 40 2 133 230 286 383 3.38e-26 105
MS.gene011986.t1 MTR_1g022370 46.354 192 74 6 1 168 1 187 2.92e-41 146
MS.gene011986.t1 MTR_1g022370 63.218 87 31 1 145 231 328 413 4.26e-30 116
MS.gene011986.t1 MTR_1g023800 53.793 145 60 4 1 140 1 143 4.02e-41 138
MS.gene011986.t1 MTR_2g007930 50.365 137 58 4 1 131 1 133 2.19e-36 133
MS.gene011986.t1 MTR_2g007930 49.485 97 44 1 142 233 324 420 1.92e-25 103
MS.gene011986.t1 MTR_1g098790 48.175 137 60 5 1 131 1 132 1.85e-32 122
MS.gene011986.t1 MTR_1g098790 42.857 119 50 3 132 233 307 424 1.35e-22 95.5
MS.gene011986.t1 MTR_8g077650 74.324 74 18 1 157 230 254 326 8.92e-30 114
MS.gene011986.t1 MTR_8g077650 50.794 126 29 5 36 152 3 104 4.51e-25 101
MS.gene011986.t1 MTR_1g088960 38.509 161 92 3 1 156 1 159 3.53e-28 110
MS.gene011986.t1 MTR_1g088960 54.023 87 37 1 147 233 312 395 6.77e-24 99.0
MS.gene011986.t1 MTR_2g020280 42.636 129 64 2 45 168 32 155 2.13e-27 108
MS.gene011986.t1 MTR_2g020280 49.425 87 41 1 147 233 303 386 7.16e-22 93.2
MS.gene011986.t1 MTR_2g076200 48.387 93 48 0 45 137 35 127 4.33e-24 99.4
MS.gene011986.t1 MTR_2g076200 53.488 86 39 1 148 233 280 364 8.89e-21 90.1
MS.gene011986.t1 MTR_2g020280 49.425 87 41 1 147 233 204 287 1.98e-22 93.6
MS.gene011986.t1 MTR_2g076210 43.299 97 55 0 40 136 25 121 6.03e-20 87.8
MS.gene011986.t1 MTR_2g076210 47.727 88 43 2 148 233 274 360 4.89e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011986.t1 AT2G18280 54.301 186 64 6 1 179 1 172 3.93e-52 174
MS.gene011986.t1 AT2G18280 60.674 89 34 1 145 233 299 386 2.57e-29 113
MS.gene011986.t1 AT2G18280 54.301 186 64 6 1 179 1 172 3.93e-52 174
MS.gene011986.t1 AT2G18280 60.674 89 34 1 145 233 299 386 2.57e-29 113
MS.gene011986.t1 AT1G25280 45.775 142 62 3 1 131 1 138 4.47e-34 127
MS.gene011986.t1 AT1G25280 46.602 103 45 1 141 233 336 438 1.67e-22 95.5
MS.gene011986.t1 AT2G47900 44.295 149 74 4 1 143 1 146 1.98e-33 125
MS.gene011986.t1 AT2G47900 54.118 85 36 1 147 231 317 398 3.15e-23 97.4
MS.gene011986.t1 AT2G47900 44.295 149 74 4 1 143 1 146 2.23e-33 124
MS.gene011986.t1 AT2G47900 54.118 85 36 1 147 231 316 397 3.22e-23 97.4
MS.gene011986.t1 AT2G47900 44.295 149 74 4 1 143 1 146 2.23e-33 124
MS.gene011986.t1 AT2G47900 54.118 85 36 1 147 231 316 397 3.22e-23 97.4
MS.gene011986.t1 AT1G47270 40.625 192 85 6 1 179 1 176 5.27e-32 120
MS.gene011986.t1 AT1G47270 44.371 151 70 5 95 231 229 379 5.73e-28 110
MS.gene011986.t1 AT1G47270 40.625 192 85 6 1 179 26 201 7.18e-32 120
MS.gene011986.t1 AT1G47270 44.371 151 70 5 95 231 254 404 6.25e-28 110
MS.gene011986.t1 AT1G47270 40.625 192 85 6 1 179 25 200 7.69e-32 120
MS.gene011986.t1 AT1G47270 44.371 151 70 5 95 231 253 403 6.37e-28 110
MS.gene011986.t1 AT1G76900 46.853 143 57 4 1 131 1 136 1.85e-31 120
MS.gene011986.t1 AT1G76900 41.748 103 45 1 146 233 346 448 1.55e-18 84.3
MS.gene011986.t1 AT1G76900 46.853 143 57 4 1 131 1 136 1.85e-31 120
MS.gene011986.t1 AT1G76900 41.748 103 45 1 146 233 346 448 1.55e-18 84.3
MS.gene011986.t1 AT1G76900 46.853 143 57 4 1 131 1 136 1.85e-31 120
MS.gene011986.t1 AT1G76900 41.748 103 45 1 146 233 346 448 1.55e-18 84.3
MS.gene011986.t1 AT1G43640 45.638 149 67 5 1 140 1 144 8.31e-31 118
MS.gene011986.t1 AT1G43640 42.593 108 45 3 141 231 313 420 2.41e-19 86.7
MS.gene011986.t1 AT1G61940 37.500 176 59 5 55 182 1 173 3.49e-26 102
MS.gene011986.t1 AT5G18680 41.892 148 73 6 99 233 143 290 3.27e-24 98.2
MS.gene011986.t1 AT5G18680 41.892 148 73 6 99 233 235 382 7.57e-24 99.0
MS.gene011986.t1 AT5G18680 50.588 85 41 1 48 131 35 119 1.24e-21 92.8
MS.gene011986.t1 AT1G25280 47.573 103 44 1 141 233 158 260 1.66e-23 95.9
MS.gene011986.t1 AT1G25280 47.573 103 44 1 141 233 158 260 1.66e-23 95.9
MS.gene011986.t1 AT3G06380 52.174 92 32 2 146 233 198 281 6.04e-23 94.7
MS.gene011986.t1 AT3G06380 46.667 105 49 2 28 131 15 113 1.44e-22 95.1
MS.gene011986.t1 AT3G06380 52.174 92 32 2 146 233 290 373 2.04e-22 94.7
MS.gene011986.t1 AT1G43640 56.410 78 33 1 64 140 1 78 3.73e-22 94.0
MS.gene011986.t1 AT1G43640 42.593 108 45 3 141 231 247 354 1.51e-19 86.7
MS.gene011986.t1 AT1G53320 49.412 85 43 0 52 136 44 128 2.09e-21 92.0
MS.gene011986.t1 AT1G53320 53.488 86 39 1 148 233 288 372 4.73e-21 90.9
MS.gene011986.t1 AT1G61940 28.962 183 73 4 55 183 1 180 3.68e-17 78.2

Find 65 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACCTGCTTCAATGAAAT+AGG 0.248006 8.2:-27859766 None:intergenic
GTTCTACCGGAGAAACATTA+TGG 0.250734 8.2:-27860096 None:intergenic
ATCTGATACAATGCTTTATT+AGG 0.257864 8.2:+27859891 MS.gene011986:CDS
TCTACCACCTGAATTGCTTT+TGG 0.262620 8.2:+27859600 MS.gene011986:CDS
CCCTGTTGAATGGGTTCAAT+TGG 0.319795 8.2:-27859565 None:intergenic
ATTATATCCAAAAGCAATTC+AGG 0.336455 8.2:-27859607 None:intergenic
GTGTTGGTGTTTAGACTTCA+TGG 0.351367 8.2:+27860012 MS.gene011986:CDS
TGCCCATTGTCCCTGTTGAA+TGG 0.366770 8.2:-27859575 None:intergenic
TCCAATTGAACCCATTCAAC+AGG 0.387257 8.2:+27859564 MS.gene011986:CDS
GCCCATTGTCCCTGTTGAAT+GGG 0.398731 8.2:-27859574 None:intergenic
GAAAGGGTAGTCTTGCAGTT+TGG 0.405279 8.2:+27860121 MS.gene011986:CDS
TTTCACTCTCTTCAACCTTA+CGG 0.448212 8.2:-27859630 None:intergenic
AAAATCAGAAATGTAGTTTG+AGG 0.456884 8.2:-27860234 None:intergenic
ATTTCCTATTTCATTGAAGC+AGG 0.465510 8.2:+27859762 MS.gene011986:CDS
ACCCATTCAACAGGGACAAT+GGG 0.467610 8.2:+27859573 MS.gene011986:CDS
TTCTACCGGAGAAACATTAT+GGG 0.481885 8.2:-27860095 None:intergenic
TCAAGCAGATGGCGAAGGCT+TGG 0.484081 8.2:-27860198 None:intergenic
TCAAAAGCAAGGATTGCATA+AGG 0.485337 8.2:+27859975 MS.gene011986:CDS
AAAGACAACAACTGCACGGG+CGG 0.494992 8.2:-27859662 None:intergenic
GTCTTGCAGTTTGGAAAGAT+CGG 0.499553 8.2:+27860130 MS.gene011986:CDS
AAATCAGAAATGTAGTTTGA+GGG 0.500833 8.2:-27860233 None:intergenic
TCCATCCCATAATGTTTCTC+CGG 0.504105 8.2:+27860090 MS.gene011986:CDS
CAAAAGCAAGGATTGCATAA+GGG 0.506662 8.2:+27859976 MS.gene011986:CDS
AAAAGAATGTCTAAGCTACT+AGG 0.507813 8.2:+27859920 MS.gene011986:CDS
TTTCTCCGGTAGAACGAGAA+AGG 0.508143 8.2:+27860104 MS.gene011986:CDS
GACAAAGTCCCATGTTGCAC+TGG 0.508206 8.2:+27859534 MS.gene011986:CDS
TATCAGATAATCACTAGGAC+CGG 0.509455 8.2:-27859876 None:intergenic
TTGAAGAGAGTGAAACATCT+TGG 0.524893 8.2:+27859638 MS.gene011986:CDS
ACAAGGGTTGGATCGAGCCT+TGG 0.530280 8.2:-27859949 None:intergenic
ACCCTTGTTGCTCAAAAGCA+AGG 0.534064 8.2:+27859964 MS.gene011986:CDS
AAGACAACAACTGCACGGGC+GGG 0.537687 8.2:-27859661 None:intergenic
TGATACAATGCTTTATTAGG+AGG 0.541855 8.2:+27859894 MS.gene011986:CDS
TGTCCGACAGAGCCTATGCT+TGG 0.543813 8.2:-27859515 None:intergenic
GCAGATGGCGAAGGCTTGGA+AGG 0.544242 8.2:-27860194 None:intergenic
AACCCATTCAACAGGGACAA+TGG 0.545108 8.2:+27859572 MS.gene011986:CDS
ACTACCCTTTCTCGTTCTAC+CGG 0.546215 8.2:-27860109 None:intergenic
TGTTGGTGTTTAGACTTCAT+GGG 0.546310 8.2:+27860013 MS.gene011986:CDS
TCTCATTTGCGTCAAGCAGA+TGG 0.554158 8.2:-27860209 None:intergenic
AGCATAGTCTGCAAACTCAA+GGG 0.565579 8.2:+27859451 MS.gene011986:CDS
ACAAAAGACAACAACTGCAC+GGG 0.567285 8.2:-27859665 None:intergenic
TTCTCCGGTAGAACGAGAAA+GGG 0.571393 8.2:+27860105 MS.gene011986:CDS
TTGCGTCAAGCAGATGGCGA+AGG 0.575633 8.2:-27860203 None:intergenic
CACAAAAGACAACAACTGCA+CGG 0.575702 8.2:-27859666 None:intergenic
CGGAAAAGACATATTCGTCA+TGG 0.577291 8.2:+27860150 MS.gene011986:CDS
GTGCTTCGGTATGTAAATCG+TGG 0.582590 8.2:+27859686 MS.gene011986:CDS
AAGCATAGTCTGCAAACTCA+AGG 0.583651 8.2:+27859450 MS.gene011986:CDS
AGACCAAGCATAGGCTCTGT+CGG 0.586519 8.2:+27859512 MS.gene011986:CDS
CATTGTATCAGATAATCACT+AGG 0.587439 8.2:-27859881 None:intergenic
GAGTTACATCCAGTGCAACA+TGG 0.593872 8.2:-27859543 None:intergenic
CTTGACAATCTCTAACGTGA+TGG 0.598262 8.2:-27859713 None:intergenic
ACCGGAGAAACATTATGGGA+TGG 0.601201 8.2:-27860091 None:intergenic
TAGAGATTGTCAAGACTCCT+CGG 0.602896 8.2:+27859722 MS.gene011986:CDS
AGTTACATCCAGTGCAACAT+GGG 0.608162 8.2:-27859542 None:intergenic
AAGGCTTGGAAGGCAGAGAG+TGG 0.612756 8.2:-27860184 None:intergenic
ATCAGATAATCACTAGGACC+GGG 0.621787 8.2:-27859875 None:intergenic
GCATAGTCTGCAAACTCAAG+GGG 0.643365 8.2:+27859452 MS.gene011986:CDS
GTCAAGACTCCTCGGCAATG+TGG 0.644036 8.2:+27859730 MS.gene011986:CDS
AGGCTTGGAAGGCAGAGAGT+GGG 0.650720 8.2:-27860183 None:intergenic
CCAATTGAACCCATTCAACA+GGG 0.672357 8.2:+27859565 MS.gene011986:CDS
CTTCGGTATGTAAATCGTGG+AGG 0.672621 8.2:+27859689 MS.gene011986:CDS
AGAGTGCTGAGACCAAGCAT+AGG 0.696911 8.2:+27859503 MS.gene011986:CDS
AAGCTACTAGGACTGAGCCA+AGG 0.697590 8.2:+27859932 MS.gene011986:CDS
ATATCCAAAAGCAATTCAGG+TGG 0.697831 8.2:-27859604 None:intergenic
GTAAGCGTTCCACATTGCCG+AGG 0.698695 8.2:-27859739 None:intergenic
GGGATGAGCAGCGAAAGTGT+TGG 0.703904 8.2:+27859996 MS.gene011986:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAATTATTTGTATTGCT+CGG + chr8.2:27859816-27859835 MS.gene011986:intron 20.0%
! ATTATATCCAAAAGCAATTC+AGG - chr8.2:27859610-27859629 None:intergenic 25.0%
!! ATCTGATACAATGCTTTATT+AGG + chr8.2:27859891-27859910 MS.gene011986:CDS 25.0%
AAAAGAATGTCTAAGCTACT+AGG + chr8.2:27859920-27859939 MS.gene011986:CDS 30.0%
ATTACCTGCTTCAATGAAAT+AGG - chr8.2:27859769-27859788 None:intergenic 30.0%
ATTTCCTATTTCATTGAAGC+AGG + chr8.2:27859762-27859781 MS.gene011986:CDS 30.0%
ATTTGTATCAAACCAGAAAG+TGG - chr8.2:27859803-27859822 None:intergenic 30.0%
CATTGTATCAGATAATCACT+AGG - chr8.2:27859884-27859903 None:intergenic 30.0%
TTTGTATCAAACCAGAAAGT+GGG - chr8.2:27859802-27859821 None:intergenic 30.0%
! TGATACAATGCTTTATTAGG+AGG + chr8.2:27859894-27859913 MS.gene011986:CDS 30.0%
AAACTCAAGGGGATGAAAAA+TGG + chr8.2:27859463-27859482 MS.gene011986:CDS 35.0%
ATATCCAAAAGCAATTCAGG+TGG - chr8.2:27859607-27859626 None:intergenic 35.0%
CAAAAGCAAGGATTGCATAA+GGG + chr8.2:27859976-27859995 MS.gene011986:CDS 35.0%
TATCAGATAATCACTAGGAC+CGG - chr8.2:27859879-27859898 None:intergenic 35.0%
TCAAAAGCAAGGATTGCATA+AGG + chr8.2:27859975-27859994 MS.gene011986:CDS 35.0%
TTCTACCGGAGAAACATTAT+GGG - chr8.2:27860098-27860117 None:intergenic 35.0%
TTGAAGAGAGTGAAACATCT+TGG + chr8.2:27859638-27859657 MS.gene011986:CDS 35.0%
TTTCACTCTCTTCAACCTTA+CGG - chr8.2:27859633-27859652 None:intergenic 35.0%
! AGTTGTTGTCTTTTGTGCTT+CGG + chr8.2:27859672-27859691 MS.gene011986:CDS 35.0%
! GCTTTTGGATATAATCCGTA+AGG + chr8.2:27859615-27859634 MS.gene011986:CDS 35.0%
! TGTTGGTGTTTAGACTTCAT+GGG + chr8.2:27860013-27860032 MS.gene011986:CDS 35.0%
AAGCATAGTCTGCAAACTCA+AGG + chr8.2:27859450-27859469 MS.gene011986:CDS 40.0%
ACAAAAGACAACAACTGCAC+GGG - chr8.2:27859668-27859687 None:intergenic 40.0%
AGCATAGTCTGCAAACTCAA+GGG + chr8.2:27859451-27859470 MS.gene011986:CDS 40.0%
AGTTACATCCAGTGCAACAT+GGG - chr8.2:27859545-27859564 None:intergenic 40.0%
ATCAGATAATCACTAGGACC+GGG - chr8.2:27859878-27859897 None:intergenic 40.0%
CACAAAAGACAACAACTGCA+CGG - chr8.2:27859669-27859688 None:intergenic 40.0%
CCAATTGAACCCATTCAACA+GGG + chr8.2:27859565-27859584 MS.gene011986:CDS 40.0%
CGGAAAAGACATATTCGTCA+TGG + chr8.2:27860150-27860169 MS.gene011986:CDS 40.0%
CTTGACAATCTCTAACGTGA+TGG - chr8.2:27859716-27859735 None:intergenic 40.0%
GTCTTGCAGTTTGGAAAGAT+CGG + chr8.2:27860130-27860149 MS.gene011986:CDS 40.0%
GTTCTACCGGAGAAACATTA+TGG - chr8.2:27860099-27860118 None:intergenic 40.0%
TAGAGATTGTCAAGACTCCT+CGG + chr8.2:27859722-27859741 MS.gene011986:CDS 40.0%
TCCAATTGAACCCATTCAAC+AGG + chr8.2:27859564-27859583 MS.gene011986:CDS 40.0%
TCCATCCCATAATGTTTCTC+CGG + chr8.2:27860090-27860109 MS.gene011986:CDS 40.0%
TGAATTCTTCTCCCACTTTC+TGG + chr8.2:27859788-27859807 MS.gene011986:intron 40.0%
! AAGGGGATGAAAAATGGACT+AGG + chr8.2:27859469-27859488 MS.gene011986:CDS 40.0%
! GTGTTGGTGTTTAGACTTCA+TGG + chr8.2:27860012-27860031 MS.gene011986:CDS 40.0%
! TCTACCACCTGAATTGCTTT+TGG + chr8.2:27859600-27859619 MS.gene011986:CDS 40.0%
!! ATCCTTGCTTTTGAGCAACA+AGG - chr8.2:27859969-27859988 None:intergenic 40.0%
!! TCCTTGCTTTTGAGCAACAA+GGG - chr8.2:27859968-27859987 None:intergenic 40.0%
AACCCATTCAACAGGGACAA+TGG + chr8.2:27859572-27859591 MS.gene011986:CDS 45.0%
ACCCATTCAACAGGGACAAT+GGG + chr8.2:27859573-27859592 MS.gene011986:CDS 45.0%
ACCCTTGTTGCTCAAAAGCA+AGG + chr8.2:27859964-27859983 MS.gene011986:CDS 45.0%
ACCGGAGAAACATTATGGGA+TGG - chr8.2:27860094-27860113 None:intergenic 45.0%
ACTACCCTTTCTCGTTCTAC+CGG - chr8.2:27860112-27860131 None:intergenic 45.0%
CTTCGGTATGTAAATCGTGG+AGG + chr8.2:27859689-27859708 MS.gene011986:CDS 45.0%
GAGTTACATCCAGTGCAACA+TGG - chr8.2:27859546-27859565 None:intergenic 45.0%
GCATAGTCTGCAAACTCAAG+GGG + chr8.2:27859452-27859471 MS.gene011986:CDS 45.0%
GTGCTTCGGTATGTAAATCG+TGG + chr8.2:27859686-27859705 MS.gene011986:CDS 45.0%
TCTCATTTGCGTCAAGCAGA+TGG - chr8.2:27860212-27860231 None:intergenic 45.0%
TTCTCCGGTAGAACGAGAAA+GGG + chr8.2:27860105-27860124 MS.gene011986:CDS 45.0%
TTTCTCCGGTAGAACGAGAA+AGG + chr8.2:27860104-27860123 MS.gene011986:CDS 45.0%
! CCCTGTTGAATGGGTTCAAT+TGG - chr8.2:27859568-27859587 None:intergenic 45.0%
! GAAAGGGTAGTCTTGCAGTT+TGG + chr8.2:27860121-27860140 MS.gene011986:CDS 45.0%
! TGCTTTTGAGCAACAAGGGT+TGG - chr8.2:27859964-27859983 None:intergenic 45.0%
AAAGACAACAACTGCACGGG+CGG - chr8.2:27859665-27859684 None:intergenic 50.0%
AAGCTACTAGGACTGAGCCA+AGG + chr8.2:27859932-27859951 MS.gene011986:CDS 50.0%
AGACCAAGCATAGGCTCTGT+CGG + chr8.2:27859512-27859531 MS.gene011986:CDS 50.0%
GACAAAGTCCCATGTTGCAC+TGG + chr8.2:27859534-27859553 MS.gene011986:CDS 50.0%
GCCCATTGTCCCTGTTGAAT+GGG - chr8.2:27859577-27859596 None:intergenic 50.0%
TGCCCATTGTCCCTGTTGAA+TGG - chr8.2:27859578-27859597 None:intergenic 50.0%
! CTTTATGCGTGTGACTAGCC+CGG + chr8.2:27859857-27859876 MS.gene011986:intron 50.0%
!! AGAGTGCTGAGACCAAGCAT+AGG + chr8.2:27859503-27859522 MS.gene011986:CDS 50.0%
AAGACAACAACTGCACGGGC+GGG - chr8.2:27859664-27859683 None:intergenic 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG - chr8.2:27860187-27860206 None:intergenic 55.0%
ACAAGGGTTGGATCGAGCCT+TGG - chr8.2:27859952-27859971 None:intergenic 55.0%
AGGCTTGGAAGGCAGAGAGT+GGG - chr8.2:27860186-27860205 None:intergenic 55.0%
GTAAGCGTTCCACATTGCCG+AGG - chr8.2:27859742-27859761 None:intergenic 55.0%
GTCAAGACTCCTCGGCAATG+TGG + chr8.2:27859730-27859749 MS.gene011986:CDS 55.0%
TCAAGCAGATGGCGAAGGCT+TGG - chr8.2:27860201-27860220 None:intergenic 55.0%
TGTCCGACAGAGCCTATGCT+TGG - chr8.2:27859518-27859537 None:intergenic 55.0%
TTGCGTCAAGCAGATGGCGA+AGG - chr8.2:27860206-27860225 None:intergenic 55.0%
! GGGATGAGCAGCGAAAGTGT+TGG + chr8.2:27859996-27860015 MS.gene011986:CDS 55.0%
!! CGGGCTAGTCACACGCATAA+AGG - chr8.2:27859859-27859878 None:intergenic 55.0%
GCAGATGGCGAAGGCTTGGA+AGG - chr8.2:27860197-27860216 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 27859439 27860252 27859439 ID=MS.gene011986
chr8.2 mRNA 27859439 27860252 27859439 ID=MS.gene011986.t1;Parent=MS.gene011986
chr8.2 exon 27859439 27859783 27859439 ID=MS.gene011986.t1.exon1;Parent=MS.gene011986.t1
chr8.2 CDS 27859439 27859783 27859439 ID=cds.MS.gene011986.t1;Parent=MS.gene011986.t1
chr8.2 exon 27859875 27860252 27859875 ID=MS.gene011986.t1.exon2;Parent=MS.gene011986.t1
chr8.2 CDS 27859875 27860252 27859875 ID=cds.MS.gene011986.t1;Parent=MS.gene011986.t1
Gene Sequence

>MS.gene011986

ATGTCATTGAAAAGCATAGTCTGCAAACTCAAGGGGATGAAAAATGGACTAGGTAGCATATCAAAGAGTGCTGAGACCAAGCATAGGCTCTGTCGGACAAAGTCCCATGTTGCACTGGATGTAACTCCAATTGAACCCATTCAACAGGGACAATGGGCAAGTCTACCACCTGAATTGCTTTTGGATATAATCCGTAAGGTTGAAGAGAGTGAAACATCTTGGCCCGCCCGTGCAGTTGTTGTCTTTTGTGCTTCGGTATGTAAATCGTGGAGGTCCATCACGTTAGAGATTGTCAAGACTCCTCGGCAATGTGGAACGCTTACATTTCCTATTTCATTGAAGCAGGTAATGAATTCTTCTCCCACTTTCTGGTTTGATACAAATTATTTGTATTGCTCGGTTTCTTATGCTCTCTTTCCTTTATGCGTGTGACTAGCCCGGTCCTAGTGATTATCTGATACAATGCTTTATTAGGAGGAACAAAAGAATGTCTAAGCTACTAGGACTGAGCCAAGGCTCGATCCAACCCTTGTTGCTCAAAAGCAAGGATTGCATAAGGGATGAGCAGCGAAAGTGTTGGTGTTTAGACTTCATGGGTCGTGAAATAGCGTGCTCTTCAAAGAACTTTGAACTTGTAGAAGATGTTGTTGATCCATCCCATAATGTTTCTCCGGTAGAACGAGAAAGGGTAGTCTTGCAGTTTGGAAAGATCGGAAAAGACATATTCGTCATGGACTACTCTTACCCACTCTCTGCCTTCCAAGCCTTCGCCATCTGCTTGACGCAAATGAGAGCCCTCAAACTACATTTCTGA
Protein sequence

>MS.gene011986.t1

MSLKSIVCKLKGMKNGLGSISKSAETKHRLCRTKSHVALDVTPIEPIQQGQWASLPPELLLDIIRKVEESETSWPARAVVVFCASVCKSWRSITLEIVKTPRQCGTLTFPISLKQPGPSDYLIQCFIRRNKRMSKLLGLSQGSIQPLLLKSKDCIRDEQRKCWCLDFMGREIACSSKNFELVEDVVDPSHNVSPVERERVVLQFGKIGKDIFVMDYSYPLSAFQAFAICLTQMRALKLHF