Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011989.t1 | XP_024628855.1 | 67.6 | 262 | 64 | 2 | 1 | 241 | 1 | 262 | 1.00E-90 | 343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011989.t1 | Q8GVE5 | 54.6 | 205 | 75 | 5 | 1 | 194 | 1 | 198 | 6.7e-51 | 202.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011989.t1 | G7LES5 | 63.2 | 280 | 64 | 3 | 1 | 241 | 46 | 325 | 1.7e-87 | 332.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene011989.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011989.t1 | MTR_8g077640 | 63.214 | 280 | 64 | 3 | 1 | 241 | 46 | 325 | 2.87e-107 | 315 |
| MS.gene011989.t1 | MTR_8g077195 | 70.588 | 204 | 51 | 3 | 1 | 195 | 1 | 204 | 1.71e-94 | 283 |
| MS.gene011989.t1 | MTR_8g077675 | 68.687 | 198 | 57 | 2 | 1 | 195 | 1 | 196 | 2.03e-90 | 273 |
| MS.gene011989.t1 | MTR_8g077620 | 64.000 | 200 | 66 | 3 | 1 | 195 | 1 | 199 | 1.08e-80 | 247 |
| MS.gene011989.t1 | MTR_5g020580 | 57.767 | 206 | 76 | 4 | 1 | 195 | 1 | 206 | 4.27e-77 | 239 |
| MS.gene011989.t1 | MTR_1g022370 | 52.252 | 222 | 79 | 5 | 1 | 195 | 1 | 222 | 6.19e-64 | 205 |
| MS.gene011989.t1 | MTR_2g020280 | 42.324 | 241 | 129 | 4 | 13 | 245 | 4 | 242 | 1.02e-53 | 178 |
| MS.gene011989.t1 | MTR_1g098790 | 43.981 | 216 | 107 | 4 | 1 | 204 | 1 | 214 | 2.35e-51 | 173 |
| MS.gene011989.t1 | MTR_2g007930 | 42.326 | 215 | 113 | 4 | 1 | 204 | 1 | 215 | 3.34e-50 | 170 |
| MS.gene011989.t1 | MTR_2g076200 | 52.632 | 152 | 66 | 2 | 50 | 195 | 42 | 193 | 1.58e-47 | 161 |
| MS.gene011989.t1 | MTR_1g088960 | 40.000 | 215 | 115 | 4 | 1 | 205 | 1 | 211 | 5.35e-47 | 160 |
| MS.gene011989.t1 | MTR_1g023800 | 54.930 | 142 | 58 | 3 | 1 | 138 | 1 | 140 | 1.65e-42 | 142 |
| MS.gene011989.t1 | MTR_2g076210 | 45.963 | 161 | 81 | 2 | 38 | 192 | 25 | 185 | 5.31e-39 | 139 |
| MS.gene011989.t1 | MTR_8g077650 | 37.241 | 290 | 73 | 10 | 34 | 239 | 3 | 267 | 2.64e-38 | 136 |
| MS.gene011989.t1 | MTR_2g020280 | 40.559 | 143 | 77 | 3 | 111 | 245 | 1 | 143 | 1.37e-23 | 96.7 |
| MS.gene011989.t1 | MTR_0210s0010 | 38.000 | 100 | 55 | 3 | 93 | 189 | 9 | 104 | 8.16e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011989.t1 | AT2G18280 | 54.634 | 205 | 75 | 5 | 1 | 194 | 1 | 198 | 2.52e-64 | 206 |
| MS.gene011989.t1 | AT2G18280 | 54.634 | 205 | 75 | 5 | 1 | 194 | 1 | 198 | 2.52e-64 | 206 |
| MS.gene011989.t1 | AT1G47270 | 54.598 | 174 | 72 | 2 | 43 | 209 | 37 | 210 | 7.39e-58 | 189 |
| MS.gene011989.t1 | AT1G47270 | 54.598 | 174 | 72 | 2 | 43 | 209 | 61 | 234 | 1.42e-57 | 189 |
| MS.gene011989.t1 | AT1G47270 | 54.598 | 174 | 72 | 2 | 43 | 209 | 62 | 235 | 1.43e-57 | 189 |
| MS.gene011989.t1 | AT2G47900 | 45.854 | 205 | 102 | 4 | 1 | 196 | 1 | 205 | 1.86e-54 | 180 |
| MS.gene011989.t1 | AT2G47900 | 45.854 | 205 | 102 | 4 | 1 | 196 | 1 | 205 | 1.86e-54 | 180 |
| MS.gene011989.t1 | AT2G47900 | 45.631 | 206 | 102 | 4 | 1 | 196 | 1 | 206 | 2.46e-54 | 180 |
| MS.gene011989.t1 | AT1G76900 | 52.830 | 159 | 68 | 2 | 45 | 196 | 52 | 210 | 4.16e-49 | 167 |
| MS.gene011989.t1 | AT1G76900 | 52.830 | 159 | 68 | 2 | 45 | 196 | 52 | 210 | 4.16e-49 | 167 |
| MS.gene011989.t1 | AT1G76900 | 52.830 | 159 | 68 | 2 | 45 | 196 | 52 | 210 | 4.16e-49 | 167 |
| MS.gene011989.t1 | AT1G53320 | 46.561 | 189 | 90 | 4 | 17 | 195 | 8 | 195 | 1.99e-45 | 156 |
| MS.gene011989.t1 | AT1G25280 | 46.277 | 188 | 91 | 4 | 15 | 195 | 27 | 211 | 2.13e-44 | 155 |
| MS.gene011989.t1 | AT1G43640 | 39.904 | 208 | 113 | 5 | 1 | 196 | 1 | 208 | 5.41e-43 | 151 |
| MS.gene011989.t1 | AT3G06380 | 48.667 | 150 | 70 | 3 | 50 | 192 | 33 | 182 | 3.02e-39 | 140 |
| MS.gene011989.t1 | AT5G18680 | 46.358 | 151 | 74 | 3 | 49 | 192 | 38 | 188 | 1.16e-36 | 133 |
| MS.gene011989.t1 | AT1G43640 | 45.775 | 142 | 70 | 2 | 62 | 196 | 1 | 142 | 5.17e-36 | 131 |
| MS.gene011989.t1 | AT1G61940 | 50.000 | 86 | 43 | 0 | 53 | 138 | 1 | 86 | 3.16e-22 | 92.8 |
| MS.gene011989.t1 | AT5G18680 | 46.316 | 95 | 45 | 2 | 104 | 192 | 2 | 96 | 6.35e-18 | 81.6 |
| MS.gene011989.t1 | AT3G06380 | 46.512 | 86 | 40 | 2 | 113 | 192 | 5 | 90 | 1.21e-17 | 80.5 |
| MS.gene011989.t1 | AT1G61940 | 50.820 | 61 | 30 | 0 | 53 | 113 | 1 | 61 | 7.74e-13 | 66.6 |
Find 50 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCTGCTTCAATGAAAT+AGG | 0.231585 | 8.2:-27872267 | None:intergenic |
| CATGGCTTTGCTTTATTAAG+AGG | 0.309230 | 8.2:+27872396 | MS.gene011989:CDS |
| TGGTTGGGGCGCTGACTTCA+TGG | 0.327338 | 8.2:+27873091 | MS.gene011989:CDS |
| TTGAAGAGAGTGAGAGATAT+TGG | 0.344771 | 8.2:+27872139 | MS.gene011989:CDS |
| TCTACCACAAGAATTGCTTT+TGG | 0.379872 | 8.2:+27872101 | MS.gene011989:CDS |
| CCCTGTCGAATAGGTTCAAT+TGG | 0.384099 | 8.2:-27872066 | None:intergenic |
| CCATGGATAAGCACGGGGAC+CGG | 0.410088 | 8.2:-27872378 | None:intergenic |
| GGATGAGCAACACAATGGTT+GGG | 0.438423 | 8.2:+27873076 | MS.gene011989:CDS |
| GCCCATTGTCCCTGTCGAAT+AGG | 0.441616 | 8.2:-27872075 | None:intergenic |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.2:+27872187 | MS.gene011989:CDS |
| ACCTATTCGACAGGGACAAT+GGG | 0.460081 | 8.2:+27872074 | MS.gene011989:CDS |
| CATGGATAAGCACGGGGACC+GGG | 0.463334 | 8.2:-27872377 | None:intergenic |
| ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.2:+27872263 | MS.gene011989:CDS |
| TCCAATTGAACCTATTCGAC+AGG | 0.466852 | 8.2:+27872065 | MS.gene011989:CDS |
| GTCAAACTCACATCTTGCTC+TGG | 0.476106 | 8.2:+27872035 | MS.gene011989:CDS |
| AAGCATGGTCGGAGAAATCA+AGG | 0.483624 | 8.2:+27871957 | MS.gene011989:CDS |
| CCGGTCCCCGTGCTTATCCA+TGG | 0.486467 | 8.2:+27872378 | MS.gene011989:CDS |
| GGTTGGGGCGCTGACTTCAT+GGG | 0.486960 | 8.2:+27873092 | MS.gene011989:CDS |
| GGGATGAGCAACACAATGGT+TGG | 0.490209 | 8.2:+27873075 | MS.gene011989:CDS |
| TACATTGCATCAAATACATC+AGG | 0.496649 | 8.2:-27872439 | None:intergenic |
| AGTTGTTATTAGCCGCGAAA+AGG | 0.500183 | 8.2:+27872742 | MS.gene011989:CDS |
| CACAGTGGAAACCTCTAAAA+CGG | 0.506505 | 8.2:-27873115 | None:intergenic |
| GCAAAGCCATGGATAAGCAC+GGG | 0.532440 | 8.2:-27872384 | None:intergenic |
| GGTCAAGGATATGACGAAGT+TGG | 0.533662 | 8.2:-27872775 | None:intergenic |
| AACCTATTCGACAGGGACAA+TGG | 0.535821 | 8.2:+27872073 | MS.gene011989:CDS |
| AATGAGACTTGGCTCAGTGC+TGG | 0.542748 | 8.2:-27873017 | None:intergenic |
| AACTTCGTCATATCCTTGAC+CGG | 0.561301 | 8.2:+27872777 | MS.gene011989:CDS |
| AAAGTTTCATCAAATACAGA+AGG | 0.566100 | 8.2:-27872984 | None:intergenic |
| TAAAGGTCTCAAATGAGACT+TGG | 0.571910 | 8.2:-27873028 | None:intergenic |
| GATGAGCAACACAATGGTTG+GGG | 0.586136 | 8.2:+27873077 | MS.gene011989:CDS |
| AAGACAACAGCAGAACGCGC+AGG | 0.588296 | 8.2:-27872162 | None:intergenic |
| AGCAAAGCCATGGATAAGCA+CGG | 0.591840 | 8.2:-27872385 | None:intergenic |
| CTCTTAATAAAGCAAAGCCA+TGG | 0.593697 | 8.2:-27872395 | None:intergenic |
| ATGGCATTGAAAAGCATGGT+CGG | 0.597357 | 8.2:+27871946 | MS.gene011989:CDS |
| AATGTCGTATATAGTAAACT+TGG | 0.599300 | 8.2:-27872958 | None:intergenic |
| ATCAAGACTCTTCCGCAATG+TGG | 0.608567 | 8.2:+27872231 | MS.gene011989:CDS |
| ACTTGGCTCAGTGCTGGTGA+AGG | 0.615559 | 8.2:-27873011 | None:intergenic |
| TCTCACTCTCTTCAACCCTA+CGG | 0.618635 | 8.2:-27872131 | None:intergenic |
| AAACATGGCATTGAAAAGCA+TGG | 0.626528 | 8.2:+27871942 | None:intergenic |
| ACAAATATGTTTGTAAACTG+CGG | 0.630628 | 8.2:+27872823 | MS.gene011989:CDS |
| TAGCCGCGAAAAGGATAAGA+CGG | 0.633325 | 8.2:+27872751 | MS.gene011989:CDS |
| ATGTCCAAAAGCAATTCTTG+TGG | 0.637104 | 8.2:-27872105 | None:intergenic |
| CCAATTGAACCTATTCGACA+GGG | 0.652941 | 8.2:+27872066 | MS.gene011989:CDS |
| GCATGGTCGGAGAAATCAAG+GGG | 0.659382 | 8.2:+27871959 | MS.gene011989:CDS |
| AGCATGGTCGGAGAAATCAA+GGG | 0.684102 | 8.2:+27871958 | MS.gene011989:CDS |
| CAAAGCCATGGATAAGCACG+GGG | 0.695719 | 8.2:-27872383 | None:intergenic |
| ATATGGGATGAGCAACACAA+TGG | 0.702664 | 8.2:+27873071 | MS.gene011989:CDS |
| AAGGTCAAAGTTTCTCACAG+TGG | 0.704452 | 8.2:-27873130 | None:intergenic |
| CTTCGGTATGTAAATCATGG+AGG | 0.716243 | 8.2:+27872190 | MS.gene011989:CDS |
| AATGTGATCATTCCACATTG+CGG | 0.763720 | 8.2:-27872243 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTGATTTTTATAGATA+TGG | + | chr8.2:27872915-27872934 | MS.gene011989:intron | 15.0% |
| !! | AAATTACATGTAAGAGAAAT+AGG | - | chr8.2:27872654-27872673 | None:intergenic | 20.0% |
| !! | TCTATAAAAATCAAATTGTG+AGG | - | chr8.2:27872913-27872932 | None:intergenic | 20.0% |
| !! | TTAAAAATGGAATATCAAAG+CGG | + | chr8.2:27871983-27872002 | MS.gene011989:CDS | 20.0% |
| !!! | ATATTCAATGTCTTTGAAAA+AGG | - | chr8.2:27872492-27872511 | None:intergenic | 20.0% |
| !!! | TATTCAATGTCTTTGAAAAA+GGG | - | chr8.2:27872491-27872510 | None:intergenic | 20.0% |
| ! | AAAGTTTCATCAAATACAGA+AGG | - | chr8.2:27872987-27873006 | None:intergenic | 25.0% |
| ! | AAGAGAACATAAAAATCATG+AGG | - | chr8.2:27872337-27872356 | None:intergenic | 25.0% |
| ! | AATGTCGTATATAGTAAACT+TGG | - | chr8.2:27872961-27872980 | None:intergenic | 25.0% |
| ! | ACAAATATGTTTGTAAACTG+CGG | + | chr8.2:27872823-27872842 | MS.gene011989:CDS | 25.0% |
| ! | AGAGAACATAAAAATCATGA+GGG | - | chr8.2:27872336-27872355 | None:intergenic | 25.0% |
| ! | ATCAAATTGTGAGGATTATA+TGG | - | chr8.2:27872904-27872923 | None:intergenic | 25.0% |
| ! | CAAAAACAAGACTCTTATAT+GGG | + | chr8.2:27873055-27873074 | MS.gene011989:CDS | 25.0% |
| ! | TAAAAATGGAATATCAAAGC+GGG | + | chr8.2:27871984-27872003 | MS.gene011989:CDS | 25.0% |
| ! | TCAAAAACAAGACTCTTATA+TGG | + | chr8.2:27873054-27873073 | MS.gene011989:CDS | 25.0% |
| ! | TCAAATTGTGAGGATTATAT+GGG | - | chr8.2:27872903-27872922 | None:intergenic | 25.0% |
| !! | TTGATTTTTATAGATATGGC+AGG | + | chr8.2:27872919-27872938 | MS.gene011989:intron | 25.0% |
| !!! | AGTCTTGTTTTTGAGTATAA+AGG | - | chr8.2:27873048-27873067 | None:intergenic | 25.0% |
| AAAAATGGAATATCAAAGCG+GGG | + | chr8.2:27871985-27872004 | MS.gene011989:CDS | 30.0% | |
| AAATTGTGAGGATTATATGG+GGG | - | chr8.2:27872901-27872920 | None:intergenic | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | - | chr8.2:27872270-27872289 | None:intergenic | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | + | chr8.2:27872263-27872282 | MS.gene011989:CDS | 30.0% | |
| ATTTCTTGTCATTCTGATTG+TGG | + | chr8.2:27872612-27872631 | MS.gene011989:intron | 30.0% | |
| CAAATTGTGAGGATTATATG+GGG | - | chr8.2:27872902-27872921 | None:intergenic | 30.0% | |
| GAAATCAAGGGGATTAAAAA+TGG | + | chr8.2:27871970-27871989 | MS.gene011989:CDS | 30.0% | |
| TAAATTATTCACCCACTTTC+TGG | + | chr8.2:27872289-27872308 | MS.gene011989:intron | 30.0% | |
| TACATTGCATCAAATACATC+AGG | - | chr8.2:27872442-27872461 | None:intergenic | 30.0% | |
| ! | ATATGGCAGGTCAAATTTTT+GGG | + | chr8.2:27872932-27872951 | MS.gene011989:intron | 30.0% |
| !!! | TTAAGCAGTTTGTTTTGGTT+TGG | + | chr8.2:27872687-27872706 | MS.gene011989:intron | 30.0% |
| AATGTGATCATTCCACATTG+CGG | - | chr8.2:27872246-27872265 | None:intergenic | 35.0% | |
| ATGTCCAAAAGCAATTCTTG+TGG | - | chr8.2:27872108-27872127 | None:intergenic | 35.0% | |
| CATGAGGGAAAAGACTAATT+TGG | - | chr8.2:27872321-27872340 | None:intergenic | 35.0% | |
| CTCTTAATAAAGCAAAGCCA+TGG | - | chr8.2:27872398-27872417 | None:intergenic | 35.0% | |
| TAAAGGTCTCAAATGAGACT+TGG | - | chr8.2:27873031-27873050 | None:intergenic | 35.0% | |
| TGCTTGAGAAAAATCATCTC+CGG | - | chr8.2:27872799-27872818 | None:intergenic | 35.0% | |
| TTGAAGAGAGTGAGAGATAT+TGG | + | chr8.2:27872139-27872158 | MS.gene011989:CDS | 35.0% | |
| ! | ACCTACTTGCTCTAAACTTA+AGG | + | chr8.2:27872575-27872594 | MS.gene011989:intron | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | - | chr8.2:27872304-27872323 | None:intergenic | 35.0% |
| ! | CAATGTCTTTGAAAAAGGGA+TGG | - | chr8.2:27872487-27872506 | None:intergenic | 35.0% |
| ! | CATGGCTTTGCTTTATTAAG+AGG | + | chr8.2:27872396-27872415 | MS.gene011989:CDS | 35.0% |
| ! | GATATGGCAGGTCAAATTTT+TGG | + | chr8.2:27872931-27872950 | MS.gene011989:intron | 35.0% |
| ! | TATGGCAGGTCAAATTTTTG+GGG | + | chr8.2:27872933-27872952 | MS.gene011989:intron | 35.0% |
| ! | TCCTTAAGTTTAGAGCAAGT+AGG | - | chr8.2:27872579-27872598 | None:intergenic | 35.0% |
| ! | TCTACCACAAGAATTGCTTT+TGG | + | chr8.2:27872101-27872120 | MS.gene011989:CDS | 35.0% |
| ! | TTGTAAACTGCGGTATGTTT+TGG | + | chr8.2:27872833-27872852 | MS.gene011989:intron | 35.0% |
| ! | TTTGGATTAGACCAGAAAGT+GGG | - | chr8.2:27872303-27872322 | None:intergenic | 35.0% |
| !! | AGTCTTGATGATCTCTTTTG+TGG | - | chr8.2:27872220-27872239 | None:intergenic | 35.0% |
| !! | CGCATTTAAGCAGTTTGTTT+TGG | + | chr8.2:27872682-27872701 | MS.gene011989:intron | 35.0% |
| !! | TTGGTTTGGTTGTAATTGCA+TGG | + | chr8.2:27872701-27872720 | MS.gene011989:intron | 35.0% |
| AACTTCGTCATATCCTTGAC+CGG | + | chr8.2:27872777-27872796 | MS.gene011989:CDS | 40.0% | |
| AGAAAAATCATCTCCGGTCA+AGG | - | chr8.2:27872793-27872812 | None:intergenic | 40.0% | |
| ATATGGGATGAGCAACACAA+TGG | + | chr8.2:27873071-27873090 | MS.gene011989:CDS | 40.0% | |
| CCAATTGAACCTATTCGACA+GGG | + | chr8.2:27872066-27872085 | MS.gene011989:CDS | 40.0% | |
| CTTCATGTGTATGAATAGCC+CGG | + | chr8.2:27872359-27872378 | MS.gene011989:intron | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr8.2:27872190-27872209 | MS.gene011989:CDS | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr8.2:27872187-27872206 | MS.gene011989:CDS | 40.0% | |
| TCCAATTGAACCTATTCGAC+AGG | + | chr8.2:27872065-27872084 | MS.gene011989:CDS | 40.0% | |
| TTGGTTGTAATTGCATGGCA+GGG | + | chr8.2:27872706-27872725 | MS.gene011989:intron | 40.0% | |
| TTTGGTTGTAATTGCATGGC+AGG | + | chr8.2:27872705-27872724 | MS.gene011989:intron | 40.0% | |
| ! | AGTTGTTATTAGCCGCGAAA+AGG | + | chr8.2:27872742-27872761 | MS.gene011989:CDS | 40.0% |
| ! | ATGGCATTGAAAAGCATGGT+CGG | + | chr8.2:27871946-27871965 | MS.gene011989:CDS | 40.0% |
| ! | CACAGTGGAAACCTCTAAAA+CGG | - | chr8.2:27873118-27873137 | None:intergenic | 40.0% |
| ! | GCTTTTGGACATAATCCGTA+GGG | + | chr8.2:27872116-27872135 | MS.gene011989:CDS | 40.0% |
| ! | TGCTGTTGTCTTTTGTGCTT+CGG | + | chr8.2:27872173-27872192 | MS.gene011989:CDS | 40.0% |
| ! | TGCTTTTGGACATAATCCGT+AGG | + | chr8.2:27872115-27872134 | MS.gene011989:CDS | 40.0% |
| !! | CTTGATGATCTCTTTTGTGG+CGG | - | chr8.2:27872217-27872236 | None:intergenic | 40.0% |
| AACCTATTCGACAGGGACAA+TGG | + | chr8.2:27872073-27872092 | MS.gene011989:CDS | 45.0% | |
| AAGCATGGTCGGAGAAATCA+AGG | + | chr8.2:27871957-27871976 | MS.gene011989:CDS | 45.0% | |
| ACCTATTCGACAGGGACAAT+GGG | + | chr8.2:27872074-27872093 | MS.gene011989:CDS | 45.0% | |
| AGCAAAGCCATGGATAAGCA+CGG | - | chr8.2:27872388-27872407 | None:intergenic | 45.0% | |
| AGCATGGTCGGAGAAATCAA+GGG | + | chr8.2:27871958-27871977 | MS.gene011989:CDS | 45.0% | |
| ATCAAGACTCTTCCGCAATG+TGG | + | chr8.2:27872231-27872250 | MS.gene011989:CDS | 45.0% | |
| CCCTGTCGAATAGGTTCAAT+TGG | - | chr8.2:27872069-27872088 | None:intergenic | 45.0% | |
| GATGAGCAACACAATGGTTG+GGG | + | chr8.2:27873077-27873096 | MS.gene011989:CDS | 45.0% | |
| GGATGAGCAACACAATGGTT+GGG | + | chr8.2:27873076-27873095 | MS.gene011989:CDS | 45.0% | |
| GGTCAAGGATATGACGAAGT+TGG | - | chr8.2:27872778-27872797 | None:intergenic | 45.0% | |
| GTCAAACTCACATCTTGCTC+TGG | + | chr8.2:27872035-27872054 | MS.gene011989:CDS | 45.0% | |
| TAGCCGCGAAAAGGATAAGA+CGG | + | chr8.2:27872751-27872770 | MS.gene011989:CDS | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | - | chr8.2:27872134-27872153 | None:intergenic | 45.0% | |
| AATGAGACTTGGCTCAGTGC+TGG | - | chr8.2:27873020-27873039 | None:intergenic | 50.0% | |
| CAAAGCCATGGATAAGCACG+GGG | - | chr8.2:27872386-27872405 | None:intergenic | 50.0% | |
| GCAAAGCCATGGATAAGCAC+GGG | - | chr8.2:27872387-27872406 | None:intergenic | 50.0% | |
| GCATGGTCGGAGAAATCAAG+GGG | + | chr8.2:27871959-27871978 | MS.gene011989:CDS | 50.0% | |
| GGGATGAGCAACACAATGGT+TGG | + | chr8.2:27873075-27873094 | MS.gene011989:CDS | 50.0% | |
| ! | GGACCGTCTTATCCTTTTCG+CGG | - | chr8.2:27872757-27872776 | None:intergenic | 50.0% |
| !! | GACTTCATGGGCCGTTTTAG+AGG | + | chr8.2:27873104-27873123 | MS.gene011989:CDS | 50.0% |
| AAGACAACAGCAGAACGCGC+AGG | - | chr8.2:27872165-27872184 | None:intergenic | 55.0% | |
| GCCCATTGTCCCTGTCGAAT+AGG | - | chr8.2:27872078-27872097 | None:intergenic | 55.0% | |
| !! | ACTTGGCTCAGTGCTGGTGA+AGG | - | chr8.2:27873014-27873033 | None:intergenic | 55.0% |
| CATGGATAAGCACGGGGACC+GGG | - | chr8.2:27872380-27872399 | None:intergenic | 60.0% | |
| CCATGGATAAGCACGGGGAC+CGG | - | chr8.2:27872381-27872400 | None:intergenic | 60.0% | |
| !! | GGTTGGGGCGCTGACTTCAT+GGG | + | chr8.2:27873092-27873111 | MS.gene011989:CDS | 60.0% |
| !! | TGGTTGGGGCGCTGACTTCA+TGG | + | chr8.2:27873091-27873110 | MS.gene011989:CDS | 60.0% |
| CCGGTCCCCGTGCTTATCCA+TGG | + | chr8.2:27872378-27872397 | MS.gene011989:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 27871946 | 27873148 | 27871946 | ID=MS.gene011989 |
| chr8.2 | mRNA | 27871946 | 27873148 | 27871946 | ID=MS.gene011989.t1;Parent=MS.gene011989 |
| chr8.2 | exon | 27871946 | 27872284 | 27871946 | ID=MS.gene011989.t1.exon1;Parent=MS.gene011989.t1 |
| chr8.2 | CDS | 27871946 | 27872284 | 27871946 | ID=cds.MS.gene011989.t1;Parent=MS.gene011989.t1 |
| chr8.2 | exon | 27872377 | 27872458 | 27872377 | ID=MS.gene011989.t1.exon2;Parent=MS.gene011989.t1 |
| chr8.2 | CDS | 27872377 | 27872458 | 27872377 | ID=cds.MS.gene011989.t1;Parent=MS.gene011989.t1 |
| chr8.2 | exon | 27872727 | 27872844 | 27872727 | ID=MS.gene011989.t1.exon3;Parent=MS.gene011989.t1 |
| chr8.2 | CDS | 27872727 | 27872844 | 27872727 | ID=cds.MS.gene011989.t1;Parent=MS.gene011989.t1 |
| chr8.2 | exon | 27872941 | 27873148 | 27872941 | ID=MS.gene011989.t1.exon4;Parent=MS.gene011989.t1 |
| chr8.2 | CDS | 27872941 | 27873148 | 27872941 | ID=cds.MS.gene011989.t1;Parent=MS.gene011989.t1 |
| Gene Sequence |
| Protein sequence |
