Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012066.t1 | XP_013446370.1 | 95.3 | 339 | 8 | 2 | 1 | 339 | 1 | 331 | 9.70E-137 | 496.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012066.t1 | Q9XGX0 | 50.6 | 239 | 69 | 9 | 126 | 339 | 117 | 331 | 5.6e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012066.t1 | A0A072TSM8 | 95.3 | 339 | 8 | 2 | 1 | 339 | 1 | 331 | 7.0e-137 | 496.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012066.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012066.t1 | MTR_8g076620 | 96.165 | 339 | 5 | 3 | 1 | 339 | 1 | 331 | 0.0 | 664 |
| MS.gene012066.t1 | MTR_5g021130 | 51.507 | 365 | 109 | 13 | 1 | 339 | 1 | 323 | 1.37e-88 | 269 |
| MS.gene012066.t1 | MTR_3g112510 | 44.348 | 345 | 124 | 16 | 1 | 334 | 1 | 288 | 1.39e-63 | 204 |
| MS.gene012066.t1 | MTR_5g089750 | 49.677 | 155 | 55 | 4 | 129 | 260 | 249 | 403 | 1.08e-40 | 148 |
| MS.gene012066.t1 | MTR_4g071110 | 47.887 | 142 | 65 | 2 | 125 | 266 | 13 | 145 | 5.39e-39 | 139 |
| MS.gene012066.t1 | MTR_3g014660 | 41.558 | 154 | 65 | 3 | 129 | 258 | 134 | 286 | 1.01e-33 | 127 |
| MS.gene012066.t1 | MTR_8g039110 | 39.884 | 173 | 73 | 3 | 116 | 258 | 111 | 282 | 4.02e-33 | 125 |
| MS.gene012066.t1 | MTR_1g023230 | 55.455 | 110 | 33 | 2 | 127 | 220 | 120 | 229 | 2.47e-27 | 108 |
| MS.gene012066.t1 | MTR_0363s0040 | 63.793 | 58 | 21 | 0 | 116 | 173 | 111 | 168 | 4.01e-20 | 88.2 |
| MS.gene012066.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 131 | 163 | 44 | 76 | 5.56e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012066.t1 | AT3G51060 | 44.020 | 393 | 143 | 10 | 1 | 339 | 1 | 370 | 5.10e-80 | 248 |
| MS.gene012066.t1 | AT5G66350 | 46.257 | 374 | 123 | 15 | 1 | 339 | 1 | 331 | 1.19e-74 | 233 |
| MS.gene012066.t1 | AT5G66350 | 46.006 | 363 | 120 | 14 | 1 | 328 | 1 | 322 | 2.67e-72 | 227 |
| MS.gene012066.t1 | AT5G66350 | 46.133 | 362 | 119 | 14 | 1 | 327 | 1 | 321 | 4.01e-72 | 227 |
| MS.gene012066.t1 | AT1G19790 | 42.133 | 375 | 149 | 16 | 1 | 338 | 1 | 344 | 5.78e-69 | 219 |
| MS.gene012066.t1 | AT1G19790 | 42.133 | 375 | 149 | 16 | 1 | 338 | 1 | 344 | 5.78e-69 | 219 |
| MS.gene012066.t1 | AT1G75520 | 41.114 | 377 | 153 | 15 | 1 | 339 | 1 | 346 | 7.84e-63 | 204 |
| MS.gene012066.t1 | AT4G36260 | 40.220 | 363 | 147 | 12 | 1 | 337 | 1 | 319 | 1.09e-54 | 182 |
| MS.gene012066.t1 | AT2G21400 | 49.133 | 173 | 82 | 3 | 126 | 295 | 7 | 176 | 1.61e-50 | 167 |
| MS.gene012066.t1 | AT2G21400 | 49.133 | 173 | 82 | 3 | 126 | 295 | 6 | 175 | 1.78e-50 | 166 |
| MS.gene012066.t1 | AT2G21400 | 47.647 | 170 | 74 | 2 | 126 | 295 | 6 | 160 | 1.66e-49 | 164 |
| MS.gene012066.t1 | AT2G21400 | 47.647 | 170 | 74 | 2 | 126 | 295 | 7 | 161 | 1.68e-49 | 164 |
| MS.gene012066.t1 | AT2G18120 | 52.903 | 155 | 58 | 3 | 118 | 263 | 61 | 209 | 5.14e-47 | 159 |
| MS.gene012066.t1 | AT2G18120 | 51.634 | 153 | 61 | 2 | 118 | 263 | 61 | 207 | 2.71e-46 | 157 |
| MS.gene012066.t1 | AT5G12330 | 47.826 | 161 | 54 | 5 | 129 | 260 | 112 | 271 | 4.21e-38 | 138 |
| MS.gene012066.t1 | AT5G12330 | 47.826 | 161 | 54 | 5 | 129 | 260 | 112 | 271 | 4.21e-38 | 138 |
| MS.gene012066.t1 | AT5G12330 | 47.826 | 161 | 54 | 5 | 129 | 260 | 199 | 358 | 8.10e-38 | 139 |
| MS.gene012066.t1 | AT5G33210 | 41.772 | 158 | 71 | 5 | 95 | 237 | 14 | 165 | 4.78e-29 | 110 |
| MS.gene012066.t1 | AT5G33210 | 61.176 | 85 | 23 | 2 | 127 | 201 | 15 | 99 | 3.74e-27 | 103 |
| MS.gene012066.t1 | AT3G54430 | 42.553 | 141 | 59 | 6 | 129 | 258 | 41 | 170 | 3.26e-26 | 103 |
| MS.gene012066.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 129 | 174 | 112 | 157 | 3.84e-21 | 90.9 |
Find 82 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGTTGGTACTACTTTC+TGG | 0.121760 | 8.2:+28738922 | None:intergenic |
| AAAGGAATTCTCTATGATTT+TGG | 0.200894 | 8.2:-28738946 | MS.gene012066:CDS |
| ACAGAGGTAATTTAGAATTA+TGG | 0.238498 | 8.2:-28740274 | MS.gene012066:CDS |
| CACCACAAGAGACACTATTT+TGG | 0.271662 | 8.2:-28740328 | MS.gene012066:CDS |
| TGATCCTTCTTCATTGTATT+CGG | 0.283339 | 8.2:-28738761 | MS.gene012066:CDS |
| AATAATAGTAATTACATGAT+TGG | 0.330195 | 8.2:-28738880 | MS.gene012066:CDS |
| ATAATAGTAATTACATGATT+GGG | 0.347728 | 8.2:-28738879 | MS.gene012066:CDS |
| TACCACTGTTGTTGCCTCCT+CGG | 0.375579 | 8.2:-28738794 | MS.gene012066:CDS |
| ATGGCTGGTTTGTTCTCATT+AGG | 0.380675 | 8.2:-28740404 | MS.gene012066:CDS |
| TAAGCTCACCAGCGGAGTTC+AGG | 0.381652 | 8.2:-28739050 | MS.gene012066:CDS |
| CAGCGGAGTTCAGGTGTGTA+AGG | 0.390315 | 8.2:-28739041 | MS.gene012066:CDS |
| GTTGTTGTGATTCTTCTCCT+TGG | 0.392328 | 8.2:+28740363 | None:intergenic |
| GTTGTTGCTGGTGGTGTTGT+TGG | 0.401531 | 8.2:+28740228 | None:intergenic |
| GTTGTTGGTGCTGTTGTTGT+TGG | 0.405595 | 8.2:+28740243 | None:intergenic |
| TACGGTCCAGGAGTTGGTTT+AGG | 0.417465 | 8.2:-28740152 | MS.gene012066:CDS |
| ACCACTGTTGTTGCCTCCTC+GGG | 0.418082 | 8.2:-28738793 | MS.gene012066:CDS |
| ACTATTGTTGCTGTTATTGT+TGG | 0.418687 | 8.2:+28738909 | None:intergenic |
| CCAGGAGTTGGTTTAGGTGT+TGG | 0.426741 | 8.2:-28740146 | MS.gene012066:CDS |
| GTTTAGGTGTTGGACCAAGC+AGG | 0.429835 | 8.2:-28740136 | MS.gene012066:CDS |
| ACTTCCAGTGGAGGCGGTGT+TGG | 0.438283 | 8.2:-28738853 | MS.gene012066:CDS |
| GGTGCTGTTGTTGTTGGTGT+TGG | 0.440333 | 8.2:+28740249 | None:intergenic |
| TGGTATCAGAGTCGGTGATT+AGG | 0.442544 | 8.2:+28738812 | None:intergenic |
| GCCGTCATGAAGGCATTAAT+CGG | 0.448399 | 8.2:+28738736 | None:intergenic |
| GAGGACAATCTTTCTTAGCT+TGG | 0.464592 | 8.2:+28740003 | None:intergenic |
| TTCTTCTTCAAAGAAATGGC+TGG | 0.464677 | 8.2:-28740419 | None:intergenic |
| TTGTTCTCATTAGGAGGTGG+TGG | 0.466253 | 8.2:-28740395 | MS.gene012066:CDS |
| TTAGAAATATCTCTTTGTAA+AGG | 0.466509 | 8.2:+28739864 | None:intergenic |
| AACGCCAACACCGCCTCCAC+TGG | 0.480699 | 8.2:+28738849 | None:intergenic |
| CAATTGATGATGCAGATGAT+AGG | 0.486383 | 8.2:-28739011 | MS.gene012066:CDS |
| GAGATCGGCAGCGTTTACTA+TGG | 0.486558 | 8.2:-28740078 | MS.gene012066:CDS |
| TCATTAGGAGGTGGTGGAAG+AGG | 0.489984 | 8.2:-28740389 | MS.gene012066:CDS |
| AAACTCATGTTAAAAGCACT+TGG | 0.502171 | 8.2:-28739935 | MS.gene012066:CDS |
| ACATCAGTCGTCGTCGAGAT+CGG | 0.503948 | 8.2:-28740093 | MS.gene012066:CDS |
| GGTTTGTTCTCATTAGGAGG+TGG | 0.504419 | 8.2:-28740398 | MS.gene012066:CDS |
| GCTGGTGAGCTTACCACAGC+AGG | 0.505962 | 8.2:+28739060 | None:intergenic |
| CGCTCACGGCGTCTAGAAGC+AGG | 0.506968 | 8.2:+28739909 | None:intergenic |
| AGGTCTTCTTCTTCAGCTGA+AGG | 0.512980 | 8.2:-28740050 | MS.gene012066:CDS |
| GATCTCTACGGTCCAGGAGT+TGG | 0.516227 | 8.2:-28740158 | MS.gene012066:CDS |
| GCTGGTTTGTTCTCATTAGG+AGG | 0.517479 | 8.2:-28740401 | MS.gene012066:CDS |
| ATTGGAGGACATTTGTTCAA+AGG | 0.517913 | 8.2:-28738964 | MS.gene012066:CDS |
| CCGCGAGATCTCTACGGTCC+AGG | 0.520475 | 8.2:-28740164 | MS.gene012066:CDS |
| AGAGCATTTGAACCATCTCT+AGG | 0.524317 | 8.2:+28739837 | None:intergenic |
| GGGGAGACTTCCAGTGGAGG+CGG | 0.532155 | 8.2:-28738859 | MS.gene012066:CDS |
| TTTAGGTGTTGGACCAAGCA+GGG | 0.533902 | 8.2:-28740135 | MS.gene012066:CDS |
| TTCTTTCCGCGAGATCTCTA+CGG | 0.539130 | 8.2:-28740170 | MS.gene012066:CDS |
| GGGATAAGTTGTCAAGATTG+TGG | 0.548229 | 8.2:-28740029 | MS.gene012066:CDS |
| ATAACTGTTGTTGACGCTCA+CGG | 0.552876 | 8.2:+28739895 | None:intergenic |
| CCAACACCTAAACCAACTCC+TGG | 0.554565 | 8.2:+28740146 | None:intergenic |
| CAAAATAGTGTCTCTTGTGG+TGG | 0.555466 | 8.2:+28740329 | None:intergenic |
| TATCAAACGGCTGTTAACAT+TGG | 0.556930 | 8.2:-28738982 | MS.gene012066:CDS |
| TGATAGGTATGCATATCAAA+CGG | 0.559733 | 8.2:-28738995 | MS.gene012066:CDS |
| CAAACGGCTGTTAACATTGG+AGG | 0.566332 | 8.2:-28738979 | MS.gene012066:CDS |
| TAGAGATCTCGCGGAAAGAA+CGG | 0.567226 | 8.2:+28740173 | None:intergenic |
| ATTTCTAAACGCCCTAGAGA+TGG | 0.568041 | 8.2:-28739849 | MS.gene012066:CDS |
| CGTACCACTAGCCGTCATGA+AGG | 0.569674 | 8.2:+28738726 | None:intergenic |
| TCATCTGATGAAACCCTGCT+TGG | 0.577114 | 8.2:+28740122 | None:intergenic |
| AACTCATGTTAAAAGCACTT+GGG | 0.578823 | 8.2:-28739934 | MS.gene012066:CDS |
| CTTACACACCTGAACTCCGC+TGG | 0.583863 | 8.2:+28739042 | None:intergenic |
| TAATAGTAATTACATGATTG+GGG | 0.584644 | 8.2:-28738878 | MS.gene012066:CDS |
| GGTGGTGGAAGAGGAAACCA+AGG | 0.593423 | 8.2:-28740380 | MS.gene012066:CDS |
| GGTCTTCTTCTTCAGCTGAA+GGG | 0.597588 | 8.2:-28740049 | MS.gene012066:CDS |
| GAGCATTTGAACCATCTCTA+GGG | 0.600057 | 8.2:+28739838 | None:intergenic |
| AGCGGAGTTCAGGTGTGTAA+GGG | 0.600996 | 8.2:-28739040 | MS.gene012066:CDS |
| AGGATCAACAAGTGCGCCCG+AGG | 0.604938 | 8.2:+28738777 | None:intergenic |
| GGAGCCGAATACAATGAAGA+AGG | 0.606433 | 8.2:+28738757 | None:intergenic |
| GAGTCGGTGATTAGGTTCAA+CGG | 0.611827 | 8.2:+28738820 | None:intergenic |
| AATGCCTTCATGACGGCTAG+TGG | 0.616126 | 8.2:-28738730 | MS.gene012066:CDS |
| ATCAACAAGTGCGCCCGAGG+AGG | 0.617141 | 8.2:+28738780 | None:intergenic |
| AACAACAGTGGTATCAGAGT+CGG | 0.622301 | 8.2:+28738804 | None:intergenic |
| ATTGGGGAGACTTCCAGTGG+AGG | 0.623861 | 8.2:-28738862 | MS.gene012066:CDS |
| AGAACTTGTTGTAAGAGTCG+TGG | 0.626794 | 8.2:-28739969 | MS.gene012066:CDS |
| ATGATTGGGGAGACTTCCAG+TGG | 0.628543 | 8.2:-28738865 | MS.gene012066:CDS |
| TCCGATTAATGCCTTCATGA+CGG | 0.631102 | 8.2:-28738737 | MS.gene012066:CDS |
| TGCTGTGGTAAGCTCACCAG+CGG | 0.638941 | 8.2:-28739058 | MS.gene012066:CDS |
| GATGTTTCATCTTACAACAG+AGG | 0.641152 | 8.2:-28740290 | MS.gene012066:CDS |
| TACCAAAATAGTGTCTCTTG+TGG | 0.654055 | 8.2:+28740326 | None:intergenic |
| AAGATGATATGCATGCTGCA+CGG | 0.670001 | 8.2:-28740196 | MS.gene012066:CDS |
| CCTGGACCGTAGAGATCTCG+CGG | 0.671044 | 8.2:+28740164 | None:intergenic |
| GCCCGAGGAGGCAACAACAG+TGG | 0.675386 | 8.2:+28738792 | None:intergenic |
| CAGCGTTTACTATGGCGATG+AGG | 0.700377 | 8.2:-28740070 | MS.gene012066:CDS |
| CAAGTTCTACATCTCATGTG+AGG | 0.701177 | 8.2:+28739984 | None:intergenic |
| GGAGAAGAATCACAACAACA+AGG | 0.732085 | 8.2:-28740359 | MS.gene012066:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTGTTAAAAAATAAA+GGG | - | chr8.2:28740002-28740021 | MS.gene012066:CDS | 10.0% |
| !!! | TTTGTTTTGTTAAAAAATAA+AGG | - | chr8.2:28740001-28740020 | MS.gene012066:CDS | 10.0% |
| !! | AATAATAGTAATTACATGAT+TGG | - | chr8.2:28740223-28740242 | MS.gene012066:CDS | 15.0% |
| !! | ATAATAGTAATTACATGATT+GGG | - | chr8.2:28740224-28740243 | MS.gene012066:CDS | 15.0% |
| !! | TAATAGTAATTACATGATTG+GGG | - | chr8.2:28740225-28740244 | MS.gene012066:CDS | 20.0% |
| !! | TTAGAAATATCTCTTTGTAA+AGG | + | chr8.2:28739242-28739261 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCACAAAAGAAAA+AGG | + | chr8.2:28739709-28739728 | None:intergenic | 20.0% |
| !!! | TGTTTTTCACAAAAGAAAAA+GGG | + | chr8.2:28739708-28739727 | None:intergenic | 20.0% |
| !!! | TTGCTTTTGTTTTTTAGTTA+AGG | - | chr8.2:28739348-28739367 | MS.gene012066:intron | 20.0% |
| ! | AAAACTATGTCATCAGTATT+TGG | + | chr8.2:28739545-28739564 | None:intergenic | 25.0% |
| ! | AAGAATCACAAAGAAAATGA+TGG | + | chr8.2:28739843-28739862 | None:intergenic | 25.0% |
| ! | CTGATAGATATGAAATATGA+TGG | + | chr8.2:28739639-28739658 | None:intergenic | 25.0% |
| ! | GTTAAAAAATAAAGGGTTAG+AGG | - | chr8.2:28740009-28740028 | MS.gene012066:CDS | 25.0% |
| !! | AAAACAAAGAGAGAATCTTT+TGG | - | chr8.2:28739492-28739511 | MS.gene012066:intron | 25.0% |
| !! | AAAGGAATTCTCTATGATTT+TGG | - | chr8.2:28740157-28740176 | MS.gene012066:CDS | 25.0% |
| !! | AAATACTGATGACATAGTTT+TGG | - | chr8.2:28739544-28739563 | MS.gene012066:intron | 25.0% |
| !! | ACAGAGGTAATTTAGAATTA+TGG | - | chr8.2:28738829-28738848 | MS.gene012066:CDS | 25.0% |
| !!! | TTTGTTTTTTAGTTAAGGAC+TGG | - | chr8.2:28739353-28739372 | MS.gene012066:intron | 25.0% |
| AGGAAAAACAGTTTCTTTCT+TGG | + | chr8.2:28739754-28739773 | None:intergenic | 30.0% | |
| CTTAACCATAACACTGAAAA+GGG | + | chr8.2:28739443-28739462 | None:intergenic | 30.0% | |
| TCTTAACCATAACACTGAAA+AGG | + | chr8.2:28739444-28739463 | None:intergenic | 30.0% | |
| TGATAGGTATGCATATCAAA+CGG | - | chr8.2:28740108-28740127 | MS.gene012066:CDS | 30.0% | |
| TGATCCTTCTTCATTGTATT+CGG | - | chr8.2:28740342-28740361 | MS.gene012066:CDS | 30.0% | |
| TGCATTCTGTTGTATTGTTA+AGG | - | chr8.2:28739923-28739942 | MS.gene012066:CDS | 30.0% | |
| TTATTGTTGGTACTACTTTC+TGG | + | chr8.2:28740184-28740203 | None:intergenic | 30.0% | |
| ! | ACTATTGTTGCTGTTATTGT+TGG | + | chr8.2:28740197-28740216 | None:intergenic | 30.0% |
| ! | TCAACTCGTAATTTTCAAAC+AGG | - | chr8.2:28739293-28739312 | MS.gene012066:intron | 30.0% |
| !! | AAACTCATGTTAAAAGCACT+TGG | - | chr8.2:28739168-28739187 | MS.gene012066:intron | 30.0% |
| !! | AACTCATGTTAAAAGCACTT+GGG | - | chr8.2:28739169-28739188 | MS.gene012066:intron | 30.0% |
| AAACAGTTTCTTTCTTGGTC+AGG | + | chr8.2:28739749-28739768 | None:intergenic | 35.0% | |
| AACAGTTTCTTTCTTGGTCA+GGG | + | chr8.2:28739748-28739767 | None:intergenic | 35.0% | |
| ATAAACACACGCAATCGATA+CGG | + | chr8.2:28739593-28739612 | None:intergenic | 35.0% | |
| ATTGGAGGACATTTGTTCAA+AGG | - | chr8.2:28740139-28740158 | MS.gene012066:CDS | 35.0% | |
| GATGTTTCATCTTACAACAG+AGG | - | chr8.2:28738813-28738832 | MS.gene012066:CDS | 35.0% | |
| TACCAAAATAGTGTCTCTTG+TGG | + | chr8.2:28738780-28738799 | None:intergenic | 35.0% | |
| TATCAAACGGCTGTTAACAT+TGG | - | chr8.2:28740121-28740140 | MS.gene012066:CDS | 35.0% | |
| ! | ATTGACCCTTTTCAGTGTTA+TGG | - | chr8.2:28739435-28739454 | MS.gene012066:intron | 35.0% |
| !! | CAATTGATGATGCAGATGAT+AGG | - | chr8.2:28740092-28740111 | MS.gene012066:CDS | 35.0% |
| !!! | GAGAGAATCTTTTGGTTTAG+AGG | - | chr8.2:28739500-28739519 | MS.gene012066:intron | 35.0% |
| AACAACAGTGGTATCAGAGT+CGG | + | chr8.2:28740302-28740321 | None:intergenic | 40.0% | |
| AAGATGATATGCATGCTGCA+CGG | - | chr8.2:28738907-28738926 | MS.gene012066:CDS | 40.0% | |
| ACACTGAAAAGGGTCAATCA+CGG | + | chr8.2:28739433-28739452 | None:intergenic | 40.0% | |
| ATAACTGTTGTTGACGCTCA+CGG | + | chr8.2:28739211-28739230 | None:intergenic | 40.0% | |
| ATGATGGTAGCTAGTGATTG+AGG | + | chr8.2:28739827-28739846 | None:intergenic | 40.0% | |
| ATTTCTAAACGCCCTAGAGA+TGG | - | chr8.2:28739254-28739273 | MS.gene012066:intron | 40.0% | |
| CAAAATAGTGTCTCTTGTGG+TGG | + | chr8.2:28738777-28738796 | None:intergenic | 40.0% | |
| CAAGTTCTACATCTCATGTG+AGG | + | chr8.2:28739122-28739141 | None:intergenic | 40.0% | |
| GAGAGTGAGTGGTGAAATAA+AGG | - | chr8.2:28739462-28739481 | MS.gene012066:intron | 40.0% | |
| GAGCATTTGAACCATCTCTA+GGG | + | chr8.2:28739268-28739287 | None:intergenic | 40.0% | |
| GAGGACAATCTTTCTTAGCT+TGG | + | chr8.2:28739103-28739122 | None:intergenic | 40.0% | |
| GATTGAGGTGAGAATATGTG+TGG | + | chr8.2:28739812-28739831 | None:intergenic | 40.0% | |
| GGAGAAGAATCACAACAACA+AGG | - | chr8.2:28738744-28738763 | MS.gene012066:CDS | 40.0% | |
| GGGATAAGTTGTCAAGATTG+TGG | - | chr8.2:28739074-28739093 | MS.gene012066:CDS | 40.0% | |
| GTACTGTGACATAAGGTGTA+AGG | - | chr8.2:28739380-28739399 | MS.gene012066:intron | 40.0% | |
| GTTATGGTTAAGAGAGTGAG+TGG | - | chr8.2:28739451-28739470 | MS.gene012066:intron | 40.0% | |
| GTTGTTGTGATTCTTCTCCT+TGG | + | chr8.2:28738743-28738762 | None:intergenic | 40.0% | |
| TCCGATTAATGCCTTCATGA+CGG | - | chr8.2:28740366-28740385 | MS.gene012066:CDS | 40.0% | |
| TGGACTTGTACTGTGACATA+AGG | - | chr8.2:28739373-28739392 | MS.gene012066:intron | 40.0% | |
| ! | AGAGCATTTGAACCATCTCT+AGG | + | chr8.2:28739269-28739288 | None:intergenic | 40.0% |
| ! | CACCACAAGAGACACTATTT+TGG | - | chr8.2:28738775-28738794 | MS.gene012066:CDS | 40.0% |
| !! | AGAACTTGTTGTAAGAGTCG+TGG | - | chr8.2:28739134-28739153 | MS.gene012066:intron | 40.0% |
| !! | ATGGCTGGTTTGTTCTCATT+AGG | - | chr8.2:28738699-28738718 | MS.gene012066:CDS | 40.0% |
| !! | CTTGTTGTTGTTGTTGTTGC+TGG | + | chr8.2:28738890-28738909 | None:intergenic | 40.0% |
| AGGTCTTCTTCTTCAGCTGA+AGG | - | chr8.2:28739053-28739072 | MS.gene012066:CDS | 45.0% | |
| CAAACGGCTGTTAACATTGG+AGG | - | chr8.2:28740124-28740143 | MS.gene012066:CDS | 45.0% | |
| GAGGGAATGTGCTAAGAAAG+AGG | + | chr8.2:28739777-28739796 | None:intergenic | 45.0% | |
| GAGTCGGTGATTAGGTTCAA+CGG | + | chr8.2:28740286-28740305 | None:intergenic | 45.0% | |
| GGAATGTGCTAAGAAAGAGG+AGG | + | chr8.2:28739774-28739793 | None:intergenic | 45.0% | |
| GGAGCCGAATACAATGAAGA+AGG | + | chr8.2:28740349-28740368 | None:intergenic | 45.0% | |
| GGTCTTCTTCTTCAGCTGAA+GGG | - | chr8.2:28739054-28739073 | MS.gene012066:CDS | 45.0% | |
| GTGTGGATGTGAAAGAGAGA+GGG | + | chr8.2:28739795-28739814 | None:intergenic | 45.0% | |
| TAGAGATCTCGCGGAAAGAA+CGG | + | chr8.2:28738933-28738952 | None:intergenic | 45.0% | |
| TCATCTGATGAAACCCTGCT+TGG | + | chr8.2:28738984-28739003 | None:intergenic | 45.0% | |
| TGGTATCAGAGTCGGTGATT+AGG | + | chr8.2:28740294-28740313 | None:intergenic | 45.0% | |
| TGTGTGGATGTGAAAGAGAG+AGG | + | chr8.2:28739796-28739815 | None:intergenic | 45.0% | |
| TTCTTTCCGCGAGATCTCTA+CGG | - | chr8.2:28738933-28738952 | MS.gene012066:CDS | 45.0% | |
| TTGTTCTCATTAGGAGGTGG+TGG | - | chr8.2:28738708-28738727 | MS.gene012066:CDS | 45.0% | |
| ! | GGAAGCAAATTTTCCTGCTG+TGG | - | chr8.2:28740030-28740049 | MS.gene012066:CDS | 45.0% |
| ! | GGTTTGTTCTCATTAGGAGG+TGG | - | chr8.2:28738705-28738724 | MS.gene012066:CDS | 45.0% |
| ! | GTTGTTGTTGTTGTTGCTGG+TGG | + | chr8.2:28738887-28738906 | None:intergenic | 45.0% |
| !! | GCCGTCATGAAGGCATTAAT+CGG | + | chr8.2:28740370-28740389 | None:intergenic | 45.0% |
| !! | GCTGGTTTGTTCTCATTAGG+AGG | - | chr8.2:28738702-28738721 | MS.gene012066:CDS | 45.0% |
| !! | GTTGTTGGTGCTGTTGTTGT+TGG | + | chr8.2:28738863-28738882 | None:intergenic | 45.0% |
| !! | TTTAGGTGTTGGACCAAGCA+GGG | - | chr8.2:28738968-28738987 | MS.gene012066:CDS | 45.0% |
| AATGCCTTCATGACGGCTAG+TGG | - | chr8.2:28740373-28740392 | MS.gene012066:CDS | 50.0% | |
| ACACACGCAATCGATACGGT+TGG | + | chr8.2:28739589-28739608 | None:intergenic | 50.0% | |
| ACATCAGTCGTCGTCGAGAT+CGG | - | chr8.2:28739010-28739029 | MS.gene012066:CDS | 50.0% | |
| AGCGGAGTTCAGGTGTGTAA+GGG | - | chr8.2:28740063-28740082 | MS.gene012066:CDS | 50.0% | |
| ATGATTGGGGAGACTTCCAG+TGG | - | chr8.2:28740238-28740257 | MS.gene012066:CDS | 50.0% | |
| CAGCGTTTACTATGGCGATG+AGG | - | chr8.2:28739033-28739052 | MS.gene012066:CDS | 50.0% | |
| CCAACACCTAAACCAACTCC+TGG | + | chr8.2:28738960-28738979 | None:intergenic | 50.0% | |
| GAGATCGGCAGCGTTTACTA+TGG | - | chr8.2:28739025-28739044 | MS.gene012066:CDS | 50.0% | |
| TACCACTGTTGTTGCCTCCT+CGG | - | chr8.2:28740309-28740328 | MS.gene012066:CDS | 50.0% | |
| ! | CCAGGAGTTGGTTTAGGTGT+TGG | - | chr8.2:28738957-28738976 | MS.gene012066:CDS | 50.0% |
| ! | TACGGTCCAGGAGTTGGTTT+AGG | - | chr8.2:28738951-28738970 | MS.gene012066:CDS | 50.0% |
| !! | GGTGCTGTTGTTGTTGGTGT+TGG | + | chr8.2:28738857-28738876 | None:intergenic | 50.0% |
| !! | GTTGTTGCTGGTGGTGTTGT+TGG | + | chr8.2:28738878-28738897 | None:intergenic | 50.0% |
| !! | GTTTAGGTGTTGGACCAAGC+AGG | - | chr8.2:28738967-28738986 | MS.gene012066:CDS | 50.0% |
| !! | TCATTAGGAGGTGGTGGAAG+AGG | - | chr8.2:28738714-28738733 | MS.gene012066:CDS | 50.0% |
| ACCACTGTTGTTGCCTCCTC+GGG | - | chr8.2:28740310-28740329 | MS.gene012066:CDS | 55.0% | |
| ATTGGGGAGACTTCCAGTGG+AGG | - | chr8.2:28740241-28740260 | MS.gene012066:CDS | 55.0% | |
| CAGCGGAGTTCAGGTGTGTA+AGG | - | chr8.2:28740062-28740081 | MS.gene012066:CDS | 55.0% | |
| CGTACCACTAGCCGTCATGA+AGG | + | chr8.2:28740380-28740399 | None:intergenic | 55.0% | |
| CTTACACACCTGAACTCCGC+TGG | + | chr8.2:28740064-28740083 | None:intergenic | 55.0% | |
| GATCTCTACGGTCCAGGAGT+TGG | - | chr8.2:28738945-28738964 | MS.gene012066:CDS | 55.0% | |
| TAAGCTCACCAGCGGAGTTC+AGG | - | chr8.2:28740053-28740072 | MS.gene012066:CDS | 55.0% | |
| TGCTGTGGTAAGCTCACCAG+CGG | - | chr8.2:28740045-28740064 | MS.gene012066:CDS | 55.0% | |
| !! | GGTGGTGGAAGAGGAAACCA+AGG | - | chr8.2:28738723-28738742 | MS.gene012066:CDS | 55.0% |
| ACTTCCAGTGGAGGCGGTGT+TGG | - | chr8.2:28740250-28740269 | MS.gene012066:CDS | 60.0% | |
| AGGATCAACAAGTGCGCCCG+AGG | + | chr8.2:28740329-28740348 | None:intergenic | 60.0% | |
| ATCAACAAGTGCGCCCGAGG+AGG | + | chr8.2:28740326-28740345 | None:intergenic | 60.0% | |
| CCTGGACCGTAGAGATCTCG+CGG | + | chr8.2:28738942-28738961 | None:intergenic | 60.0% | |
| GCTGGTGAGCTTACCACAGC+AGG | + | chr8.2:28740046-28740065 | None:intergenic | 60.0% | |
| AACGCCAACACCGCCTCCAC+TGG | + | chr8.2:28740257-28740276 | None:intergenic | 65.0% | |
| CCGCGAGATCTCTACGGTCC+AGG | - | chr8.2:28738939-28738958 | MS.gene012066:CDS | 65.0% | |
| CGCTCACGGCGTCTAGAAGC+AGG | + | chr8.2:28739197-28739216 | None:intergenic | 65.0% | |
| GCCCGAGGAGGCAACAACAG+TGG | + | chr8.2:28740314-28740333 | None:intergenic | 65.0% | |
| GGGGAGACTTCCAGTGGAGG+CGG | - | chr8.2:28740244-28740263 | MS.gene012066:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 28738699 | 28740426 | 28738699 | ID=MS.gene012066 |
| chr8.2 | mRNA | 28738699 | 28740426 | 28738699 | ID=MS.gene012066.t1;Parent=MS.gene012066 |
| chr8.2 | exon | 28739811 | 28740426 | 28739811 | ID=MS.gene012066.t1.exon1;Parent=MS.gene012066.t1 |
| chr8.2 | CDS | 28739811 | 28740426 | 28739811 | ID=cds.MS.gene012066.t1;Parent=MS.gene012066.t1 |
| chr8.2 | exon | 28738699 | 28739102 | 28738699 | ID=MS.gene012066.t1.exon2;Parent=MS.gene012066.t1 |
| chr8.2 | CDS | 28738699 | 28739102 | 28738699 | ID=cds.MS.gene012066.t1;Parent=MS.gene012066.t1 |
| Gene Sequence |
| Protein sequence |
