Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012081.t1 | XP_003629365.1 | 92.1 | 291 | 21 | 1 | 1 | 289 | 1 | 291 | 1.50E-141 | 512.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012081.t1 | Q9FH57 | 43.7 | 318 | 136 | 6 | 7 | 284 | 3 | 317 | 3.4e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012081.t1 | G7LD10 | 92.1 | 291 | 21 | 1 | 1 | 289 | 1 | 291 | 1.1e-141 | 512.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012081.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012081.t1 | MTR_8g076340 | 91.065 | 291 | 24 | 1 | 1 | 289 | 1 | 291 | 0.0 | 508 |
| MS.gene012081.t1 | MTR_5g021340 | 47.619 | 336 | 114 | 10 | 1 | 288 | 51 | 372 | 1.74e-67 | 215 |
| MS.gene012081.t1 | MTR_4g071590 | 41.254 | 303 | 137 | 10 | 1 | 285 | 1 | 280 | 1.34e-56 | 184 |
| MS.gene012081.t1 | MTR_4g471590 | 41.254 | 303 | 137 | 10 | 1 | 285 | 1 | 280 | 1.34e-56 | 184 |
| MS.gene012081.t1 | MTR_3g117380 | 41.516 | 277 | 144 | 6 | 25 | 289 | 35 | 305 | 9.40e-52 | 172 |
| MS.gene012081.t1 | MTR_8g013950 | 40.989 | 283 | 111 | 9 | 41 | 285 | 31 | 295 | 1.40e-51 | 172 |
| MS.gene012081.t1 | MTR_3g109760 | 41.379 | 261 | 135 | 6 | 40 | 286 | 21 | 277 | 3.32e-49 | 166 |
| MS.gene012081.t1 | MTR_1g006650 | 39.362 | 282 | 134 | 9 | 42 | 286 | 23 | 304 | 7.57e-44 | 152 |
| MS.gene012081.t1 | MTR_7g085410 | 42.593 | 216 | 80 | 6 | 107 | 280 | 39 | 252 | 1.71e-37 | 134 |
| MS.gene012081.t1 | MTR_6g032830 | 39.224 | 232 | 67 | 8 | 113 | 280 | 35 | 256 | 1.80e-37 | 134 |
| MS.gene012081.t1 | MTR_1g046680 | 73.333 | 75 | 20 | 0 | 214 | 288 | 170 | 244 | 7.76e-36 | 129 |
| MS.gene012081.t1 | MTR_1g116010 | 37.850 | 214 | 86 | 6 | 113 | 284 | 26 | 234 | 2.68e-35 | 127 |
| MS.gene012081.t1 | MTR_2g094600 | 51.852 | 135 | 48 | 4 | 158 | 280 | 151 | 280 | 2.21e-33 | 124 |
| MS.gene012081.t1 | MTR_5g007600 | 68.000 | 75 | 24 | 0 | 214 | 288 | 257 | 331 | 1.09e-32 | 123 |
| MS.gene012081.t1 | MTR_5g007600 | 71.212 | 66 | 19 | 0 | 214 | 279 | 155 | 220 | 1.65e-29 | 114 |
| MS.gene012081.t1 | MTR_1g094930 | 76.119 | 67 | 16 | 0 | 216 | 282 | 147 | 213 | 2.11e-32 | 119 |
| MS.gene012081.t1 | MTR_1g094930 | 76.119 | 67 | 16 | 0 | 216 | 282 | 242 | 308 | 3.54e-32 | 121 |
| MS.gene012081.t1 | MTR_4g058910 | 67.532 | 77 | 23 | 1 | 214 | 288 | 312 | 388 | 1.06e-31 | 121 |
| MS.gene012081.t1 | MTR_7g445950 | 33.708 | 178 | 87 | 8 | 105 | 277 | 30 | 181 | 6.34e-20 | 85.5 |
| MS.gene012081.t1 | MTR_7g446110 | 56.452 | 62 | 27 | 0 | 216 | 277 | 187 | 248 | 1.12e-19 | 86.3 |
| MS.gene012081.t1 | MTR_7g446070 | 29.944 | 177 | 107 | 4 | 105 | 277 | 30 | 193 | 9.30e-18 | 79.7 |
| MS.gene012081.t1 | MTR_7g445980 | 53.030 | 66 | 30 | 1 | 214 | 278 | 31 | 96 | 1.90e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012081.t1 | AT5G66320 | 44.479 | 317 | 135 | 7 | 7 | 284 | 3 | 317 | 1.45e-68 | 216 |
| MS.gene012081.t1 | AT5G66320 | 44.479 | 317 | 135 | 7 | 7 | 284 | 3 | 317 | 1.45e-68 | 216 |
| MS.gene012081.t1 | AT4G32890 | 40.000 | 275 | 109 | 8 | 43 | 285 | 16 | 266 | 5.43e-53 | 175 |
| MS.gene012081.t1 | AT4G36240 | 42.169 | 249 | 126 | 4 | 40 | 288 | 6 | 236 | 3.81e-52 | 171 |
| MS.gene012081.t1 | AT4G34680 | 40.000 | 290 | 128 | 10 | 1 | 285 | 1 | 249 | 8.38e-47 | 158 |
| MS.gene012081.t1 | AT4G34680 | 40.000 | 290 | 128 | 10 | 1 | 285 | 1 | 249 | 8.38e-47 | 158 |
| MS.gene012081.t1 | AT3G60530 | 47.027 | 185 | 76 | 3 | 100 | 284 | 64 | 226 | 9.21e-46 | 154 |
| MS.gene012081.t1 | AT2G45050 | 42.601 | 223 | 97 | 5 | 76 | 286 | 46 | 249 | 1.46e-43 | 149 |
| MS.gene012081.t1 | AT5G25830 | 38.571 | 280 | 130 | 11 | 44 | 285 | 13 | 288 | 4.26e-43 | 150 |
| MS.gene012081.t1 | AT3G51080 | 89.041 | 73 | 8 | 0 | 216 | 288 | 221 | 293 | 3.59e-42 | 147 |
| MS.gene012081.t1 | AT1G08010 | 70.833 | 72 | 21 | 0 | 213 | 284 | 217 | 288 | 3.34e-33 | 124 |
| MS.gene012081.t1 | AT1G08010 | 70.833 | 72 | 21 | 0 | 213 | 284 | 217 | 288 | 3.34e-33 | 124 |
| MS.gene012081.t1 | AT1G08010 | 70.833 | 72 | 21 | 0 | 213 | 284 | 217 | 288 | 3.34e-33 | 124 |
| MS.gene012081.t1 | AT3G54810 | 76.471 | 68 | 16 | 0 | 216 | 283 | 229 | 296 | 6.34e-32 | 120 |
| MS.gene012081.t1 | AT3G54810 | 76.471 | 68 | 16 | 0 | 216 | 283 | 229 | 296 | 6.34e-32 | 120 |
| MS.gene012081.t1 | AT1G08000 | 69.444 | 72 | 22 | 0 | 213 | 284 | 215 | 286 | 3.45e-31 | 118 |
| MS.gene012081.t1 | AT1G08000 | 69.444 | 72 | 22 | 0 | 213 | 284 | 215 | 286 | 3.45e-31 | 118 |
| MS.gene012081.t1 | AT3G45170 | 65.714 | 70 | 24 | 0 | 218 | 287 | 117 | 186 | 2.10e-29 | 111 |
| MS.gene012081.t1 | AT2G28340 | 64.615 | 65 | 23 | 0 | 218 | 282 | 193 | 257 | 3.01e-25 | 102 |
| MS.gene012081.t1 | AT2G18380 | 60.000 | 40 | 16 | 0 | 209 | 248 | 85 | 124 | 1.82e-11 | 62.8 |
| MS.gene012081.t1 | AT5G26930 | 57.143 | 42 | 18 | 0 | 210 | 251 | 20 | 61 | 4.91e-11 | 59.7 |
Find 59 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCGCATCTCAATAACTTTC+CGG | 0.265019 | 8.4:-29281609 | None:intergenic |
| CGGAAGAAGGAGGTTGTTCC+TGG | 0.308566 | 8.4:+29281631 | MS.gene012081:CDS |
| GATGAATTGGCTAATGAAAT+TGG | 0.328161 | 8.4:-29281304 | None:intergenic |
| AACAAACTGGTTGTTGAGTA+TGG | 0.356636 | 8.4:-29280782 | None:intergenic |
| TTGTGGGGTTCGTTATAAAT+CGG | 0.359488 | 8.4:+29281516 | MS.gene012081:CDS |
| GAGTACCGGAACGGTGAGTT+CGG | 0.425105 | 8.4:-29280818 | None:intergenic |
| TTCATGTTCTTGTTCTTCGT+TGG | 0.429278 | 8.4:-29280677 | None:intergenic |
| TGGAGTGTGAAATTTCGTTT+TGG | 0.430031 | 8.4:-29280762 | None:intergenic |
| ACGCCTCTTGCTTCTCCGTC+CGG | 0.456416 | 8.4:-29281409 | None:intergenic |
| AGTTGAGCTTGAAGATGAAT+TGG | 0.456507 | 8.4:-29281317 | None:intergenic |
| AAATCTTCTAACAACGTTTG+TGG | 0.458911 | 8.4:-29280586 | None:intergenic |
| CCTGGTCCGGCTCGCCATTG+AGG | 0.462863 | 8.4:-29281469 | None:intergenic |
| CTACAAGCGGGTCTATATTC+CGG | 0.463631 | 8.4:-29281550 | None:intergenic |
| TAAATCGGGTCGGTTGTTAC+CGG | 0.468838 | 8.4:+29281531 | MS.gene012081:CDS |
| TGTGGGGTTCGTTATAAATC+GGG | 0.473414 | 8.4:+29281517 | MS.gene012081:CDS |
| TGAACATTCCTCGAGGTTTG+AGG | 0.473610 | 8.4:-29281350 | None:intergenic |
| AAACACTTTGTAATGCTTGT+GGG | 0.474975 | 8.4:+29281500 | MS.gene012081:CDS |
| GGTGTTGAAAACGTGGGTTT+TGG | 0.479696 | 8.4:-29281214 | None:intergenic |
| TACTTCCGAACTCACCGTTC+CGG | 0.482592 | 8.4:+29280813 | MS.gene012081:CDS |
| CATCTACAGGAGCTATGTCT+TGG | 0.484747 | 8.4:-29280624 | None:intergenic |
| AGAAGCAAGAGAACTAGAAC+CGG | 0.486054 | 8.4:+29281268 | MS.gene012081:CDS |
| AAGAAGCTGCTGATTTAGAA+TGG | 0.493576 | 8.4:+29281113 | MS.gene012081:CDS |
| AAGTAGGTAATGAAACAAAC+TGG | 0.494133 | 8.4:-29280795 | None:intergenic |
| CCTCAATGGCGAGCCGGACC+AGG | 0.495319 | 8.4:+29281469 | MS.gene012081:CDS |
| AACACCATGTTTCAAAACTC+CGG | 0.497832 | 8.4:+29281231 | MS.gene012081:CDS |
| TATTGAGATGCGGCGGAAGA+AGG | 0.503721 | 8.4:+29281618 | MS.gene012081:CDS |
| CTAGAACCGGTATTCGTGTA+TGG | 0.507115 | 8.4:+29281281 | MS.gene012081:CDS |
| TGCAATTCACTCGAAAATGT+AGG | 0.515398 | 8.4:-29281574 | None:intergenic |
| AAAACACTTTGTAATGCTTG+TGG | 0.520445 | 8.4:+29281499 | MS.gene012081:CDS |
| AAGCAAGAGGCGTGCCGCGG+CGG | 0.524432 | 8.4:+29281419 | MS.gene012081:CDS |
| AAGACTCCTCAATGGCGAGC+CGG | 0.535933 | 8.4:+29281463 | MS.gene012081:CDS |
| TCGACAAAGAAATCATCTAC+AGG | 0.546740 | 8.4:-29280637 | None:intergenic |
| GCAATTCACTCGAAAATGTA+GGG | 0.548717 | 8.4:-29281573 | None:intergenic |
| CGAAAATGTAGGGCTACAAG+CGG | 0.550905 | 8.4:-29281563 | None:intergenic |
| CAATGGCGAGCCGGACCAGG+TGG | 0.553655 | 8.4:+29281472 | MS.gene012081:CDS |
| AGCGAAGAGGATGATTTCAC+CGG | 0.558122 | 8.4:+29281390 | MS.gene012081:CDS |
| AATTGGCCATACACGAATAC+CGG | 0.562778 | 8.4:-29281287 | None:intergenic |
| CGAGGAATGTTCAAAGCCAC+CGG | 0.566500 | 8.4:+29281360 | MS.gene012081:CDS |
| ATGTTTCAAAACTCCGGCAC+CGG | 0.567549 | 8.4:+29281237 | MS.gene012081:CDS |
| AACACTTTGTAATGCTTGTG+GGG | 0.570684 | 8.4:+29281501 | MS.gene012081:CDS |
| AATTGCATTCAAATCATCAC+CGG | 0.574316 | 8.4:+29281590 | MS.gene012081:CDS |
| GAGAAGCAAGAGGCGTGCCG+CGG | 0.580601 | 8.4:+29281416 | MS.gene012081:CDS |
| GGAACGGTGAGTTCGGAAGT+AGG | 0.583372 | 8.4:-29280811 | None:intergenic |
| AATGGCGAGCCGGACCAGGT+GGG | 0.586994 | 8.4:+29281473 | MS.gene012081:CDS |
| GGGTTCGTTATAAATCGGGT+CGG | 0.607157 | 8.4:+29281521 | MS.gene012081:CDS |
| TGAGATGCGGCGGAAGAAGG+AGG | 0.620640 | 8.4:+29281621 | MS.gene012081:CDS |
| GAAAATGTAGGGCTACAAGC+GGG | 0.623200 | 8.4:-29281562 | None:intergenic |
| AAGAGGATGATTTCACCGGA+CGG | 0.639911 | 8.4:+29281394 | MS.gene012081:CDS |
| ACCGGAAAGTTATTGAGATG+CGG | 0.641146 | 8.4:+29281608 | MS.gene012081:CDS |
| GAAACATGGTGTTGAAAACG+TGG | 0.645272 | 8.4:-29281221 | None:intergenic |
| TCACCGGACGGAGAAGCAAG+AGG | 0.653220 | 8.4:+29281406 | MS.gene012081:CDS |
| GAATAGAGAGAGTACCGGAA+CGG | 0.659982 | 8.4:-29280827 | None:intergenic |
| GTGTGCAGAAGACTCCTCAA+TGG | 0.671474 | 8.4:+29281455 | MS.gene012081:CDS |
| CCGCGGCGGTGTAGTCATTG+TGG | 0.682078 | 8.4:+29281433 | MS.gene012081:CDS |
| GGAAAGTTATTGAGATGCGG+CGG | 0.689583 | 8.4:+29281611 | MS.gene012081:CDS |
| GTGGCTTTGAACATTCCTCG+AGG | 0.689945 | 8.4:-29281357 | None:intergenic |
| ACTTTCTTCCTCAAACCTCG+AGG | 0.695600 | 8.4:+29281342 | MS.gene012081:CDS |
| AAACATGGTGTTGAAAACGT+GGG | 0.703723 | 8.4:-29281220 | None:intergenic |
| CCACAATGACTACACCGCCG+CGG | 0.734673 | 8.4:-29281433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTAAGATTGTTTTTTTA+AGG | + | chr8.4:29280888-29280907 | MS.gene012081:intron | 15.0% |
| !! | AATTCATCAAAAACTAAGTT+TGG | - | chr8.4:29281065-29281084 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTTTTAATGTAAG+AGG | - | chr8.4:29280852-29280871 | None:intergenic | 20.0% |
| !! | TTTATGTGACATTTTCATAC+TGG | + | chr8.4:29280920-29280939 | MS.gene012081:intron | 25.0% |
| !!! | ACATTGGTTTTGTTTTTCTT+CGG | + | chr8.4:29281005-29281024 | MS.gene012081:intron | 25.0% |
| !!! | CAGTTTTAACATAAACACAA+CGG | + | chr8.4:29280552-29280571 | MS.gene012081:CDS | 25.0% |
| !!! | TGAAATTTCGTTTTGGTTTT+GGG | - | chr8.4:29280758-29280777 | None:intergenic | 25.0% |
| AAAACACTTTGTAATGCTTG+TGG | + | chr8.4:29281499-29281518 | MS.gene012081:CDS | 30.0% | |
| AAACACTTTGTAATGCTTGT+GGG | + | chr8.4:29281500-29281519 | MS.gene012081:CDS | 30.0% | |
| AAATCTTCTAACAACGTTTG+TGG | - | chr8.4:29280589-29280608 | None:intergenic | 30.0% | |
| AAGTAGGTAATGAAACAAAC+TGG | - | chr8.4:29280798-29280817 | None:intergenic | 30.0% | |
| AATTGCATTCAAATCATCAC+CGG | + | chr8.4:29281590-29281609 | MS.gene012081:CDS | 30.0% | |
| ACCTACAAAAATTGCAACTT+TGG | - | chr8.4:29281091-29281110 | None:intergenic | 30.0% | |
| GATGAATTGGCTAATGAAAT+TGG | - | chr8.4:29281307-29281326 | None:intergenic | 30.0% | |
| TGCTGACATGAAAATTATGA+AGG | + | chr8.4:29281038-29281057 | MS.gene012081:intron | 30.0% | |
| ! | AAGTTGGAGATTTTCTGTTT+TGG | - | chr8.4:29281176-29281195 | None:intergenic | 30.0% |
| ! | ACCAAAGTTGCAATTTTTGT+AGG | + | chr8.4:29281087-29281106 | MS.gene012081:intron | 30.0% |
| ! | AGTTGGAGATTTTCTGTTTT+GGG | - | chr8.4:29281175-29281194 | None:intergenic | 30.0% |
| !! | CAAGCATTACAAAGTGTTTT+CGG | - | chr8.4:29281499-29281518 | None:intergenic | 30.0% |
| !!! | GTGAAATTTCGTTTTGGTTT+TGG | - | chr8.4:29280759-29280778 | None:intergenic | 30.0% |
| AACAAACTGGTTGTTGAGTA+TGG | - | chr8.4:29280785-29280804 | None:intergenic | 35.0% | |
| AACACCATGTTTCAAAACTC+CGG | + | chr8.4:29281231-29281250 | MS.gene012081:CDS | 35.0% | |
| AACACTTTGTAATGCTTGTG+GGG | + | chr8.4:29281501-29281520 | MS.gene012081:CDS | 35.0% | |
| AGTTGAGCTTGAAGATGAAT+TGG | - | chr8.4:29281320-29281339 | None:intergenic | 35.0% | |
| GAAAATGTCAGAGACTACAT+TGG | + | chr8.4:29280989-29281008 | MS.gene012081:intron | 35.0% | |
| GCAATTCACTCGAAAATGTA+GGG | - | chr8.4:29281576-29281595 | None:intergenic | 35.0% | |
| TAGTCGTATGTTATACCGTT+CGG | + | chr8.4:29280951-29280970 | MS.gene012081:intron | 35.0% | |
| TCGACAAAGAAATCATCTAC+AGG | - | chr8.4:29280640-29280659 | None:intergenic | 35.0% | |
| TGCAATTCACTCGAAAATGT+AGG | - | chr8.4:29281577-29281596 | None:intergenic | 35.0% | |
| TTCATGTTCTTGTTCTTCGT+TGG | - | chr8.4:29280680-29280699 | None:intergenic | 35.0% | |
| TTGTGGGGTTCGTTATAAAT+CGG | + | chr8.4:29281516-29281535 | MS.gene012081:CDS | 35.0% | |
| ! | AAACATGGTGTTGAAAACGT+GGG | - | chr8.4:29281223-29281242 | None:intergenic | 35.0% |
| ! | TGGAGTGTGAAATTTCGTTT+TGG | - | chr8.4:29280765-29280784 | None:intergenic | 35.0% |
| !! | AAGAAGCTGCTGATTTAGAA+TGG | + | chr8.4:29281113-29281132 | MS.gene012081:CDS | 35.0% |
| !!! | TGTTTTGGGAAATTCTGAGA+AGG | - | chr8.4:29281161-29281180 | None:intergenic | 35.0% |
| AATTGGCCATACACGAATAC+CGG | - | chr8.4:29281290-29281309 | None:intergenic | 40.0% | |
| ACCGGAAAGTTATTGAGATG+CGG | + | chr8.4:29281608-29281627 | MS.gene012081:CDS | 40.0% | |
| AGAAGCAAGAGAACTAGAAC+CGG | + | chr8.4:29281268-29281287 | MS.gene012081:CDS | 40.0% | |
| AGTCGTATGTTATACCGTTC+GGG | + | chr8.4:29280952-29280971 | MS.gene012081:intron | 40.0% | |
| ATATCCAAATTCGTCCCGAA+CGG | - | chr8.4:29280969-29280988 | None:intergenic | 40.0% | |
| TGTGGGGTTCGTTATAAATC+GGG | + | chr8.4:29281517-29281536 | MS.gene012081:CDS | 40.0% | |
| ! | AAGAGGAATAGAGAGAGTAC+CGG | - | chr8.4:29280835-29280854 | None:intergenic | 40.0% |
| ! | CATGAGCTTTTCGTAGAAGT+TGG | - | chr8.4:29281192-29281211 | None:intergenic | 40.0% |
| ! | GAAACATGGTGTTGAAAACG+TGG | - | chr8.4:29281224-29281243 | None:intergenic | 40.0% |
| !!! | ATCCTCTTCGCTTTTTTCTC+CGG | - | chr8.4:29281382-29281401 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGTGTTGTTTTGA+GGG | - | chr8.4:29280744-29280763 | None:intergenic | 40.0% |
| !!! | GTTTTGGGTGTTGTTTTGAG+GGG | - | chr8.4:29280743-29280762 | None:intergenic | 40.0% |
| !!! | TGGTTTTGGGTGTTGTTTTG+AGG | - | chr8.4:29280745-29280764 | None:intergenic | 40.0% |
| AAGAGGATGATTTCACCGGA+CGG | + | chr8.4:29281394-29281413 | MS.gene012081:CDS | 45.0% | |
| ACTTTCTTCCTCAAACCTCG+AGG | + | chr8.4:29281342-29281361 | MS.gene012081:CDS | 45.0% | |
| AGCGAAGAGGATGATTTCAC+CGG | + | chr8.4:29281390-29281409 | MS.gene012081:CDS | 45.0% | |
| ATGTTTCAAAACTCCGGCAC+CGG | + | chr8.4:29281237-29281256 | MS.gene012081:CDS | 45.0% | |
| CATCTACAGGAGCTATGTCT+TGG | - | chr8.4:29280627-29280646 | None:intergenic | 45.0% | |
| CGAAAATGTAGGGCTACAAG+CGG | - | chr8.4:29281566-29281585 | None:intergenic | 45.0% | |
| CTACAAGCGGGTCTATATTC+CGG | - | chr8.4:29281553-29281572 | None:intergenic | 45.0% | |
| CTAGAACCGGTATTCGTGTA+TGG | + | chr8.4:29281281-29281300 | MS.gene012081:CDS | 45.0% | |
| GAAAATGTAGGGCTACAAGC+GGG | - | chr8.4:29281565-29281584 | None:intergenic | 45.0% | |
| GCCGCATCTCAATAACTTTC+CGG | - | chr8.4:29281612-29281631 | None:intergenic | 45.0% | |
| GGAAAGTTATTGAGATGCGG+CGG | + | chr8.4:29281611-29281630 | MS.gene012081:CDS | 45.0% | |
| GGGTTCGTTATAAATCGGGT+CGG | + | chr8.4:29281521-29281540 | MS.gene012081:CDS | 45.0% | |
| TAAATCGGGTCGGTTGTTAC+CGG | + | chr8.4:29281531-29281550 | MS.gene012081:CDS | 45.0% | |
| TATACCGTTCGGGACGAATT+TGG | + | chr8.4:29280962-29280981 | MS.gene012081:intron | 45.0% | |
| TGAACATTCCTCGAGGTTTG+AGG | - | chr8.4:29281353-29281372 | None:intergenic | 45.0% | |
| !! | CTCTTGCTTCTTGCTTTTGC+CGG | - | chr8.4:29281259-29281278 | None:intergenic | 45.0% |
| !! | GAATAGAGAGAGTACCGGAA+CGG | - | chr8.4:29280830-29280849 | None:intergenic | 45.0% |
| !! | GGTGTTGAAAACGTGGGTTT+TGG | - | chr8.4:29281217-29281236 | None:intergenic | 45.0% |
| CACCGGAGAAAAAAGCGAAG+AGG | + | chr8.4:29281377-29281396 | MS.gene012081:CDS | 50.0% | |
| CGAGGAATGTTCAAAGCCAC+CGG | + | chr8.4:29281360-29281379 | MS.gene012081:CDS | 50.0% | |
| GTGTGCAGAAGACTCCTCAA+TGG | + | chr8.4:29281455-29281474 | MS.gene012081:CDS | 50.0% | |
| TACTTCCGAACTCACCGTTC+CGG | + | chr8.4:29280813-29280832 | MS.gene012081:CDS | 50.0% | |
| TATTGAGATGCGGCGGAAGA+AGG | + | chr8.4:29281618-29281637 | MS.gene012081:CDS | 50.0% | |
| !! | GTGGCTTTGAACATTCCTCG+AGG | - | chr8.4:29281360-29281379 | None:intergenic | 50.0% |
| !!! | CTCTTCGCTTTTTTCTCCGG+TGG | - | chr8.4:29281379-29281398 | None:intergenic | 50.0% |
| !!! | GGGTGTTGTTTTGAGGGGTA+TGG | - | chr8.4:29280738-29280757 | None:intergenic | 50.0% |
| !!! | GGTGCCGGAGTTTTGAAACA+TGG | - | chr8.4:29281238-29281257 | None:intergenic | 50.0% |
| AAGACTCCTCAATGGCGAGC+CGG | + | chr8.4:29281463-29281482 | MS.gene012081:CDS | 55.0% | |
| CGGAAGAAGGAGGTTGTTCC+TGG | + | chr8.4:29281631-29281650 | MS.gene012081:CDS | 55.0% | |
| GGAACGGTGAGTTCGGAAGT+AGG | - | chr8.4:29280814-29280833 | None:intergenic | 55.0% | |
| !! | CAAAGTGTTTTCGGCCCACC+TGG | - | chr8.4:29281490-29281509 | None:intergenic | 55.0% |
| !! | CTTCTTGCTTTTGCCGGTGC+CGG | - | chr8.4:29281253-29281272 | None:intergenic | 55.0% |
| !! | GAGTACCGGAACGGTGAGTT+CGG | - | chr8.4:29280821-29280840 | None:intergenic | 55.0% |
| ACGCCTCTTGCTTCTCCGTC+CGG | - | chr8.4:29281412-29281431 | None:intergenic | 60.0% | |
| CCACAATGACTACACCGCCG+CGG | - | chr8.4:29281436-29281455 | None:intergenic | 60.0% | |
| TCACCGGACGGAGAAGCAAG+AGG | + | chr8.4:29281406-29281425 | MS.gene012081:CDS | 60.0% | |
| TGAGATGCGGCGGAAGAAGG+AGG | + | chr8.4:29281621-29281640 | MS.gene012081:CDS | 60.0% | |
| ! | TGTTTTCGGCCCACCTGGTC+CGG | - | chr8.4:29281485-29281504 | None:intergenic | 60.0% |
| AATGGCGAGCCGGACCAGGT+GGG | + | chr8.4:29281473-29281492 | MS.gene012081:CDS | 65.0% | |
| CCGCGGCGGTGTAGTCATTG+TGG | + | chr8.4:29281433-29281452 | MS.gene012081:CDS | 65.0% | |
| ! | GAGAAGCAAGAGGCGTGCCG+CGG | + | chr8.4:29281416-29281435 | MS.gene012081:CDS | 65.0% |
| CAATGGCGAGCCGGACCAGG+TGG | + | chr8.4:29281472-29281491 | MS.gene012081:CDS | 70.0% | |
| CCTCAATGGCGAGCCGGACC+AGG | + | chr8.4:29281469-29281488 | MS.gene012081:CDS | 70.0% | |
| ! | AAGCAAGAGGCGTGCCGCGG+CGG | + | chr8.4:29281419-29281438 | MS.gene012081:CDS | 70.0% |
| ! | CCTGGTCCGGCTCGCCATTG+AGG | - | chr8.4:29281472-29281491 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 29280517 | 29281660 | 29280517 | ID=MS.gene012081 |
| chr8.4 | mRNA | 29280517 | 29281660 | 29280517 | ID=MS.gene012081.t1;Parent=MS.gene012081 |
| chr8.4 | exon | 29280517 | 29280834 | 29280517 | ID=MS.gene012081.t1.exon1;Parent=MS.gene012081.t1 |
| chr8.4 | CDS | 29280517 | 29280834 | 29280517 | ID=cds.MS.gene012081.t1;Parent=MS.gene012081.t1 |
| chr8.4 | exon | 29281109 | 29281660 | 29281109 | ID=MS.gene012081.t1.exon2;Parent=MS.gene012081.t1 |
| chr8.4 | CDS | 29281109 | 29281660 | 29281109 | ID=cds.MS.gene012081.t1;Parent=MS.gene012081.t1 |
| Gene Sequence |
| Protein sequence |