Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012094.t1 | XP_003629342.2 | 84.1 | 517 | 74 | 1 | 1 | 517 | 49 | 557 | 9.10E-203 | 716.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012094.t1 | Q56XU4 | 27.1 | 528 | 192 | 13 | 11 | 516 | 53 | 409 | 1.7e-32 | 142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012094.t1 | G7LCY7 | 84.1 | 517 | 74 | 1 | 1 | 517 | 49 | 557 | 6.6e-203 | 716.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012094.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012094.t1 | MTR_8g076080 | 95.745 | 517 | 14 | 1 | 1 | 517 | 49 | 557 | 0.0 | 996 |
| MS.gene012094.t1 | MTR_1g019120 | 35.426 | 223 | 101 | 4 | 12 | 229 | 60 | 244 | 2.43e-29 | 120 |
| MS.gene012094.t1 | MTR_1g019120 | 45.000 | 100 | 52 | 2 | 421 | 517 | 307 | 406 | 1.07e-17 | 85.5 |
| MS.gene012094.t1 | MTR_1g019120 | 45.000 | 100 | 52 | 2 | 421 | 517 | 192 | 291 | 3.44e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012094.t1 | AT5G66270 | 30.382 | 497 | 232 | 16 | 11 | 498 | 36 | 427 | 8.92e-42 | 155 |
| MS.gene012094.t1 | AT3G51180 | 29.240 | 513 | 266 | 14 | 11 | 496 | 53 | 495 | 2.49e-39 | 150 |
| MS.gene012094.t1 | AT1G19860 | 38.462 | 221 | 96 | 6 | 11 | 224 | 55 | 242 | 4.05e-36 | 139 |
| MS.gene012094.t1 | AT1G19860 | 35.526 | 152 | 77 | 7 | 386 | 517 | 262 | 412 | 9.10e-15 | 76.6 |
| MS.gene012094.t1 | AT1G19860 | 38.462 | 221 | 96 | 6 | 11 | 224 | 53 | 240 | 5.28e-36 | 139 |
| MS.gene012094.t1 | AT1G19860 | 35.526 | 152 | 77 | 7 | 386 | 517 | 260 | 410 | 1.05e-14 | 76.6 |
Find 140 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACATTCCTAAGATAAAA+TGG | 0.151328 | 8.4:+29442951 | MS.gene012094:CDS |
| GCCTCAGCCAGATTCATTTC+TGG | 0.195716 | 8.4:+29444189 | MS.gene012094:CDS |
| CCAGATTCATTTCTGGCATC+TGG | 0.226020 | 8.4:+29444196 | MS.gene012094:CDS |
| ATGTAGCCCTTCTGTTTCTT+TGG | 0.231921 | 8.4:+29443352 | MS.gene012094:intron |
| TCCATGGTTACACTCACTTC+TGG | 0.273989 | 8.4:+29443797 | MS.gene012094:CDS |
| CACTCGATGTGGCAGCTTCT+AGG | 0.275678 | 8.4:+29443861 | MS.gene012094:CDS |
| AGAAGGGGATATTGGTTTAC+TGG | 0.298051 | 8.4:-29444068 | None:intergenic |
| AGTTTGTGTTCAGTCCTAAT+TGG | 0.311809 | 8.4:+29443149 | MS.gene012094:intron |
| ACAGTTCCATTGCCTCCTTC+TGG | 0.313266 | 8.4:+29444265 | MS.gene012094:CDS |
| CCAGCTGCAACTAGCCAATT+AGG | 0.324873 | 8.4:-29443163 | None:intergenic |
| AGGAGGAATGGCAGAGGGTC+GGG | 0.328507 | 8.4:-29443251 | None:intergenic |
| TATGTGCCAATTTCATATCT+TGG | 0.331995 | 8.4:-29444468 | None:intergenic |
| TTCACTGCTGCTGCTAATTT+AGG | 0.340907 | 8.4:-29443461 | None:intergenic |
| GATATTGGTTTACTGGATAC+TGG | 0.348375 | 8.4:-29444061 | None:intergenic |
| TAACTTCCAAGATATGAAAT+TGG | 0.355285 | 8.4:+29444462 | MS.gene012094:CDS |
| GATGAAACTGATGGAATTGC+GGG | 0.358492 | 8.4:-29443923 | None:intergenic |
| AAGCCTTATCAAACAAGTTC+AGG | 0.368435 | 8.4:+29444334 | MS.gene012094:CDS |
| GGAATTACGGTCTGAACTAT+TGG | 0.371884 | 8.4:-29443540 | None:intergenic |
| TCCTCCTCGATGGGAATGAT+TGG | 0.373518 | 8.4:-29443419 | None:intergenic |
| AGCAGGGGTATCTTCTAGTT+TGG | 0.377653 | 8.4:+29443601 | MS.gene012094:CDS |
| AATTGAACCTTTGATTGGTT+AGG | 0.381590 | 8.4:-29442926 | None:intergenic |
| AATGGAGCTGACGCAGTTGC+TGG | 0.385981 | 8.4:-29444031 | None:intergenic |
| ATTGAATACGATGGAATTGC+AGG | 0.387770 | 8.4:-29443986 | None:intergenic |
| AAAATTATTGTTGACAGGTC+TGG | 0.391698 | 8.4:-29444128 | None:intergenic |
| CAGATTCATTTCTGGCATCT+GGG | 0.392898 | 8.4:+29444197 | MS.gene012094:CDS |
| TCATCTTTCAATCCTACATC+TGG | 0.397689 | 8.4:+29443941 | MS.gene012094:CDS |
| GATAAGCTGGACTCACAAAT+AGG | 0.397813 | 8.4:+29444427 | MS.gene012094:CDS |
| GCAAGCAGGCTTAATTGATA+TGG | 0.398979 | 8.4:+29443679 | MS.gene012094:CDS |
| ATTGAACCTTTGATTGGTTA+GGG | 0.402352 | 8.4:-29442925 | None:intergenic |
| AAATTATTGTTGACAGGTCT+GGG | 0.408470 | 8.4:-29444127 | None:intergenic |
| GAATCTATCGATTTACCTCC+TGG | 0.411481 | 8.4:+29442884 | MS.gene012094:CDS |
| CAGTTCCATTGCCTCCTTCT+GGG | 0.414655 | 8.4:+29444266 | MS.gene012094:CDS |
| GCTCGTCTAATGCCCTTAGC+AGG | 0.429377 | 8.4:+29443584 | MS.gene012094:CDS |
| GCTGAAACATCATGCTGAAA+GGG | 0.429786 | 8.4:-29444580 | None:intergenic |
| GAACTATTGGAAGTTGTTGC+CGG | 0.432083 | 8.4:-29443527 | None:intergenic |
| GCAGGAGCAAACAGAGTAGT+TGG | 0.444997 | 8.4:-29443968 | None:intergenic |
| CCTAATTGGCTAGTTGCAGC+TGG | 0.446302 | 8.4:+29443163 | MS.gene012094:CDS |
| GAACCTGAACTTGTTTGATA+AGG | 0.453047 | 8.4:-29444337 | None:intergenic |
| CTGCACCATGTTGCCTAATG+AGG | 0.454748 | 8.4:-29444396 | None:intergenic |
| TCGGGAGCTGGTAACTTCCT+AGG | 0.455316 | 8.4:+29444607 | MS.gene012094:CDS |
| TGCAGATGGGCAAGATAAGC+TGG | 0.457381 | 8.4:+29444414 | MS.gene012094:CDS |
| CCAGATGCCAGAAATGAATC+TGG | 0.461127 | 8.4:-29444196 | None:intergenic |
| TGCAGCTGGGCAAGAAAGTA+GGG | 0.463524 | 8.4:+29443177 | MS.gene012094:CDS |
| TTGACAGGTCTGGGCATATG+AGG | 0.463719 | 8.4:-29444118 | None:intergenic |
| TTGCAGCTGGGCAAGAAAGT+AGG | 0.464157 | 8.4:+29443176 | MS.gene012094:CDS |
| TTGGCACATAACAATAATCA+AGG | 0.464527 | 8.4:+29444481 | MS.gene012094:CDS |
| AAATTCTGTGGCTGAACATT+GGG | 0.466364 | 8.4:-29443491 | None:intergenic |
| TAAGGCTTTGTACTAGCAAT+GGG | 0.468145 | 8.4:-29444319 | None:intergenic |
| CCACATTCCTAAGATAAAAT+GGG | 0.468472 | 8.4:+29442952 | MS.gene012094:CDS |
| CCTCCTCGATGGGAATGATT+GGG | 0.470351 | 8.4:-29443418 | None:intergenic |
| GGAGGAATGGCAGAGGGTCG+GGG | 0.470549 | 8.4:-29443250 | None:intergenic |
| ATCATGCTGAAAGGGGCAAT+CGG | 0.471157 | 8.4:-29444572 | None:intergenic |
| CGGGAGCTGGTAACTTCCTA+GGG | 0.483524 | 8.4:+29444608 | MS.gene012094:CDS |
| AGGTTCAGCATCTGCTGTAA+AGG | 0.486010 | 8.4:+29444354 | MS.gene012094:CDS |
| ATTAGGCAACATGGTGCAGA+TGG | 0.486112 | 8.4:+29444400 | MS.gene012094:CDS |
| CATGATGTTTCAGCTGAGTC+GGG | 0.488953 | 8.4:+29444589 | MS.gene012094:CDS |
| GGGAGAATTGAACCTTTGAT+TGG | 0.489898 | 8.4:-29442931 | None:intergenic |
| ATAAGGCTTTGTACTAGCAA+TGG | 0.495719 | 8.4:-29444320 | None:intergenic |
| GAGTGTAACCATGGAATTTG+AGG | 0.498728 | 8.4:-29443789 | None:intergenic |
| GCATGATGTTTCAGCTGAGT+CGG | 0.505056 | 8.4:+29444588 | MS.gene012094:CDS |
| AGCTGAAACATCATGCTGAA+AGG | 0.506833 | 8.4:-29444581 | None:intergenic |
| AGCTGCAGCCTCTGAAGTTG+TGG | 0.508132 | 8.4:+29443634 | MS.gene012094:CDS |
| CTGCGTCAGCTCCATTGTCT+AGG | 0.513217 | 8.4:+29444038 | MS.gene012094:CDS |
| GGCATATGAGGTTCAGATGT+AGG | 0.520582 | 8.4:-29444106 | None:intergenic |
| CATAGACTCTTCCTCCTCGA+TGG | 0.531139 | 8.4:-29443429 | None:intergenic |
| CAGCAGAAAATTACCGGGAG+AGG | 0.533061 | 8.4:-29442980 | None:intergenic |
| ATGTGAAAATTATTGTTGAC+AGG | 0.534240 | 8.4:-29444133 | None:intergenic |
| CAAATTCTGTGGCTGAACAT+TGG | 0.535118 | 8.4:-29443492 | None:intergenic |
| GTTTCAGCTGAGTCGGGAGC+TGG | 0.537366 | 8.4:+29444595 | MS.gene012094:CDS |
| TAGGAGGAATGGCAGAGGGT+CGG | 0.538274 | 8.4:-29443252 | None:intergenic |
| GGACGAACTTGCAGTGGTGG+CGG | 0.542355 | 8.4:-29443768 | None:intergenic |
| TGTTTCTTTGGATGTAGAAG+AGG | 0.545703 | 8.4:+29443364 | MS.gene012094:CDS |
| GCAAGAAAGTAGGGAGAAAG+AGG | 0.547738 | 8.4:+29443186 | MS.gene012094:CDS |
| GAGCATCTGAGGAGACAGTA+CGG | 0.548380 | 8.4:-29443565 | None:intergenic |
| TGAGGACGAACTTGCAGTGG+TGG | 0.548748 | 8.4:-29443771 | None:intergenic |
| ACTAGAAGATACCCCTGCTA+AGG | 0.549081 | 8.4:-29443597 | None:intergenic |
| GAGAATTTGATCAATGAGCA+TGG | 0.549452 | 8.4:+29443740 | MS.gene012094:CDS |
| AAAATGGGAATGCCCTCTCC+CGG | 0.549517 | 8.4:+29442967 | MS.gene012094:CDS |
| AACTCACACACTAGTTCTGT+GGG | 0.551967 | 8.4:+29443884 | MS.gene012094:CDS |
| AGCATCTGAGGAGACAGTAC+GGG | 0.553864 | 8.4:-29443564 | None:intergenic |
| TCTACATCCAAAGAAACAGA+AGG | 0.555893 | 8.4:-29443359 | None:intergenic |
| GTAGTTGGCTTACCAGATGT+AGG | 0.556554 | 8.4:-29443953 | None:intergenic |
| AGCAGAAAATTACCGGGAGA+GGG | 0.557952 | 8.4:-29442979 | None:intergenic |
| GAACTCACACACTAGTTCTG+TGG | 0.560378 | 8.4:+29443883 | MS.gene012094:CDS |
| GACCCTCTGCCATTCCTCCT+AGG | 0.562137 | 8.4:+29443254 | MS.gene012094:CDS |
| CTCGTCTAATGCCCTTAGCA+GGG | 0.566088 | 8.4:+29443585 | MS.gene012094:CDS |
| GCATTTACTTTAATAGCTCG+AGG | 0.566113 | 8.4:+29444533 | MS.gene012094:CDS |
| AAGTTCGTCCTCAAATTCCA+TGG | 0.568579 | 8.4:+29443781 | MS.gene012094:CDS |
| TTACCTCCTGGGTTCGAAAG+CGG | 0.570253 | 8.4:+29442896 | MS.gene012094:CDS |
| CATTTACTTTAATAGCTCGA+GGG | 0.571255 | 8.4:+29444534 | MS.gene012094:CDS |
| CTAGAAGATACCCCTGCTAA+GGG | 0.572585 | 8.4:-29443596 | None:intergenic |
| ATAGACTCTTCCTCCTCGAT+GGG | 0.574122 | 8.4:-29443428 | None:intergenic |
| AATCTATCGATTTACCTCCT+GGG | 0.575153 | 8.4:+29442885 | MS.gene012094:CDS |
| GATGTAAACAAAGGAACTGA+AGG | 0.576142 | 8.4:-29443836 | None:intergenic |
| AAATGACCGCTTTCGAACCC+AGG | 0.580431 | 8.4:-29442902 | None:intergenic |
| CTGGATACTGGCCTAGACAA+TGG | 0.583361 | 8.4:-29444049 | None:intergenic |
| AGATTCATTTCTGGCATCTG+GGG | 0.584140 | 8.4:+29444198 | MS.gene012094:CDS |
| GGGCATTAGACGAGCATCTG+AGG | 0.586309 | 8.4:-29443576 | None:intergenic |
| TCATTTCCCTAACCAATCAA+AGG | 0.586642 | 8.4:+29442919 | MS.gene012094:CDS |
| TTGCTCATTACTCTTCAAGA+TGG | 0.588692 | 8.4:-29443660 | None:intergenic |
| GATGGCCGCCACAACTTCAG+AGG | 0.592308 | 8.4:-29443642 | None:intergenic |
| TATCTTGGAAGTTACTATGA+CGG | 0.596611 | 8.4:-29444453 | None:intergenic |
| GCCAGAAATGAATCTGGCTG+AGG | 0.596965 | 8.4:-29444190 | None:intergenic |
| TGCAGCCTCTGAAGTTGTGG+CGG | 0.606081 | 8.4:+29443637 | MS.gene012094:CDS |
| CTGAAACATCATGCTGAAAG+GGG | 0.608148 | 8.4:-29444579 | None:intergenic |
| TCCAGAAGTGAGTGTAACCA+TGG | 0.609657 | 8.4:-29443798 | None:intergenic |
| CTAATTGGCTAGTTGCAGCT+GGG | 0.611160 | 8.4:+29443164 | MS.gene012094:CDS |
| TACCTAGGAGGAATGGCAGA+GGG | 0.611350 | 8.4:-29443256 | None:intergenic |
| AGATGAAACTGATGGAATTG+CGG | 0.611754 | 8.4:-29443924 | None:intergenic |
| TTGAAGAGTAATGAGCAAGC+AGG | 0.612567 | 8.4:+29443665 | MS.gene012094:CDS |
| TGGCACATAACAATAATCAA+GGG | 0.613321 | 8.4:+29444482 | MS.gene012094:CDS |
| ATGGGAATGATTGGGATGAG+AGG | 0.616809 | 8.4:-29443410 | None:intergenic |
| GTATGTAATGCAGTTGACAT+TGG | 0.617784 | 8.4:-29444163 | None:intergenic |
| GAATTTGCATCAATACATGC+CGG | 0.618887 | 8.4:+29443508 | MS.gene012094:CDS |
| AAGTTCCCAGAAGGAGGCAA+TGG | 0.626716 | 8.4:-29444271 | None:intergenic |
| ACAGTATGCAAGTTCCCAGA+AGG | 0.630858 | 8.4:-29444280 | None:intergenic |
| GTATGCAAGTTCCCAGAAGG+AGG | 0.631112 | 8.4:-29444277 | None:intergenic |
| TTAGGCAACATGGTGCAGAT+GGG | 0.631526 | 8.4:+29444401 | MS.gene012094:CDS |
| GCATCTGAGGAGACAGTACG+GGG | 0.632228 | 8.4:-29443563 | None:intergenic |
| TTACCTAGGAGGAATGGCAG+AGG | 0.641048 | 8.4:-29443257 | None:intergenic |
| GGCACATAACAATAATCAAG+GGG | 0.641216 | 8.4:+29444483 | MS.gene012094:CDS |
| ATGAGGTTCAGATGTAGGTG+TGG | 0.647403 | 8.4:-29444101 | None:intergenic |
| TCGTCTAATGCCCTTAGCAG+GGG | 0.652307 | 8.4:+29443586 | MS.gene012094:CDS |
| CTACATCCAAAGAAACAGAA+GGG | 0.654763 | 8.4:-29443358 | None:intergenic |
| ATTTACTTTAATAGCTCGAG+GGG | 0.658318 | 8.4:+29444535 | MS.gene012094:CDS |
| ATCTGAGGAGACAGTACGGG+GGG | 0.661328 | 8.4:-29443561 | None:intergenic |
| GAAGACACGATTGAATACGA+TGG | 0.663763 | 8.4:-29443995 | None:intergenic |
| GAGCTGGTAACTTCCTAGGG+GGG | 0.673031 | 8.4:+29444611 | MS.gene012094:CDS |
| CCCAATCATTCCCATCGAGG+AGG | 0.674658 | 8.4:+29443418 | MS.gene012094:CDS |
| ATTTGAGGACGAACTTGCAG+TGG | 0.676325 | 8.4:-29443774 | None:intergenic |
| GGATTGAAAGATGAAACTGA+TGG | 0.677966 | 8.4:-29443932 | None:intergenic |
| GGAGCTGGTAACTTCCTAGG+GGG | 0.677996 | 8.4:+29444610 | MS.gene012094:CDS |
| ATGTATTGATGCAAATTCTG+TGG | 0.682900 | 8.4:-29443503 | None:intergenic |
| TCGAGTGTAGATGTAAACAA+AGG | 0.685704 | 8.4:-29443845 | None:intergenic |
| GTTTACATCTACACTCGATG+TGG | 0.686261 | 8.4:+29443850 | MS.gene012094:CDS |
| CATCCCAATCATTCCCATCG+AGG | 0.693777 | 8.4:+29443415 | MS.gene012094:CDS |
| GGGAGCTGGTAACTTCCTAG+GGG | 0.705156 | 8.4:+29444609 | MS.gene012094:CDS |
| TTTACTTTAATAGCTCGAGG+GGG | 0.714437 | 8.4:+29444536 | MS.gene012094:CDS |
| TGACCGCTTTCGAACCCAGG+AGG | 0.723419 | 8.4:-29442899 | None:intergenic |
| CATCTGAGGAGACAGTACGG+GGG | 0.770239 | 8.4:-29443562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACATATTGCTAACAAA+GGG | - | chr8.4:29443023-29443042 | None:intergenic | 20.0% |
| !! | ACTATTATAAAAACCTCATT+AGG | + | chr8.4:29444383-29444402 | MS.gene012094:CDS | 20.0% |
| !!! | AAATATTCAACATTTTACCT+AGG | - | chr8.4:29443274-29443293 | None:intergenic | 20.0% |
| !!! | ATCAAATTCTCAATCATTTT+TGG | - | chr8.4:29443731-29443750 | None:intergenic | 20.0% |
| !!! | TCAAATTCTCAATCATTTTT+GGG | - | chr8.4:29443730-29443749 | None:intergenic | 20.0% |
| ! | ATGTGAAAATTATTGTTGAC+AGG | - | chr8.4:29444136-29444155 | None:intergenic | 25.0% |
| ! | GAAATACATATTGCTAACAA+AGG | - | chr8.4:29443024-29443043 | None:intergenic | 25.0% |
| ! | TAACTTCCAAGATATGAAAT+TGG | + | chr8.4:29444462-29444481 | MS.gene012094:CDS | 25.0% |
| AAAATTATTGTTGACAGGTC+TGG | - | chr8.4:29444131-29444150 | None:intergenic | 30.0% | |
| AAATTATTGTTGACAGGTCT+GGG | - | chr8.4:29444130-29444149 | None:intergenic | 30.0% | |
| ACAGAAAATGAAACAACACA+AGG | - | chr8.4:29443304-29443323 | None:intergenic | 30.0% | |
| ATAAAAACAGAAGGGGATAT+TGG | - | chr8.4:29444079-29444098 | None:intergenic | 30.0% | |
| ATTTACTTTAATAGCTCGAG+GGG | + | chr8.4:29444535-29444554 | MS.gene012094:CDS | 30.0% | |
| CATTTACTTTAATAGCTCGA+GGG | + | chr8.4:29444534-29444553 | MS.gene012094:CDS | 30.0% | |
| CCACATTCCTAAGATAAAAT+GGG | + | chr8.4:29442952-29442971 | MS.gene012094:CDS | 30.0% | |
| TATCTTGGAAGTTACTATGA+CGG | - | chr8.4:29444456-29444475 | None:intergenic | 30.0% | |
| TATGTGCCAATTTCATATCT+TGG | - | chr8.4:29444471-29444490 | None:intergenic | 30.0% | |
| TGGCACATAACAATAATCAA+GGG | + | chr8.4:29444482-29444501 | MS.gene012094:CDS | 30.0% | |
| TTGGCACATAACAATAATCA+AGG | + | chr8.4:29444481-29444500 | MS.gene012094:CDS | 30.0% | |
| ! | AATTGAACCTTTGATTGGTT+AGG | - | chr8.4:29442929-29442948 | None:intergenic | 30.0% |
| ! | ATGTATTGATGCAAATTCTG+TGG | - | chr8.4:29443506-29443525 | None:intergenic | 30.0% |
| ! | ATTGAACCTTTGATTGGTTA+GGG | - | chr8.4:29442928-29442947 | None:intergenic | 30.0% |
| ! | CCATTTTATCTTAGGAATGT+GGG | - | chr8.4:29442954-29442973 | None:intergenic | 30.0% |
| ! | TATTCAACATTTTACCTAGG+AGG | - | chr8.4:29443271-29443290 | None:intergenic | 30.0% |
| AAAAACCTCATTAGGCAACA+TGG | + | chr8.4:29444391-29444410 | MS.gene012094:CDS | 35.0% | |
| AAATTCTGTGGCTGAACATT+GGG | - | chr8.4:29443494-29443513 | None:intergenic | 35.0% | |
| AACAAGCAGCAGAAAATTAC+CGG | - | chr8.4:29442989-29443008 | None:intergenic | 35.0% | |
| AGATGAAACTGATGGAATTG+CGG | - | chr8.4:29443927-29443946 | None:intergenic | 35.0% | |
| AGTTTGTGTTCAGTCCTAAT+TGG | + | chr8.4:29443149-29443168 | MS.gene012094:intron | 35.0% | |
| ATATTGCTAACAAAGGGTTG+TGG | - | chr8.4:29443017-29443036 | None:intergenic | 35.0% | |
| ATTGAATACGATGGAATTGC+AGG | - | chr8.4:29443989-29444008 | None:intergenic | 35.0% | |
| CATACTCTGCTTTCTTTAAC+TGG | + | chr8.4:29443077-29443096 | MS.gene012094:intron | 35.0% | |
| CCCACATTCCTAAGATAAAA+TGG | + | chr8.4:29442951-29442970 | MS.gene012094:CDS | 35.0% | |
| CTACATCCAAAGAAACAGAA+GGG | - | chr8.4:29443361-29443380 | None:intergenic | 35.0% | |
| GAATTTGCATCAATACATGC+CGG | + | chr8.4:29443508-29443527 | MS.gene012094:CDS | 35.0% | |
| GAGAATTTGATCAATGAGCA+TGG | + | chr8.4:29443740-29443759 | MS.gene012094:CDS | 35.0% | |
| GATGTAAACAAAGGAACTGA+AGG | - | chr8.4:29443839-29443858 | None:intergenic | 35.0% | |
| GCATTTACTTTAATAGCTCG+AGG | + | chr8.4:29444533-29444552 | MS.gene012094:CDS | 35.0% | |
| GGATTGAAAGATGAAACTGA+TGG | - | chr8.4:29443935-29443954 | None:intergenic | 35.0% | |
| GGCACATAACAATAATCAAG+GGG | + | chr8.4:29444483-29444502 | MS.gene012094:CDS | 35.0% | |
| GTATGTAATGCAGTTGACAT+TGG | - | chr8.4:29444166-29444185 | None:intergenic | 35.0% | |
| GTGTGGACATAAAAACAGAA+GGG | - | chr8.4:29444087-29444106 | None:intergenic | 35.0% | |
| TCATCTTTCAATCCTACATC+TGG | + | chr8.4:29443941-29443960 | MS.gene012094:CDS | 35.0% | |
| TCATTTCCCTAACCAATCAA+AGG | + | chr8.4:29442919-29442938 | MS.gene012094:CDS | 35.0% | |
| TCGAGTGTAGATGTAAACAA+AGG | - | chr8.4:29443848-29443867 | None:intergenic | 35.0% | |
| TCTACATCCAAAGAAACAGA+AGG | - | chr8.4:29443362-29443381 | None:intergenic | 35.0% | |
| TGTGGACATAAAAACAGAAG+GGG | - | chr8.4:29444086-29444105 | None:intergenic | 35.0% | |
| TGTTTCTTTGGATGTAGAAG+AGG | + | chr8.4:29443364-29443383 | MS.gene012094:CDS | 35.0% | |
| TTGCTCATTACTCTTCAAGA+TGG | - | chr8.4:29443663-29443682 | None:intergenic | 35.0% | |
| TTTACTTTAATAGCTCGAGG+GGG | + | chr8.4:29444536-29444555 | MS.gene012094:CDS | 35.0% | |
| ! | AACATTTTACCTAGGAGGAA+TGG | - | chr8.4:29443266-29443285 | None:intergenic | 35.0% |
| ! | AAGCCTTATCAAACAAGTTC+AGG | + | chr8.4:29444334-29444353 | MS.gene012094:CDS | 35.0% |
| ! | ATAAGGCTTTGTACTAGCAA+TGG | - | chr8.4:29444323-29444342 | None:intergenic | 35.0% |
| ! | CCCATTTTATCTTAGGAATG+TGG | - | chr8.4:29442955-29442974 | None:intergenic | 35.0% |
| ! | GAACCTGAACTTGTTTGATA+AGG | - | chr8.4:29444340-29444359 | None:intergenic | 35.0% |
| ! | TAAGGCTTTGTACTAGCAAT+GGG | - | chr8.4:29444322-29444341 | None:intergenic | 35.0% |
| !! | AACATTGTTGACTTGCGTTT+GGG | + | chr8.4:29443328-29443347 | MS.gene012094:intron | 35.0% |
| !! | AATCTATCGATTTACCTCCT+GGG | + | chr8.4:29442885-29442904 | MS.gene012094:CDS | 35.0% |
| !! | GATATTGGTTTACTGGATAC+TGG | - | chr8.4:29444064-29444083 | None:intergenic | 35.0% |
| !! | TAACATTGTTGACTTGCGTT+TGG | + | chr8.4:29443327-29443346 | MS.gene012094:intron | 35.0% |
| AAGTTCGTCCTCAAATTCCA+TGG | + | chr8.4:29443781-29443800 | MS.gene012094:CDS | 40.0% | |
| ACAAGCAGCAGAAAATTACC+GGG | - | chr8.4:29442988-29443007 | None:intergenic | 40.0% | |
| AGCTGAAACATCATGCTGAA+AGG | - | chr8.4:29444584-29444603 | None:intergenic | 40.0% | |
| CAAATTCTGTGGCTGAACAT+TGG | - | chr8.4:29443495-29443514 | None:intergenic | 40.0% | |
| CTGAAACATCATGCTGAAAG+GGG | - | chr8.4:29444582-29444601 | None:intergenic | 40.0% | |
| GAACTATTGGAAGTTGTTGC+CGG | - | chr8.4:29443530-29443549 | None:intergenic | 40.0% | |
| GAAGACACGATTGAATACGA+TGG | - | chr8.4:29443998-29444017 | None:intergenic | 40.0% | |
| GAGTGTAACCATGGAATTTG+AGG | - | chr8.4:29443792-29443811 | None:intergenic | 40.0% | |
| GATAAGCTGGACTCACAAAT+AGG | + | chr8.4:29444427-29444446 | MS.gene012094:CDS | 40.0% | |
| GATGAAACTGATGGAATTGC+GGG | - | chr8.4:29443926-29443945 | None:intergenic | 40.0% | |
| GCAAGCAGGCTTAATTGATA+TGG | + | chr8.4:29443679-29443698 | MS.gene012094:CDS | 40.0% | |
| GCTGAAACATCATGCTGAAA+GGG | - | chr8.4:29444583-29444602 | None:intergenic | 40.0% | |
| GGAATTACGGTCTGAACTAT+TGG | - | chr8.4:29443543-29443562 | None:intergenic | 40.0% | |
| GGGAGAATTGAACCTTTGAT+TGG | - | chr8.4:29442934-29442953 | None:intergenic | 40.0% | |
| GGTGTGGACATAAAAACAGA+AGG | - | chr8.4:29444088-29444107 | None:intergenic | 40.0% | |
| GTTTACATCTACACTCGATG+TGG | + | chr8.4:29443850-29443869 | MS.gene012094:CDS | 40.0% | |
| TTCACTGCTGCTGCTAATTT+AGG | - | chr8.4:29443464-29443483 | None:intergenic | 40.0% | |
| TTGAAGAGTAATGAGCAAGC+AGG | + | chr8.4:29443665-29443684 | MS.gene012094:CDS | 40.0% | |
| ! | ATGTAGCCCTTCTGTTTCTT+TGG | + | chr8.4:29443352-29443371 | MS.gene012094:intron | 40.0% |
| ! | GGGCATTCCCATTTTATCTT+AGG | - | chr8.4:29442962-29442981 | None:intergenic | 40.0% |
| !! | AACTCACACACTAGTTCTGT+GGG | + | chr8.4:29443884-29443903 | MS.gene012094:CDS | 40.0% |
| !! | AGAAGGGGATATTGGTTTAC+TGG | - | chr8.4:29444071-29444090 | None:intergenic | 40.0% |
| !! | AGATTCATTTCTGGCATCTG+GGG | + | chr8.4:29444198-29444217 | MS.gene012094:CDS | 40.0% |
| !! | CAGATTCATTTCTGGCATCT+GGG | + | chr8.4:29444197-29444216 | MS.gene012094:CDS | 40.0% |
| !! | GAATCTATCGATTTACCTCC+TGG | + | chr8.4:29442884-29442903 | MS.gene012094:CDS | 40.0% |
| !!! | ACTAGTTCTGTGGGTTTTTC+TGG | + | chr8.4:29443893-29443912 | MS.gene012094:CDS | 40.0% |
| !!! | CTAGTTCTGTGGGTTTTTCT+GGG | + | chr8.4:29443894-29443913 | MS.gene012094:CDS | 40.0% |
| ACAGTATGCAAGTTCCCAGA+AGG | - | chr8.4:29444283-29444302 | None:intergenic | 45.0% | |
| ACTAGAAGATACCCCTGCTA+AGG | - | chr8.4:29443600-29443619 | None:intergenic | 45.0% | |
| AGCAGAAAATTACCGGGAGA+GGG | - | chr8.4:29442982-29443001 | None:intergenic | 45.0% | |
| AGGTTCAGCATCTGCTGTAA+AGG | + | chr8.4:29444354-29444373 | MS.gene012094:CDS | 45.0% | |
| ATAGACTCTTCCTCCTCGAT+GGG | - | chr8.4:29443431-29443450 | None:intergenic | 45.0% | |
| ATCATGCTGAAAGGGGCAAT+CGG | - | chr8.4:29444575-29444594 | None:intergenic | 45.0% | |
| ATGAGGTTCAGATGTAGGTG+TGG | - | chr8.4:29444104-29444123 | None:intergenic | 45.0% | |
| ATGGGAATGATTGGGATGAG+AGG | - | chr8.4:29443413-29443432 | None:intergenic | 45.0% | |
| ATTAGGCAACATGGTGCAGA+TGG | + | chr8.4:29444400-29444419 | MS.gene012094:CDS | 45.0% | |
| ATTTGAGGACGAACTTGCAG+TGG | - | chr8.4:29443777-29443796 | None:intergenic | 45.0% | |
| CATGATGTTTCAGCTGAGTC+GGG | + | chr8.4:29444589-29444608 | MS.gene012094:CDS | 45.0% | |
| CCAGATGCCAGAAATGAATC+TGG | - | chr8.4:29444199-29444218 | None:intergenic | 45.0% | |
| CTAGAAGATACCCCTGCTAA+GGG | - | chr8.4:29443599-29443618 | None:intergenic | 45.0% | |
| GCAAGAAAGTAGGGAGAAAG+AGG | + | chr8.4:29443186-29443205 | MS.gene012094:CDS | 45.0% | |
| GCATGATGTTTCAGCTGAGT+CGG | + | chr8.4:29444588-29444607 | MS.gene012094:CDS | 45.0% | |
| GGCATATGAGGTTCAGATGT+AGG | - | chr8.4:29444109-29444128 | None:intergenic | 45.0% | |
| TCCAGAAGTGAGTGTAACCA+TGG | - | chr8.4:29443801-29443820 | None:intergenic | 45.0% | |
| TCCATGGTTACACTCACTTC+TGG | + | chr8.4:29443797-29443816 | MS.gene012094:CDS | 45.0% | |
| TTAGGCAACATGGTGCAGAT+GGG | + | chr8.4:29444401-29444420 | MS.gene012094:CDS | 45.0% | |
| ! | CTAATTGGCTAGTTGCAGCT+GGG | + | chr8.4:29443164-29443183 | MS.gene012094:CDS | 45.0% |
| ! | GTAGTTGGCTTACCAGATGT+AGG | - | chr8.4:29443956-29443975 | None:intergenic | 45.0% |
| !! | AGCAGGGGTATCTTCTAGTT+TGG | + | chr8.4:29443601-29443620 | MS.gene012094:CDS | 45.0% |
| !! | CCAGATTCATTTCTGGCATC+TGG | + | chr8.4:29444196-29444215 | MS.gene012094:CDS | 45.0% |
| !! | GAACTCACACACTAGTTCTG+TGG | + | chr8.4:29443883-29443902 | MS.gene012094:CDS | 45.0% |
| AAAATGGGAATGCCCTCTCC+CGG | + | chr8.4:29442967-29442986 | MS.gene012094:CDS | 50.0% | |
| AAATGACCGCTTTCGAACCC+AGG | - | chr8.4:29442905-29442924 | None:intergenic | 50.0% | |
| AAGTTCCCAGAAGGAGGCAA+TGG | - | chr8.4:29444274-29444293 | None:intergenic | 50.0% | |
| ACAGTTCCATTGCCTCCTTC+TGG | + | chr8.4:29444265-29444284 | MS.gene012094:CDS | 50.0% | |
| AGACAGTACGGGGGGAATTA+CGG | - | chr8.4:29443556-29443575 | None:intergenic | 50.0% | |
| AGCATCTGAGGAGACAGTAC+GGG | - | chr8.4:29443567-29443586 | None:intergenic | 50.0% | |
| CAGCAGAAAATTACCGGGAG+AGG | - | chr8.4:29442983-29443002 | None:intergenic | 50.0% | |
| CAGTTCCATTGCCTCCTTCT+GGG | + | chr8.4:29444266-29444285 | MS.gene012094:CDS | 50.0% | |
| CATAGACTCTTCCTCCTCGA+TGG | - | chr8.4:29443432-29443451 | None:intergenic | 50.0% | |
| CATCCCAATCATTCCCATCG+AGG | + | chr8.4:29443415-29443434 | MS.gene012094:CDS | 50.0% | |
| CCAGCTGCAACTAGCCAATT+AGG | - | chr8.4:29443166-29443185 | None:intergenic | 50.0% | |
| CCTCCTCGATGGGAATGATT+GGG | - | chr8.4:29443421-29443440 | None:intergenic | 50.0% | |
| CTCGTCTAATGCCCTTAGCA+GGG | + | chr8.4:29443585-29443604 | MS.gene012094:CDS | 50.0% | |
| CTGCACCATGTTGCCTAATG+AGG | - | chr8.4:29444399-29444418 | None:intergenic | 50.0% | |
| GAGCATCTGAGGAGACAGTA+CGG | - | chr8.4:29443568-29443587 | None:intergenic | 50.0% | |
| GCAGGAGCAAACAGAGTAGT+TGG | - | chr8.4:29443971-29443990 | None:intergenic | 50.0% | |
| GCCAGAAATGAATCTGGCTG+AGG | - | chr8.4:29444193-29444212 | None:intergenic | 50.0% | |
| GCCTCAGCCAGATTCATTTC+TGG | + | chr8.4:29444189-29444208 | MS.gene012094:CDS | 50.0% | |
| GTATGCAAGTTCCCAGAAGG+AGG | - | chr8.4:29444280-29444299 | None:intergenic | 50.0% | |
| TACCTAGGAGGAATGGCAGA+GGG | - | chr8.4:29443259-29443278 | None:intergenic | 50.0% | |
| TCCTCCTCGATGGGAATGAT+TGG | - | chr8.4:29443422-29443441 | None:intergenic | 50.0% | |
| TCGTCTAATGCCCTTAGCAG+GGG | + | chr8.4:29443586-29443605 | MS.gene012094:CDS | 50.0% | |
| TGCAGATGGGCAAGATAAGC+TGG | + | chr8.4:29444414-29444433 | MS.gene012094:CDS | 50.0% | |
| TGCAGCTGGGCAAGAAAGTA+GGG | + | chr8.4:29443177-29443196 | MS.gene012094:CDS | 50.0% | |
| TTACCTAGGAGGAATGGCAG+AGG | - | chr8.4:29443260-29443279 | None:intergenic | 50.0% | |
| TTACCTCCTGGGTTCGAAAG+CGG | + | chr8.4:29442896-29442915 | MS.gene012094:CDS | 50.0% | |
| TTGACAGGTCTGGGCATATG+AGG | - | chr8.4:29444121-29444140 | None:intergenic | 50.0% | |
| TTGCAGCTGGGCAAGAAAGT+AGG | + | chr8.4:29443176-29443195 | MS.gene012094:CDS | 50.0% | |
| ! | CCTAATTGGCTAGTTGCAGC+TGG | + | chr8.4:29443163-29443182 | MS.gene012094:CDS | 50.0% |
| ! | CTGGATACTGGCCTAGACAA+TGG | - | chr8.4:29444052-29444071 | None:intergenic | 50.0% |
| AATGGAGCTGACGCAGTTGC+TGG | - | chr8.4:29444034-29444053 | None:intergenic | 55.0% | |
| ATCTGAGGAGACAGTACGGG+GGG | - | chr8.4:29443564-29443583 | None:intergenic | 55.0% | |
| CACTCGATGTGGCAGCTTCT+AGG | + | chr8.4:29443861-29443880 | MS.gene012094:CDS | 55.0% | |
| CATCTGAGGAGACAGTACGG+GGG | - | chr8.4:29443565-29443584 | None:intergenic | 55.0% | |
| CCCAATCATTCCCATCGAGG+AGG | + | chr8.4:29443418-29443437 | MS.gene012094:CDS | 55.0% | |
| CGGGAGCTGGTAACTTCCTA+GGG | + | chr8.4:29444608-29444627 | MS.gene012094:CDS | 55.0% | |
| CTGCGTCAGCTCCATTGTCT+AGG | + | chr8.4:29444038-29444057 | MS.gene012094:CDS | 55.0% | |
| GAGCTGGTAACTTCCTAGGG+GGG | + | chr8.4:29444611-29444630 | MS.gene012094:CDS | 55.0% | |
| GCATCTGAGGAGACAGTACG+GGG | - | chr8.4:29443566-29443585 | None:intergenic | 55.0% | |
| GCTCGTCTAATGCCCTTAGC+AGG | + | chr8.4:29443584-29443603 | MS.gene012094:CDS | 55.0% | |
| GGAGCTGGTAACTTCCTAGG+GGG | + | chr8.4:29444610-29444629 | MS.gene012094:CDS | 55.0% | |
| GGGAGCTGGTAACTTCCTAG+GGG | + | chr8.4:29444609-29444628 | MS.gene012094:CDS | 55.0% | |
| GGGCATTAGACGAGCATCTG+AGG | - | chr8.4:29443579-29443598 | None:intergenic | 55.0% | |
| TAGGAGGAATGGCAGAGGGT+CGG | - | chr8.4:29443255-29443274 | None:intergenic | 55.0% | |
| TCGGGAGCTGGTAACTTCCT+AGG | + | chr8.4:29444607-29444626 | MS.gene012094:CDS | 55.0% | |
| TGAGGACGAACTTGCAGTGG+TGG | - | chr8.4:29443774-29443793 | None:intergenic | 55.0% | |
| ! | TTAATAGCTCGAGGGGGTGC+AGG | + | chr8.4:29444542-29444561 | MS.gene012094:CDS | 55.0% |
| ! | TTTTAGCACTCTGCCCCCCT+AGG | - | chr8.4:29444627-29444646 | None:intergenic | 55.0% |
| !! | AGCTGCAGCCTCTGAAGTTG+TGG | + | chr8.4:29443634-29443653 | MS.gene012094:CDS | 55.0% |
| !! | TGCAGCCTCTGAAGTTGTGG+CGG | + | chr8.4:29443637-29443656 | MS.gene012094:CDS | 55.0% |
| AGGAGGAATGGCAGAGGGTC+GGG | - | chr8.4:29443254-29443273 | None:intergenic | 60.0% | |
| GACCCTCTGCCATTCCTCCT+AGG | + | chr8.4:29443254-29443273 | MS.gene012094:CDS | 60.0% | |
| GATGGCCGCCACAACTTCAG+AGG | - | chr8.4:29443645-29443664 | None:intergenic | 60.0% | |
| GGACGAACTTGCAGTGGTGG+CGG | - | chr8.4:29443771-29443790 | None:intergenic | 60.0% | |
| GTTTCAGCTGAGTCGGGAGC+TGG | + | chr8.4:29444595-29444614 | MS.gene012094:CDS | 60.0% | |
| TGACCGCTTTCGAACCCAGG+AGG | - | chr8.4:29442902-29442921 | None:intergenic | 60.0% | |
| GGAGGAATGGCAGAGGGTCG+GGG | - | chr8.4:29443253-29443272 | None:intergenic | 65.0% | |
| ! | AGCTCGAGGGGGTGCAGGAA+TGG | + | chr8.4:29444547-29444566 | MS.gene012094:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 29442863 | 29444660 | 29442863 | ID=MS.gene012094 |
| chr8.4 | mRNA | 29442863 | 29444660 | 29442863 | ID=MS.gene012094.t1;Parent=MS.gene012094 |
| chr8.4 | exon | 29442863 | 29442988 | 29442863 | ID=MS.gene012094.t1.exon1;Parent=MS.gene012094.t1 |
| chr8.4 | CDS | 29442863 | 29442988 | 29442863 | ID=cds.MS.gene012094.t1;Parent=MS.gene012094.t1 |
| chr8.4 | exon | 29443151 | 29443275 | 29443151 | ID=MS.gene012094.t1.exon2;Parent=MS.gene012094.t1 |
| chr8.4 | CDS | 29443151 | 29443275 | 29443151 | ID=cds.MS.gene012094.t1;Parent=MS.gene012094.t1 |
| chr8.4 | exon | 29443358 | 29444660 | 29443358 | ID=MS.gene012094.t1.exon3;Parent=MS.gene012094.t1 |
| chr8.4 | CDS | 29443358 | 29444660 | 29443358 | ID=cds.MS.gene012094.t1;Parent=MS.gene012094.t1 |
| Gene Sequence |
| Protein sequence |
