Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012289.t1 | KEH32529.1 | 86 | 328 | 37 | 4 | 1 | 320 | 1 | 327 | 1.90E-134 | 488.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012289.t1 | Q9SZI6 | 35.1 | 359 | 166 | 10 | 14 | 320 | 9 | 352 | 3.1e-24 | 114.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012289.t1 | A0A072URU2 | 86.0 | 328 | 37 | 4 | 1 | 320 | 1 | 327 | 1.4e-134 | 488.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene012289.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012289.t1 | MTR_4g126350 | 91.768 | 328 | 18 | 4 | 1 | 320 | 1 | 327 | 0.0 | 520 |
MS.gene012289.t1 | MTR_2g038720 | 45.897 | 329 | 131 | 14 | 1 | 320 | 1 | 291 | 6.47e-47 | 160 |
MS.gene012289.t1 | MTR_1g016170 | 44.667 | 150 | 58 | 6 | 122 | 249 | 108 | 254 | 1.07e-25 | 104 |
MS.gene012289.t1 | MTR_4g121110 | 33.784 | 148 | 72 | 4 | 172 | 319 | 22 | 143 | 3.55e-17 | 77.4 |
MS.gene012289.t1 | MTR_7g112330 | 75.000 | 36 | 9 | 0 | 180 | 215 | 22 | 57 | 2.17e-14 | 69.3 |
MS.gene012289.t1 | MTR_5g020230 | 53.448 | 58 | 27 | 0 | 159 | 216 | 101 | 158 | 5.05e-14 | 70.9 |
MS.gene012289.t1 | MTR_8g077510 | 70.270 | 37 | 11 | 0 | 180 | 216 | 125 | 161 | 1.85e-12 | 66.2 |
MS.gene012289.t1 | MTR_1g116010 | 39.506 | 81 | 42 | 2 | 174 | 249 | 158 | 236 | 9.39e-12 | 64.3 |
MS.gene012289.t1 | MTR_2g094600 | 46.377 | 69 | 36 | 1 | 148 | 215 | 183 | 251 | 4.11e-11 | 63.2 |
MS.gene012289.t1 | MTR_5g021340 | 40.244 | 82 | 44 | 2 | 180 | 258 | 300 | 379 | 5.19e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012289.t1 | AT4G26150 | 42.105 | 247 | 117 | 6 | 91 | 320 | 115 | 352 | 1.62e-38 | 140 |
MS.gene012289.t1 | AT5G56860 | 35.938 | 256 | 107 | 9 | 14 | 213 | 9 | 263 | 1.45e-22 | 97.4 |
MS.gene012289.t1 | AT5G49300 | 36.424 | 151 | 57 | 4 | 169 | 319 | 27 | 138 | 6.95e-18 | 79.3 |
MS.gene012289.t1 | AT5G26930 | 75.610 | 41 | 10 | 0 | 177 | 217 | 23 | 63 | 4.03e-17 | 76.6 |
MS.gene012289.t1 | AT3G06740 | 37.778 | 135 | 51 | 5 | 182 | 316 | 43 | 144 | 1.57e-15 | 73.2 |
MS.gene012289.t1 | AT4G36620 | 50.769 | 65 | 25 | 1 | 180 | 237 | 75 | 139 | 7.82e-15 | 72.8 |
MS.gene012289.t1 | AT3G50870 | 63.265 | 49 | 17 | 1 | 180 | 227 | 152 | 200 | 3.49e-14 | 72.4 |
MS.gene012289.t1 | AT3G16870 | 70.000 | 40 | 12 | 0 | 178 | 217 | 40 | 79 | 9.10e-14 | 69.3 |
MS.gene012289.t1 | AT4G16141 | 67.500 | 40 | 13 | 0 | 178 | 217 | 35 | 74 | 1.74e-13 | 68.6 |
MS.gene012289.t1 | AT2G18380 | 66.667 | 45 | 14 | 1 | 176 | 219 | 88 | 132 | 2.14e-13 | 68.6 |
MS.gene012289.t1 | AT1G08010 | 39.773 | 88 | 50 | 2 | 172 | 259 | 212 | 296 | 5.91e-13 | 68.6 |
MS.gene012289.t1 | AT1G08010 | 39.773 | 88 | 50 | 2 | 172 | 259 | 212 | 296 | 5.91e-13 | 68.6 |
MS.gene012289.t1 | AT1G08010 | 39.773 | 88 | 50 | 2 | 172 | 259 | 212 | 296 | 5.91e-13 | 68.6 |
MS.gene012289.t1 | AT1G08000 | 38.636 | 88 | 50 | 2 | 172 | 259 | 210 | 293 | 2.90e-12 | 66.6 |
MS.gene012289.t1 | AT1G08000 | 38.636 | 88 | 50 | 2 | 172 | 259 | 210 | 293 | 2.90e-12 | 66.6 |
Find 59 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATAATTATTCAACTATT+AGG | 0.137638 | 8.4:-8490166 | MS.gene012289:CDS |
TGAACAATCAAACTCAATTT+TGG | 0.139942 | 8.4:+8489625 | None:intergenic |
ATTAAGCTTGAGTGAGAATT+TGG | 0.175716 | 8.4:-8489516 | MS.gene012289:CDS |
CTTCTCATGGCGTTATCTTA+TGG | 0.189112 | 8.4:-8489449 | MS.gene012289:CDS |
GAAAATGAAGAAGAAGAATT+TGG | 0.264622 | 8.4:+8490731 | None:intergenic |
GCTGCTGCAGCATCGGCAAT+TGG | 0.307111 | 8.4:-8489716 | MS.gene012289:CDS |
CAATAATTATTCAACTATTA+GGG | 0.315780 | 8.4:-8490165 | MS.gene012289:CDS |
TGATCTTGATTAAGATCAAT+AGG | 0.353074 | 8.4:+8490773 | None:intergenic |
TTGCAGCCTCTCTCTCATCC+TGG | 0.357986 | 8.4:+8489474 | None:intergenic |
TGCAGCCTCTCTCTCATCCT+GGG | 0.415909 | 8.4:+8489475 | None:intergenic |
ATGTATACCTTTGGGCCTCT+TGG | 0.416802 | 8.4:+8490095 | None:intergenic |
CATGTGGTAAGTTGTTTGTT+TGG | 0.417311 | 8.4:+8490639 | None:intergenic |
TTAAGCTTGAGTGAGAATTT+GGG | 0.418107 | 8.4:-8489515 | MS.gene012289:CDS |
ACACCACTAAGACCCCTCTA+TGG | 0.423028 | 8.4:-8490127 | MS.gene012289:CDS |
CTTGATCTTGTGAGTCTAAG+AGG | 0.434136 | 8.4:+8490684 | None:intergenic |
AAGGAAGGCAAGACGTGCTC+TGG | 0.435345 | 8.4:-8489741 | MS.gene012289:CDS |
CCTCCATAGAGGGGTCTTAG+TGG | 0.441426 | 8.4:+8490124 | None:intergenic |
GATGATGGTTTCTGATCAAA+CGG | 0.456924 | 8.4:-8490279 | MS.gene012289:CDS |
TTGGTCCACTCCTCCATAGA+GGG | 0.468086 | 8.4:+8490114 | None:intergenic |
TTTGTTTGGCAGTAATAAGA+TGG | 0.481929 | 8.4:+8490653 | None:intergenic |
AAGAAGAATTTGGACTAGAA+AGG | 0.497380 | 8.4:+8490741 | None:intergenic |
TTATCTTATGGATTAGTCCA+TGG | 0.502722 | 8.4:-8489437 | MS.gene012289:CDS |
ATATTCACTCAAGTGGATCA+TGG | 0.512325 | 8.4:-8490469 | MS.gene012289:CDS |
GAGAATAATGAAGAAGATGA+TGG | 0.517661 | 8.4:-8490294 | MS.gene012289:CDS |
TCTGGCTGCTGCTGCAGCAT+CGG | 0.517772 | 8.4:-8489723 | MS.gene012289:CDS |
CTTGGTCCACTCCTCCATAG+AGG | 0.517925 | 8.4:+8490113 | None:intergenic |
TGATCTTAATTAGGTTGAGA+AGG | 0.524769 | 8.4:-8490495 | MS.gene012289:intron |
TACTTTACCTCTTGATCATG+TGG | 0.541831 | 8.4:+8490623 | None:intergenic |
AACACAAGCTGACAATTCGT+TGG | 0.542076 | 8.4:-8490406 | MS.gene012289:CDS |
AAGGTTAATATTCACTCAAG+TGG | 0.542101 | 8.4:-8490476 | MS.gene012289:CDS |
CAGTCACTTTGCAACGCATG+TGG | 0.556816 | 8.4:-8489773 | MS.gene012289:CDS |
AATTTGGACTAGAAAGGTCA+TGG | 0.556899 | 8.4:+8490747 | None:intergenic |
CAACTTACCACATGATCAAG+AGG | 0.559110 | 8.4:-8490630 | MS.gene012289:intron |
GCAGCCTCTCTCTCATCCTG+GGG | 0.567150 | 8.4:+8489476 | None:intergenic |
AGAGGCTGCAATCCTTCTCA+TGG | 0.574547 | 8.4:-8489462 | MS.gene012289:CDS |
ATGATGGTTTCTGATCAAAC+GGG | 0.587005 | 8.4:-8490278 | MS.gene012289:CDS |
ATGTGGGATTAGACAAAGGA+AGG | 0.591436 | 8.4:-8489756 | MS.gene012289:CDS |
CTGCTATTATCTGTTCCTTG+TGG | 0.602551 | 8.4:+8490191 | None:intergenic |
TGATCATGAGGATGGTACTT+CGG | 0.612710 | 8.4:-8490339 | MS.gene012289:CDS |
CAAGAAGCTGATCATGAGGA+TGG | 0.614482 | 8.4:-8490347 | MS.gene012289:CDS |
AGGATGGTACTTCGGTGAAG+TGG | 0.614786 | 8.4:-8490331 | MS.gene012289:CDS |
TTGATCTTGTGAGTCTAAGA+GGG | 0.615407 | 8.4:+8490685 | None:intergenic |
CATAAGATAACGCCATGAGA+AGG | 0.615895 | 8.4:+8489450 | None:intergenic |
TAATCAAGAAGCTGATCATG+AGG | 0.617008 | 8.4:-8490351 | MS.gene012289:CDS |
GAGTGGACCAAGAGGCCCAA+AGG | 0.618470 | 8.4:-8490102 | MS.gene012289:intron |
CAATGAACTAAGCTCAACCA+TGG | 0.619076 | 8.4:+8489420 | None:intergenic |
TCTGTTCCTTGTGGTGACAG+TGG | 0.621928 | 8.4:+8490200 | None:intergenic |
ATGACGGACGAAGATAGATA+AGG | 0.632473 | 8.4:+8490797 | None:intergenic |
ATTAAGATCAATAGGCATGA+CGG | 0.633382 | 8.4:+8490781 | None:intergenic |
TGGTCCACTCCTCCATAGAG+GGG | 0.635988 | 8.4:+8490115 | None:intergenic |
AAGACCCCTCTATGGAGGAG+TGG | 0.638844 | 8.4:-8490119 | MS.gene012289:CDS |
GACGAAGATAGATAAGGTGG+TGG | 0.639273 | 8.4:+8490803 | None:intergenic |
CCACTAAGACCCCTCTATGG+AGG | 0.641407 | 8.4:-8490124 | MS.gene012289:CDS |
AGTCACTTTGCAACGCATGT+GGG | 0.651862 | 8.4:-8489772 | MS.gene012289:CDS |
AAGCAACCACTGTCACCACA+AGG | 0.654177 | 8.4:-8490206 | MS.gene012289:CDS |
ACGGACGAAGATAGATAAGG+TGG | 0.673417 | 8.4:+8490800 | None:intergenic |
ACGCATGTGGGATTAGACAA+AGG | 0.678808 | 8.4:-8489760 | MS.gene012289:CDS |
CAGCCTCTCTCTCATCCTGG+GGG | 0.685188 | 8.4:+8489477 | None:intergenic |
CTATGGAGGAGTGGACCAAG+AGG | 0.688009 | 8.4:-8490110 | MS.gene012289:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAATTTTATTTTTTATAA+AGG | + | chr8.4:8490191-8490210 | None:intergenic | 0.0% |
!!! | TTAATTTTATTTTTTATAAA+GGG | + | chr8.4:8490190-8490209 | None:intergenic | 0.0% |
!! | AAAATGTTTATTTATTTGTC+AGG | - | chr8.4:8490338-8490357 | MS.gene012289:CDS | 15.0% |
!! | AAATTAATAAAGTATAGGTT+TGG | - | chr8.4:8490203-8490222 | MS.gene012289:CDS | 15.0% |
!! | ACATCATCAAATTAATTAAA+GGG | + | chr8.4:8489728-8489747 | None:intergenic | 15.0% |
!! | CAATAATTATTCAACTATTA+GGG | - | chr8.4:8490077-8490096 | MS.gene012289:intron | 15.0% |
!!! | ATTTTATTTTTTATAAAGGG+TGG | + | chr8.4:8490187-8490206 | None:intergenic | 15.0% |
!! | ATCATATATATGTATACCTT+TGG | + | chr8.4:8490159-8490178 | None:intergenic | 20.0% |
!! | CACATCATCAAATTAATTAA+AGG | + | chr8.4:8489729-8489748 | None:intergenic | 20.0% |
!! | CATCATCAAATTAATTAAAG+GGG | + | chr8.4:8489727-8489746 | None:intergenic | 20.0% |
!! | GCAATAATTATTCAACTATT+AGG | - | chr8.4:8490076-8490095 | MS.gene012289:intron | 20.0% |
!! | GTTGAATTGAATCTTTAATT+TGG | + | chr8.4:8490245-8490264 | None:intergenic | 20.0% |
!! | TCATATATATGTATACCTTT+GGG | + | chr8.4:8490158-8490177 | None:intergenic | 20.0% |
!! | TTATAATTACGAATCAAACT+CGG | - | chr8.4:8490293-8490312 | MS.gene012289:CDS | 20.0% |
!!! | AATACAAAGTGATTGTTTTA+GGG | + | chr8.4:8490267-8490286 | None:intergenic | 20.0% |
!!! | TAATACAAAGTGATTGTTTT+AGG | + | chr8.4:8490268-8490287 | None:intergenic | 20.0% |
!!! | TATTTTGCTAATAACTTTGA+TGG | - | chr8.4:8490436-8490455 | MS.gene012289:CDS | 20.0% |
!!! | TTTAGAACGTTGTAAATTTA+GGG | + | chr8.4:8490321-8490340 | None:intergenic | 20.0% |
!!! | TTTTAGAACGTTGTAAATTT+AGG | + | chr8.4:8490322-8490341 | None:intergenic | 20.0% |
! | AATTAATTAAAGGGGATCAA+AGG | + | chr8.4:8489719-8489738 | None:intergenic | 25.0% |
! | GAAAATGAAGAAGAAGAATT+TGG | + | chr8.4:8489514-8489533 | None:intergenic | 25.0% |
! | TGATCTTGATTAAGATCAAT+AGG | + | chr8.4:8489472-8489491 | None:intergenic | 25.0% |
!! | TGAACAATCAAACTCAATTT+TGG | + | chr8.4:8490620-8490639 | None:intergenic | 25.0% |
!!! | AAAAGAGTTTATCACTTTTG+AGG | - | chr8.4:8490696-8490715 | MS.gene012289:CDS | 25.0% |
!!! | GAATTGAATCTTTAATTTGG+AGG | + | chr8.4:8490242-8490261 | None:intergenic | 25.0% |
!!! | TATTAGTATTAGTGCTACTT+AGG | - | chr8.4:8490382-8490401 | MS.gene012289:CDS | 25.0% |
!!! | TTGATGATGTGATCTTAATT+AGG | - | chr8.4:8489738-8489757 | MS.gene012289:CDS | 25.0% |
AAGGTTAATATTCACTCAAG+TGG | - | chr8.4:8489766-8489785 | MS.gene012289:CDS | 30.0% | |
ATTAAGATCAATAGGCATGA+CGG | + | chr8.4:8489464-8489483 | None:intergenic | 30.0% | |
ATTAAGCTTGAGTGAGAATT+TGG | - | chr8.4:8490726-8490745 | MS.gene012289:CDS | 30.0% | |
GAGAATAATGAAGAAGATGA+TGG | - | chr8.4:8489948-8489967 | MS.gene012289:intron | 30.0% | |
TTAAGCTTGAGTGAGAATTT+GGG | - | chr8.4:8490727-8490746 | MS.gene012289:CDS | 30.0% | |
TTTGTTTGGCAGTAATAAGA+TGG | + | chr8.4:8489592-8489611 | None:intergenic | 30.0% | |
! | AAGAAGAATTTGGACTAGAA+AGG | + | chr8.4:8489504-8489523 | None:intergenic | 30.0% |
!! | CTTTAATTTGGAGGTTTCTA+GGG | + | chr8.4:8490233-8490252 | None:intergenic | 30.0% |
!! | TCTTTAATTTGGAGGTTTCT+AGG | + | chr8.4:8490234-8490253 | None:intergenic | 30.0% |
!! | TGATCTTAATTAGGTTGAGA+AGG | - | chr8.4:8489747-8489766 | MS.gene012289:CDS | 30.0% |
!! | TTATCTTATGGATTAGTCCA+TGG | - | chr8.4:8490805-8490824 | MS.gene012289:CDS | 30.0% |
!!! | GTTTAGTCTTGTAGTTTTCA+TGG | + | chr8.4:8489819-8489838 | None:intergenic | 30.0% |
!!! | TCTTTTCTAGTTTGATGAGA+TGG | + | chr8.4:8490682-8490701 | None:intergenic | 30.0% |
ATATTCACTCAAGTGGATCA+TGG | - | chr8.4:8489773-8489792 | MS.gene012289:CDS | 35.0% | |
ATGATGGTTTCTGATCAAAC+GGG | - | chr8.4:8489964-8489983 | MS.gene012289:intron | 35.0% | |
CATGTGGTAAGTTGTTTGTT+TGG | + | chr8.4:8489606-8489625 | None:intergenic | 35.0% | |
TAATCAAGAAGCTGATCATG+AGG | - | chr8.4:8489891-8489910 | MS.gene012289:intron | 35.0% | |
TAATTAAAGGGGATCAAAGG+TGG | + | chr8.4:8489716-8489735 | None:intergenic | 35.0% | |
TACTTTACCTCTTGATCATG+TGG | + | chr8.4:8489622-8489641 | None:intergenic | 35.0% | |
TTGATCTTGTGAGTCTAAGA+GGG | + | chr8.4:8489560-8489579 | None:intergenic | 35.0% | |
! | AATTTGGACTAGAAAGGTCA+TGG | + | chr8.4:8489498-8489517 | None:intergenic | 35.0% |
! | GATGATGGTTTCTGATCAAA+CGG | - | chr8.4:8489963-8489982 | MS.gene012289:intron | 35.0% |
AACACAAGCTGACAATTCGT+TGG | - | chr8.4:8489836-8489855 | MS.gene012289:intron | 40.0% | |
ATGTGGGATTAGACAAAGGA+AGG | - | chr8.4:8490486-8490505 | MS.gene012289:intron | 40.0% | |
CAACTTACCACATGATCAAG+AGG | - | chr8.4:8489612-8489631 | MS.gene012289:CDS | 40.0% | |
CATAAGATAACGCCATGAGA+AGG | + | chr8.4:8490795-8490814 | None:intergenic | 40.0% | |
CTGCTATTATCTGTTCCTTG+TGG | + | chr8.4:8490054-8490073 | None:intergenic | 40.0% | |
CTTCTCATGGCGTTATCTTA+TGG | - | chr8.4:8490793-8490812 | MS.gene012289:CDS | 40.0% | |
CTTGATCTTGTGAGTCTAAG+AGG | + | chr8.4:8489561-8489580 | None:intergenic | 40.0% | |
TGATCATGAGGATGGTACTT+CGG | - | chr8.4:8489903-8489922 | MS.gene012289:intron | 40.0% | |
!! | ATGACGGACGAAGATAGATA+AGG | + | chr8.4:8489448-8489467 | None:intergenic | 40.0% |
ACGCATGTGGGATTAGACAA+AGG | - | chr8.4:8490482-8490501 | MS.gene012289:CDS | 45.0% | |
ACGGACGAAGATAGATAAGG+TGG | + | chr8.4:8489445-8489464 | None:intergenic | 45.0% | |
ATGTATACCTTTGGGCCTCT+TGG | + | chr8.4:8490150-8490169 | None:intergenic | 45.0% | |
CAAGAAGCTGATCATGAGGA+TGG | - | chr8.4:8489895-8489914 | MS.gene012289:intron | 45.0% | |
GACGAAGATAGATAAGGTGG+TGG | + | chr8.4:8489442-8489461 | None:intergenic | 45.0% | |
! | AGTCACTTTGCAACGCATGT+GGG | - | chr8.4:8490470-8490489 | MS.gene012289:CDS | 45.0% |
! | TGTTCAACAAGTTTTCCCCC+AGG | - | chr8.4:8490750-8490769 | MS.gene012289:CDS | 45.0% |
!! | AAATAAAATTAATAAAGTAT+AGG | - | chr8.4:8490198-8490217 | MS.gene012289:CDS | 5.0% |
AAGCAACCACTGTCACCACA+AGG | - | chr8.4:8490036-8490055 | MS.gene012289:intron | 50.0% | |
ACACCACTAAGACCCCTCTA+TGG | - | chr8.4:8490115-8490134 | MS.gene012289:CDS | 50.0% | |
AGAGGCTGCAATCCTTCTCA+TGG | - | chr8.4:8490780-8490799 | MS.gene012289:CDS | 50.0% | |
AGGATGGTACTTCGGTGAAG+TGG | - | chr8.4:8489911-8489930 | MS.gene012289:intron | 50.0% | |
TCTGTTCCTTGTGGTGACAG+TGG | + | chr8.4:8490045-8490064 | None:intergenic | 50.0% | |
TTGGTCCACTCCTCCATAGA+GGG | + | chr8.4:8490131-8490150 | None:intergenic | 50.0% | |
! | CAGTCACTTTGCAACGCATG+TGG | - | chr8.4:8490469-8490488 | MS.gene012289:CDS | 50.0% |
AAGACCCCTCTATGGAGGAG+TGG | - | chr8.4:8490123-8490142 | MS.gene012289:CDS | 55.0% | |
AAGGAAGGCAAGACGTGCTC+TGG | - | chr8.4:8490501-8490520 | MS.gene012289:intron | 55.0% | |
CCACTAAGACCCCTCTATGG+AGG | - | chr8.4:8490118-8490137 | MS.gene012289:CDS | 55.0% | |
CCTCCATAGAGGGGTCTTAG+TGG | + | chr8.4:8490121-8490140 | None:intergenic | 55.0% | |
CTATGGAGGAGTGGACCAAG+AGG | - | chr8.4:8490132-8490151 | MS.gene012289:CDS | 55.0% | |
CTTGGTCCACTCCTCCATAG+AGG | + | chr8.4:8490132-8490151 | None:intergenic | 55.0% | |
TGCAGCCTCTCTCTCATCCT+GGG | + | chr8.4:8490770-8490789 | None:intergenic | 55.0% | |
TGGTCCACTCCTCCATAGAG+GGG | + | chr8.4:8490130-8490149 | None:intergenic | 55.0% | |
TTGCAGCCTCTCTCTCATCC+TGG | + | chr8.4:8490771-8490790 | None:intergenic | 55.0% | |
TTTCCCCCAGGATGAGAGAG+AGG | - | chr8.4:8490762-8490781 | MS.gene012289:CDS | 55.0% | |
CAGCCTCTCTCTCATCCTGG+GGG | + | chr8.4:8490768-8490787 | None:intergenic | 60.0% | |
GAGTGGACCAAGAGGCCCAA+AGG | - | chr8.4:8490140-8490159 | MS.gene012289:CDS | 60.0% | |
GCAGCCTCTCTCTCATCCTG+GGG | + | chr8.4:8490769-8490788 | None:intergenic | 60.0% | |
TCTGGCTGCTGCTGCAGCAT+CGG | - | chr8.4:8490519-8490538 | MS.gene012289:intron | 60.0% | |
!! | GCTGCTGCAGCATCGGCAAT+TGG | - | chr8.4:8490526-8490545 | MS.gene012289:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 8489433 | 8490831 | 8489433 | ID=MS.gene012289 |
chr8.4 | mRNA | 8489433 | 8490831 | 8489433 | ID=MS.gene012289.t1;Parent=MS.gene012289 |
chr8.4 | exon | 8490631 | 8490831 | 8490631 | ID=MS.gene012289.t1.exon1;Parent=MS.gene012289.t1 |
chr8.4 | CDS | 8490631 | 8490831 | 8490631 | ID=cds.MS.gene012289.t1;Parent=MS.gene012289.t1 |
chr8.4 | exon | 8490103 | 8490504 | 8490103 | ID=MS.gene012289.t1.exon2;Parent=MS.gene012289.t1 |
chr8.4 | CDS | 8490103 | 8490504 | 8490103 | ID=cds.MS.gene012289.t1;Parent=MS.gene012289.t1 |
chr8.4 | exon | 8489433 | 8489792 | 8489433 | ID=MS.gene012289.t1.exon3;Parent=MS.gene012289.t1 |
chr8.4 | CDS | 8489433 | 8489792 | 8489433 | ID=cds.MS.gene012289.t1;Parent=MS.gene012289.t1 |
Gene Sequence |
Protein sequence |