Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012342.t1 | RHN64690.1 | 93.8 | 195 | 11 | 1 | 1 | 194 | 184 | 378 | 3.50E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012342.t1 | Q9LU68 | 46.8 | 220 | 81 | 7 | 2 | 194 | 209 | 419 | 6.7e-30 | 132.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012342.t1 | G7JUA6 | 93.8 | 195 | 11 | 1 | 1 | 194 | 184 | 378 | 2.6e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012342.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012342.t1 | MTR_4g127420 | 98.462 | 195 | 2 | 1 | 1 | 194 | 184 | 378 | 1.52e-137 | 389 |
| MS.gene012342.t1 | MTR_5g072780 | 47.009 | 117 | 57 | 3 | 78 | 194 | 99 | 210 | 1.51e-22 | 90.9 |
| MS.gene012342.t1 | MTR_7g032240 | 34.783 | 161 | 67 | 5 | 69 | 194 | 188 | 345 | 2.06e-18 | 82.0 |
| MS.gene012342.t1 | MTR_1g110870 | 44.444 | 108 | 48 | 4 | 99 | 194 | 311 | 418 | 3.79e-17 | 79.0 |
| MS.gene012342.t1 | MTR_8g104190 | 42.727 | 110 | 35 | 3 | 105 | 194 | 293 | 394 | 9.98e-16 | 74.7 |
| MS.gene012342.t1 | MTR_2g038010 | 40.541 | 111 | 48 | 4 | 16 | 124 | 217 | 311 | 5.00e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012342.t1 | AT5G57180 | 49.741 | 193 | 65 | 7 | 25 | 194 | 236 | 419 | 4.25e-44 | 152 |
| MS.gene012342.t1 | AT5G57180 | 49.741 | 193 | 65 | 7 | 25 | 194 | 236 | 419 | 9.00e-44 | 151 |
| MS.gene012342.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 7.67e-40 | 139 |
| MS.gene012342.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 1.37e-39 | 139 |
| MS.gene012342.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 2.26e-39 | 139 |
| MS.gene012342.t1 | AT5G14370 | 45.370 | 108 | 38 | 4 | 103 | 194 | 228 | 330 | 2.39e-18 | 81.6 |
| MS.gene012342.t1 | AT1G25440 | 36.242 | 149 | 78 | 2 | 60 | 194 | 252 | 397 | 5.95e-18 | 81.3 |
| MS.gene012342.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 103 | 194 | 103 | 187 | 2.24e-17 | 76.6 |
| MS.gene012342.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 103 | 194 | 103 | 187 | 2.71e-17 | 76.6 |
| MS.gene012342.t1 | AT1G73870 | 45.370 | 108 | 45 | 3 | 101 | 194 | 274 | 381 | 1.99e-16 | 76.6 |
| MS.gene012342.t1 | AT1G68520 | 39.474 | 114 | 47 | 2 | 99 | 194 | 284 | 393 | 2.10e-15 | 73.9 |
| MS.gene012342.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.50e-14 | 71.2 |
| MS.gene012342.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.50e-14 | 71.2 |
| MS.gene012342.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 187 | 307 | 1.65e-12 | 65.1 |
| MS.gene012342.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 194 | 314 | 1.92e-12 | 65.1 |
Find 51 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCGACACTGCATATTT+TGG | 0.094471 | 8.4:+7142653 | None:intergenic |
| ATTGATCATACCTTCATTCT+TGG | 0.253571 | 8.4:+7140670 | None:intergenic |
| TCTCATCCATGGATTGGTTT+TGG | 0.279149 | 8.4:-7142789 | MS.gene012342:CDS |
| TGTCACAAATAGATTTGTTA+TGG | 0.306145 | 8.4:-7140816 | MS.gene012342:CDS |
| ACATACATTAACATCGTTTC+CGG | 0.311561 | 8.4:+7142431 | None:intergenic |
| GCCATGTTGATGAAGGAAAT+TGG | 0.353307 | 8.4:-7142713 | MS.gene012342:CDS |
| AATTGAATTACGACGGTGTT+CGG | 0.364551 | 8.4:-7142512 | MS.gene012342:CDS |
| GGGAAATTCGACTTCCGGTT+AGG | 0.378755 | 8.4:-7142765 | MS.gene012342:CDS |
| AGGAAATTGGTGGAATTTCC+CGG | 0.382166 | 8.4:-7142700 | MS.gene012342:CDS |
| AGAAAATCAGATATCAAGTT+AGG | 0.387014 | 8.4:-7140714 | MS.gene012342:CDS |
| GTCACAAATAGATTTGTTAT+GGG | 0.395534 | 8.4:-7140815 | MS.gene012342:CDS |
| TCTTCTTCTCATCCATGGAT+TGG | 0.411520 | 8.4:-7142795 | MS.gene012342:CDS |
| GAATGCAGAATTGAAAGAAA+TGG | 0.436941 | 8.4:-7142568 | MS.gene012342:CDS |
| TTGGCGGGAAATTCGACTTC+CGG | 0.439230 | 8.4:-7142770 | MS.gene012342:CDS |
| TTTCCGGAAGCATCGGAGAC+AGG | 0.440046 | 8.4:+7142447 | None:intergenic |
| TTGTTATGGGAGAATGGAGG+AGG | 0.440896 | 8.4:-7140802 | MS.gene012342:CDS |
| CACCTCTCTGTAATCCTAAC+CGG | 0.443822 | 8.4:+7142751 | None:intergenic |
| ATAGATTTGTTATGGGAGAA+TGG | 0.448843 | 8.4:-7140808 | MS.gene012342:CDS |
| CATCGGCGAACGGCGTTCCT+CGG | 0.459344 | 8.4:+7142475 | None:intergenic |
| TGGGAGAATGGAGGAGGAAG+TGG | 0.459617 | 8.4:-7140796 | MS.gene012342:CDS |
| AGCCCTGTCTCCGATGCTTC+CGG | 0.466072 | 8.4:-7142450 | MS.gene012342:CDS |
| ACGTCTCTTCTTCTCATCCA+TGG | 0.467379 | 8.4:-7142800 | MS.gene012342:CDS |
| ACGACGGTGTTCGGAAAGCT+TGG | 0.468820 | 8.4:-7142503 | MS.gene012342:CDS |
| CGGTGGTAAGACGGCGGCGC+CGG | 0.496178 | 8.4:-7142637 | MS.gene012342:CDS |
| AACATCGTTTCCGGAAGCAT+CGG | 0.505047 | 8.4:+7142440 | None:intergenic |
| ATGCAGTGTCGGTGGTAAGA+CGG | 0.515154 | 8.4:-7142646 | MS.gene012342:CDS |
| ACCAATTTCCTTCATCAACA+TGG | 0.530695 | 8.4:+7142712 | None:intergenic |
| GAATCGCCAAAGTTGAAAAG+TGG | 0.536005 | 8.4:-7142546 | MS.gene012342:CDS |
| AAAGAAGAAGGTTGTTGCGG+TGG | 0.538258 | 8.4:-7142598 | MS.gene012342:CDS |
| GCTCTTCGCCATGTTGATGA+AGG | 0.541149 | 8.4:-7142720 | MS.gene012342:CDS |
| ATCGGAGACAGGGCTGTCAT+CGG | 0.545065 | 8.4:+7142458 | None:intergenic |
| TTCCCGCCAAAACCAATCCA+TGG | 0.558777 | 8.4:+7142783 | None:intergenic |
| CGGTTAGGATTACAGAGAGG+TGG | 0.569382 | 8.4:-7142750 | MS.gene012342:CDS |
| TTCTTTGTAACGCAGCACGC+TGG | 0.571082 | 8.4:+7140762 | None:intergenic |
| TTCCGGAAGCATCGGAGACA+GGG | 0.571094 | 8.4:+7142448 | None:intergenic |
| AGATCGACGGCCAAGAATGA+AGG | 0.572545 | 8.4:-7140680 | None:intergenic |
| AATCAGATATCAAGTTAGGA+AGG | 0.579412 | 8.4:-7140710 | MS.gene012342:CDS |
| TAAGACGGCGGCGCCGGTGA+CGG | 0.581889 | 8.4:-7142631 | MS.gene012342:CDS |
| ACAGGGCTGTCATCGGCGAA+CGG | 0.603353 | 8.4:+7142465 | None:intergenic |
| CCCAAAATATGCAGTGTCGG+TGG | 0.613838 | 8.4:-7142654 | MS.gene012342:CDS |
| CATCATGGGAGGTAGAATTG+AGG | 0.620329 | 8.4:-7142835 | None:intergenic |
| TCGCCCAAAATATGCAGTGT+CGG | 0.623873 | 8.4:-7142657 | MS.gene012342:CDS |
| GATTTGTTATGGGAGAATGG+AGG | 0.628311 | 8.4:-7140805 | MS.gene012342:CDS |
| GGAAGGTCAATGCAGATCGA+CGG | 0.632746 | 8.4:-7140693 | MS.gene012342:CDS |
| CGGAAAGCTTGGTCTGACCG+AGG | 0.657705 | 8.4:-7142492 | MS.gene012342:CDS |
| TTGTTGAAATTGAATTACGA+CGG | 0.684346 | 8.4:-7142519 | MS.gene012342:CDS |
| CAGTGTCGGTGGTAAGACGG+CGG | 0.687348 | 8.4:-7142643 | MS.gene012342:CDS |
| GGAATTGATAGCATCATGGG+AGG | 0.697923 | 8.4:-7142846 | None:intergenic |
| ATGTTGATGAAGGAAATTGG+TGG | 0.707203 | 8.4:-7142710 | MS.gene012342:CDS |
| TTCCGGTTAGGATTACAGAG+AGG | 0.750478 | 8.4:-7142753 | MS.gene012342:CDS |
| AAATTGGTGGAATTTCCCGG+CGG | 0.816024 | 8.4:-7142697 | MS.gene012342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAGAAAACAATT+GGG | + | chr8.4:7141488-7141507 | None:intergenic | 10.0% |
| !! | TAAAATAAAAGAAAGTAATT+GGG | - | chr8.4:7142031-7142050 | MS.gene012342:intron | 10.0% |
| !! | TTAAAATAAAAGAAAACAAT+TGG | + | chr8.4:7141489-7141508 | None:intergenic | 10.0% |
| !! | TTAAAATAAAAGAAAGTAAT+TGG | - | chr8.4:7142030-7142049 | MS.gene012342:intron | 10.0% |
| !! | AAAGTAAAGTAAAAAATGAA+TGG | + | chr8.4:7142212-7142231 | None:intergenic | 15.0% |
| !! | AAGTAAAGTAAAAAATGAAT+GGG | + | chr8.4:7142211-7142230 | None:intergenic | 15.0% |
| !! | ATTCTCTTACAATATTTAAA+TGG | - | chr8.4:7142274-7142293 | MS.gene012342:intron | 15.0% |
| !! | TTCTCTTACAATATTTAAAT+GGG | - | chr8.4:7142275-7142294 | MS.gene012342:intron | 15.0% |
| !!! | TTTTTTTGTGAAATAGAAAA+AGG | + | chr8.4:7142247-7142266 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGAGAGAGA+GGG | + | chr8.4:7141293-7141312 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAAAAATGAATG+GGG | + | chr8.4:7142210-7142229 | None:intergenic | 20.0% |
| !! | AGTAGCATATGTTATAATTT+AGG | - | chr8.4:7142539-7142558 | MS.gene012342:CDS | 20.0% |
| !! | ATTTAATAGATAGTGAATGA+GGG | - | chr8.4:7142618-7142637 | MS.gene012342:CDS | 20.0% |
| !! | TATTTAATAGATAGTGAATG+AGG | - | chr8.4:7142617-7142636 | MS.gene012342:CDS | 20.0% |
| !!! | AAATTGTTGATTGATATTGT+GGG | - | chr8.4:7142660-7142679 | MS.gene012342:CDS | 20.0% |
| !!! | AAGTAAAAAGATATTTGTTG+TGG | - | chr8.4:7142328-7142347 | MS.gene012342:intron | 20.0% |
| !!! | AATTAGGTAAATTTTGTCTT+GGG | - | chr8.4:7142478-7142497 | MS.gene012342:CDS | 20.0% |
| !!! | ATGACTGTTTTTTTTTTTGT+TGG | + | chr8.4:7142129-7142148 | None:intergenic | 20.0% |
| !!! | ATTTAAAATCACAGATTGAA+GGG | + | chr8.4:7141610-7141629 | None:intergenic | 20.0% |
| !!! | TATTTAAAATCACAGATTGA+AGG | + | chr8.4:7141611-7141630 | None:intergenic | 20.0% |
| !!! | TTAAGATTTTGTCTTGAATT+AGG | - | chr8.4:7142462-7142481 | MS.gene012342:CDS | 20.0% |
| !!! | TTTTGATTTTACTCCATTAA+AGG | + | chr8.4:7141584-7141603 | None:intergenic | 20.0% |
| ! | AATAACAGATACACCTTTAA+TGG | - | chr8.4:7141568-7141587 | MS.gene012342:intron | 25.0% |
| ! | AGAAAATCAGATATCAAGTT+AGG | - | chr8.4:7142798-7142817 | MS.gene012342:CDS | 25.0% |
| ! | GAAAAAAAAAAAAGAGAGAG+AGG | + | chr8.4:7141294-7141313 | None:intergenic | 25.0% |
| ! | TCAAAATAAATCTGAACCAT+TGG | - | chr8.4:7141412-7141431 | MS.gene012342:intron | 25.0% |
| ! | TTGTTGAAATTGAATTACGA+CGG | - | chr8.4:7140993-7141012 | MS.gene012342:intron | 25.0% |
| !! | ATTTTTAATCACGTGGAATA+TGG | - | chr8.4:7141344-7141363 | MS.gene012342:intron | 25.0% |
| !! | CAAATTGTTGATTGATATTG+TGG | - | chr8.4:7142659-7142678 | MS.gene012342:CDS | 25.0% |
| !! | GAATGTGTTACTCAATAAAA+AGG | - | chr8.4:7142302-7142321 | MS.gene012342:intron | 25.0% |
| !! | GAATTAGGTAAATTTTGTCT+TGG | - | chr8.4:7142477-7142496 | MS.gene012342:CDS | 25.0% |
| !! | TTTTTAATCACGTGGAATAT+GGG | - | chr8.4:7141345-7141364 | MS.gene012342:intron | 25.0% |
| !!! | CTTTAAAATCACAGATTGAA+AGG | + | chr8.4:7141635-7141654 | None:intergenic | 25.0% |
| !!! | GATTTTAAAGCAAATTTCGA+TGG | - | chr8.4:7141645-7141664 | MS.gene012342:intron | 25.0% |
| !!! | GTCACAAATAGATTTGTTAT+GGG | - | chr8.4:7142697-7142716 | MS.gene012342:CDS | 25.0% |
| !!! | GTTTGAATACTATTGATTCA+GGG | - | chr8.4:7141884-7141903 | MS.gene012342:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | - | chr8.4:7142070-7142089 | MS.gene012342:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | + | chr8.4:7142089-7142070 | None:intergenic | 25.0% |
| !!! | TGTCACAAATAGATTTGTTA+TGG | - | chr8.4:7142696-7142715 | MS.gene012342:CDS | 25.0% |
| !!! | TGTTTGAATACTATTGATTC+AGG | - | chr8.4:7141883-7141902 | MS.gene012342:intron | 25.0% |
| !!! | TTCTTTTTTAAAGATTACCC+AGG | - | chr8.4:7141317-7141336 | MS.gene012342:intron | 25.0% |
| AAATCTGAACCATTGGATAA+GGG | - | chr8.4:7141419-7141438 | MS.gene012342:intron | 30.0% | |
| AAATGTCGGAAAGGTAATTA+AGG | + | chr8.4:7141163-7141182 | None:intergenic | 30.0% | |
| AAGCAAATTTCGATGGTTAT+AGG | - | chr8.4:7141652-7141671 | MS.gene012342:intron | 30.0% | |
| AATCAGATATCAAGTTAGGA+AGG | - | chr8.4:7142802-7142821 | MS.gene012342:CDS | 30.0% | |
| AATTGACATATGAGGGATTA+AGG | + | chr8.4:7141192-7141211 | None:intergenic | 30.0% | |
| ACAAGTACGAAAACAAAAAC+AGG | + | chr8.4:7141135-7141154 | None:intergenic | 30.0% | |
| ACATACATTAACATCGTTTC+CGG | + | chr8.4:7141084-7141103 | None:intergenic | 30.0% | |
| AGCTTCTTGTTGAATTGAAA+CGG | + | chr8.4:7141777-7141796 | None:intergenic | 30.0% | |
| CTTTGTGTAGTTTCAATAAC+CGG | - | chr8.4:7142425-7142444 | MS.gene012342:intron | 30.0% | |
| GAATGCAGAATTGAAAGAAA+TGG | - | chr8.4:7140944-7140963 | MS.gene012342:intron | 30.0% | |
| GCAAAATAAATCTGAACCAT+TGG | + | chr8.4:7142107-7142126 | None:intergenic | 30.0% | |
| GTTGTTCAATTGACATATGA+GGG | + | chr8.4:7141199-7141218 | None:intergenic | 30.0% | |
| TAAATCTGAACCATTGGATA+AGG | - | chr8.4:7141418-7141437 | MS.gene012342:intron | 30.0% | |
| TATTGCAGTAAAGAAAGAGA+AGG | + | chr8.4:7141552-7141571 | None:intergenic | 30.0% | |
| TGTTGTTCAATTGACATATG+AGG | + | chr8.4:7141200-7141219 | None:intergenic | 30.0% | |
| TTGTCTTGGGTCAAAATTAT+GGG | - | chr8.4:7142491-7142510 | MS.gene012342:CDS | 30.0% | |
| TTTGTCTTGGGTCAAAATTA+TGG | - | chr8.4:7142490-7142509 | MS.gene012342:CDS | 30.0% | |
| ! | AACAGTGTTGGAAAATCAAA+GGG | - | chr8.4:7141939-7141958 | MS.gene012342:intron | 30.0% |
| ! | ATCTGATTTTCTTAGAGATG+AGG | + | chr8.4:7142790-7142809 | None:intergenic | 30.0% |
| ! | ATTTTCCAACACTGTTATGT+TGG | + | chr8.4:7141935-7141954 | None:intergenic | 30.0% |
| ! | GTTGGTTTACATTTATCCAA+TGG | - | chr8.4:7142088-7142107 | MS.gene012342:intron | 30.0% |
| ! | TAACAGTGTTGGAAAATCAA+AGG | - | chr8.4:7141938-7141957 | MS.gene012342:intron | 30.0% |
| !! | AACAATCCACTTTTCAACTT+TGG | + | chr8.4:7140975-7140994 | None:intergenic | 30.0% |
| !! | ATAGATTTGTTATGGGAGAA+TGG | - | chr8.4:7142704-7142723 | MS.gene012342:CDS | 30.0% |
| !! | GATTAAGGTACTGAAAATGT+CGG | + | chr8.4:7141177-7141196 | None:intergenic | 30.0% |
| !!! | AACAGGTGTTGAATTTTGAT+TGG | + | chr8.4:7141118-7141137 | None:intergenic | 30.0% |
| !!! | ACAGGTGTTGAATTTTGATT+GGG | + | chr8.4:7141117-7141136 | None:intergenic | 30.0% |
| AATTGAATTACGACGGTGTT+CGG | - | chr8.4:7141000-7141019 | MS.gene012342:intron | 35.0% | |
| ACCAATTTCCTTCATCAACA+TGG | + | chr8.4:7140803-7140822 | None:intergenic | 35.0% | |
| ATCAAAGGGAAAGAATGAAG+TGG | - | chr8.4:7141953-7141972 | MS.gene012342:intron | 35.0% | |
| CTTAACATGAACATACAGTC+CGG | + | chr8.4:7142447-7142466 | None:intergenic | 35.0% | |
| GAAAAAGAAGAAGGTTGTTG+CGG | - | chr8.4:7140911-7140930 | MS.gene012342:intron | 35.0% | |
| GGAGAAGAAGAAAAAGAAGA+AGG | - | chr8.4:7140902-7140921 | MS.gene012342:intron | 35.0% | |
| GTAAAGAAAGAGAAGGAAGA+TGG | + | chr8.4:7141545-7141564 | None:intergenic | 35.0% | |
| TTCTTGTTGAATTGAAACGG+TGG | + | chr8.4:7141774-7141793 | None:intergenic | 35.0% | |
| ! | ATGTTGATGAAGGAAATTGG+TGG | - | chr8.4:7140802-7140821 | MS.gene012342:CDS | 35.0% |
| ! | ATTTTAAGCATATCAACCGC+CGG | + | chr8.4:7140834-7140853 | None:intergenic | 35.0% |
| AAAATGAATGGGGCATGACA+TGG | + | chr8.4:7142200-7142219 | None:intergenic | 40.0% | |
| AAATGAATGGGGCATGACAT+GGG | + | chr8.4:7142199-7142218 | None:intergenic | 40.0% | |
| AACAAGATCAGAGGTTACTG+GGG | - | chr8.4:7141983-7142002 | MS.gene012342:intron | 40.0% | |
| AAGAGAAGGAAGATGGAAGA+AGG | + | chr8.4:7141538-7141557 | None:intergenic | 40.0% | |
| ACAACAAGATCAGAGGTTAC+TGG | - | chr8.4:7141981-7142000 | MS.gene012342:intron | 40.0% | |
| ACGTGATTAAAAATCTCGCC+TGG | + | chr8.4:7141338-7141357 | None:intergenic | 40.0% | |
| AGAGAAGGAAGATGGAAGAA+GGG | + | chr8.4:7141537-7141556 | None:intergenic | 40.0% | |
| AGGAAATTGGTGGAATTTCC+CGG | - | chr8.4:7140812-7140831 | MS.gene012342:CDS | 40.0% | |
| CAACAAGATCAGAGGTTACT+GGG | - | chr8.4:7141982-7142001 | MS.gene012342:intron | 40.0% | |
| CGTGATTAAAAATCTCGCCT+GGG | + | chr8.4:7141337-7141356 | None:intergenic | 40.0% | |
| GAATCGCCAAAGTTGAAAAG+TGG | - | chr8.4:7140966-7140985 | MS.gene012342:intron | 40.0% | |
| TCTTCTTCTCATCCATGGAT+TGG | - | chr8.4:7140717-7140736 | MS.gene012342:CDS | 40.0% | |
| TGATTGATATTGTGGGAGAC+AGG | - | chr8.4:7142667-7142686 | MS.gene012342:CDS | 40.0% | |
| TTCCAACACTGTTATGTTGG+AGG | + | chr8.4:7141932-7141951 | None:intergenic | 40.0% | |
| ! | AGGCGAGATTTTTAATCACG+TGG | - | chr8.4:7141337-7141356 | MS.gene012342:intron | 40.0% |
| ! | GCCATGTTGATGAAGGAAAT+TGG | - | chr8.4:7140799-7140818 | MS.gene012342:CDS | 40.0% |
| ! | GTTGGTTTACCCTTATCCAA+TGG | + | chr8.4:7141431-7141450 | None:intergenic | 40.0% |
| ! | TTTTAAGCATATCAACCGCC+GGG | + | chr8.4:7140833-7140852 | None:intergenic | 40.0% |
| ! | TTTTTCTTCTTCTCCGTCAC+CGG | + | chr8.4:7140897-7140916 | None:intergenic | 40.0% |
| !! | AGGTACTGAAAATGTCGGAA+AGG | + | chr8.4:7141172-7141191 | None:intergenic | 40.0% |
| !! | GATTTGTTATGGGAGAATGG+AGG | - | chr8.4:7142707-7142726 | MS.gene012342:CDS | 40.0% |
| !!! | TCTCATCCATGGATTGGTTT+TGG | - | chr8.4:7140723-7140742 | MS.gene012342:CDS | 40.0% |
| AAAGAAGAAGGTTGTTGCGG+TGG | - | chr8.4:7140914-7140933 | MS.gene012342:intron | 45.0% | |
| AAATTGGTGGAATTTCCCGG+CGG | - | chr8.4:7140815-7140834 | MS.gene012342:CDS | 45.0% | |
| ACAGTCATGTCTCCTACCAT+AGG | - | chr8.4:7142141-7142160 | MS.gene012342:intron | 45.0% | |
| ACGTCTCTTCTTCTCATCCA+TGG | - | chr8.4:7140712-7140731 | MS.gene012342:CDS | 45.0% | |
| AGACCTGAATAGGTCACCTA+TGG | + | chr8.4:7142160-7142179 | None:intergenic | 45.0% | |
| CACCTCCAACATAACAGTGT+TGG | - | chr8.4:7141927-7141946 | MS.gene012342:intron | 45.0% | |
| CACCTCTCTGTAATCCTAAC+CGG | + | chr8.4:7140764-7140783 | None:intergenic | 45.0% | |
| CTACCATAGGTGACCTATTC+AGG | - | chr8.4:7142154-7142173 | MS.gene012342:intron | 45.0% | |
| CTGAATAGGTCACCTATGGT+AGG | + | chr8.4:7142156-7142175 | None:intergenic | 45.0% | |
| GAGAAGGAAGATGGAAGAAG+GGG | + | chr8.4:7141536-7141555 | None:intergenic | 45.0% | |
| TCGCCCAAAATATGCAGTGT+CGG | - | chr8.4:7140855-7140874 | MS.gene012342:intron | 45.0% | |
| TTCCGGTTAGGATTACAGAG+AGG | - | chr8.4:7140759-7140778 | MS.gene012342:CDS | 45.0% | |
| TTGTTATGGGAGAATGGAGG+AGG | - | chr8.4:7142710-7142729 | MS.gene012342:CDS | 45.0% | |
| ! | AACATCGTTTCCGGAAGCAT+CGG | + | chr8.4:7141075-7141094 | None:intergenic | 45.0% |
| ! | ACCACCGACACTGCATATTT+TGG | + | chr8.4:7140862-7140881 | None:intergenic | 45.0% |
| ! | CCACCGACACTGCATATTTT+GGG | + | chr8.4:7140861-7140880 | None:intergenic | 45.0% |
| !!! | ATCCATGGATTGGTTTTGGC+GGG | - | chr8.4:7140727-7140746 | MS.gene012342:CDS | 45.0% |
| !!! | CATCCATGGATTGGTTTTGG+CGG | - | chr8.4:7140726-7140745 | MS.gene012342:CDS | 45.0% |
| !! | AAAAAAAAAAGAAAAATTAA+TGG | - | chr8.4:7141722-7141741 | MS.gene012342:intron | 5.0% |
| !! | ATTATTATTTAAGTATAAAA+AGG | - | chr8.4:7141840-7141859 | MS.gene012342:intron | 5.0% |
| CGGTTAGGATTACAGAGAGG+TGG | - | chr8.4:7140762-7140781 | MS.gene012342:CDS | 50.0% | |
| GATATTGTGGGAGACAGGCA+CGG | - | chr8.4:7142672-7142691 | MS.gene012342:CDS | 50.0% | |
| GGAAGGTCAATGCAGATCGA+CGG | - | chr8.4:7142819-7142838 | MS.gene012342:CDS | 50.0% | |
| GGCAGCAACAACAAGATCAG+AGG | - | chr8.4:7141974-7141993 | MS.gene012342:intron | 50.0% | |
| GGGAAATTCGACTTCCGGTT+AGG | - | chr8.4:7140747-7140766 | MS.gene012342:CDS | 50.0% | |
| TTCCCGCCAAAACCAATCCA+TGG | + | chr8.4:7140732-7140751 | None:intergenic | 50.0% | |
| TTCTTTGTAACGCAGCACGC+TGG | + | chr8.4:7142753-7142772 | None:intergenic | 50.0% | |
| TTGGCGGGAAATTCGACTTC+CGG | - | chr8.4:7140742-7140761 | MS.gene012342:CDS | 50.0% | |
| ! | CCCAAAATATGCAGTGTCGG+TGG | - | chr8.4:7140858-7140877 | MS.gene012342:intron | 50.0% |
| ! | GCTCTTCGCCATGTTGATGA+AGG | - | chr8.4:7140792-7140811 | MS.gene012342:CDS | 50.0% |
| !! | ATGCAGTGTCGGTGGTAAGA+CGG | - | chr8.4:7140866-7140885 | MS.gene012342:intron | 50.0% |
| ACGACGGTGTTCGGAAAGCT+TGG | - | chr8.4:7141009-7141028 | MS.gene012342:intron | 55.0% | |
| AGAGGTTACTGGGGTGAGAG+AGG | - | chr8.4:7141992-7142011 | MS.gene012342:intron | 55.0% | |
| ATCGGAGACAGGGCTGTCAT+CGG | + | chr8.4:7141057-7141076 | None:intergenic | 55.0% | |
| CATGACATGGGCTCTGTCTC+CGG | + | chr8.4:7142187-7142206 | None:intergenic | 55.0% | |
| GACCTATTCAGGTCTCCCAC+CGG | - | chr8.4:7142165-7142184 | MS.gene012342:intron | 55.0% | |
| TGGGAGAATGGAGGAGGAAG+TGG | - | chr8.4:7142716-7142735 | MS.gene012342:CDS | 55.0% | |
| !! | TTCCGGAAGCATCGGAGACA+GGG | + | chr8.4:7141067-7141086 | None:intergenic | 55.0% |
| !! | TTTCCGGAAGCATCGGAGAC+AGG | + | chr8.4:7141068-7141087 | None:intergenic | 55.0% |
| ACAGGGCTGTCATCGGCGAA+CGG | + | chr8.4:7141050-7141069 | None:intergenic | 60.0% | |
| ACATGGGCTCTGTCTCCGGT+GGG | + | chr8.4:7142183-7142202 | None:intergenic | 60.0% | |
| AGCCCTGTCTCCGATGCTTC+CGG | - | chr8.4:7141062-7141081 | MS.gene012342:intron | 60.0% | |
| AGGGGCGAGAGAGGAAAGAG+AGG | + | chr8.4:7141518-7141537 | None:intergenic | 60.0% | |
| CGGAAAGCTTGGTCTGACCG+AGG | - | chr8.4:7141020-7141039 | MS.gene012342:intron | 60.0% | |
| CTCCGGTGGGAGACCTGAAT+AGG | + | chr8.4:7142170-7142189 | None:intergenic | 60.0% | |
| GATGGAAGAAGGGGCGAGAG+AGG | + | chr8.4:7141527-7141546 | None:intergenic | 60.0% | |
| !! | CAGTGTCGGTGGTAAGACGG+CGG | - | chr8.4:7140869-7140888 | MS.gene012342:intron | 60.0% |
| CATCGGCGAACGGCGTTCCT+CGG | + | chr8.4:7141040-7141059 | None:intergenic | 65.0% | |
| GACATGGGCTCTGTCTCCGG+TGG | + | chr8.4:7142184-7142203 | None:intergenic | 65.0% | |
| !! | TAAGACGGCGGCGCCGGTGA+CGG | - | chr8.4:7140881-7140900 | MS.gene012342:intron | 70.0% |
| CGGTGGTAAGACGGCGGCGC+CGG | - | chr8.4:7140875-7140894 | MS.gene012342:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7140681 | 7142853 | 7140681 | ID=MS.gene012342 |
| chr8.4 | mRNA | 7140681 | 7142853 | 7140681 | ID=MS.gene012342.t1;Parent=MS.gene012342 |
| chr8.4 | exon | 7142437 | 7142853 | 7142437 | ID=MS.gene012342.t1.exon1;Parent=MS.gene012342.t1 |
| chr8.4 | CDS | 7142437 | 7142853 | 7142437 | ID=cds.MS.gene012342.t1;Parent=MS.gene012342.t1 |
| chr8.4 | exon | 7140681 | 7140845 | 7140681 | ID=MS.gene012342.t1.exon2;Parent=MS.gene012342.t1 |
| chr8.4 | CDS | 7140681 | 7140845 | 7140681 | ID=cds.MS.gene012342.t1;Parent=MS.gene012342.t1 |
| Gene Sequence |
| Protein sequence |
