Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012343.t1 | RHN64690.1 | 93.8 | 195 | 11 | 1 | 1 | 194 | 184 | 378 | 3.50E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012343.t1 | Q9LU68 | 46.8 | 220 | 81 | 7 | 2 | 194 | 209 | 419 | 6.7e-30 | 132.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012343.t1 | G7JUA6 | 93.8 | 195 | 11 | 1 | 1 | 194 | 184 | 378 | 2.6e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012343.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012343.t1 | MTR_4g127420 | 98.462 | 195 | 2 | 1 | 1 | 194 | 184 | 378 | 1.52e-137 | 389 |
| MS.gene012343.t1 | MTR_5g072780 | 47.009 | 117 | 57 | 3 | 78 | 194 | 99 | 210 | 1.51e-22 | 90.9 |
| MS.gene012343.t1 | MTR_7g032240 | 34.783 | 161 | 67 | 5 | 69 | 194 | 188 | 345 | 2.06e-18 | 82.0 |
| MS.gene012343.t1 | MTR_1g110870 | 44.444 | 108 | 48 | 4 | 99 | 194 | 311 | 418 | 3.79e-17 | 79.0 |
| MS.gene012343.t1 | MTR_8g104190 | 42.727 | 110 | 35 | 3 | 105 | 194 | 293 | 394 | 9.98e-16 | 74.7 |
| MS.gene012343.t1 | MTR_2g038010 | 40.541 | 111 | 48 | 4 | 16 | 124 | 217 | 311 | 5.00e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012343.t1 | AT5G57180 | 49.741 | 193 | 65 | 7 | 25 | 194 | 236 | 419 | 4.25e-44 | 152 |
| MS.gene012343.t1 | AT5G57180 | 49.741 | 193 | 65 | 7 | 25 | 194 | 236 | 419 | 9.00e-44 | 151 |
| MS.gene012343.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 7.67e-40 | 139 |
| MS.gene012343.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 1.37e-39 | 139 |
| MS.gene012343.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 2.26e-39 | 139 |
| MS.gene012343.t1 | AT5G14370 | 45.370 | 108 | 38 | 4 | 103 | 194 | 228 | 330 | 2.39e-18 | 81.6 |
| MS.gene012343.t1 | AT1G25440 | 36.242 | 149 | 78 | 2 | 60 | 194 | 252 | 397 | 5.95e-18 | 81.3 |
| MS.gene012343.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 103 | 194 | 103 | 187 | 2.24e-17 | 76.6 |
| MS.gene012343.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 103 | 194 | 103 | 187 | 2.71e-17 | 76.6 |
| MS.gene012343.t1 | AT1G73870 | 45.370 | 108 | 45 | 3 | 101 | 194 | 274 | 381 | 1.99e-16 | 76.6 |
| MS.gene012343.t1 | AT1G68520 | 39.474 | 114 | 47 | 2 | 99 | 194 | 284 | 393 | 2.10e-15 | 73.9 |
| MS.gene012343.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.50e-14 | 71.2 |
| MS.gene012343.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.50e-14 | 71.2 |
| MS.gene012343.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 187 | 307 | 1.65e-12 | 65.1 |
| MS.gene012343.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 194 | 314 | 1.92e-12 | 65.1 |
Find 51 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCGACACTGCATATTT+TGG | 0.094471 | 8.1:-5420015 | None:intergenic |
| ATTGATCATACCTTCATTCT+TGG | 0.253571 | 8.1:-5421998 | None:intergenic |
| TCTCATCCATGGATTGGTTT+TGG | 0.279149 | 8.1:+5419879 | MS.gene012343:CDS |
| TGTCACAAATAGATTTGTTA+TGG | 0.306145 | 8.1:+5421852 | MS.gene012343:CDS |
| ACATACATTAACATCGTTTC+CGG | 0.311561 | 8.1:-5420237 | None:intergenic |
| GCCATGTTGATGAAGGAAAT+TGG | 0.353307 | 8.1:+5419955 | MS.gene012343:CDS |
| AATTGAATTACGACGGTGTT+CGG | 0.364551 | 8.1:+5420156 | MS.gene012343:CDS |
| GGGAAATTCGACTTCCGGTT+AGG | 0.378755 | 8.1:+5419903 | MS.gene012343:CDS |
| AGGAAATTGGTGGAATTTCC+CGG | 0.382166 | 8.1:+5419968 | MS.gene012343:CDS |
| AGAAAATCAGATATCAAGTT+AGG | 0.387014 | 8.1:+5421954 | MS.gene012343:CDS |
| GTCACAAATAGATTTGTTAT+GGG | 0.395534 | 8.1:+5421853 | MS.gene012343:CDS |
| TCTTCTTCTCATCCATGGAT+TGG | 0.411520 | 8.1:+5419873 | MS.gene012343:CDS |
| GAATGCAGAATTGAAAGAAA+TGG | 0.436941 | 8.1:+5420100 | MS.gene012343:CDS |
| TTGGCGGGAAATTCGACTTC+CGG | 0.439230 | 8.1:+5419898 | MS.gene012343:CDS |
| TTTCCGGAAGCATCGGAGAC+AGG | 0.440046 | 8.1:-5420221 | None:intergenic |
| TTGTTATGGGAGAATGGAGG+AGG | 0.440896 | 8.1:+5421866 | MS.gene012343:CDS |
| CACCTCTCTGTAATCCTAAC+CGG | 0.443822 | 8.1:-5419917 | None:intergenic |
| ATAGATTTGTTATGGGAGAA+TGG | 0.448843 | 8.1:+5421860 | MS.gene012343:CDS |
| CATCGGCGAACGGCGTTCCT+CGG | 0.459344 | 8.1:-5420193 | None:intergenic |
| TGGGAGAATGGAGGAGGAAG+TGG | 0.459617 | 8.1:+5421872 | MS.gene012343:CDS |
| AGCCCTGTCTCCGATGCTTC+CGG | 0.466072 | 8.1:+5420218 | MS.gene012343:CDS |
| ACGTCTCTTCTTCTCATCCA+TGG | 0.467379 | 8.1:+5419868 | MS.gene012343:CDS |
| ACGACGGTGTTCGGAAAGCT+TGG | 0.468820 | 8.1:+5420165 | MS.gene012343:CDS |
| CGGTGGTAAGACGGCGGCGC+CGG | 0.496178 | 8.1:+5420031 | MS.gene012343:CDS |
| AACATCGTTTCCGGAAGCAT+CGG | 0.505047 | 8.1:-5420228 | None:intergenic |
| ATGCAGTGTCGGTGGTAAGA+CGG | 0.515154 | 8.1:+5420022 | MS.gene012343:CDS |
| ACCAATTTCCTTCATCAACA+TGG | 0.530695 | 8.1:-5419956 | None:intergenic |
| GAATCGCCAAAGTTGAAAAG+TGG | 0.536005 | 8.1:+5420122 | MS.gene012343:CDS |
| AAAGAAGAAGGTTGTTGCGG+TGG | 0.538258 | 8.1:+5420070 | MS.gene012343:CDS |
| GCTCTTCGCCATGTTGATGA+AGG | 0.541149 | 8.1:+5419948 | MS.gene012343:CDS |
| ATCGGAGACAGGGCTGTCAT+CGG | 0.545065 | 8.1:-5420210 | None:intergenic |
| TTCCCGCCAAAACCAATCCA+TGG | 0.558777 | 8.1:-5419885 | None:intergenic |
| CGGTTAGGATTACAGAGAGG+TGG | 0.569382 | 8.1:+5419918 | MS.gene012343:CDS |
| TTCTTTGTAACGCAGCACGC+TGG | 0.571082 | 8.1:-5421906 | None:intergenic |
| TTCCGGAAGCATCGGAGACA+GGG | 0.571094 | 8.1:-5420220 | None:intergenic |
| AGATCGACGGCCAAGAATGA+AGG | 0.572545 | 8.1:+5421988 | MS.gene012343:CDS |
| AATCAGATATCAAGTTAGGA+AGG | 0.579412 | 8.1:+5421958 | MS.gene012343:CDS |
| TAAGACGGCGGCGCCGGTGA+CGG | 0.581889 | 8.1:+5420037 | MS.gene012343:CDS |
| ACAGGGCTGTCATCGGCGAA+CGG | 0.603353 | 8.1:-5420203 | None:intergenic |
| CCCAAAATATGCAGTGTCGG+TGG | 0.613838 | 8.1:+5420014 | MS.gene012343:CDS |
| CATCATGGGAGGTAGAATTG+AGG | 0.620329 | 8.1:+5419833 | None:intergenic |
| TCGCCCAAAATATGCAGTGT+CGG | 0.623873 | 8.1:+5420011 | MS.gene012343:CDS |
| GATTTGTTATGGGAGAATGG+AGG | 0.628311 | 8.1:+5421863 | MS.gene012343:CDS |
| GGAAGGTCAATGCAGATCGA+CGG | 0.632746 | 8.1:+5421975 | MS.gene012343:CDS |
| CGGAAAGCTTGGTCTGACCG+AGG | 0.657705 | 8.1:+5420176 | MS.gene012343:CDS |
| TTGTTGAAATTGAATTACGA+CGG | 0.684346 | 8.1:+5420149 | MS.gene012343:CDS |
| CAGTGTCGGTGGTAAGACGG+CGG | 0.687348 | 8.1:+5420025 | MS.gene012343:CDS |
| GGAATTGATAGCATCATGGG+AGG | 0.697923 | 8.1:+5419822 | None:intergenic |
| ATGTTGATGAAGGAAATTGG+TGG | 0.707203 | 8.1:+5419958 | MS.gene012343:CDS |
| TTCCGGTTAGGATTACAGAG+AGG | 0.750478 | 8.1:+5419915 | MS.gene012343:CDS |
| AAATTGGTGGAATTTCCCGG+CGG | 0.816024 | 8.1:+5419971 | MS.gene012343:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAGAAAACAATT+GGG | - | chr8.1:5420644-5420663 | None:intergenic | 10.0% |
| !! | TAAAATAAAAGAAAGTAATT+GGG | + | chr8.1:5421187-5421206 | MS.gene012343:intron | 10.0% |
| !! | TTAAAATAAAAGAAAACAAT+TGG | - | chr8.1:5420645-5420664 | None:intergenic | 10.0% |
| !! | TTAAAATAAAAGAAAGTAAT+TGG | + | chr8.1:5421186-5421205 | MS.gene012343:intron | 10.0% |
| !! | AAAGTAAAGTAAAAAATGAA+TGG | - | chr8.1:5421368-5421387 | None:intergenic | 15.0% |
| !! | AAGTAAAGTAAAAAATGAAT+GGG | - | chr8.1:5421367-5421386 | None:intergenic | 15.0% |
| !! | ATTCTCTTACAATATTTAAA+TGG | + | chr8.1:5421430-5421449 | MS.gene012343:intron | 15.0% |
| !! | TTCTCTTACAATATTTAAAT+GGG | + | chr8.1:5421431-5421450 | MS.gene012343:intron | 15.0% |
| !!! | TTTTTTTGTGAAATAGAAAA+AGG | - | chr8.1:5421403-5421422 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGAGAGAGA+GGG | - | chr8.1:5420449-5420468 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAAAAATGAATG+GGG | - | chr8.1:5421366-5421385 | None:intergenic | 20.0% |
| !! | AGTAGCATATGTTATAATTT+AGG | + | chr8.1:5421695-5421714 | MS.gene012343:intron | 20.0% |
| !! | ATTTAATAGATAGTGAATGA+GGG | + | chr8.1:5421774-5421793 | MS.gene012343:intron | 20.0% |
| !! | TATTTAATAGATAGTGAATG+AGG | + | chr8.1:5421773-5421792 | MS.gene012343:intron | 20.0% |
| !!! | AAATTGTTGATTGATATTGT+GGG | + | chr8.1:5421816-5421835 | MS.gene012343:intron | 20.0% |
| !!! | AAGTAAAAAGATATTTGTTG+TGG | + | chr8.1:5421484-5421503 | MS.gene012343:intron | 20.0% |
| !!! | AATTAGGTAAATTTTGTCTT+GGG | + | chr8.1:5421634-5421653 | MS.gene012343:intron | 20.0% |
| !!! | ATGACTGTTTTTTTTTTTGT+TGG | - | chr8.1:5421285-5421304 | None:intergenic | 20.0% |
| !!! | ATTTAAAATCACAGATTGAA+GGG | - | chr8.1:5420766-5420785 | None:intergenic | 20.0% |
| !!! | TATTTAAAATCACAGATTGA+AGG | - | chr8.1:5420767-5420786 | None:intergenic | 20.0% |
| !!! | TTAAGATTTTGTCTTGAATT+AGG | + | chr8.1:5421618-5421637 | MS.gene012343:intron | 20.0% |
| !!! | TTTTGATTTTACTCCATTAA+AGG | - | chr8.1:5420740-5420759 | None:intergenic | 20.0% |
| ! | AATAACAGATACACCTTTAA+TGG | + | chr8.1:5420724-5420743 | MS.gene012343:intron | 25.0% |
| ! | AGAAAATCAGATATCAAGTT+AGG | + | chr8.1:5421954-5421973 | MS.gene012343:CDS | 25.0% |
| ! | GAAAAAAAAAAAAGAGAGAG+AGG | - | chr8.1:5420450-5420469 | None:intergenic | 25.0% |
| ! | TCAAAATAAATCTGAACCAT+TGG | + | chr8.1:5420568-5420587 | MS.gene012343:intron | 25.0% |
| ! | TTGTTGAAATTGAATTACGA+CGG | + | chr8.1:5420149-5420168 | MS.gene012343:CDS | 25.0% |
| !! | ATTTTTAATCACGTGGAATA+TGG | + | chr8.1:5420500-5420519 | MS.gene012343:intron | 25.0% |
| !! | CAAATTGTTGATTGATATTG+TGG | + | chr8.1:5421815-5421834 | MS.gene012343:intron | 25.0% |
| !! | GAATGTGTTACTCAATAAAA+AGG | + | chr8.1:5421458-5421477 | MS.gene012343:intron | 25.0% |
| !! | GAATTAGGTAAATTTTGTCT+TGG | + | chr8.1:5421633-5421652 | MS.gene012343:intron | 25.0% |
| !! | TTTTTAATCACGTGGAATAT+GGG | + | chr8.1:5420501-5420520 | MS.gene012343:intron | 25.0% |
| !!! | CTTTAAAATCACAGATTGAA+AGG | - | chr8.1:5420791-5420810 | None:intergenic | 25.0% |
| !!! | GATTTTAAAGCAAATTTCGA+TGG | + | chr8.1:5420801-5420820 | MS.gene012343:intron | 25.0% |
| !!! | GTCACAAATAGATTTGTTAT+GGG | + | chr8.1:5421853-5421872 | MS.gene012343:CDS | 25.0% |
| !!! | GTTTGAATACTATTGATTCA+GGG | + | chr8.1:5421040-5421059 | MS.gene012343:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | + | chr8.1:5421226-5421245 | MS.gene012343:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | - | chr8.1:5421245-5421226 | None:intergenic | 25.0% |
| !!! | TGTCACAAATAGATTTGTTA+TGG | + | chr8.1:5421852-5421871 | MS.gene012343:CDS | 25.0% |
| !!! | TGTTTGAATACTATTGATTC+AGG | + | chr8.1:5421039-5421058 | MS.gene012343:intron | 25.0% |
| !!! | TTCTTTTTTAAAGATTACCC+AGG | + | chr8.1:5420473-5420492 | MS.gene012343:intron | 25.0% |
| AAATCTGAACCATTGGATAA+GGG | + | chr8.1:5420575-5420594 | MS.gene012343:intron | 30.0% | |
| AAATGTCGGAAAGGTAATTA+AGG | - | chr8.1:5420319-5420338 | None:intergenic | 30.0% | |
| AAGCAAATTTCGATGGTTAT+AGG | + | chr8.1:5420808-5420827 | MS.gene012343:intron | 30.0% | |
| AATCAGATATCAAGTTAGGA+AGG | + | chr8.1:5421958-5421977 | MS.gene012343:CDS | 30.0% | |
| AATTGACATATGAGGGATTA+AGG | - | chr8.1:5420348-5420367 | None:intergenic | 30.0% | |
| ACAAGTACGAAAACAAAAAC+AGG | - | chr8.1:5420291-5420310 | None:intergenic | 30.0% | |
| ACATACATTAACATCGTTTC+CGG | - | chr8.1:5420240-5420259 | None:intergenic | 30.0% | |
| AGCTTCTTGTTGAATTGAAA+CGG | - | chr8.1:5420933-5420952 | None:intergenic | 30.0% | |
| CTTTGTGTAGTTTCAATAAC+CGG | + | chr8.1:5421581-5421600 | MS.gene012343:intron | 30.0% | |
| GAATGCAGAATTGAAAGAAA+TGG | + | chr8.1:5420100-5420119 | MS.gene012343:CDS | 30.0% | |
| GCAAAATAAATCTGAACCAT+TGG | - | chr8.1:5421263-5421282 | None:intergenic | 30.0% | |
| GTTGTTCAATTGACATATGA+GGG | - | chr8.1:5420355-5420374 | None:intergenic | 30.0% | |
| TAAATCTGAACCATTGGATA+AGG | + | chr8.1:5420574-5420593 | MS.gene012343:intron | 30.0% | |
| TATTGCAGTAAAGAAAGAGA+AGG | - | chr8.1:5420708-5420727 | None:intergenic | 30.0% | |
| TGTTGTTCAATTGACATATG+AGG | - | chr8.1:5420356-5420375 | None:intergenic | 30.0% | |
| TTGTCTTGGGTCAAAATTAT+GGG | + | chr8.1:5421647-5421666 | MS.gene012343:intron | 30.0% | |
| TTTGTCTTGGGTCAAAATTA+TGG | + | chr8.1:5421646-5421665 | MS.gene012343:intron | 30.0% | |
| ! | AACAGTGTTGGAAAATCAAA+GGG | + | chr8.1:5421095-5421114 | MS.gene012343:intron | 30.0% |
| ! | ATCTGATTTTCTTAGAGATG+AGG | - | chr8.1:5421946-5421965 | None:intergenic | 30.0% |
| ! | ATTTTCCAACACTGTTATGT+TGG | - | chr8.1:5421091-5421110 | None:intergenic | 30.0% |
| ! | GTTGGTTTACATTTATCCAA+TGG | + | chr8.1:5421244-5421263 | MS.gene012343:intron | 30.0% |
| ! | TAACAGTGTTGGAAAATCAA+AGG | + | chr8.1:5421094-5421113 | MS.gene012343:intron | 30.0% |
| !! | AACAATCCACTTTTCAACTT+TGG | - | chr8.1:5420131-5420150 | None:intergenic | 30.0% |
| !! | ATAGATTTGTTATGGGAGAA+TGG | + | chr8.1:5421860-5421879 | MS.gene012343:CDS | 30.0% |
| !! | GATTAAGGTACTGAAAATGT+CGG | - | chr8.1:5420333-5420352 | None:intergenic | 30.0% |
| !!! | AACAGGTGTTGAATTTTGAT+TGG | - | chr8.1:5420274-5420293 | None:intergenic | 30.0% |
| !!! | ACAGGTGTTGAATTTTGATT+GGG | - | chr8.1:5420273-5420292 | None:intergenic | 30.0% |
| AATTGAATTACGACGGTGTT+CGG | + | chr8.1:5420156-5420175 | MS.gene012343:CDS | 35.0% | |
| ACCAATTTCCTTCATCAACA+TGG | - | chr8.1:5419959-5419978 | None:intergenic | 35.0% | |
| ATCAAAGGGAAAGAATGAAG+TGG | + | chr8.1:5421109-5421128 | MS.gene012343:intron | 35.0% | |
| CTTAACATGAACATACAGTC+CGG | - | chr8.1:5421603-5421622 | None:intergenic | 35.0% | |
| GAAAAAGAAGAAGGTTGTTG+CGG | + | chr8.1:5420067-5420086 | MS.gene012343:CDS | 35.0% | |
| GGAGAAGAAGAAAAAGAAGA+AGG | + | chr8.1:5420058-5420077 | MS.gene012343:CDS | 35.0% | |
| GTAAAGAAAGAGAAGGAAGA+TGG | - | chr8.1:5420701-5420720 | None:intergenic | 35.0% | |
| TTCTTGTTGAATTGAAACGG+TGG | - | chr8.1:5420930-5420949 | None:intergenic | 35.0% | |
| ! | ATGTTGATGAAGGAAATTGG+TGG | + | chr8.1:5419958-5419977 | MS.gene012343:CDS | 35.0% |
| ! | ATTTTAAGCATATCAACCGC+CGG | - | chr8.1:5419990-5420009 | None:intergenic | 35.0% |
| AAAATGAATGGGGCATGACA+TGG | - | chr8.1:5421356-5421375 | None:intergenic | 40.0% | |
| AAATGAATGGGGCATGACAT+GGG | - | chr8.1:5421355-5421374 | None:intergenic | 40.0% | |
| AACAAGATCAGAGGTTACTG+GGG | + | chr8.1:5421139-5421158 | MS.gene012343:intron | 40.0% | |
| AAGAGAAGGAAGATGGAAGA+AGG | - | chr8.1:5420694-5420713 | None:intergenic | 40.0% | |
| ACAACAAGATCAGAGGTTAC+TGG | + | chr8.1:5421137-5421156 | MS.gene012343:intron | 40.0% | |
| ACGTGATTAAAAATCTCGCC+TGG | - | chr8.1:5420494-5420513 | None:intergenic | 40.0% | |
| AGAGAAGGAAGATGGAAGAA+GGG | - | chr8.1:5420693-5420712 | None:intergenic | 40.0% | |
| AGGAAATTGGTGGAATTTCC+CGG | + | chr8.1:5419968-5419987 | MS.gene012343:CDS | 40.0% | |
| CAACAAGATCAGAGGTTACT+GGG | + | chr8.1:5421138-5421157 | MS.gene012343:intron | 40.0% | |
| CGTGATTAAAAATCTCGCCT+GGG | - | chr8.1:5420493-5420512 | None:intergenic | 40.0% | |
| GAATCGCCAAAGTTGAAAAG+TGG | + | chr8.1:5420122-5420141 | MS.gene012343:CDS | 40.0% | |
| TCTTCTTCTCATCCATGGAT+TGG | + | chr8.1:5419873-5419892 | MS.gene012343:CDS | 40.0% | |
| TGATTGATATTGTGGGAGAC+AGG | + | chr8.1:5421823-5421842 | MS.gene012343:intron | 40.0% | |
| TTCCAACACTGTTATGTTGG+AGG | - | chr8.1:5421088-5421107 | None:intergenic | 40.0% | |
| ! | AGGCGAGATTTTTAATCACG+TGG | + | chr8.1:5420493-5420512 | MS.gene012343:intron | 40.0% |
| ! | GCCATGTTGATGAAGGAAAT+TGG | + | chr8.1:5419955-5419974 | MS.gene012343:CDS | 40.0% |
| ! | GTTGGTTTACCCTTATCCAA+TGG | - | chr8.1:5420587-5420606 | None:intergenic | 40.0% |
| ! | TTTTAAGCATATCAACCGCC+GGG | - | chr8.1:5419989-5420008 | None:intergenic | 40.0% |
| ! | TTTTTCTTCTTCTCCGTCAC+CGG | - | chr8.1:5420053-5420072 | None:intergenic | 40.0% |
| !! | AGGTACTGAAAATGTCGGAA+AGG | - | chr8.1:5420328-5420347 | None:intergenic | 40.0% |
| !! | GATTTGTTATGGGAGAATGG+AGG | + | chr8.1:5421863-5421882 | MS.gene012343:CDS | 40.0% |
| !!! | TCTCATCCATGGATTGGTTT+TGG | + | chr8.1:5419879-5419898 | MS.gene012343:CDS | 40.0% |
| AAAGAAGAAGGTTGTTGCGG+TGG | + | chr8.1:5420070-5420089 | MS.gene012343:CDS | 45.0% | |
| AAATTGGTGGAATTTCCCGG+CGG | + | chr8.1:5419971-5419990 | MS.gene012343:CDS | 45.0% | |
| ACAGTCATGTCTCCTACCAT+AGG | + | chr8.1:5421297-5421316 | MS.gene012343:intron | 45.0% | |
| ACGTCTCTTCTTCTCATCCA+TGG | + | chr8.1:5419868-5419887 | MS.gene012343:CDS | 45.0% | |
| AGACCTGAATAGGTCACCTA+TGG | - | chr8.1:5421316-5421335 | None:intergenic | 45.0% | |
| CACCTCCAACATAACAGTGT+TGG | + | chr8.1:5421083-5421102 | MS.gene012343:intron | 45.0% | |
| CACCTCTCTGTAATCCTAAC+CGG | - | chr8.1:5419920-5419939 | None:intergenic | 45.0% | |
| CTACCATAGGTGACCTATTC+AGG | + | chr8.1:5421310-5421329 | MS.gene012343:intron | 45.0% | |
| CTGAATAGGTCACCTATGGT+AGG | - | chr8.1:5421312-5421331 | None:intergenic | 45.0% | |
| GAGAAGGAAGATGGAAGAAG+GGG | - | chr8.1:5420692-5420711 | None:intergenic | 45.0% | |
| TCGCCCAAAATATGCAGTGT+CGG | + | chr8.1:5420011-5420030 | MS.gene012343:CDS | 45.0% | |
| TTCCGGTTAGGATTACAGAG+AGG | + | chr8.1:5419915-5419934 | MS.gene012343:CDS | 45.0% | |
| TTGTTATGGGAGAATGGAGG+AGG | + | chr8.1:5421866-5421885 | MS.gene012343:CDS | 45.0% | |
| ! | AACATCGTTTCCGGAAGCAT+CGG | - | chr8.1:5420231-5420250 | None:intergenic | 45.0% |
| ! | ACCACCGACACTGCATATTT+TGG | - | chr8.1:5420018-5420037 | None:intergenic | 45.0% |
| ! | CCACCGACACTGCATATTTT+GGG | - | chr8.1:5420017-5420036 | None:intergenic | 45.0% |
| !!! | ATCCATGGATTGGTTTTGGC+GGG | + | chr8.1:5419883-5419902 | MS.gene012343:CDS | 45.0% |
| !!! | CATCCATGGATTGGTTTTGG+CGG | + | chr8.1:5419882-5419901 | MS.gene012343:CDS | 45.0% |
| !! | AAAAAAAAAAGAAAAATTAA+TGG | + | chr8.1:5420878-5420897 | MS.gene012343:intron | 5.0% |
| !! | ATTATTATTTAAGTATAAAA+AGG | + | chr8.1:5420996-5421015 | MS.gene012343:intron | 5.0% |
| CGGTTAGGATTACAGAGAGG+TGG | + | chr8.1:5419918-5419937 | MS.gene012343:CDS | 50.0% | |
| GATATTGTGGGAGACAGGCA+CGG | + | chr8.1:5421828-5421847 | MS.gene012343:intron | 50.0% | |
| GGAAGGTCAATGCAGATCGA+CGG | + | chr8.1:5421975-5421994 | MS.gene012343:CDS | 50.0% | |
| GGCAGCAACAACAAGATCAG+AGG | + | chr8.1:5421130-5421149 | MS.gene012343:intron | 50.0% | |
| GGGAAATTCGACTTCCGGTT+AGG | + | chr8.1:5419903-5419922 | MS.gene012343:CDS | 50.0% | |
| TTCCCGCCAAAACCAATCCA+TGG | - | chr8.1:5419888-5419907 | None:intergenic | 50.0% | |
| TTCTTTGTAACGCAGCACGC+TGG | - | chr8.1:5421909-5421928 | None:intergenic | 50.0% | |
| TTGGCGGGAAATTCGACTTC+CGG | + | chr8.1:5419898-5419917 | MS.gene012343:CDS | 50.0% | |
| ! | CCCAAAATATGCAGTGTCGG+TGG | + | chr8.1:5420014-5420033 | MS.gene012343:CDS | 50.0% |
| ! | GCTCTTCGCCATGTTGATGA+AGG | + | chr8.1:5419948-5419967 | MS.gene012343:CDS | 50.0% |
| !! | ATGCAGTGTCGGTGGTAAGA+CGG | + | chr8.1:5420022-5420041 | MS.gene012343:CDS | 50.0% |
| ACGACGGTGTTCGGAAAGCT+TGG | + | chr8.1:5420165-5420184 | MS.gene012343:CDS | 55.0% | |
| AGAGGTTACTGGGGTGAGAG+AGG | + | chr8.1:5421148-5421167 | MS.gene012343:intron | 55.0% | |
| ATCGGAGACAGGGCTGTCAT+CGG | - | chr8.1:5420213-5420232 | None:intergenic | 55.0% | |
| CATGACATGGGCTCTGTCTC+CGG | - | chr8.1:5421343-5421362 | None:intergenic | 55.0% | |
| GACCTATTCAGGTCTCCCAC+CGG | + | chr8.1:5421321-5421340 | MS.gene012343:intron | 55.0% | |
| TGGGAGAATGGAGGAGGAAG+TGG | + | chr8.1:5421872-5421891 | MS.gene012343:CDS | 55.0% | |
| !! | TTCCGGAAGCATCGGAGACA+GGG | - | chr8.1:5420223-5420242 | None:intergenic | 55.0% |
| !! | TTTCCGGAAGCATCGGAGAC+AGG | - | chr8.1:5420224-5420243 | None:intergenic | 55.0% |
| ACAGGGCTGTCATCGGCGAA+CGG | - | chr8.1:5420206-5420225 | None:intergenic | 60.0% | |
| ACATGGGCTCTGTCTCCGGT+GGG | - | chr8.1:5421339-5421358 | None:intergenic | 60.0% | |
| AGCCCTGTCTCCGATGCTTC+CGG | + | chr8.1:5420218-5420237 | MS.gene012343:CDS | 60.0% | |
| AGGGGCGAGAGAGGAAAGAG+AGG | - | chr8.1:5420674-5420693 | None:intergenic | 60.0% | |
| CGGAAAGCTTGGTCTGACCG+AGG | + | chr8.1:5420176-5420195 | MS.gene012343:CDS | 60.0% | |
| CTCCGGTGGGAGACCTGAAT+AGG | - | chr8.1:5421326-5421345 | None:intergenic | 60.0% | |
| GATGGAAGAAGGGGCGAGAG+AGG | - | chr8.1:5420683-5420702 | None:intergenic | 60.0% | |
| !! | CAGTGTCGGTGGTAAGACGG+CGG | + | chr8.1:5420025-5420044 | MS.gene012343:CDS | 60.0% |
| CATCGGCGAACGGCGTTCCT+CGG | - | chr8.1:5420196-5420215 | None:intergenic | 65.0% | |
| GACATGGGCTCTGTCTCCGG+TGG | - | chr8.1:5421340-5421359 | None:intergenic | 65.0% | |
| !! | TAAGACGGCGGCGCCGGTGA+CGG | + | chr8.1:5420037-5420056 | MS.gene012343:CDS | 70.0% |
| CGGTGGTAAGACGGCGGCGC+CGG | + | chr8.1:5420031-5420050 | MS.gene012343:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 5419837 | 5422009 | 5419837 | ID=MS.gene012343 |
| chr8.1 | mRNA | 5419837 | 5422009 | 5419837 | ID=MS.gene012343.t1;Parent=MS.gene012343 |
| chr8.1 | exon | 5419837 | 5420253 | 5419837 | ID=MS.gene012343.t1.exon1;Parent=MS.gene012343.t1 |
| chr8.1 | CDS | 5419837 | 5420253 | 5419837 | ID=cds.MS.gene012343.t1;Parent=MS.gene012343.t1 |
| chr8.1 | exon | 5421845 | 5422009 | 5421845 | ID=MS.gene012343.t1.exon2;Parent=MS.gene012343.t1 |
| chr8.1 | CDS | 5421845 | 5422009 | 5421845 | ID=cds.MS.gene012343.t1;Parent=MS.gene012343.t1 |
| Gene Sequence |
| Protein sequence |
