Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012345.t1 | XP_003610054.1 | 93.9 | 196 | 11 | 1 | 1 | 195 | 184 | 379 | 9.40E-92 | 346.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012345.t1 | Q9LU68 | 46.8 | 220 | 81 | 7 | 2 | 194 | 209 | 419 | 6.7e-30 | 132.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012345.t1 | G7JUA6 | 93.9 | 196 | 11 | 1 | 1 | 195 | 184 | 379 | 6.8e-92 | 346.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012345.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012345.t1 | MTR_4g127420 | 98.469 | 196 | 2 | 1 | 1 | 195 | 184 | 379 | 3.98e-138 | 390 |
| MS.gene012345.t1 | MTR_5g072780 | 47.009 | 117 | 57 | 3 | 78 | 194 | 99 | 210 | 1.31e-22 | 90.9 |
| MS.gene012345.t1 | MTR_7g032240 | 34.783 | 161 | 67 | 5 | 69 | 194 | 188 | 345 | 1.84e-18 | 82.0 |
| MS.gene012345.t1 | MTR_1g110870 | 44.444 | 108 | 48 | 4 | 99 | 194 | 311 | 418 | 3.30e-17 | 79.0 |
| MS.gene012345.t1 | MTR_8g104190 | 42.727 | 110 | 35 | 3 | 105 | 194 | 293 | 394 | 9.38e-16 | 74.7 |
| MS.gene012345.t1 | MTR_2g038010 | 42.105 | 114 | 42 | 5 | 16 | 124 | 217 | 311 | 5.12e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012345.t1 | AT5G57180 | 50.000 | 194 | 65 | 7 | 25 | 195 | 236 | 420 | 1.31e-44 | 153 |
| MS.gene012345.t1 | AT5G57180 | 49.741 | 193 | 65 | 7 | 25 | 194 | 236 | 419 | 8.29e-44 | 151 |
| MS.gene012345.t1 | AT4G25990 | 47.692 | 195 | 69 | 7 | 27 | 195 | 191 | 378 | 1.43e-40 | 141 |
| MS.gene012345.t1 | AT4G25990 | 47.692 | 195 | 69 | 7 | 27 | 195 | 191 | 378 | 5.05e-40 | 140 |
| MS.gene012345.t1 | AT4G25990 | 47.423 | 194 | 69 | 7 | 27 | 194 | 191 | 377 | 1.28e-39 | 139 |
| MS.gene012345.t1 | AT5G14370 | 45.370 | 108 | 38 | 4 | 103 | 194 | 228 | 330 | 2.11e-18 | 81.6 |
| MS.gene012345.t1 | AT1G07050 | 50.538 | 93 | 39 | 2 | 103 | 195 | 103 | 188 | 5.31e-18 | 78.6 |
| MS.gene012345.t1 | AT1G25440 | 36.242 | 149 | 78 | 2 | 60 | 194 | 252 | 397 | 6.29e-18 | 81.3 |
| MS.gene012345.t1 | AT1G07050 | 50.000 | 92 | 39 | 2 | 103 | 194 | 103 | 187 | 2.53e-17 | 76.6 |
| MS.gene012345.t1 | AT1G73870 | 45.370 | 108 | 45 | 3 | 101 | 194 | 274 | 381 | 2.12e-16 | 76.6 |
| MS.gene012345.t1 | AT1G68520 | 39.474 | 114 | 47 | 2 | 99 | 194 | 284 | 393 | 2.10e-15 | 73.9 |
| MS.gene012345.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.61e-14 | 71.2 |
| MS.gene012345.t1 | AT5G57180 | 37.500 | 144 | 62 | 6 | 25 | 145 | 236 | 374 | 1.61e-14 | 71.2 |
| MS.gene012345.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 187 | 307 | 1.76e-12 | 65.1 |
| MS.gene012345.t1 | AT1G49130 | 34.307 | 137 | 67 | 4 | 65 | 194 | 194 | 314 | 1.87e-12 | 65.1 |
Find 51 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCGACACTGCATATTT+TGG | 0.094471 | 8.4:+7077057 | None:intergenic |
| ATTGATCATACCTTCATTCT+TGG | 0.253571 | 8.4:+7075074 | None:intergenic |
| TCTCATCCATGGATTGGTTT+TGG | 0.279149 | 8.4:-7077193 | MS.gene012345:CDS |
| TGTCACAAATAGATTTGTTA+TGG | 0.306145 | 8.4:-7075220 | MS.gene012345:CDS |
| ACATACATTAACATCGTTTC+CGG | 0.311561 | 8.4:+7076835 | None:intergenic |
| GCCATGTTGATGAAGGAAAT+TGG | 0.353307 | 8.4:-7077117 | MS.gene012345:CDS |
| AATTGAATTACGACGGTGTT+CGG | 0.364551 | 8.4:-7076916 | MS.gene012345:CDS |
| GGGAAATTCGACTTCCGGTT+AGG | 0.378755 | 8.4:-7077169 | MS.gene012345:CDS |
| AGGAAATTGGTGGAATTTCC+CGG | 0.382166 | 8.4:-7077104 | MS.gene012345:CDS |
| AGAAAATCAGATATCAAGTT+AGG | 0.387014 | 8.4:-7075118 | MS.gene012345:CDS |
| GTCACAAATAGATTTGTTAT+GGG | 0.395534 | 8.4:-7075219 | MS.gene012345:CDS |
| TCTTCTTCTCATCCATGGAT+TGG | 0.411520 | 8.4:-7077199 | MS.gene012345:CDS |
| GAATGCAGAATTGAAAGAAA+TGG | 0.436941 | 8.4:-7076972 | MS.gene012345:CDS |
| TTGGCGGGAAATTCGACTTC+CGG | 0.439230 | 8.4:-7077174 | MS.gene012345:CDS |
| TTTCCGGAAGCATCGGAGAC+AGG | 0.440046 | 8.4:+7076851 | None:intergenic |
| TTGTTATGGGAGAATGGAGG+AGG | 0.440896 | 8.4:-7075206 | MS.gene012345:CDS |
| CACCTCTCTGTAATCCTAAC+CGG | 0.443822 | 8.4:+7077155 | None:intergenic |
| ATAGATTTGTTATGGGAGAA+TGG | 0.448843 | 8.4:-7075212 | MS.gene012345:CDS |
| CATCGGCGAACGGCGTTCCT+CGG | 0.459344 | 8.4:+7076879 | None:intergenic |
| TGGGAGAATGGAGGAGGAAG+TGG | 0.459617 | 8.4:-7075200 | MS.gene012345:CDS |
| AGCCCTGTCTCCGATGCTTC+CGG | 0.466072 | 8.4:-7076854 | MS.gene012345:CDS |
| ACGTCTCTTCTTCTCATCCA+TGG | 0.467379 | 8.4:-7077204 | MS.gene012345:CDS |
| ACGACGGTGTTCGGAAAGCT+TGG | 0.468820 | 8.4:-7076907 | MS.gene012345:CDS |
| CGGTGGTAAGACGGCGGCGC+CGG | 0.496178 | 8.4:-7077041 | MS.gene012345:CDS |
| AACATCGTTTCCGGAAGCAT+CGG | 0.505047 | 8.4:+7076844 | None:intergenic |
| ATGCAGTGTCGGTGGTAAGA+CGG | 0.515154 | 8.4:-7077050 | MS.gene012345:CDS |
| ACCAATTTCCTTCATCAACA+TGG | 0.530695 | 8.4:+7077116 | None:intergenic |
| GAATCGCCAAAGTTGAAAAG+TGG | 0.536005 | 8.4:-7076950 | MS.gene012345:CDS |
| AAAGAAGAAGGTTGTTGCGG+TGG | 0.538258 | 8.4:-7077002 | MS.gene012345:CDS |
| GCTCTTCGCCATGTTGATGA+AGG | 0.541149 | 8.4:-7077124 | MS.gene012345:CDS |
| ATCGGAGACAGGGCTGTCAT+CGG | 0.545065 | 8.4:+7076862 | None:intergenic |
| TTCCCGCCAAAACCAATCCA+TGG | 0.558777 | 8.4:+7077187 | None:intergenic |
| CGGTTAGGATTACAGAGAGG+TGG | 0.569382 | 8.4:-7077154 | MS.gene012345:CDS |
| TTCTTTGTAACGCAGCACGC+TGG | 0.571082 | 8.4:+7075166 | None:intergenic |
| TTCCGGAAGCATCGGAGACA+GGG | 0.571094 | 8.4:+7076852 | None:intergenic |
| AGATCGACGGCCAAGAATGA+AGG | 0.572545 | 8.4:-7075084 | MS.gene012345:CDS |
| AATCAGATATCAAGTTAGGA+AGG | 0.579412 | 8.4:-7075114 | MS.gene012345:CDS |
| TAAGACGGCGGCGCCGGTGA+CGG | 0.581889 | 8.4:-7077035 | MS.gene012345:CDS |
| ACAGGGCTGTCATCGGCGAA+CGG | 0.603353 | 8.4:+7076869 | None:intergenic |
| CCCAAAATATGCAGTGTCGG+TGG | 0.613838 | 8.4:-7077058 | MS.gene012345:CDS |
| CATCATGGGAGGTAGAATTG+AGG | 0.620329 | 8.4:-7077239 | None:intergenic |
| TCGCCCAAAATATGCAGTGT+CGG | 0.623873 | 8.4:-7077061 | MS.gene012345:CDS |
| GATTTGTTATGGGAGAATGG+AGG | 0.628311 | 8.4:-7075209 | MS.gene012345:CDS |
| GGAAGGTCAATGCAGATCGA+CGG | 0.632746 | 8.4:-7075097 | MS.gene012345:CDS |
| CGGAAAGCTTGGTCTGACCG+AGG | 0.657705 | 8.4:-7076896 | MS.gene012345:CDS |
| TTGTTGAAATTGAATTACGA+CGG | 0.684346 | 8.4:-7076923 | MS.gene012345:CDS |
| CAGTGTCGGTGGTAAGACGG+CGG | 0.687348 | 8.4:-7077047 | MS.gene012345:CDS |
| GGAATTGATAGCATCATGGG+AGG | 0.697923 | 8.4:-7077250 | None:intergenic |
| ATGTTGATGAAGGAAATTGG+TGG | 0.707203 | 8.4:-7077114 | MS.gene012345:CDS |
| TTCCGGTTAGGATTACAGAG+AGG | 0.750478 | 8.4:-7077157 | MS.gene012345:CDS |
| AAATTGGTGGAATTTCCCGG+CGG | 0.816024 | 8.4:-7077101 | MS.gene012345:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAGAAAACAATT+GGG | + | chr8.4:7075886-7075905 | None:intergenic | 10.0% |
| !! | TAAAATAAAAGAAAGTAATT+GGG | - | chr8.4:7076429-7076448 | MS.gene012345:intron | 10.0% |
| !! | TTAAAATAAAAGAAAACAAT+TGG | + | chr8.4:7075887-7075906 | None:intergenic | 10.0% |
| !! | TTAAAATAAAAGAAAGTAAT+TGG | - | chr8.4:7076428-7076447 | MS.gene012345:intron | 10.0% |
| !! | AAAGTAAAGTAAAAAATGAA+TGG | + | chr8.4:7076610-7076629 | None:intergenic | 15.0% |
| !! | AAGTAAAGTAAAAAATGAAT+GGG | + | chr8.4:7076609-7076628 | None:intergenic | 15.0% |
| !! | ATTCTCTTACAATATTTAAA+TGG | - | chr8.4:7076672-7076691 | MS.gene012345:intron | 15.0% |
| !! | TTCTCTTACAATATTTAAAT+GGG | - | chr8.4:7076673-7076692 | MS.gene012345:intron | 15.0% |
| !!! | TTTTTTTGTGAAATAGAAAA+AGG | + | chr8.4:7076645-7076664 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGAGAGAGA+GGG | + | chr8.4:7075691-7075710 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAAAAATGAATG+GGG | + | chr8.4:7076608-7076627 | None:intergenic | 20.0% |
| !! | AGTAGCATATGTTATAATTT+AGG | - | chr8.4:7076937-7076956 | MS.gene012345:CDS | 20.0% |
| !! | ATTTAATAGATAGTGAATGA+GGG | - | chr8.4:7077016-7077035 | MS.gene012345:CDS | 20.0% |
| !! | TATTTAATAGATAGTGAATG+AGG | - | chr8.4:7077015-7077034 | MS.gene012345:CDS | 20.0% |
| !!! | AAATTGTTGATTGATATTGT+GGG | - | chr8.4:7077058-7077077 | MS.gene012345:CDS | 20.0% |
| !!! | AAGTAAAAAGATATTTGTTG+TGG | - | chr8.4:7076726-7076745 | MS.gene012345:intron | 20.0% |
| !!! | AATTAGGTAAATTTTGTCTT+GGG | - | chr8.4:7076876-7076895 | MS.gene012345:CDS | 20.0% |
| !!! | ATGACTGTTTTTTTTTTTGT+TGG | + | chr8.4:7076527-7076546 | None:intergenic | 20.0% |
| !!! | ATTTAAAATCACAGATTGAA+GGG | + | chr8.4:7076008-7076027 | None:intergenic | 20.0% |
| !!! | TATTTAAAATCACAGATTGA+AGG | + | chr8.4:7076009-7076028 | None:intergenic | 20.0% |
| !!! | TTAAGATTTTGTCTTGAATT+AGG | - | chr8.4:7076860-7076879 | MS.gene012345:CDS | 20.0% |
| !!! | TTTTGATTTTACTCCATTAA+AGG | + | chr8.4:7075982-7076001 | None:intergenic | 20.0% |
| ! | AATAACAGATACACCTTTAA+TGG | - | chr8.4:7075966-7075985 | MS.gene012345:intron | 25.0% |
| ! | AGAAAATCAGATATCAAGTT+AGG | - | chr8.4:7077196-7077215 | MS.gene012345:CDS | 25.0% |
| ! | GAAAAAAAAAAAAGAGAGAG+AGG | + | chr8.4:7075692-7075711 | None:intergenic | 25.0% |
| ! | TCAAAATAAATCTGAACCAT+TGG | - | chr8.4:7075810-7075829 | MS.gene012345:intron | 25.0% |
| ! | TTGTTGAAATTGAATTACGA+CGG | - | chr8.4:7075391-7075410 | MS.gene012345:intron | 25.0% |
| !! | ATTTTTAATCACGTGGAATA+TGG | - | chr8.4:7075742-7075761 | MS.gene012345:intron | 25.0% |
| !! | CAAATTGTTGATTGATATTG+TGG | - | chr8.4:7077057-7077076 | MS.gene012345:CDS | 25.0% |
| !! | GAATGTGTTACTCAATAAAA+AGG | - | chr8.4:7076700-7076719 | MS.gene012345:intron | 25.0% |
| !! | GAATTAGGTAAATTTTGTCT+TGG | - | chr8.4:7076875-7076894 | MS.gene012345:CDS | 25.0% |
| !! | TTTTTAATCACGTGGAATAT+GGG | - | chr8.4:7075743-7075762 | MS.gene012345:intron | 25.0% |
| !!! | CTTTAAAATCACAGATTGAA+AGG | + | chr8.4:7076033-7076052 | None:intergenic | 25.0% |
| !!! | GATTTTAAAGCAAATTTCGA+TGG | - | chr8.4:7076043-7076062 | MS.gene012345:intron | 25.0% |
| !!! | GTCACAAATAGATTTGTTAT+GGG | - | chr8.4:7077095-7077114 | MS.gene012345:CDS | 25.0% |
| !!! | GTTTGAATACTATTGATTCA+GGG | - | chr8.4:7076282-7076301 | MS.gene012345:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | - | chr8.4:7076468-7076487 | MS.gene012345:intron | 25.0% |
| !!! | TAAGCATTTTGATCTAAAGT+TGG | + | chr8.4:7076487-7076468 | None:intergenic | 25.0% |
| !!! | TGTCACAAATAGATTTGTTA+TGG | - | chr8.4:7077094-7077113 | MS.gene012345:CDS | 25.0% |
| !!! | TGTTTGAATACTATTGATTC+AGG | - | chr8.4:7076281-7076300 | MS.gene012345:intron | 25.0% |
| !!! | TTCTTTTTTAAAGATTACCC+AGG | - | chr8.4:7075715-7075734 | MS.gene012345:intron | 25.0% |
| AAATCTGAACCATTGGATAA+GGG | - | chr8.4:7075817-7075836 | MS.gene012345:intron | 30.0% | |
| AAATGTCGGAAAGGTAATTA+AGG | + | chr8.4:7075561-7075580 | None:intergenic | 30.0% | |
| AAGCAAATTTCGATGGTTAT+AGG | - | chr8.4:7076050-7076069 | MS.gene012345:intron | 30.0% | |
| AATCAGATATCAAGTTAGGA+AGG | - | chr8.4:7077200-7077219 | MS.gene012345:CDS | 30.0% | |
| AATTGACATATGAGGGATTA+AGG | + | chr8.4:7075590-7075609 | None:intergenic | 30.0% | |
| ACAAGTACGAAAACAAAAAC+AGG | + | chr8.4:7075533-7075552 | None:intergenic | 30.0% | |
| ACATACATTAACATCGTTTC+CGG | + | chr8.4:7075482-7075501 | None:intergenic | 30.0% | |
| AGCTTCTTGTTGAATTGAAA+CGG | + | chr8.4:7076175-7076194 | None:intergenic | 30.0% | |
| CTTTGTGTAGTTTCAATAAC+CGG | - | chr8.4:7076823-7076842 | MS.gene012345:intron | 30.0% | |
| GAATGCAGAATTGAAAGAAA+TGG | - | chr8.4:7075342-7075361 | MS.gene012345:intron | 30.0% | |
| GCAAAATAAATCTGAACCAT+TGG | + | chr8.4:7076505-7076524 | None:intergenic | 30.0% | |
| GTTGTTCAATTGACATATGA+GGG | + | chr8.4:7075597-7075616 | None:intergenic | 30.0% | |
| TAAATCTGAACCATTGGATA+AGG | - | chr8.4:7075816-7075835 | MS.gene012345:intron | 30.0% | |
| TATTGCAGTAAAGAAAGAGA+AGG | + | chr8.4:7075950-7075969 | None:intergenic | 30.0% | |
| TGTTGTTCAATTGACATATG+AGG | + | chr8.4:7075598-7075617 | None:intergenic | 30.0% | |
| TTGTCTTGGGTCAAAATTAT+GGG | - | chr8.4:7076889-7076908 | MS.gene012345:CDS | 30.0% | |
| TTTGTCTTGGGTCAAAATTA+TGG | - | chr8.4:7076888-7076907 | MS.gene012345:CDS | 30.0% | |
| ! | AACAGTGTTGGAAAATCAAA+GGG | - | chr8.4:7076337-7076356 | MS.gene012345:intron | 30.0% |
| ! | ATCTGATTTTCTTAGAGATG+AGG | + | chr8.4:7077188-7077207 | None:intergenic | 30.0% |
| ! | ATTTTCCAACACTGTTATGT+TGG | + | chr8.4:7076333-7076352 | None:intergenic | 30.0% |
| ! | GTTGGTTTACATTTATCCAA+TGG | - | chr8.4:7076486-7076505 | MS.gene012345:intron | 30.0% |
| ! | TAACAGTGTTGGAAAATCAA+AGG | - | chr8.4:7076336-7076355 | MS.gene012345:intron | 30.0% |
| !! | AACAATCCACTTTTCAACTT+TGG | + | chr8.4:7075373-7075392 | None:intergenic | 30.0% |
| !! | ATAGATTTGTTATGGGAGAA+TGG | - | chr8.4:7077102-7077121 | MS.gene012345:CDS | 30.0% |
| !! | GATTAAGGTACTGAAAATGT+CGG | + | chr8.4:7075575-7075594 | None:intergenic | 30.0% |
| !!! | AACAGGTGTTGAATTTTGAT+TGG | + | chr8.4:7075516-7075535 | None:intergenic | 30.0% |
| !!! | ACAGGTGTTGAATTTTGATT+GGG | + | chr8.4:7075515-7075534 | None:intergenic | 30.0% |
| AATTGAATTACGACGGTGTT+CGG | - | chr8.4:7075398-7075417 | MS.gene012345:intron | 35.0% | |
| ACCAATTTCCTTCATCAACA+TGG | + | chr8.4:7075201-7075220 | None:intergenic | 35.0% | |
| ATCAAAGGGAAAGAATGAAG+TGG | - | chr8.4:7076351-7076370 | MS.gene012345:intron | 35.0% | |
| CTTAACATGAACATACAGTC+CGG | + | chr8.4:7076845-7076864 | None:intergenic | 35.0% | |
| GAAAAAGAAGAAGGTTGTTG+CGG | - | chr8.4:7075309-7075328 | MS.gene012345:intron | 35.0% | |
| GGAGAAGAAGAAAAAGAAGA+AGG | - | chr8.4:7075300-7075319 | MS.gene012345:intron | 35.0% | |
| GTAAAGAAAGAGAAGGAAGA+TGG | + | chr8.4:7075943-7075962 | None:intergenic | 35.0% | |
| TTCTTGTTGAATTGAAACGG+TGG | + | chr8.4:7076172-7076191 | None:intergenic | 35.0% | |
| ! | ATGTTGATGAAGGAAATTGG+TGG | - | chr8.4:7075200-7075219 | MS.gene012345:CDS | 35.0% |
| ! | ATTTTAAGCATATCAACCGC+CGG | + | chr8.4:7075232-7075251 | None:intergenic | 35.0% |
| AAAATGAATGGGGCATGACA+TGG | + | chr8.4:7076598-7076617 | None:intergenic | 40.0% | |
| AAATGAATGGGGCATGACAT+GGG | + | chr8.4:7076597-7076616 | None:intergenic | 40.0% | |
| AACAAGATCAGAGGTTACTG+GGG | - | chr8.4:7076381-7076400 | MS.gene012345:intron | 40.0% | |
| AAGAGAAGGAAGATGGAAGA+AGG | + | chr8.4:7075936-7075955 | None:intergenic | 40.0% | |
| ACAACAAGATCAGAGGTTAC+TGG | - | chr8.4:7076379-7076398 | MS.gene012345:intron | 40.0% | |
| ACGTGATTAAAAATCTCGCC+TGG | + | chr8.4:7075736-7075755 | None:intergenic | 40.0% | |
| AGAGAAGGAAGATGGAAGAA+GGG | + | chr8.4:7075935-7075954 | None:intergenic | 40.0% | |
| AGGAAATTGGTGGAATTTCC+CGG | - | chr8.4:7075210-7075229 | MS.gene012345:CDS | 40.0% | |
| CAACAAGATCAGAGGTTACT+GGG | - | chr8.4:7076380-7076399 | MS.gene012345:intron | 40.0% | |
| CGTGATTAAAAATCTCGCCT+GGG | + | chr8.4:7075735-7075754 | None:intergenic | 40.0% | |
| GAATCGCCAAAGTTGAAAAG+TGG | - | chr8.4:7075364-7075383 | MS.gene012345:intron | 40.0% | |
| TCTTCTTCTCATCCATGGAT+TGG | - | chr8.4:7075115-7075134 | MS.gene012345:CDS | 40.0% | |
| TGATTGATATTGTGGGAGAC+AGG | - | chr8.4:7077065-7077084 | MS.gene012345:CDS | 40.0% | |
| TTCCAACACTGTTATGTTGG+AGG | + | chr8.4:7076330-7076349 | None:intergenic | 40.0% | |
| ! | AGGCGAGATTTTTAATCACG+TGG | - | chr8.4:7075735-7075754 | MS.gene012345:intron | 40.0% |
| ! | GCCATGTTGATGAAGGAAAT+TGG | - | chr8.4:7075197-7075216 | MS.gene012345:CDS | 40.0% |
| ! | GTTGGTTTACCCTTATCCAA+TGG | + | chr8.4:7075829-7075848 | None:intergenic | 40.0% |
| ! | TTTTAAGCATATCAACCGCC+GGG | + | chr8.4:7075231-7075250 | None:intergenic | 40.0% |
| ! | TTTTTCTTCTTCTCCGTCAC+CGG | + | chr8.4:7075295-7075314 | None:intergenic | 40.0% |
| !! | AGGTACTGAAAATGTCGGAA+AGG | + | chr8.4:7075570-7075589 | None:intergenic | 40.0% |
| !! | GATTTGTTATGGGAGAATGG+AGG | - | chr8.4:7077105-7077124 | MS.gene012345:CDS | 40.0% |
| !!! | TCTCATCCATGGATTGGTTT+TGG | - | chr8.4:7075121-7075140 | MS.gene012345:CDS | 40.0% |
| AAAGAAGAAGGTTGTTGCGG+TGG | - | chr8.4:7075312-7075331 | MS.gene012345:intron | 45.0% | |
| AAATTGGTGGAATTTCCCGG+CGG | - | chr8.4:7075213-7075232 | MS.gene012345:CDS | 45.0% | |
| ACAGTCATGTCTCCTACCAT+AGG | - | chr8.4:7076539-7076558 | MS.gene012345:intron | 45.0% | |
| ACGTCTCTTCTTCTCATCCA+TGG | - | chr8.4:7075110-7075129 | MS.gene012345:CDS | 45.0% | |
| AGACCTGAATAGGTCACCTA+TGG | + | chr8.4:7076558-7076577 | None:intergenic | 45.0% | |
| CACCTCCAACATAACAGTGT+TGG | - | chr8.4:7076325-7076344 | MS.gene012345:intron | 45.0% | |
| CACCTCTCTGTAATCCTAAC+CGG | + | chr8.4:7075162-7075181 | None:intergenic | 45.0% | |
| CTACCATAGGTGACCTATTC+AGG | - | chr8.4:7076552-7076571 | MS.gene012345:intron | 45.0% | |
| CTGAATAGGTCACCTATGGT+AGG | + | chr8.4:7076554-7076573 | None:intergenic | 45.0% | |
| GAGAAGGAAGATGGAAGAAG+GGG | + | chr8.4:7075934-7075953 | None:intergenic | 45.0% | |
| TCGCCCAAAATATGCAGTGT+CGG | - | chr8.4:7075253-7075272 | MS.gene012345:intron | 45.0% | |
| TTCCGGTTAGGATTACAGAG+AGG | - | chr8.4:7075157-7075176 | MS.gene012345:CDS | 45.0% | |
| TTGTTATGGGAGAATGGAGG+AGG | - | chr8.4:7077108-7077127 | MS.gene012345:CDS | 45.0% | |
| ! | AACATCGTTTCCGGAAGCAT+CGG | + | chr8.4:7075473-7075492 | None:intergenic | 45.0% |
| ! | ACCACCGACACTGCATATTT+TGG | + | chr8.4:7075260-7075279 | None:intergenic | 45.0% |
| ! | CCACCGACACTGCATATTTT+GGG | + | chr8.4:7075259-7075278 | None:intergenic | 45.0% |
| !!! | ATCCATGGATTGGTTTTGGC+GGG | - | chr8.4:7075125-7075144 | MS.gene012345:CDS | 45.0% |
| !!! | CATCCATGGATTGGTTTTGG+CGG | - | chr8.4:7075124-7075143 | MS.gene012345:CDS | 45.0% |
| !! | AAAAAAAAAAGAAAAATTAA+TGG | - | chr8.4:7076120-7076139 | MS.gene012345:intron | 5.0% |
| !! | ATTATTATTTAAGTATAAAA+AGG | - | chr8.4:7076238-7076257 | MS.gene012345:intron | 5.0% |
| AGATCGACGGCCAAGAATGA+AGG | - | chr8.4:7077230-7077249 | MS.gene012345:CDS | 50.0% | |
| CGGTTAGGATTACAGAGAGG+TGG | - | chr8.4:7075160-7075179 | MS.gene012345:CDS | 50.0% | |
| GATATTGTGGGAGACAGGCA+CGG | - | chr8.4:7077070-7077089 | MS.gene012345:CDS | 50.0% | |
| GGAAGGTCAATGCAGATCGA+CGG | - | chr8.4:7077217-7077236 | MS.gene012345:CDS | 50.0% | |
| GGCAGCAACAACAAGATCAG+AGG | - | chr8.4:7076372-7076391 | MS.gene012345:intron | 50.0% | |
| GGGAAATTCGACTTCCGGTT+AGG | - | chr8.4:7075145-7075164 | MS.gene012345:CDS | 50.0% | |
| TTCCCGCCAAAACCAATCCA+TGG | + | chr8.4:7075130-7075149 | None:intergenic | 50.0% | |
| TTCTTTGTAACGCAGCACGC+TGG | + | chr8.4:7077151-7077170 | None:intergenic | 50.0% | |
| TTGGCGGGAAATTCGACTTC+CGG | - | chr8.4:7075140-7075159 | MS.gene012345:CDS | 50.0% | |
| ! | CCCAAAATATGCAGTGTCGG+TGG | - | chr8.4:7075256-7075275 | MS.gene012345:intron | 50.0% |
| ! | GCTCTTCGCCATGTTGATGA+AGG | - | chr8.4:7075190-7075209 | MS.gene012345:CDS | 50.0% |
| !! | ATGCAGTGTCGGTGGTAAGA+CGG | - | chr8.4:7075264-7075283 | MS.gene012345:intron | 50.0% |
| ACGACGGTGTTCGGAAAGCT+TGG | - | chr8.4:7075407-7075426 | MS.gene012345:intron | 55.0% | |
| AGAGGTTACTGGGGTGAGAG+AGG | - | chr8.4:7076390-7076409 | MS.gene012345:intron | 55.0% | |
| ATCGGAGACAGGGCTGTCAT+CGG | + | chr8.4:7075455-7075474 | None:intergenic | 55.0% | |
| CATGACATGGGCTCTGTCTC+CGG | + | chr8.4:7076585-7076604 | None:intergenic | 55.0% | |
| GACCTATTCAGGTCTCCCAC+CGG | - | chr8.4:7076563-7076582 | MS.gene012345:intron | 55.0% | |
| TGGGAGAATGGAGGAGGAAG+TGG | - | chr8.4:7077114-7077133 | MS.gene012345:CDS | 55.0% | |
| !! | TTCCGGAAGCATCGGAGACA+GGG | + | chr8.4:7075465-7075484 | None:intergenic | 55.0% |
| !! | TTTCCGGAAGCATCGGAGAC+AGG | + | chr8.4:7075466-7075485 | None:intergenic | 55.0% |
| ACAGGGCTGTCATCGGCGAA+CGG | + | chr8.4:7075448-7075467 | None:intergenic | 60.0% | |
| ACATGGGCTCTGTCTCCGGT+GGG | + | chr8.4:7076581-7076600 | None:intergenic | 60.0% | |
| AGCCCTGTCTCCGATGCTTC+CGG | - | chr8.4:7075460-7075479 | MS.gene012345:intron | 60.0% | |
| AGGGGCGAGAGAGGAAAGAG+AGG | + | chr8.4:7075916-7075935 | None:intergenic | 60.0% | |
| CGGAAAGCTTGGTCTGACCG+AGG | - | chr8.4:7075418-7075437 | MS.gene012345:intron | 60.0% | |
| CTCCGGTGGGAGACCTGAAT+AGG | + | chr8.4:7076568-7076587 | None:intergenic | 60.0% | |
| GATGGAAGAAGGGGCGAGAG+AGG | + | chr8.4:7075925-7075944 | None:intergenic | 60.0% | |
| !! | CAGTGTCGGTGGTAAGACGG+CGG | - | chr8.4:7075267-7075286 | MS.gene012345:intron | 60.0% |
| CATCGGCGAACGGCGTTCCT+CGG | + | chr8.4:7075438-7075457 | None:intergenic | 65.0% | |
| GACATGGGCTCTGTCTCCGG+TGG | + | chr8.4:7076582-7076601 | None:intergenic | 65.0% | |
| !! | TAAGACGGCGGCGCCGGTGA+CGG | - | chr8.4:7075279-7075298 | MS.gene012345:intron | 70.0% |
| CGGTGGTAAGACGGCGGCGC+CGG | - | chr8.4:7075273-7075292 | MS.gene012345:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7075079 | 7077257 | 7075079 | ID=MS.gene012345 |
| chr8.4 | mRNA | 7075079 | 7077257 | 7075079 | ID=MS.gene012345.t1;Parent=MS.gene012345 |
| chr8.4 | exon | 7076841 | 7077257 | 7076841 | ID=MS.gene012345.t1.exon1;Parent=MS.gene012345.t1 |
| chr8.4 | CDS | 7076841 | 7077257 | 7076841 | ID=cds.MS.gene012345.t1;Parent=MS.gene012345.t1 |
| chr8.4 | exon | 7075079 | 7075249 | 7075079 | ID=MS.gene012345.t1.exon2;Parent=MS.gene012345.t1 |
| chr8.4 | CDS | 7075079 | 7075249 | 7075079 | ID=cds.MS.gene012345.t1;Parent=MS.gene012345.t1 |
| Gene Sequence |
| Protein sequence |
