Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012457.t1 | XP_003610239.2 | 94.3 | 265 | 15 | 0 | 1 | 265 | 1 | 265 | 1.10E-138 | 502.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012457.t1 | G7JEC2 | 94.3 | 265 | 15 | 0 | 1 | 265 | 1 | 265 | 7.7e-139 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012457.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012457.t1 | MTR_4g129490 | 94.340 | 265 | 15 | 0 | 1 | 265 | 1 | 265 | 0.0 | 521 |
| MS.gene012457.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 106 | 277 | 5.99e-13 | 67.4 |
| MS.gene012457.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 5 | 58 | 236 | 106 | 277 | 6.69e-13 | 67.8 |
| MS.gene012457.t1 | MTR_2g041620 | 29.255 | 188 | 108 | 6 | 58 | 236 | 94 | 265 | 7.58e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012457.t1 | AT4G28030 | 64.831 | 236 | 83 | 0 | 27 | 262 | 31 | 266 | 1.61e-114 | 330 |
| MS.gene012457.t1 | AT4G28030 | 61.017 | 236 | 81 | 1 | 27 | 262 | 31 | 255 | 4.82e-103 | 300 |
| MS.gene012457.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.90e-16 | 77.0 |
| MS.gene012457.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.90e-16 | 77.0 |
| MS.gene012457.t1 | AT2G06025 | 30.481 | 187 | 107 | 4 | 58 | 236 | 95 | 266 | 2.90e-16 | 77.0 |
Find 50 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTAAGGAGCGTGTTTC+AGG | 0.154494 | 8.3:-2066699 | MS.gene012457:CDS |
| CAAAGTCAGTTGCTCGTAAT+TGG | 0.193463 | 8.3:-2065836 | MS.gene012457:CDS |
| CTTTCTACGATGATGAATTC+TGG | 0.240043 | 8.3:-2066971 | MS.gene012457:CDS |
| TTCATGTACAATTTCTTTGC+TGG | 0.253198 | 8.3:+2063928 | None:intergenic |
| GTTAATGCAGAATTTGAAAA+TGG | 0.275846 | 8.3:+2067095 | None:intergenic |
| CGTAAGTGTCTGGACGAAAT+TGG | 0.337880 | 8.3:+2066916 | None:intergenic |
| AGGATTGGAATTGAGTTCTA+AGG | 0.340792 | 8.3:+2067057 | None:intergenic |
| GCTAGAGAGTTGCACAGAAA+TGG | 0.349757 | 8.3:-2065885 | MS.gene012457:CDS |
| AAAGTCAGTTGCTCGTAATT+GGG | 0.384466 | 8.3:-2065835 | MS.gene012457:CDS |
| AGTCTTCCTGATGAAATTGT+AGG | 0.385815 | 8.3:-2066396 | MS.gene012457:CDS |
| TGATTTATGTTCTTCATGTA+AGG | 0.404309 | 8.3:-2066601 | MS.gene012457:intron |
| ACGTGAGTTTGAAGCACTTA+AGG | 0.420143 | 8.3:-2066712 | MS.gene012457:CDS |
| AATGGAGAAGATGAATGAAT+TGG | 0.432279 | 8.3:+2067113 | None:intergenic |
| TTTCTACGATGATGAATTCT+GGG | 0.435140 | 8.3:-2066970 | MS.gene012457:CDS |
| CTAGAGAGTTGCACAGAAAT+GGG | 0.439454 | 8.3:-2065884 | MS.gene012457:CDS |
| ACTTGGACTCCGTAAGTGTC+TGG | 0.451152 | 8.3:+2066906 | None:intergenic |
| TTCATCCCTACAATTTCATC+AGG | 0.451868 | 8.3:+2066390 | None:intergenic |
| CAATTTCGTCCAGACACTTA+CGG | 0.474222 | 8.3:-2066915 | MS.gene012457:CDS |
| GAGTGATGAGCCTGCATGGC+AGG | 0.475010 | 8.3:-2063887 | MS.gene012457:CDS |
| AGAAACCTTGCCTGCCATGC+AGG | 0.481695 | 8.3:+2063877 | None:intergenic |
| GGAGAAGATGAATGAATTGG+AGG | 0.499020 | 8.3:+2067116 | None:intergenic |
| ATTCTGCTAGTGGAGAAGAC+AGG | 0.503889 | 8.3:-2066455 | MS.gene012457:CDS |
| AATGTTTATGGAAGAAGCAT+AGG | 0.510788 | 8.3:+2067037 | None:intergenic |
| GGAGAAGACAGGGTTGTAGT+TGG | 0.511921 | 8.3:-2066444 | MS.gene012457:CDS |
| CTTTGCTGGTTCATTGTCAA+CGG | 0.514602 | 8.3:+2063942 | None:intergenic |
| CACTTAAGGAGCGTGTTTCA+GGG | 0.519287 | 8.3:-2066698 | MS.gene012457:CDS |
| CTAGTGGAGCTGATACTACA+AGG | 0.523464 | 8.3:-2065932 | MS.gene012457:CDS |
| TTATGGAAGAAGCATAGGAT+TGG | 0.526352 | 8.3:+2067042 | None:intergenic |
| AGAAATTGTACATGAAGAGC+GGG | 0.527874 | 8.3:-2063921 | MS.gene012457:CDS |
| ATGAGCCTGCATGGCAGGCA+AGG | 0.531331 | 8.3:-2063882 | MS.gene012457:CDS |
| TTAGGATCATGCTAAGTACT+TGG | 0.533106 | 8.3:-2066739 | MS.gene012457:intron |
| GTCTGGACGAAATTGGTTGA+AGG | 0.533997 | 8.3:+2066923 | None:intergenic |
| GCGAAGACTTCTGCTATGGA+TGG | 0.537747 | 8.3:-2063845 | MS.gene012457:CDS |
| ATCCATAGCAGAAGTCTTCG+CGG | 0.537820 | 8.3:+2063847 | None:intergenic |
| TTGGAATTGAGTTCTAAGGT+TGG | 0.544506 | 8.3:+2067061 | None:intergenic |
| AAGAAATTGTACATGAAGAG+CGG | 0.548993 | 8.3:-2063922 | MS.gene012457:CDS |
| GACCGCGAAGACTTCTGCTA+TGG | 0.554635 | 8.3:-2063849 | MS.gene012457:CDS |
| AGGCTAGATAAATGTGACAT+AGG | 0.565192 | 8.3:+2066630 | None:intergenic |
| AGAGTTGCACAGAAATGGGT+TGG | 0.578468 | 8.3:-2065880 | MS.gene012457:CDS |
| AAGTCAGTTGCTCGTAATTG+GGG | 0.584670 | 8.3:-2065834 | MS.gene012457:intron |
| GTCTTCCTGATGAAATTGTA+GGG | 0.587974 | 8.3:-2066395 | MS.gene012457:CDS |
| AAGAACATAAATCATCATAG+AGG | 0.592116 | 8.3:+2066610 | None:intergenic |
| CGAAGACTTCTGCTATGGAT+GGG | 0.593997 | 8.3:-2063844 | MS.gene012457:CDS |
| TTCTGCTAGTGGAGAAGACA+GGG | 0.600017 | 8.3:-2066454 | MS.gene012457:CDS |
| GTTCATTGTCAACGGCAACA+TGG | 0.600217 | 8.3:+2063950 | None:intergenic |
| GAAGGAACGAACACGAAGAG+AGG | 0.628307 | 8.3:+2066941 | None:intergenic |
| ATGAGAGTGATGAGCCTGCA+TGG | 0.635422 | 8.3:-2063891 | MS.gene012457:CDS |
| TTCAGCGATTGTGATCAAAG+AGG | 0.684752 | 8.3:+2066995 | None:intergenic |
| TAGTGGAGCTGATACTACAA+GGG | 0.712956 | 8.3:-2065931 | MS.gene012457:CDS |
| AATTGTAGGGATGAAGCCAG+AGG | 0.725736 | 8.3:-2066382 | MS.gene012457:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGAAAGAAAAAAAA+TGG | + | chr8.3:2064107-2064126 | None:intergenic | 10.0% |
| !! | AATATTCATAACTATTATAT+TGG | - | chr8.3:2066081-2066100 | MS.gene012457:intron | 10.0% |
| !! | TTATGAATATTGAAATTATT+TGG | + | chr8.3:2066072-2066091 | None:intergenic | 10.0% |
| !!! | ATGTTTATATTTTTCTTAAT+GGG | - | chr8.3:2066366-2066385 | MS.gene012457:intron | 10.0% |
| !! | TAAAACATTATACAATTTGA+TGG | + | chr8.3:2065014-2065033 | None:intergenic | 15.0% |
| !! | TGTAATGTATATTTGTTTAT+CGG | - | chr8.3:2064437-2064456 | MS.gene012457:intron | 15.0% |
| !! | TTATATGAAAACAATTGATT+TGG | + | chr8.3:2064748-2064767 | None:intergenic | 15.0% |
| !!! | AATATTCAGAACTTTTATAT+TGG | - | chr8.3:2065784-2065803 | MS.gene012457:intron | 15.0% |
| !!! | ATTAGCTATTTTTATAACAA+AGG | - | chr8.3:2064716-2064735 | MS.gene012457:intron | 15.0% |
| !!! | GATGTTTATATTTTTCTTAA+TGG | - | chr8.3:2066365-2066384 | MS.gene012457:intron | 15.0% |
| !!! | GCAATATTTTGATTATTAAT+AGG | + | chr8.3:2065979-2065998 | None:intergenic | 15.0% |
| !! | AAAAGAAAATCTAATCAACT+AGG | + | chr8.3:2066722-2066741 | None:intergenic | 20.0% |
| !! | AAAGAAAATCTAATCAACTA+GGG | + | chr8.3:2066721-2066740 | None:intergenic | 20.0% |
| !! | ATGCTATCTTAAAATATAAC+TGG | + | chr8.3:2066340-2066359 | None:intergenic | 20.0% |
| !! | ATGTATAAAAAAAATACCTC+TGG | + | chr8.3:2064611-2064630 | None:intergenic | 20.0% |
| !! | TTTCCATTGAATTAAAATCA+AGG | + | chr8.3:2064410-2064429 | None:intergenic | 20.0% |
| !!! | AAATTGTTTTCTATGATGTT+TGG | + | chr8.3:2066776-2066795 | None:intergenic | 20.0% |
| !!! | AACATCATAGAAAACAATTT+TGG | - | chr8.3:2066776-2066795 | MS.gene012457:intron | 20.0% |
| !!! | TAGTTCTTTTGTAAATAGTA+GGG | - | chr8.3:2066240-2066259 | MS.gene012457:intron | 20.0% |
| !!! | TTAGTTCTTTTGTAAATAGT+AGG | - | chr8.3:2066239-2066258 | MS.gene012457:intron | 20.0% |
| !!! | TTTCCTTGATTTTAATTCAA+TGG | - | chr8.3:2064404-2064423 | MS.gene012457:intron | 20.0% |
| ! | AACATTATACAATTTGATGG+AGG | + | chr8.3:2065011-2065030 | None:intergenic | 25.0% |
| ! | AAGAAAATCTAATCAACTAG+GGG | + | chr8.3:2066720-2066739 | None:intergenic | 25.0% |
| ! | AAGAACATAAATCATCATAG+AGG | + | chr8.3:2064367-2064386 | None:intergenic | 25.0% |
| ! | AATACAAATGGTTAGGATTA+AGG | + | chr8.3:2065379-2065398 | None:intergenic | 25.0% |
| ! | ACATTTCTTAAACCAAAAAG+TGG | - | chr8.3:2066950-2066969 | MS.gene012457:CDS | 25.0% |
| ! | ATCTACAGTTCATGAAAAAA+TGG | - | chr8.3:2066397-2066416 | MS.gene012457:CDS | 25.0% |
| ! | GATCAAGATCATATGAAATT+TGG | + | chr8.3:2066470-2066489 | None:intergenic | 25.0% |
| ! | GTTAATGCAGAATTTGAAAA+TGG | + | chr8.3:2063882-2063901 | None:intergenic | 25.0% |
| ! | TATATTTGTTTATCGGTCTT+TGG | - | chr8.3:2064444-2064463 | MS.gene012457:intron | 25.0% |
| ! | TATTCATGAGTATATGAACT+AGG | - | chr8.3:2066890-2066909 | MS.gene012457:intron | 25.0% |
| ! | TGACTAAATTGAGCAAAATT+AGG | + | chr8.3:2065679-2065698 | None:intergenic | 25.0% |
| ! | TGATTTATGTTCTTCATGTA+AGG | - | chr8.3:2064373-2064392 | MS.gene012457:intron | 25.0% |
| ! | TGTTCCAAATTGATAAACAA+TGG | - | chr8.3:2066504-2066523 | MS.gene012457:intron | 25.0% |
| ! | TTATTAATAGGACCCAAATT+TGG | + | chr8.3:2065967-2065986 | None:intergenic | 25.0% |
| ! | TTGAACTTGATTAGATATCA+GGG | - | chr8.3:2065343-2065362 | MS.gene012457:intron | 25.0% |
| ! | TTGCTCAATTTAGTCATTAT+TGG | - | chr8.3:2065683-2065702 | MS.gene012457:intron | 25.0% |
| !! | AATTGTTCATACATTTGTTG+CGG | - | chr8.3:2066824-2066843 | MS.gene012457:intron | 25.0% |
| !! | AATTTAGTTCAATACAGTTC+CGG | + | chr8.3:2066668-2066687 | None:intergenic | 25.0% |
| !! | AGACTTTCATTGTTTTCATT+AGG | - | chr8.3:2065904-2065923 | MS.gene012457:CDS | 25.0% |
| !! | ATTTTATAGTATTCTGCTAG+TGG | - | chr8.3:2064509-2064528 | MS.gene012457:intron | 25.0% |
| !! | ATTTTCCGTATCAATACAAA+TGG | + | chr8.3:2065391-2065410 | None:intergenic | 25.0% |
| !! | GAAAATTGATAACTCTTCTA+TGG | - | chr8.3:2064964-2064983 | MS.gene012457:intron | 25.0% |
| !! | TAAGTACCAAATCCTTTTAA+AGG | + | chr8.3:2065319-2065338 | None:intergenic | 25.0% |
| !! | TTGTATAATGTTTTACTGTC+AGG | - | chr8.3:2065019-2065038 | MS.gene012457:intron | 25.0% |
| !!! | ATATTTTTCTTAATGGGTTG+AGG | - | chr8.3:2066372-2066391 | MS.gene012457:intron | 25.0% |
| !!! | ATTTTGAAATCTGTTGACAA+TGG | + | chr8.3:2066541-2066560 | None:intergenic | 25.0% |
| !!! | GACTTTAATTGTTTTGAGTA+CGG | - | chr8.3:2065616-2065635 | MS.gene012457:intron | 25.0% |
| AAAATGAACACGTGTAAAGA+AGG | - | chr8.3:2065406-2065425 | MS.gene012457:intron | 30.0% | |
| AAGAAATTGTACATGAAGAG+CGG | - | chr8.3:2067052-2067071 | MS.gene012457:CDS | 30.0% | |
| AAGCACTTAAGAAACTGTTT+GGG | + | chr8.3:2064865-2064884 | None:intergenic | 30.0% | |
| AATGGAGAAGATGAATGAAT+TGG | + | chr8.3:2063864-2063883 | None:intergenic | 30.0% | |
| ATCATCCAAAACAAGCTTAA+GGG | + | chr8.3:2064924-2064943 | None:intergenic | 30.0% | |
| ATTACCAGTTAGATTCTATC+AGG | - | chr8.3:2065259-2065278 | MS.gene012457:intron | 30.0% | |
| CGTACCATTGTTTATCAATT+TGG | + | chr8.3:2066511-2066530 | None:intergenic | 30.0% | |
| CTTTATATATGATCCATGCT+AGG | - | chr8.3:2065537-2065556 | MS.gene012457:intron | 30.0% | |
| GTTGAACTTGATTAGATATC+AGG | - | chr8.3:2065342-2065361 | MS.gene012457:intron | 30.0% | |
| GTTTGGATTGTGATAAAAGA+TGG | - | chr8.3:2064188-2064207 | MS.gene012457:intron | 30.0% | |
| TAAGACTTCCTAATTATCAC+TGG | + | chr8.3:2066006-2066025 | None:intergenic | 30.0% | |
| TAAGCACTTAAGAAACTGTT+TGG | + | chr8.3:2064866-2064885 | None:intergenic | 30.0% | |
| TGATAGAATCTAACTGGTAA+TGG | + | chr8.3:2065260-2065279 | None:intergenic | 30.0% | |
| TTACCAGTTAGATTCTATCA+GGG | - | chr8.3:2065260-2065279 | MS.gene012457:intron | 30.0% | |
| TTAGCTACTGAATTGCAAAA+GGG | - | chr8.3:2064162-2064181 | MS.gene012457:intron | 30.0% | |
| TTCATGTACAATTTCTTTGC+TGG | + | chr8.3:2067049-2067068 | None:intergenic | 30.0% | |
| TTTAGCTACTGAATTGCAAA+AGG | - | chr8.3:2064161-2064180 | MS.gene012457:intron | 30.0% | |
| TTTCTACGATGATGAATTCT+GGG | - | chr8.3:2064004-2064023 | MS.gene012457:intron | 30.0% | |
| ! | AATGTTTATGGAAGAAGCAT+AGG | + | chr8.3:2063940-2063959 | None:intergenic | 30.0% |
| ! | ATCAATAAGACTCATTTTGC+AGG | + | chr8.3:2065827-2065846 | None:intergenic | 30.0% |
| ! | CCTAACCATTTGTATTGATA+CGG | - | chr8.3:2065383-2065402 | MS.gene012457:intron | 30.0% |
| ! | CTTATTGATGACAGTAGTAA+TGG | - | chr8.3:2065838-2065857 | MS.gene012457:CDS | 30.0% |
| ! | GATCTAGGTTTGGTTATATT+TGG | - | chr8.3:2066603-2066622 | MS.gene012457:CDS | 30.0% |
| ! | GCATAAATAGACCATTTTCA+AGG | + | chr8.3:2065215-2065234 | None:intergenic | 30.0% |
| ! | TCAATAAGACTCATTTTGCA+GGG | + | chr8.3:2065826-2065845 | None:intergenic | 30.0% |
| !! | GTTTCCATAAACTTGTTATC+CGG | - | chr8.3:2066646-2066665 | MS.gene012457:CDS | 30.0% |
| !!! | ATTTTAGAGTGCCTATAACT+TGG | + | chr8.3:2066862-2066881 | None:intergenic | 30.0% |
| !!! | TTTTTGGGTGCAAATGTTTA+TGG | + | chr8.3:2063952-2063971 | None:intergenic | 30.0% |
| AAAGTCAGTTGCTCGTAATT+GGG | - | chr8.3:2065139-2065158 | MS.gene012457:intron | 35.0% | |
| ACAGGCAGTCAAATAAAAAC+AGG | + | chr8.3:2066427-2066446 | None:intergenic | 35.0% | |
| AGAAACAGTCAACTGCTAAA+TGG | - | chr8.3:2065165-2065184 | MS.gene012457:intron | 35.0% | |
| AGAAATTGTACATGAAGAGC+GGG | - | chr8.3:2067053-2067072 | MS.gene012457:CDS | 35.0% | |
| AGGATTGGAATTGAGTTCTA+AGG | + | chr8.3:2063920-2063939 | None:intergenic | 35.0% | |
| AGGCTAGATAAATGTGACAT+AGG | + | chr8.3:2064347-2064366 | None:intergenic | 35.0% | |
| AGTCTTCCTGATGAAATTGT+AGG | - | chr8.3:2064578-2064597 | MS.gene012457:intron | 35.0% | |
| AGTTCCGGATAACAAGTTTA+TGG | + | chr8.3:2066653-2066672 | None:intergenic | 35.0% | |
| ATGGAGTGAAAAAACTCACT+TGG | + | chr8.3:2064088-2064107 | None:intergenic | 35.0% | |
| ATTCCCTGATAGAATCTAAC+TGG | + | chr8.3:2065266-2065285 | None:intergenic | 35.0% | |
| ATTGTCATGTAGAAATCCCA+GGG | + | chr8.3:2066921-2066940 | None:intergenic | 35.0% | |
| ATTTGTGTTTATGTCCTGTC+CGG | - | chr8.3:2064657-2064676 | MS.gene012457:intron | 35.0% | |
| CCATGTAGATTCCAAGTTAT+AGG | - | chr8.3:2066848-2066867 | MS.gene012457:intron | 35.0% | |
| CCGTATCAATACAAATGGTT+AGG | + | chr8.3:2065386-2065405 | None:intergenic | 35.0% | |
| CCTATAACTTGGAATCTACA+TGG | + | chr8.3:2066851-2066870 | None:intergenic | 35.0% | |
| CCTCCAAATCAAAACTTATG+TGG | + | chr8.3:2065433-2065452 | None:intergenic | 35.0% | |
| CGCAACATGAAAAACATAAC+TGG | + | chr8.3:2066295-2066314 | None:intergenic | 35.0% | |
| CTTTCTACGATGATGAATTC+TGG | - | chr8.3:2064003-2064022 | MS.gene012457:intron | 35.0% | |
| GATCATCCAAAACAAGCTTA+AGG | + | chr8.3:2064925-2064944 | None:intergenic | 35.0% | |
| GATCGACGTTACAAATTTAC+AGG | + | chr8.3:2066445-2066464 | None:intergenic | 35.0% | |
| GATCTTGATCTCGAACATAA+TGG | - | chr8.3:2066480-2066499 | MS.gene012457:intron | 35.0% | |
| GTCTTCCTGATGAAATTGTA+GGG | - | chr8.3:2064579-2064598 | MS.gene012457:intron | 35.0% | |
| GTTGTTTACATAAGCTGTCA+TGG | - | chr8.3:2064775-2064794 | MS.gene012457:intron | 35.0% | |
| TAGGGTAACTGTCATAATCA+TGG | - | chr8.3:2066258-2066277 | MS.gene012457:intron | 35.0% | |
| TCAATCGTACTTGTAAGTGT+TGG | - | chr8.3:2065286-2065305 | MS.gene012457:intron | 35.0% | |
| TCCATATTTGTGTGTCTTTC+AGG | - | chr8.3:2066983-2067002 | MS.gene012457:CDS | 35.0% | |
| TTAGGATCATGCTAAGTACT+TGG | - | chr8.3:2064235-2064254 | MS.gene012457:intron | 35.0% | |
| TTCATCCCTACAATTTCATC+AGG | + | chr8.3:2064587-2064606 | None:intergenic | 35.0% | |
| TTGAGCAAAATTAGGTGAGT+AGG | + | chr8.3:2065671-2065690 | None:intergenic | 35.0% | |
| TTGCATGTCCAGTGATAATT+AGG | - | chr8.3:2065995-2066014 | MS.gene012457:intron | 35.0% | |
| TTTACCTGCTCACCAAATTT+GGG | - | chr8.3:2065952-2065971 | MS.gene012457:intron | 35.0% | |
| ! | ATAAGCCTTTGTCGTTTATC+CGG | + | chr8.3:2064679-2064698 | None:intergenic | 35.0% |
| ! | CTTGTGCCTTTAAAAGGATT+TGG | - | chr8.3:2065310-2065329 | MS.gene012457:intron | 35.0% |
| ! | TGATTTGGAGGATAGTTCAT+AGG | - | chr8.3:2065442-2065461 | MS.gene012457:intron | 35.0% |
| ! | TGTTTTCACTGCCTTGAAAA+TGG | - | chr8.3:2065201-2065220 | MS.gene012457:intron | 35.0% |
| ! | TTATGGAAGAAGCATAGGAT+TGG | + | chr8.3:2063935-2063954 | None:intergenic | 35.0% |
| !! | ATCTCTAAGACTTCGTATCA+TGG | + | chr8.3:2065714-2065733 | None:intergenic | 35.0% |
| !! | CTATGATGTTTGGTTCTTCA+TGG | + | chr8.3:2066766-2066785 | None:intergenic | 35.0% |
| !! | GAGTCAATGTAACCACTTTT+TGG | + | chr8.3:2066965-2066984 | None:intergenic | 35.0% |
| !! | TCTCTAAGACTTCGTATCAT+GGG | + | chr8.3:2065713-2065732 | None:intergenic | 35.0% |
| !! | TGTGTGATGATAATGGTGTT+TGG | + | chr8.3:2066697-2066716 | None:intergenic | 35.0% |
| !! | TTGGAATTGAGTTCTAAGGT+TGG | + | chr8.3:2063916-2063935 | None:intergenic | 35.0% |
| !!! | CAAAGAGGTGTCGATTTTTT+GGG | + | chr8.3:2063967-2063986 | None:intergenic | 35.0% |
| !!! | CCACATAAGTTTTGATTTGG+AGG | - | chr8.3:2065430-2065449 | MS.gene012457:intron | 35.0% |
| !!! | GGTCCACATAAGTTTTGATT+TGG | - | chr8.3:2065427-2065446 | MS.gene012457:intron | 35.0% |
| !!! | TCAAAGAGGTGTCGATTTTT+TGG | + | chr8.3:2063968-2063987 | None:intergenic | 35.0% |
| AAGTCAGTTGCTCGTAATTG+GGG | - | chr8.3:2065140-2065159 | MS.gene012457:intron | 40.0% | |
| ATGATCCATGCTAGGAGTTA+AGG | - | chr8.3:2065545-2065564 | MS.gene012457:intron | 40.0% | |
| ATGTAACCAACTTCGTCTAG+TGG | - | chr8.3:2065877-2065896 | MS.gene012457:CDS | 40.0% | |
| CAAAGTCAGTTGCTCGTAAT+TGG | - | chr8.3:2065138-2065157 | MS.gene012457:intron | 40.0% | |
| CAATTTCGTCCAGACACTTA+CGG | - | chr8.3:2064059-2064078 | MS.gene012457:intron | 40.0% | |
| CATTGTCATGTAGAAATCCC+AGG | + | chr8.3:2066922-2066941 | None:intergenic | 40.0% | |
| CGTGTTTGTCAAGTTCTGTT+AGG | - | chr8.3:2064217-2064236 | MS.gene012457:intron | 40.0% | |
| CTAGAGAGTTGCACAGAAAT+GGG | - | chr8.3:2065090-2065109 | MS.gene012457:intron | 40.0% | |
| CTTTACCTGCTCACCAAATT+TGG | - | chr8.3:2065951-2065970 | MS.gene012457:intron | 40.0% | |
| GAGGATAGTTCATAGGTTAG+AGG | - | chr8.3:2065449-2065468 | MS.gene012457:intron | 40.0% | |
| GATAGCCAACTTTGTCTAGT+CGG | - | chr8.3:2065589-2065608 | MS.gene012457:intron | 40.0% | |
| GCCTGAAAGACACACAAATA+TGG | + | chr8.3:2066987-2067006 | None:intergenic | 40.0% | |
| GGAGAAGATGAATGAATTGG+AGG | + | chr8.3:2063861-2063880 | None:intergenic | 40.0% | |
| TAGTGGAGCTGATACTACAA+GGG | - | chr8.3:2065043-2065062 | MS.gene012457:intron | 40.0% | |
| TGATCCATGCTAGGAGTTAA+GGG | - | chr8.3:2065546-2065565 | MS.gene012457:intron | 40.0% | |
| TGTAACCAACTTCGTCTAGT+GGG | - | chr8.3:2065878-2065897 | MS.gene012457:CDS | 40.0% | |
| TTCAGCGATTGTGATCAAAG+AGG | + | chr8.3:2063982-2064001 | None:intergenic | 40.0% | |
| ! | AACAAGCTTAAGGGCATGTA+TGG | + | chr8.3:2064915-2064934 | None:intergenic | 40.0% |
| ! | ACGTGAGTTTGAAGCACTTA+AGG | - | chr8.3:2064262-2064281 | MS.gene012457:intron | 40.0% |
| ! | ACTAGACGAAGTTGGTTACA+TGG | + | chr8.3:2065878-2065897 | None:intergenic | 40.0% |
| ! | ATGTTTTACTGTCAGGCTAG+TGG | - | chr8.3:2065026-2065045 | MS.gene012457:intron | 40.0% |
| ! | GAATTGCAAAAGGGTGTGTT+TGG | - | chr8.3:2064171-2064190 | MS.gene012457:intron | 40.0% |
| ! | GTTATATTTGGCTCGCAGTA+GGG | - | chr8.3:2066615-2066634 | MS.gene012457:CDS | 40.0% |
| ! | TCAACGAGACTCGTTTTGTA+GGG | + | chr8.3:2066123-2066142 | None:intergenic | 40.0% |
| ! | TTATATTTGGCTCGCAGTAG+GGG | - | chr8.3:2066616-2066635 | MS.gene012457:CDS | 40.0% |
| ! | TTTCTAGCAGACAAGTCTCT+TGG | + | chr8.3:2066173-2066192 | None:intergenic | 40.0% |
| !! | AATCTAACTGGTAATGGCAG+TGG | + | chr8.3:2065254-2065273 | None:intergenic | 40.0% |
| !! | ACATGCCCTTAAGCTTGTTT+TGG | - | chr8.3:2064916-2064935 | MS.gene012457:intron | 40.0% |
| !! | CTTTGCTGGTTCATTGTCAA+CGG | + | chr8.3:2067035-2067054 | None:intergenic | 40.0% |
| !! | GTTGGTCTTGTGCCTTTAAA+AGG | - | chr8.3:2065304-2065323 | MS.gene012457:intron | 40.0% |
| AACACCCTTAACTCCTAGCA+TGG | + | chr8.3:2065553-2065572 | None:intergenic | 45.0% | |
| AAGCTGTCATGGAGAGCTTA+TGG | - | chr8.3:2064786-2064805 | MS.gene012457:intron | 45.0% | |
| AATTGTAGGGATGAAGCCAG+AGG | - | chr8.3:2064592-2064611 | MS.gene012457:intron | 45.0% | |
| AGAGTTGCACAGAAATGGGT+TGG | - | chr8.3:2065094-2065113 | MS.gene012457:intron | 45.0% | |
| ATATGAACTAGGCAAGACCC+TGG | - | chr8.3:2066901-2066920 | MS.gene012457:intron | 45.0% | |
| ATCCATAGCAGAAGTCTTCG+CGG | + | chr8.3:2067130-2067149 | None:intergenic | 45.0% | |
| ATTCTGCTAGTGGAGAAGAC+AGG | - | chr8.3:2064519-2064538 | MS.gene012457:intron | 45.0% | |
| CGAAGACTTCTGCTATGGAT+GGG | - | chr8.3:2067130-2067149 | MS.gene012457:CDS | 45.0% | |
| CGTAAGTGTCTGGACGAAAT+TGG | + | chr8.3:2064061-2064080 | None:intergenic | 45.0% | |
| CGTGTTTCAGGGAAAAAGAC+GGG | - | chr8.3:2064287-2064306 | MS.gene012457:intron | 45.0% | |
| CTAGTGGAGCTGATACTACA+AGG | - | chr8.3:2065042-2065061 | MS.gene012457:intron | 45.0% | |
| CTTCTCCGACTAGACAAAGT+TGG | + | chr8.3:2065597-2065616 | None:intergenic | 45.0% | |
| GCGTGTTTCAGGGAAAAAGA+CGG | - | chr8.3:2064286-2064305 | MS.gene012457:intron | 45.0% | |
| GCTAGAGAGTTGCACAGAAA+TGG | - | chr8.3:2065089-2065108 | MS.gene012457:intron | 45.0% | |
| GTCTGGACGAAATTGGTTGA+AGG | + | chr8.3:2064054-2064073 | None:intergenic | 45.0% | |
| GTTCATTGTCAACGGCAACA+TGG | + | chr8.3:2067027-2067046 | None:intergenic | 45.0% | |
| TAGCAGACAAGTCTCTTGGA+AGG | + | chr8.3:2066169-2066188 | None:intergenic | 45.0% | |
| TATGAACTAGGCAAGACCCT+GGG | - | chr8.3:2066902-2066921 | MS.gene012457:intron | 45.0% | |
| TTCTGCTAGTGGAGAAGACA+GGG | - | chr8.3:2064520-2064539 | MS.gene012457:intron | 45.0% | |
| ! | AACTGGCTTCGATCTAGGTT+TGG | - | chr8.3:2066593-2066612 | MS.gene012457:intron | 45.0% |
| ! | CACTTAAGGAGCGTGTTTCA+GGG | - | chr8.3:2064276-2064295 | MS.gene012457:intron | 45.0% |
| ! | CTAGGGGTGTGTGATGATAA+TGG | + | chr8.3:2066704-2066723 | None:intergenic | 45.0% |
| ! | CTTTTCCCACTAGACGAAGT+TGG | + | chr8.3:2065886-2065905 | None:intergenic | 45.0% |
| ! | GGCTGGAGTTTTCTATCACA+AGG | + | chr8.3:2066570-2066589 | None:intergenic | 45.0% |
| ! | GGTTATATTTGGCTCGCAGT+AGG | - | chr8.3:2066614-2066633 | MS.gene012457:CDS | 45.0% |
| ! | GTCAACGAGACTCGTTTTGT+AGG | + | chr8.3:2066124-2066143 | None:intergenic | 45.0% |
| ! | TATATTTGGCTCGCAGTAGG+GGG | - | chr8.3:2066617-2066636 | MS.gene012457:CDS | 45.0% |
| ACCTAGATCGAAGCCAGTTC+TGG | + | chr8.3:2066592-2066611 | None:intergenic | 50.0% | |
| ACTTGGACTCCGTAAGTGTC+TGG | + | chr8.3:2064071-2064090 | None:intergenic | 50.0% | |
| AGAAAACTCCAGCCCAGAAC+TGG | - | chr8.3:2066576-2066595 | MS.gene012457:intron | 50.0% | |
| ATGAGAGTGATGAGCCTGCA+TGG | - | chr8.3:2067083-2067102 | MS.gene012457:CDS | 50.0% | |
| CCTAGATCGAAGCCAGTTCT+GGG | + | chr8.3:2066591-2066610 | None:intergenic | 50.0% | |
| CCTGTCCGGATAAACGACAA+AGG | - | chr8.3:2064671-2064690 | MS.gene012457:intron | 50.0% | |
| GAAGGAACGAACACGAAGAG+AGG | + | chr8.3:2064036-2064055 | None:intergenic | 50.0% | |
| GACAAGTCTCTTGGAAGGCT+TGG | + | chr8.3:2066164-2066183 | None:intergenic | 50.0% | |
| GCGAAGACTTCTGCTATGGA+TGG | - | chr8.3:2067129-2067148 | MS.gene012457:CDS | 50.0% | |
| GGAGAAGACAGGGTTGTAGT+TGG | - | chr8.3:2064530-2064549 | MS.gene012457:intron | 50.0% | |
| ! | AGGACCCAAATTTGGTGAGC+AGG | + | chr8.3:2065959-2065978 | None:intergenic | 50.0% |
| ! | ATATTTGGCTCGCAGTAGGG+GGG | - | chr8.3:2066618-2066637 | MS.gene012457:CDS | 50.0% |
| ! | CCTTTGTCGTTTATCCGGAC+AGG | + | chr8.3:2064674-2064693 | None:intergenic | 50.0% |
| ! | GCACTTAAGGAGCGTGTTTC+AGG | - | chr8.3:2064275-2064294 | MS.gene012457:intron | 50.0% |
| AGAAACCTTGCCTGCCATGC+AGG | + | chr8.3:2067100-2067119 | None:intergenic | 55.0% | |
| GACCGCGAAGACTTCTGCTA+TGG | - | chr8.3:2067125-2067144 | MS.gene012457:CDS | 55.0% | |
| ! | CCCAGAACTGGCTTCGATCT+AGG | - | chr8.3:2066588-2066607 | MS.gene012457:intron | 55.0% |
| ! | GTCTCTTGGAAGGCTTGGTC+AGG | + | chr8.3:2066159-2066178 | None:intergenic | 55.0% |
| ! | TTGGAAGGCTTGGTCAGGAG+AGG | + | chr8.3:2066154-2066173 | None:intergenic | 55.0% |
| ATGAGCCTGCATGGCAGGCA+AGG | - | chr8.3:2067092-2067111 | MS.gene012457:CDS | 60.0% | |
| GAGTGATGAGCCTGCATGGC+AGG | - | chr8.3:2067087-2067106 | MS.gene012457:CDS | 60.0% | |
| !! | GATCGAAGCCAGTTCTGGGC+TGG | + | chr8.3:2066587-2066606 | None:intergenic | 60.0% |
| GGCTCGCAGTAGGGGGGATT+CGG | - | chr8.3:2066624-2066643 | MS.gene012457:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 2063828 | 2067168 | 2063828 | ID=MS.gene012457 |
| chr8.3 | mRNA | 2063828 | 2067168 | 2063828 | ID=MS.gene012457.t1;Parent=MS.gene012457 |
| chr8.3 | exon | 2066908 | 2067168 | 2066908 | ID=MS.gene012457.t1.exon1;Parent=MS.gene012457.t1 |
| chr8.3 | CDS | 2066908 | 2067168 | 2066908 | ID=cds.MS.gene012457.t1;Parent=MS.gene012457.t1 |
| chr8.3 | exon | 2066602 | 2066757 | 2066602 | ID=MS.gene012457.t1.exon2;Parent=MS.gene012457.t1 |
| chr8.3 | CDS | 2066602 | 2066757 | 2066602 | ID=cds.MS.gene012457.t1;Parent=MS.gene012457.t1 |
| chr8.3 | exon | 2066383 | 2066478 | 2066383 | ID=MS.gene012457.t1.exon3;Parent=MS.gene012457.t1 |
| chr8.3 | CDS | 2066383 | 2066478 | 2066383 | ID=cds.MS.gene012457.t1;Parent=MS.gene012457.t1 |
| chr8.3 | exon | 2065835 | 2065955 | 2065835 | ID=MS.gene012457.t1.exon4;Parent=MS.gene012457.t1 |
| chr8.3 | CDS | 2065835 | 2065955 | 2065835 | ID=cds.MS.gene012457.t1;Parent=MS.gene012457.t1 |
| chr8.3 | exon | 2063828 | 2063991 | 2063828 | ID=MS.gene012457.t1.exon5;Parent=MS.gene012457.t1 |
| chr8.3 | CDS | 2063828 | 2063991 | 2063828 | ID=cds.MS.gene012457.t1;Parent=MS.gene012457.t1 |
| Gene Sequence |
| Protein sequence |
