AlfalfaGEDB | MS.gene012560

M. sativa cultivar XinJiangDaYe / MS.gene012560

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012560.t1	RHN64893.1	93.8	518	31	1	1	518	1	517	2.30E-254	887.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012560.t1	P59583	48.0	496	204	14	28	518	20	466	6.0e-94	346.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012560.t1	A0A396IJP5	93.8	518	31	1	1	518	1	517	1.7e-254	887.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene012560.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012560.t1	MTR_4g130900	93.373	498	32	1	1	498	1	497	0.0	905
MS.gene012560.t1	MTR_3g056100	37.576	330	167	11	115	425	12	321	1.66e-51	182
MS.gene012560.t1	MTR_3g056100	43.388	242	117	7	186	425	242	465	1.02e-50	182
MS.gene012560.t1	MTR_7g011820	40.136	294	133	8	185	455	226	499	1.41e-50	181
MS.gene012560.t1	MTR_3g056100	36.842	342	166	12	115	425	12	334	9.26e-50	177
MS.gene012560.t1	MTR_5g094430	37.175	269	155	5	156	422	36	292	2.70e-49	175
MS.gene012560.t1	MTR_5g094430	53.731	67	30	1	359	425	65	130	6.76e-15	77.0
MS.gene012560.t1	MTR_3g056100	36.842	342	166	12	115	425	156	478	4.55e-49	178
MS.gene012560.t1	MTR_5g094430	37.175	269	155	5	156	422	58	314	5.54e-49	175
MS.gene012560.t1	MTR_5g094430	53.731	67	30	1	359	425	87	152	6.78e-15	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012560.t1	AT4G30935	48.692	497	199	16	28	518	20	466	5.73e-125	374
MS.gene012560.t1	AT2G03340	34.000	350	192	10	92	422	148	477	2.61e-50	180
MS.gene012560.t1	AT4G26640	36.525	282	148	5	155	422	3	267	7.73e-48	170
MS.gene012560.t1	AT4G26640	52.239	67	31	1	358	424	33	98	1.14e-14	76.3
MS.gene012560.t1	AT4G26640	36.525	282	148	5	155	422	3	267	7.73e-48	170
MS.gene012560.t1	AT4G26640	52.239	67	31	1	358	424	33	98	1.14e-14	76.3
MS.gene012560.t1	AT4G26640	36.525	282	148	5	155	422	3	267	7.73e-48	170
MS.gene012560.t1	AT4G26640	52.239	67	31	1	358	424	33	98	1.14e-14	76.3
MS.gene012560.t1	AT4G26640	36.525	282	148	5	155	422	3	267	7.73e-48	170
MS.gene012560.t1	AT4G26640	52.239	67	31	1	358	424	33	98	1.14e-14	76.3

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Find 130 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTGTTCTCTGCAGT+CGG	0.615994	8.4:-3036486	None:intergenic
AAAGACCTTTACCTGGGATG+TGG	0.496114	8.4:-3036944	None:intergenic
AAATTATCTAACCTTAATTT+CGG	0.308223	8.4:-3034920	None:intergenic
AAGACCTTTACCTGGGATGT+GGG	0.577183	8.4:-3036943	None:intergenic
AAGTTTGTTGTACATGCAGC+AGG	0.506685	8.4:+3036854	MS.gene012560:CDS
AATCCCTAATACGCTGAATT+CGG	0.433253	8.4:+3034888	MS.gene012560:CDS
AATCGTTAGTAATACGCCTG+TGG	0.690746	8.4:+3036164	MS.gene012560:CDS
AATGGAACTAATCTTCCGTG+GGG	0.732859	8.4:-3036433	None:intergenic
AATTTCTACTCAATGGTCAG+TGG	0.645416	8.4:+3039029	MS.gene012560:CDS
ACAACCGAATTCAGCGTATT+AGG	0.178386	8.4:-3034892	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCCGAAAAATCAGTT+TGG	-	chr8.4:3038605-3038624	None:intergenic	30.0%
AAGAAATACTGTCTTGTCTT+GGG	-	chr8.4:3035858-3035877	None:intergenic	30.0%
AAGCAGTTTGAAAAATGACA+AGG	+	chr8.4:3037177-3037196	MS.gene012560:intron	30.0%
AATTCAGCATTTAAGCTACT+GGG	-	chr8.4:3035664-3035683	None:intergenic	30.0%
ACTCAACTGCAAATTATTCA+TGG	-	chr8.4:3038983-3039002	None:intergenic	30.0%
ATGGTAGTATTATGTATCCA+TGG	+	chr8.4:3038532-3038551	MS.gene012560:intron	30.0%
CAAAACTCATCTGATATCAA+TGG	+	chr8.4:3036600-3036619	MS.gene012560:CDS	30.0%
CAAAATGTATCTATCCATCA+TGG	+	chr8.4:3038513-3038532	MS.gene012560:intron	30.0%
CAAAGATGGAAAAGCAATTA+GGG	-	chr8.4:3034746-3034765	None:intergenic	30.0%
CAATATTTACCAACTTACCT+AGG	-	chr8.4:3037967-3037986	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	3034574	3039158	3034574	ID=MS.gene012560
chr8.4	mRNA	3034574	3039158	3034574	ID=MS.gene012560.t1;Parent=MS.gene012560
chr8.4	exon	3034574	3034787	3034574	ID=MS.gene012560.t1.exon1;Parent=MS.gene012560.t1
chr8.4	CDS	3034574	3034787	3034574	ID=cds.MS.gene012560.t1;Parent=MS.gene012560.t1
chr8.4	exon	3034878	3034930	3034878	ID=MS.gene012560.t1.exon2;Parent=MS.gene012560.t1
chr8.4	CDS	3034878	3034930	3034878	ID=cds.MS.gene012560.t1;Parent=MS.gene012560.t1
chr8.4	exon	3035967	3036679	3035967	ID=MS.gene012560.t1.exon3;Parent=MS.gene012560.t1
chr8.4	CDS	3035967	3036679	3035967	ID=cds.MS.gene012560.t1;Parent=MS.gene012560.t1
chr8.4	exon	3036796	3036954	3036796	ID=MS.gene012560.t1.exon4;Parent=MS.gene012560.t1
chr8.4	CDS	3036796	3036954	3036796	ID=cds.MS.gene012560.t1;Parent=MS.gene012560.t1
chr8.4	exon	3038741	3039158	3038741	ID=MS.gene012560.t1.exon5;Parent=MS.gene012560.t1
chr8.4	CDS	3038741	3039158	3038741	ID=cds.MS.gene012560.t1;Parent=MS.gene012560.t1

Gene Sequence

>MS.gene012560

ATGGCTGAGCATCGCGTCTCCGAAGCTCTCCCTGTGGGACCCACTCAGCTTCTCCCAGAACAACAAAAAGCTCAAGAGATAAAAAAGGAACCAGTCGGCGAATCACCGTCAGCCACCGAGTCGCAGAAAAGTGAATTACCGAGTTCTAATGAAAATTCGAATTCAGAAACCCTAATTGCTTTTCCATCTTTGGTTTTGGATCAACGTAGTTTCGGTACGCCTCAATTTCCACTCTGTTTATCCTTTTTCAGCAACAAAAAAAAAATTAAGAAAAAAATTGTGAATTGTTTGGTTGATTTCACAGATGTGCAAGGAATCCCTAATACGCTGAATTCGGTTGTCAAATCCGAAATTAAGGTTAGATAATTTATTGTACCAAATTTTAACTTTATTACCGTGTTATTTTATTGAAACAGATTTTAGTTAAACGTGCGATCGTTCAATTTTTTGTGAATTTTTTATATAGAATTTTTAATTTTTAGTTTTTTTATTGCATACTTTGCTTGATCATTTGCAGTAGTTGCTGGTTTAGGGCATGGTTATAATTGGGGAATTCGACCTTGAAAAGTTTGTTTGATTAGGGTTTTTGAATGTAATACCCTTATGTGGAAACTGTGTAGCTTTCACTGAAAATTTTGAAACAAATTAATTACTCTCCTTTTTGTTCTGAATCTGAGAATAAGGCAGTAGTACTGTTAGTTTCTGCTTTATAGATTATGAATTTGGAATCTGGATTGAAAATGATTGTTAAATGCTTCTATTTTTGGTAGGGTTTAGGACTTAGTTATTATAGGAAAAGACTTACTGAGTCTCCTGTTTCGATTTTCGGTCTATTTAAGCCTTAGAAGCTTCAGCTTAATCATGAACTTAAATTTTGACTGATCCCATAAAAAGGAGGAATGAATTTACTTAAATTTTGAAAGAAAACGAGATGCAATGACCAGGCTCTCTGGCTACAAAGTGATCCAAAATCGCATAAAAGTTGAATCACTTGATGTGTTTAATGATAGACCATATCCAAAATTGAGACTTCAAGTTTTATGTAACTCATTTATGATCTTCGTGAAGATTCTTAGGATTCTTTTTTCCCAGTAGCTTAAATGCTGAATTCTGAATTTTAACACTGGCATATGATGTACAAATGAAATGTCTATCCGGTAGCGCATTTATTAGTACAAAATCTACAGGTTTCAATTGACAGAGATATACATTTCTTGAGTTTTCATCTAACAAATTAGGTTTTTATAGTAATATTTGATTGCTTTTCTTGAATGAACAATTCCCAAGACAAGACAGTATTTCTTCATTCAAATTAAGCATAAAAAAATTGTATGTTATGTACATCCCAAGGTATTTGATTTCTTTAGCACTAAATAGGCCATTTCATGCTCAGGAAACGGTTGGACCTCTTGAAAATGAAAAGGAAGTTGCTAAAAGAGAAGCTGTCCAGGAACCTTCAGCTCAGGCCGAAGAGCAGCTTCAAGTGACTGTGTCTTCAAATCCACCATCTGAACTATCACCAAATTCTGTTACAAAATCTTTATCATCCGTTCCTAGTCCAACCATACAAATACAGAATATGTCTCCTCCAATCGTTAGTAATACGCCTGTGGCAGAAGTAAACAAAAAAAGTACTTCTGGCGGTAGAGCCTTGTCTTCTGTTTCTGTTCCAAGGACACCATCATCTGATGGATTCAACTGGCGGAAATATGGGCAGAAGCAAGTTAAGAGTCCTACTACAGGTTCTCGAAGCTATTACAGGTGTACTCAATCAAACTGTTGTGCTAAGAAGATTGAATGCTGGGATCATTCAGGTCATGTGATAGAGACTGTTTATAAAAGTGAGCACAGTCATGATCCCCCACGGAAGATTAGTTCCATTAGGGAAAGTAAGTTTGCGCCCTCCAACGAACCGACTGCAGAGAACAGTGTTTTAGTGAAGCCTGTCAATGCTCCGAAAGATTCTGATCCATCCACATCTTCCAAAGCTCAAGAAGAAACACCTTGCAGTTCTGACAAGAAACCACAAAACTCATCTGATATCAATGGTAATGGTAAAATAGTTTTGAACGAGGAACATGTCGACGAGCCAGATCCAAAACGAAGGCAAGTCCGCGTATGAAATCATATTATTTATCAGCAAAGCTTAAACAATAAGCCCATTTATTTTAATTGTGGCAGGATATAATGATTTATGTTCTCTCATTTAATTTGATAACCAGAAAGGAGAAAGGTGACTTGGTTCACTCAGATTCTTCTGTAAAACCTGAAAAGAAACCCAAGTTTGTTGTACATGCAGCAGGAGATGTGGGGATATCTGGTGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGTAACCCACATCCCAGGTAAAGGTCTTTATCCACAAGCCAAGTATGCATAATTTCTGTTTCCTTTGGTTATTATTTATTTTGTTCTTGATATGAATCGAATTTGTTGCATTGATGAATCAGTATCTTTAGTTGAATATTATGAAAGTTGAGTTTAGGTGTAAACAGTGTTCAATTTTTTAAAATAAATAAAAAATATAAAGTCCAATAAAAAAGTTGCAAGCTGCATTTATTTATTGTAAGCAGTTTGAAAAATGACAAGGCCAAGATCTTATTCAAGCTGGTGCCTTTTTTGCTTTCTTTTCTACTTAAGTGACTTTTTAAAATATTGTTCATAAATTTATATGGATGGATATTCACTTACATTGAGAGTAATTTTTGTCACAATTAAATTAAATTTTATCAATTAAGTTGCTGAATATTGTCATATTATCTTAGGGATTATGCACACCAAATTCTAGATAAATTTGACTTGTGTAGTTATTTTATAGTTGACATTTATTTTTATTTCACAAATATATCATGCCTTAAGTTTAATTTATTTGATTAAGTATCAAATATCTTTTGAATTTTATGAAATTTGTAAACTAGATAAATGAAGCTTGCAACTTTTTATTTTTGAAGGCACTTGTATTTTGTGCATGTTTATATTTGGCTTATTTTATGCTTAGAATGTGTCTAAAATAGAGATGTTGCTAAGAGAGCTATTATCTATAAAGCTGTTATTTTTTTAAAGTTAAGCTAAAACAAATATGGACAGAGTGTTAAATTAATACATGAAAGGTTTAGACAAATTACTATAGCCTATAGGTCAGCTTATGAAACAAGAGGCTAAGATAAGTTGGTAAATATTATGTTTAACTTAGACCAATAAGTGGCGGAGCATGGATGATAGTATATAAATGTTAAGGAATATATAAATGTAAGTATATTGGACAAATAATGTGTAATTTGTATCGTGGTGTTAATTAATGAAAAGTTTTAGATAAATTACTATAGCCTATTGGTTAAATTGTGAAACAAGAGGCCTAGGTAAGTTGGTAAATATTGTGTTAAACTGAGACCAGTAGAGGGGGTCAATTTTTTATGGAATATACATGTAAATATGTCACACAAATAACGTGTAGCTTGTATCGTGGTATAGTGGTTTAATCCACTTGTTTCTTACTTTGAAATACGGGGTTCGAATCTTGGGCCTACCATTGGTATAGTGGTTTAATCCACATGTTTCTTACTTTGAATTCCGGGGTTCCAATCTTGGGCCTACCATGTTTCCTCAAGAAAATACACTGGAAAGGCAAAAATGCGCTTAAAAGGAATCGACTCCAAGTCCCCGTCCTCCTTGCAAAACTAGCTTAGCAACTAGACTACCGTAAACTTCTATGAATGTAACCATATGATGTGTTGATGTTAGACATTCGCACATGCTGAACATCGGACACATCCACATCCTTAATTCGAGGCGTCGGTGCTACATGGATAGAATAAAAAACTTGGGGGAGCCGTGACTTCCATCTGTACCTCAAAAGATCCGTTACTGACCACCGAAACATGTCTGTTTCCATCCCTTGTTCTACAAAATGTATCTATCCATCATGGTAGTATTATGTATCCATGGAAACAGAACTGTATCTTCAAGAAAATGTATCCGGACAAAATTATTTGCCAAACTGATTTTTCGGCTTTTTTTTCTTCCTGTTTATATGAATGATATTAAAGCTCACTTTTTTCCTTTTACGGATTGTTGGTTTTCTTTTTAAGTTTTCTTTAATTTTCCATTGAATTTTTTTCCTTTTCTTATCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTTCGAAAGCACATTGAGACTGCCGTAGACAACTCAGATGCTGTCATCATAACTTACAAGGGTGTACATGATCATGACACTCCTGTGCCGAAGAAACGACACGGCCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCCTCCATGAATAATTTGCTGTGCCCACCAAGTGCTCCTCTTGTGGCTGATGCAGCACCTGCCTCCATGAATAATTTGCAGTTGAGTAAACCGGACTCGCCACAAAATCAGAAAATTTCTACTCAATGGTCAGTGGACACCGAAGGAGAACTAACCGGGGAAGCCAAGGACCTTGGGGGTGAGAAAGCAATAGAGTCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATCAAGCCTTGCTGA

Protein sequence

>MS.gene012560.t1

MAEHRVSEALPVGPTQLLPEQQKAQEIKKEPVGESPSATESQKSELPSSNENSNSETLIAFPSLVLDQRSFDVQGIPNTLNSVVKSEIKETVGPLENEKEVAKREAVQEPSAQAEEQLQVTVSSNPPSELSPNSVTKSLSSVPSPTIQIQNMSPPIVSNTPVAEVNKKSTSGGRALSSVSVPRTPSSDGFNWRKYGQKQVKSPTTGSRSYYRCTQSNCCAKKIECWDHSGHVIETVYKSEHSHDPPRKISSIRESKFAPSNEPTAENSVLVKPVNAPKDSDPSTSSKAQEETPCSSDKKPQNSSDINGNGKIVLNEEHVDEPDPKRRKEKGDLVHSDSSVKPEKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDTPVPKKRHGPPSAPLVAAAAPASMNNLLCPPSAPLVADAAPASMNNLQLSKPDSPQNQKISTQWSVDTEGELTGEAKDLGGEKAIESARTLLSIGFEIKPC