AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012598

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012598.t1 MTR_4g131580 72.513 593 104 5 1 537 1 590 0.0 822
MS.gene012598.t1 MTR_4g131570 93.233 399 23 2 144 542 202 596 0.0 759
MS.gene012598.t1 MTR_4g131600 65.210 595 146 3 1 542 4 590 0.0 758
MS.gene012598.t1 MTR_2g450070 32.548 679 278 23 3 533 4 650 4.59e-76 253
MS.gene012598.t1 MTR_2g450070 32.548 679 278 23 3 533 4 650 1.01e-75 253
MS.gene012598.t1 MTR_3g102600 50.199 251 93 3 11 261 2 220 1.63e-73 233
MS.gene012598.t1 MTR_2g034960 40.678 354 144 5 6 295 18 369 4.82e-73 244
MS.gene012598.t1 MTR_3g102600 59.677 186 71 1 11 196 2 183 6.30e-69 220
MS.gene012598.t1 MTR_8g079940 49.593 246 68 2 17 206 25 270 7.21e-67 226
MS.gene012598.t1 MTR_1g032570 42.230 296 99 4 16 242 10 302 1.87e-65 224
MS.gene012598.t1 MTR_4g121020 39.062 384 145 12 15 320 29 401 5.74e-64 221
MS.gene012598.t1 MTR_4g121020 39.062 384 145 12 15 320 29 401 6.02e-64 221
MS.gene012598.t1 MTR_3g102590 58.201 189 72 2 17 198 8 196 1.28e-61 203
MS.gene012598.t1 MTR_3g102590 57.838 185 71 2 17 194 8 192 1.23e-58 193
MS.gene012598.t1 MTR_3g086100 46.371 248 75 2 16 205 12 259 3.57e-58 203
MS.gene012598.t1 MTR_3g102600 48.768 203 72 3 59 261 1 171 9.39e-57 188
MS.gene012598.t1 MTR_3g106220 64.964 137 47 1 14 149 5 141 1.26e-53 192
MS.gene012598.t1 MTR_3g106220 45.714 140 64 2 144 279 197 328 1.09e-24 108
MS.gene012598.t1 MTR_3g102600 60.870 138 50 1 59 196 1 134 2.52e-53 177
MS.gene012598.t1 MTR_1g013170 63.910 133 48 0 15 147 3 135 8.38e-53 187
MS.gene012598.t1 MTR_1g013170 43.448 145 73 2 144 279 190 334 9.60e-23 102
MS.gene012598.t1 MTR_1g013180 58.784 148 60 1 2 148 140 287 7.14e-50 182
MS.gene012598.t1 MTR_1g013180 42.105 133 71 4 144 270 341 473 1.04e-18 90.1
MS.gene012598.t1 MTR_7g117705 61.194 134 51 1 15 147 3 136 3.46e-48 174
MS.gene012598.t1 MTR_7g117705 62.069 58 22 0 144 201 190 247 5.29e-17 84.0
MS.gene012598.t1 MTR_1g032570 40.254 236 69 4 76 242 1 233 1.04e-41 158
MS.gene012598.t1 MTR_4g021790 35.874 223 111 3 17 208 10 231 3.25e-39 144
MS.gene012598.t1 MTR_4g021760 33.632 223 116 2 17 208 11 232 5.30e-39 145
MS.gene012598.t1 MTR_4g021855 34.529 223 114 2 17 208 10 231 1.79e-38 143
MS.gene012598.t1 MTR_4g021845 35.885 209 102 3 17 194 10 217 1.54e-35 132
MS.gene012598.t1 MTR_6g045327 31.602 231 125 3 1 201 1 228 2.37e-34 134
MS.gene012598.t1 MTR_0450s0040 34.247 219 105 4 21 201 8 225 4.94e-33 129
MS.gene012598.t1 MTR_3g086100 41.489 188 52 2 76 205 1 188 9.76e-33 131
MS.gene012598.t1 MTR_8g105600 31.535 241 113 3 13 202 5 244 4.25e-30 124
MS.gene012598.t1 MTR_5g055260 36.548 197 106 5 17 202 10 198 7.85e-29 115
MS.gene012598.t1 MTR_7g026400 31.884 207 99 2 47 211 17 223 1.07e-26 114
MS.gene012598.t1 MTR_4g121020 32.673 303 115 12 96 320 6 297 1.33e-26 114
MS.gene012598.t1 MTR_1g013160 69.565 69 21 0 79 147 1 69 1.35e-25 103
MS.gene012598.t1 MTR_8g093040 26.966 267 154 6 1 244 1 249 6.72e-22 96.3
MS.gene012598.t1 MTR_3g092780 34.921 126 79 2 21 143 56 181 2.64e-21 98.2
MS.gene012598.t1 MTR_3g092780 34.921 126 79 2 21 143 56 181 3.12e-21 98.2
MS.gene012598.t1 MTR_8g024260 37.600 125 75 2 23 144 38 162 7.97e-21 96.7
MS.gene012598.t1 MTR_7g118260 35.385 130 81 2 18 144 11 140 9.07e-21 96.3
MS.gene012598.t1 MTR_6g016850 33.813 139 89 2 13 149 5 142 1.06e-20 89.7
MS.gene012598.t1 MTR_3g092780 34.959 123 77 2 21 140 56 178 1.17e-20 96.3
MS.gene012598.t1 MTR_3g092780 34.959 123 77 2 21 140 56 178 1.18e-20 96.3
MS.gene012598.t1 MTR_7g118260 32.919 161 99 4 18 169 11 171 1.55e-20 95.5
MS.gene012598.t1 MTR_4g064730 55.844 77 34 0 126 202 112 188 3.26e-19 89.0
MS.gene012598.t1 MTR_4g061360 36.691 139 81 4 5 139 75 210 3.52e-19 92.0
MS.gene012598.t1 MTR_1g067110 36.885 122 74 2 21 139 85 206 1.14e-18 90.1
MS.gene012598.t1 MTR_1g067110 36.885 122 74 2 21 139 85 206 1.30e-18 90.1
MS.gene012598.t1 MTR_7g089010 62.712 59 22 0 144 202 90 148 7.55e-17 81.6
MS.gene012598.t1 MTR_3g037390 30.496 141 93 2 3 140 8 146 8.47e-17 84.0
MS.gene012598.t1 MTR_4g108880 31.707 123 81 1 21 140 33 155 1.16e-16 83.6
MS.gene012598.t1 MTR_4g023980 29.927 137 65 2 63 168 35 171 1.97e-16 77.8
MS.gene012598.t1 MTR_8g032710 29.412 136 91 2 20 150 20 155 1.02e-15 80.1
MS.gene012598.t1 MTR_4g098870 36.508 126 76 2 15 139 12 134 1.20e-14 77.0
MS.gene012598.t1 MTR_4g098870 67.347 49 16 0 150 198 315 363 4.59e-14 75.1
MS.gene012598.t1 MTR_5g014040 37.302 126 75 2 15 139 12 134 1.52e-14 76.6
MS.gene012598.t1 MTR_5g014040 55.172 58 21 1 150 202 316 373 1.00e-11 67.8
MS.gene012598.t1 MTR_5g014040 37.302 126 75 2 15 139 12 134 1.56e-14 76.6
MS.gene012598.t1 MTR_5g014040 60.377 53 21 0 150 202 316 368 1.16e-13 73.9
MS.gene012598.t1 MTR_4g098870 36.508 126 76 2 15 139 32 154 1.58e-14 76.6
MS.gene012598.t1 MTR_4g098870 67.347 49 16 0 150 198 335 383 4.85e-14 75.1
MS.gene012598.t1 MTR_4g098870 36.508 126 76 2 15 139 51 173 1.66e-14 76.6
MS.gene012598.t1 MTR_4g098870 67.347 49 16 0 150 198 354 402 5.57e-14 75.1
MS.gene012598.t1 MTR_4g098870 36.508 126 76 2 15 139 12 134 2.14e-14 76.3
MS.gene012598.t1 MTR_4g098870 67.347 49 16 0 150 198 315 363 5.88e-14 75.1
MS.gene012598.t1 MTR_4g098870 36.508 126 76 2 15 139 32 154 2.82e-14 75.9
MS.gene012598.t1 MTR_4g098870 67.347 49 16 0 150 198 335 383 6.37e-14 74.7
MS.gene012598.t1 MTR_1g093080 49.254 67 33 1 139 204 205 271 6.03e-13 70.9
MS.gene012598.t1 MTR_4g078810 56.250 48 21 0 150 197 163 210 3.17e-12 68.9
MS.gene012598.t1 MTR_7g490310 28.571 154 87 3 22 154 10 161 4.17e-12 66.6
MS.gene012598.t1 MTR_2g090675 56.250 48 21 0 150 197 166 213 6.17e-12 68.2
MS.gene012598.t1 MTR_5g014040 55.172 58 21 1 150 202 276 333 7.80e-12 68.2
MS.gene012598.t1 MTR_4g106590 28.472 144 87 5 15 142 17 160 8.34e-12 65.1
MS.gene012598.t1 MTR_1g049100 28.148 135 83 3 21 141 8 142 9.84e-12 64.7
MS.gene012598.t1 MTR_1874s0010 32.743 113 72 2 19 129 2 112 1.10e-11 65.5
MS.gene012598.t1 MTR_6g088950 31.481 108 69 1 47 154 34 136 2.11e-11 63.9
MS.gene012598.t1 MTR_4g086835 46.667 60 32 0 143 202 272 331 6.00e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012598.t1 AT4G31920 47.040 321 113 8 1 268 1 317 4.86e-78 256
MS.gene012598.t1 AT5G58080 43.288 365 139 7 9 314 6 361 3.01e-73 245
MS.gene012598.t1 AT1G67710 48.988 247 67 7 18 205 8 254 2.13e-56 197
MS.gene012598.t1 AT2G25180 65.493 142 45 1 1 142 1 138 2.16e-55 196
MS.gene012598.t1 AT2G25180 40.659 182 96 6 149 319 199 379 4.61e-23 103
MS.gene012598.t1 AT3G16857 61.905 126 48 0 15 140 31 156 7.29e-46 171
MS.gene012598.t1 AT3G16857 51.111 90 44 0 144 233 236 325 9.30e-20 93.6
MS.gene012598.t1 AT3G16857 61.905 126 48 0 15 140 31 156 9.88e-46 171
MS.gene012598.t1 AT3G16857 40.152 132 75 2 144 271 236 367 8.49e-20 93.6
MS.gene012598.t1 AT2G01760 56.589 129 55 1 13 140 3 131 2.98e-42 155
MS.gene012598.t1 AT2G01760 61.538 65 25 0 143 207 198 262 9.54e-18 85.9
MS.gene012598.t1 AT5G49240 35.270 241 99 2 11 194 32 272 4.76e-40 147
MS.gene012598.t1 AT2G01760 47.097 155 53 2 15 140 5 159 2.17e-36 140
MS.gene012598.t1 AT2G01760 61.538 65 25 0 143 207 226 290 1.06e-17 85.9
MS.gene012598.t1 AT1G49190 29.316 307 138 9 17 260 30 320 1.20e-32 129
MS.gene012598.t1 AT3G16857 68.235 85 27 0 56 140 2 86 3.52e-32 131
MS.gene012598.t1 AT3G16857 40.152 132 75 2 144 271 166 297 6.50e-20 94.0
MS.gene012598.t1 AT1G67710 44.444 189 46 7 76 205 1 189 3.88e-31 126
MS.gene012598.t1 AT3G62670 32.714 269 118 8 36 249 54 314 7.33e-31 125
MS.gene012598.t1 AT1G49190 38.400 125 77 0 17 141 30 154 9.46e-24 105
MS.gene012598.t1 AT2G46790 37.209 129 78 2 21 146 37 165 6.63e-22 99.0
MS.gene012598.t1 AT2G46790 37.209 129 78 2 21 146 37 165 8.36e-22 99.0
MS.gene012598.t1 AT5G24470 35.200 125 78 2 19 140 48 172 2.14e-21 98.2
MS.gene012598.t1 AT2G01760 65.152 66 22 1 76 140 1 66 1.91e-20 92.8
MS.gene012598.t1 AT2G01760 61.538 65 25 0 143 207 133 197 4.55e-18 85.9
MS.gene012598.t1 AT5G60100 37.795 127 75 3 17 139 59 185 2.43e-19 90.9
MS.gene012598.t1 AT5G60100 37.795 127 75 3 17 139 59 185 2.43e-19 90.9
MS.gene012598.t1 AT5G60100 37.795 127 75 3 17 139 59 185 2.43e-19 90.9
MS.gene012598.t1 AT5G60100 37.795 127 75 3 17 139 59 185 4.66e-19 90.9
MS.gene012598.t1 AT5G60100 37.795 127 75 3 17 139 59 185 4.66e-19 90.9
MS.gene012598.t1 AT5G60100 37.795 127 75 3 17 139 59 185 4.66e-19 90.9
MS.gene012598.t1 AT5G59570 66.667 60 20 0 143 202 139 198 5.36e-19 88.2
MS.gene012598.t1 AT5G59570 66.667 60 20 0 143 202 139 198 5.36e-19 88.2
MS.gene012598.t1 AT1G67710 39.286 168 43 7 97 205 13 180 6.03e-19 90.1
MS.gene012598.t1 AT5G60100 37.795 127 75 3 17 139 59 185 6.39e-19 90.5
MS.gene012598.t1 AT3G46640 66.102 59 20 0 144 202 143 201 1.52e-18 87.4
MS.gene012598.t1 AT3G46640 66.102 59 20 0 144 202 143 201 1.52e-18 87.4
MS.gene012598.t1 AT3G46640 66.102 59 20 0 144 202 143 201 1.80e-18 87.0
MS.gene012598.t1 AT5G02810 36.885 122 74 2 21 139 78 199 2.39e-17 85.9
MS.gene012598.t1 AT5G05090 62.712 59 22 0 144 202 80 138 2.95e-17 82.4
MS.gene012598.t1 AT2G40970 62.712 59 22 0 144 202 104 162 3.09e-17 82.0
MS.gene012598.t1 AT3G10760 62.712 59 22 0 144 202 104 162 4.96e-17 82.8
MS.gene012598.t1 AT5G61380 33.333 123 79 1 21 140 19 141 1.47e-16 83.2
MS.gene012598.t1 AT5G44190 57.627 59 25 0 144 202 146 204 5.32e-14 73.9
MS.gene012598.t1 AT5G44190 57.627 59 25 0 144 202 146 204 5.95e-14 74.3
MS.gene012598.t1 AT5G07210 31.200 125 83 2 21 144 16 138 1.18e-13 74.3
MS.gene012598.t1 AT5G07210 48.649 74 31 1 134 207 218 284 2.87e-13 72.8
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 1.62e-13 73.6
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.27e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 1.62e-13 73.6
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.27e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 1.62e-13 73.6
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.27e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 1.62e-13 73.6
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.27e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 1.62e-13 73.6
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.27e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 1.62e-13 73.6
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.27e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 2.26e-13 73.2
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.89e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 2.26e-13 73.2
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.89e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 2.26e-13 73.2
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.89e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 2.26e-13 73.2
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.89e-12 68.2
MS.gene012598.t1 AT4G18020 38.636 132 72 3 15 139 12 141 2.26e-13 73.2
MS.gene012598.t1 AT4G18020 53.125 64 23 1 138 201 296 352 7.89e-12 68.2
MS.gene012598.t1 AT5G07210 48.649 74 31 1 134 207 226 292 3.03e-13 72.8
MS.gene012598.t1 AT5G07210 29.323 133 83 3 21 144 16 146 2.70e-11 66.6
MS.gene012598.t1 AT2G20570 59.615 52 21 0 150 201 158 209 1.66e-12 70.1
MS.gene012598.t1 AT2G20570 59.615 52 21 0 150 201 174 225 1.97e-12 69.7
MS.gene012598.t1 AT2G03500 43.662 71 39 1 148 217 236 306 5.82e-12 68.2
MS.gene012598.t1 AT1G19050 27.389 157 99 4 1 142 1 157 1.10e-11 64.7
MS.gene012598.t1 AT2G27070 52.542 59 28 0 150 208 230 288 1.72e-11 67.4
MS.gene012598.t1 AT1G10470 30.000 130 79 3 21 138 20 149 5.65e-11 63.5
MS.gene012598.t1 AT1G10470 30.000 130 79 3 21 138 34 163 5.90e-11 63.5
MS.gene012598.t1 AT1G74890 26.154 130 84 2 21 138 18 147 6.95e-11 62.4

Find 107 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCGCTCAGTTCTCAATTT+AGG 0.173828 8.1:+2278841 MS.gene012598:CDS
AGCTTGAATCCATCCATTTC+TGG 0.203555 8.1:-2277130 None:intergenic
TTATAGTTTGTACCTGTAAA+TGG 0.224166 8.1:-2277924 None:intergenic
TGAAAACTCGAGTGCTTTAA+AGG 0.227005 8.1:+2278467 MS.gene012598:CDS
AAACAATGGCTGCTTGTAAC+TGG 0.250042 8.1:-2278436 None:intergenic
CGTCATTGATGTTCCTTTAG+AGG 0.255703 8.1:+2278893 MS.gene012598:CDS
TATTAGCTTGGGGTACATTA+TGG 0.266193 8.1:-2279055 None:intergenic
TCCTGTGGGAATGCATGTTC+TGG 0.298859 8.1:+2275966 MS.gene012598:CDS
CTTCTCATGTGCAAGTATAA+TGG 0.318350 8.1:+2276033 MS.gene012598:CDS
CAATGTCAAGATGGATTACT+TGG 0.334290 8.1:+2278924 MS.gene012598:CDS
GAGAAAGAAGATTGAAAGTA+AGG 0.340472 8.1:+2277424 MS.gene012598:CDS
TGAGGCATCTGAGTGATTAA+TGG 0.341513 8.1:-2279080 None:intergenic
CATTGCATTGTTTCCTCTAA+AGG 0.359272 8.1:-2278906 None:intergenic
AAGAATTCAGTAGCTGGATA+TGG 0.366836 8.1:+2278252 MS.gene012598:CDS
AGTGCATTTACAGATTCTTC+TGG 0.369412 8.1:+2278576 MS.gene012598:CDS
TTATTCAGATGAAAGAACTA+TGG 0.373116 8.1:+2279115 MS.gene012598:CDS
AGGACTGGAAGCAAAGTTAT+AGG 0.378746 8.1:-2278760 None:intergenic
GATGGCTTTGGAGAATCCTT+TGG 0.383986 8.1:+2275915 None:intergenic
TCTCAAAAGGCCATCTAAAC+AGG 0.387755 8.1:+2278194 MS.gene012598:CDS
GATAAATGTTCCGGTGAAAC+TGG 0.391840 8.1:-2278515 None:intergenic
TCAGTAATGATACCTTTATT+CGG 0.392934 8.1:-2277449 None:intergenic
AAATGTGGCTAGCCATTTAC+AGG 0.398143 8.1:+2277912 MS.gene012598:CDS
CTCTTGAATTATGTGTTTGT+AGG 0.401274 8.1:-2278665 None:intergenic
TCTACTCTAGCCTGTTTAGA+TGG 0.401513 8.1:-2278204 None:intergenic
ATTCTGGTTCATGATGGCTT+TGG 0.405441 8.1:+2275903 None:intergenic
GAAAGTAAGGATCCGAATAA+AGG 0.416092 8.1:+2277437 MS.gene012598:CDS
TTCAGAATAGTTGTTTGCCT+TGG 0.419816 8.1:+2279192 MS.gene012598:CDS
CTTAAGATTCTTCTTGATCC+AGG 0.420041 8.1:-2278291 None:intergenic
TGTCGGCTGAACGCACCATC+TGG 0.422911 8.1:+2278351 MS.gene012598:CDS
TGAGCAAGTTGGACATGAAA+TGG 0.425491 8.1:+2277156 MS.gene012598:CDS
GAGCAATTGCTTGATGTAGA+TGG 0.429100 8.1:+2279164 MS.gene012598:CDS
TTTATAAATCACCCATCTGT+TGG 0.434200 8.1:+2278690 MS.gene012598:CDS
AATGCACTTGAATCATCAAT+TGG 0.435178 8.1:-2278561 None:intergenic
GATTAATGGACTATTAGCTT+GGG 0.435758 8.1:-2279066 None:intergenic
TACCAGGTGGATAAATGTTC+CGG 0.439267 8.1:-2278524 None:intergenic
CATCTAGTAACATGTATTGT+CGG 0.449068 8.1:+2278334 MS.gene012598:CDS
TCTCTTGCTTCTTCTAATGC+AGG 0.449172 8.1:+2279017 MS.gene012598:CDS
TAACATTAGCTCTGATGTCT+TGG 0.449900 8.1:-2278602 None:intergenic
CACCGGAACATTTATCCACC+TGG 0.455890 8.1:+2278522 MS.gene012598:CDS
TTGGAGGTTGAAGATGTCTT+CGG 0.457510 8.1:+2275934 MS.gene012598:CDS
TTATAGGAACCACTTGTAGC+AGG 0.464041 8.1:-2278744 None:intergenic
AATACAAACTTAGTCTCAAA+AGG 0.473606 8.1:+2278181 MS.gene012598:CDS
TGGAAGAGCTTAAGAACATA+TGG 0.475204 8.1:+2277390 MS.gene012598:CDS
GGAGATTTGTGTACCTTACC+TGG 0.477382 8.1:+2278273 MS.gene012598:CDS
TGATTAATGGACTATTAGCT+TGG 0.477988 8.1:-2279067 None:intergenic
TGATGTAAACATGCCAGAAA+TGG 0.478571 8.1:+2277117 MS.gene012598:CDS
TTCTTCCTTCAACAATACCT+TGG 0.480791 8.1:+2278992 MS.gene012598:CDS
TTAAGCTCTTCCAATCGGAT+TGG 0.487989 8.1:-2277380 None:intergenic
TCAAACTTGTCTCAAACTGT+TGG 0.489304 8.1:+2276002 MS.gene012598:CDS
TGTTCTTAAGCTCTTCCAAT+CGG 0.493421 8.1:-2277385 None:intergenic
GGCTTTGGAGAATCCTTTGG+AGG 0.494937 8.1:+2275918 MS.gene012598:CDS
CTCACTCAATGGAGAAGGAC+TGG 0.495705 8.1:-2278775 None:intergenic
TGAATGTTGAAGGGCTTACA+AGG 0.497287 8.1:+2277887 MS.gene012598:CDS
GAAAGAACTATGGAATCAAA+TGG 0.497837 8.1:+2279125 MS.gene012598:CDS
CAGTCCTTCTCCATTGAGTG+AGG 0.499289 8.1:+2278776 MS.gene012598:CDS
CTACAAAAGAATTCAGTAGC+TGG 0.500934 8.1:+2278246 MS.gene012598:CDS
ATCTGTTGGAGGTCCTGCTA+TGG 0.503540 8.1:+2278704 MS.gene012598:CDS
GAAAACTCGAGTGCTTTAAA+GGG 0.504861 8.1:+2278468 MS.gene012598:CDS
AGAATCCAAGGTATTGTTGA+AGG 0.506294 8.1:-2278997 None:intergenic
TTATTAAAATCCTCACTCAA+TGG 0.507785 8.1:-2278786 None:intergenic
CAGGAAATGATGATAGAGAG+AGG 0.513398 8.1:+2277312 MS.gene012598:CDS
TGTGATCATATAGTGTTGTC+AGG 0.513792 8.1:+2277293 MS.gene012598:intron
AGAAGAAGCAAGAGAATCCA+AGG 0.514940 8.1:-2279009 None:intergenic
GGACTTAAGTTCATGTTACC+AGG 0.516544 8.1:-2278540 None:intergenic
TTCAAGCTCCTTGAGCAAGT+TGG 0.519096 8.1:+2277145 MS.gene012598:CDS
GATTCTTCTTGATCCAGGTA+AGG 0.519260 8.1:-2278286 None:intergenic
AACAATGGCTGCTTGTAACT+GGG 0.528436 8.1:-2278435 None:intergenic
GAATAAAATTTCTCAACTTG+AGG 0.529905 8.1:-2279098 None:intergenic
GTCACATAAACTCACTATCA+AGG 0.536123 8.1:-2277697 None:intergenic
TTCACTTATTGTATCATCCA+AGG 0.536142 8.1:-2279209 None:intergenic
GAAACAATGCAATGTCAAGA+TGG 0.544924 8.1:+2278915 MS.gene012598:CDS
TCTTGTGAAACCAATCCGAT+TGG 0.545613 8.1:+2277370 MS.gene012598:CDS
TGTGACTTGATGAATGTTGA+AGG 0.547972 8.1:+2277877 MS.gene012598:CDS
ATAAATCACCCATCTGTTGG+AGG 0.552382 8.1:+2278693 MS.gene012598:CDS
TAATGCAGGCACTAGTTCCA+TGG 0.559067 8.1:+2279031 MS.gene012598:CDS
GTGTGTGAACTTACTGATGA+AGG 0.560607 8.1:-2277185 None:intergenic
AGGAAATGATGATAGAGAGA+GGG 0.563967 8.1:+2277313 MS.gene012598:CDS
TTTCATGTCCAACTTGCTCA+AGG 0.564395 8.1:-2277153 None:intergenic
TGGAAATTAACCAGTTTCAC+CGG 0.564960 8.1:+2278505 MS.gene012598:CDS
ATGTTACTAGATGCATATGT+TGG 0.572114 8.1:-2278324 None:intergenic
AAATCCTCACTCAATGGAGA+AGG 0.576468 8.1:-2278780 None:intergenic
ATAGCAGGACCTCCAACAGA+TGG 0.581262 8.1:-2278702 None:intergenic
CCATCTGGATTGAACTTGAG+AGG 0.585944 8.1:+2278366 MS.gene012598:CDS
TATAGGAACCACTTGTAGCA+GGG 0.588786 8.1:-2278743 None:intergenic
AAAGGGTGTTCGAACGTCAG+TGG 0.592037 8.1:+2278485 MS.gene012598:CDS
ATTACTTGGGAATGTTGTAA+CGG 0.596089 8.1:+2278938 MS.gene012598:CDS
GATAGAGAGAGGGTGATGAA+AGG 0.596610 8.1:+2277323 MS.gene012598:CDS
CCTCTCAAGTTCAATCCAGA+TGG 0.601365 8.1:-2278366 None:intergenic
GTAAACATGCCAGAAATGGA+TGG 0.605525 8.1:+2277121 MS.gene012598:CDS
TAGCAGGACCTCCAACAGAT+GGG 0.607030 8.1:-2278701 None:intergenic
AAGACATCTTCAACCTCCAA+AGG 0.613959 8.1:-2275931 None:intergenic
CCTAAATTGAGAACTGAGCG+AGG 0.617995 8.1:-2278841 None:intergenic
GCCAGAACATGCATTCCCAC+AGG 0.618067 8.1:-2275967 None:intergenic
GTGATGAAAGGTGTGATGAA+AGG 0.623017 8.1:+2277335 MS.gene012598:CDS
AGGGCTTACAAGGGAAAATG+TGG 0.634196 8.1:+2277897 MS.gene012598:CDS
ATTAATGGACTATTAGCTTG+GGG 0.634710 8.1:-2279065 None:intergenic
GTATCTATAGTTAGTCAACT+CGG 0.636343 8.1:+2277674 MS.gene012598:CDS
GTGACTTGATGAATGTTGAA+GGG 0.645884 8.1:+2277878 MS.gene012598:CDS
TGTGTGAACTTACTGATGAA+GGG 0.654608 8.1:-2277184 None:intergenic
AATGTCAAGATGGATTACTT+GGG 0.659008 8.1:+2278925 MS.gene012598:CDS
CTTAAGTTCATGTTACCAGG+TGG 0.668465 8.1:-2278537 None:intergenic
TGAACTTACTGATGAAGGGT+AGG 0.673339 8.1:-2277180 None:intergenic
GAATGTTGAAGGGCTTACAA+GGG 0.675399 8.1:+2277888 MS.gene012598:CDS
TTACACGCAGCAGCAAAACG+TGG 0.681302 8.1:+2278968 MS.gene012598:CDS
TTGGGGTACATTATGGACCA+TGG 0.694419 8.1:-2279048 None:intergenic
TACACGCAGCAGCAAAACGT+GGG 0.705438 8.1:+2278969 MS.gene012598:CDS
AGAACTATGGAATCAAATGG+TGG 0.707711 8.1:+2279128 MS.gene012598:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGAAATATTTTGACAAAA+GGG - chr8.1:2277954-2277973 None:intergenic 15.0%
!!! TTATGTTTCTACTAATTTTT+TGG - chr8.1:2276489-2276508 None:intergenic 15.0%
!! AAAATGAGAAAACAGTATTT+AGG - chr8.1:2276757-2276776 None:intergenic 20.0%
!! AAAGTCGAAAATAAAAATAG+AGG + chr8.1:2276619-2276638 MS.gene012598:intron 20.0%
!! ATTCACTTCTTATATTCATA+TGG + chr8.1:2277244-2277263 MS.gene012598:intron 20.0%
!! TAGGTCAACATATATTATTA+GGG - chr8.1:2276447-2276466 None:intergenic 20.0%
!!! AAATATTTTCGATGTAATCT+TGG + chr8.1:2276364-2276383 MS.gene012598:intron 20.0%
!!! AAGATCACTACTATTTTATT+GGG + chr8.1:2276860-2276879 MS.gene012598:intron 20.0%
!!! AATAATTCAGTTGTTTTGAT+TGG + chr8.1:2276656-2276675 MS.gene012598:intron 20.0%
!!! ATGAAATATTTTGACAAAAG+GGG - chr8.1:2277953-2277972 None:intergenic 20.0%
!!! GAGAGACATTTAAAATAAAA+AGG - chr8.1:2276960-2276979 None:intergenic 20.0%
!!! GTATGAAATATTTTGACAAA+AGG - chr8.1:2277955-2277974 None:intergenic 20.0%
!!! TAAGATCACTACTATTTTAT+TGG + chr8.1:2276859-2276878 MS.gene012598:intron 20.0%
!!! TAGTAAACCCTTTTTTTAAT+CGG + chr8.1:2276182-2276201 MS.gene012598:intron 20.0%
!!! TGTTACTTTACTAATTTGAT+TGG + chr8.1:2277736-2277755 MS.gene012598:intron 20.0%
! AAAAATAAAGGAACAAAGTG+AGG + chr8.1:2277535-2277554 MS.gene012598:intron 25.0%
! AATACAAACTTAGTCTCAAA+AGG + chr8.1:2278181-2278200 MS.gene012598:CDS 25.0%
! ACCCGAAATAAACAAAAAAT+TGG - chr8.1:2276395-2276414 None:intergenic 25.0%
! CCCGAAATAAACAAAAAATT+GGG - chr8.1:2276394-2276413 None:intergenic 25.0%
! CCGAAATAAACAAAAAATTG+GGG - chr8.1:2276393-2276412 None:intergenic 25.0%
! CTGAAAGAAAGAAGAAAAAA+TGG - chr8.1:2276066-2276085 None:intergenic 25.0%
! GAATAAAATTTCTCAACTTG+AGG - chr8.1:2279101-2279120 None:intergenic 25.0%
! GTAGGTCAACATATATTATT+AGG - chr8.1:2276448-2276467 None:intergenic 25.0%
! GTTGAAATTTCAACGAATAA+TGG - chr8.1:2278096-2278115 None:intergenic 25.0%
! TAATACACATGCTAAAACAA+AGG - chr8.1:2277210-2277229 None:intergenic 25.0%
! TCAGTAATGATACCTTTATT+CGG - chr8.1:2277452-2277471 None:intergenic 25.0%
! TGATGATTGAAACTTACATA+TGG + chr8.1:2277790-2277809 MS.gene012598:intron 25.0%
! TGTAAGTTTCAATCATCAAA+TGG - chr8.1:2277788-2277807 None:intergenic 25.0%
! TTATTAAAATCCTCACTCAA+TGG - chr8.1:2278789-2278808 None:intergenic 25.0%
! TTATTCAGATGAAAGAACTA+TGG + chr8.1:2279115-2279134 MS.gene012598:CDS 25.0%
! TTTGGCAAATATACTTCTTT+GGG - chr8.1:2276471-2276490 None:intergenic 25.0%
!! ATCAAGTCACATATTTTCTT+AGG - chr8.1:2277868-2277887 None:intergenic 25.0%
!! CTCTTTTATGAAACATAAGT+GGG + chr8.1:2278119-2278138 MS.gene012598:intron 25.0%
!! TAACTTATAAGCTTTGTAGT+CGG + chr8.1:2276280-2276299 MS.gene012598:intron 25.0%
!! TCTCTTTTATGAAACATAAG+TGG + chr8.1:2278118-2278137 MS.gene012598:intron 25.0%
!! TTATAGTTTGTACCTGTAAA+TGG - chr8.1:2277927-2277946 None:intergenic 25.0%
!! TTTTCACTTGCAAAAAACAA+TGG - chr8.1:2278453-2278472 None:intergenic 25.0%
!! TTTTGGCAAATATACTTCTT+TGG - chr8.1:2276472-2276491 None:intergenic 25.0%
!!! AATAAAGGTATCATTACTGA+TGG + chr8.1:2277452-2277471 MS.gene012598:intron 25.0%
!!! AGTAAACCCTTTTTTTAATC+GGG + chr8.1:2276183-2276202 MS.gene012598:intron 25.0%
!!! ATAAAGGTATCATTACTGAT+GGG + chr8.1:2277453-2277472 MS.gene012598:intron 25.0%
!!! ATTTGATTGGCTTTAAAACA+TGG + chr8.1:2277749-2277768 MS.gene012598:intron 25.0%
!!! CCCAATTTTTTGTTTATTTC+GGG + chr8.1:2276391-2276410 MS.gene012598:intron 25.0%
!!! CCCCAATTTTTTGTTTATTT+CGG + chr8.1:2276390-2276409 MS.gene012598:intron 25.0%
!!! TCTATATTTGTTGTAAAGAC+CGG - chr8.1:2276566-2276585 None:intergenic 25.0%
AAATATCGTCGAAGTTAAAG+GGG + chr8.1:2278013-2278032 MS.gene012598:intron 30.0%
AACTTTGCTAGCAATGAAAA+TGG + chr8.1:2276589-2276608 MS.gene012598:intron 30.0%
AATGCACTTGAATCATCAAT+TGG - chr8.1:2278564-2278583 None:intergenic 30.0%
ATGTTACTAGATGCATATGT+TGG - chr8.1:2278327-2278346 None:intergenic 30.0%
ATTACTTGGGAATGTTGTAA+CGG + chr8.1:2278938-2278957 MS.gene012598:CDS 30.0%
ATTTGCCCCGATTAAAAAAA+GGG - chr8.1:2276192-2276211 None:intergenic 30.0%
CAAATATCGTCGAAGTTAAA+GGG + chr8.1:2278012-2278031 MS.gene012598:intron 30.0%
CAGTGGTGTAAACTTATAAT+TGG + chr8.1:2276145-2276164 MS.gene012598:intron 30.0%
CATATGCTTGTATGCAAATA+TGG + chr8.1:2278052-2278071 MS.gene012598:intron 30.0%
CATCTAGTAACATGTATTGT+CGG + chr8.1:2278334-2278353 MS.gene012598:CDS 30.0%
CTCTTGAATTATGTGTTTGT+AGG - chr8.1:2278668-2278687 None:intergenic 30.0%
GAAAGAACTATGGAATCAAA+TGG + chr8.1:2279125-2279144 MS.gene012598:CDS 30.0%
GAGAAAGAAGATTGAAAGTA+AGG + chr8.1:2277424-2277443 MS.gene012598:CDS 30.0%
GTATCTATAGTTAGTCAACT+CGG + chr8.1:2277674-2277693 MS.gene012598:CDS 30.0%
GTCAACATATATTATTAGGG+TGG - chr8.1:2276444-2276463 None:intergenic 30.0%
TTGGCAAATATACTTCTTTG+GGG - chr8.1:2276470-2276489 None:intergenic 30.0%
TTTATAAATCACCCATCTGT+TGG + chr8.1:2278690-2278709 MS.gene012598:CDS 30.0%
! AAAGATTTTTGTTCCATAGC+AGG - chr8.1:2278720-2278739 None:intergenic 30.0%
! AGTTGAAGAAAGTACATGTT+AGG - chr8.1:2277827-2277846 None:intergenic 30.0%
! GTTAGCAATATTTTCAGATG+AGG - chr8.1:2277495-2277514 None:intergenic 30.0%
!! AATGTCAAGATGGATTACTT+GGG + chr8.1:2278925-2278944 MS.gene012598:CDS 30.0%
!! ATCATCAAATGGTCTTGTTA+AGG - chr8.1:2277777-2277796 None:intergenic 30.0%
!! ATTAATGGACTATTAGCTTG+GGG - chr8.1:2279068-2279087 None:intergenic 30.0%
!! GATTAATGGACTATTAGCTT+GGG - chr8.1:2279069-2279088 None:intergenic 30.0%
!! TGATTAATGGACTATTAGCT+TGG - chr8.1:2279070-2279089 None:intergenic 30.0%
!!! GTAAACCCTTTTTTTAATCG+GGG + chr8.1:2276184-2276203 MS.gene012598:intron 30.0%
!!! GTTCCTTTATTTTTTGTCCA+CGG - chr8.1:2277529-2277548 None:intergenic 30.0%
!!! TTCCTTTATTTTTTGTCCAC+GGG - chr8.1:2277528-2277547 None:intergenic 30.0%
AACCCGTGGACAAAAAATAA+AGG + chr8.1:2277523-2277542 MS.gene012598:intron 35.0%
AAGAATTCAGTAGCTGGATA+TGG + chr8.1:2278252-2278271 MS.gene012598:CDS 35.0%
AAGTTATAACCAAAACGTCG+TGG - chr8.1:2276266-2276285 None:intergenic 35.0%
AGAACTATGGAATCAAATGG+TGG + chr8.1:2279128-2279147 MS.gene012598:CDS 35.0%
AGGAAATGATGATAGAGAGA+GGG + chr8.1:2277313-2277332 MS.gene012598:CDS 35.0%
AGTGCATTTACAGATTCTTC+TGG + chr8.1:2278576-2278595 MS.gene012598:CDS 35.0%
CATAAGATCACTTTGATGCT+TGG + chr8.1:2277009-2277028 MS.gene012598:intron 35.0%
CATTGCATTGTTTCCTCTAA+AGG - chr8.1:2278909-2278928 None:intergenic 35.0%
CATTTGCCCCGATTAAAAAA+AGG - chr8.1:2276193-2276212 None:intergenic 35.0%
CGACGATATTTGCAAAAATG+TGG - chr8.1:2278004-2278023 None:intergenic 35.0%
CTACAAAAGAATTCAGTAGC+TGG + chr8.1:2278246-2278265 MS.gene012598:CDS 35.0%
CTTAAGATTCTTCTTGATCC+AGG - chr8.1:2278294-2278313 None:intergenic 35.0%
CTTCTCATGTGCAAGTATAA+TGG + chr8.1:2276033-2276052 MS.gene012598:CDS 35.0%
GAAAACGCAGAAGAAGATAA+TGG + chr8.1:2277575-2277594 MS.gene012598:intron 35.0%
GAAACAATGCAATGTCAAGA+TGG + chr8.1:2278915-2278934 MS.gene012598:CDS 35.0%
GAAAGTAAGGATCCGAATAA+AGG + chr8.1:2277437-2277456 MS.gene012598:CDS 35.0%
GCAAATATCGTCGAAGTTAA+AGG + chr8.1:2278011-2278030 MS.gene012598:intron 35.0%
GTCACATAAACTCACTATCA+AGG - chr8.1:2277700-2277719 None:intergenic 35.0%
GTGACTTGATGAATGTTGAA+GGG + chr8.1:2277878-2277897 MS.gene012598:CDS 35.0%
GTGTCGAAGAAAAATCAGTT+GGG - chr8.1:2278872-2278891 None:intergenic 35.0%
TAATGGTAGAGAGAATGATG+AGG + chr8.1:2277592-2277611 MS.gene012598:intron 35.0%
TAGGAACAATAGACCTCATT+GGG + chr8.1:2276904-2276923 MS.gene012598:intron 35.0%
TCAAACTTGTCTCAAACTGT+TGG + chr8.1:2276002-2276021 MS.gene012598:CDS 35.0%
TGAAAACTCGAGTGCTTTAA+AGG + chr8.1:2278467-2278486 MS.gene012598:CDS 35.0%
TGATGTAAACATGCCAGAAA+TGG + chr8.1:2277117-2277136 MS.gene012598:CDS 35.0%
TGATTGAATGTGACATGTGT+CGG - chr8.1:2276332-2276351 None:intergenic 35.0%
TGCTAGCAATGAAAATGGTA+AGG + chr8.1:2276594-2276613 MS.gene012598:intron 35.0%
TGGAAATTAACCAGTTTCAC+CGG + chr8.1:2278505-2278524 MS.gene012598:CDS 35.0%
TGGAAGAGCTTAAGAACATA+TGG + chr8.1:2277390-2277409 MS.gene012598:CDS 35.0%
TGTGACTTGATGAATGTTGA+AGG + chr8.1:2277877-2277896 MS.gene012598:CDS 35.0%
TGTGATCATATAGTGTTGTC+AGG + chr8.1:2277293-2277312 MS.gene012598:intron 35.0%
TGTGTGAACTTACTGATGAA+GGG - chr8.1:2277187-2277206 None:intergenic 35.0%
TGTTCTTAAGCTCTTCCAAT+CGG - chr8.1:2277388-2277407 None:intergenic 35.0%
TTCAGAATAGTTGTTTGCCT+TGG + chr8.1:2279192-2279211 MS.gene012598:CDS 35.0%
TTCTTCAACTGTTATTGCAG+AGG + chr8.1:2277837-2277856 MS.gene012598:intron 35.0%
TTCTTCCTTCAACAATACCT+TGG + chr8.1:2278992-2279011 MS.gene012598:CDS 35.0%
! ACTGAATTCTTTTGTAGGTG+AGG - chr8.1:2278243-2278262 None:intergenic 35.0%
! CAGCTACTGAATTCTTTTGT+AGG - chr8.1:2278248-2278267 None:intergenic 35.0%
! GAAAACTCGAGTGCTTTAAA+GGG + chr8.1:2278468-2278487 MS.gene012598:CDS 35.0%
! TATTAGCTTGGGGTACATTA+TGG - chr8.1:2279058-2279077 None:intergenic 35.0%
!! AGAATCCAAGGTATTGTTGA+AGG - chr8.1:2279000-2279019 None:intergenic 35.0%
!! CAAATATACTTCTTTGGGGT+AGG - chr8.1:2276466-2276485 None:intergenic 35.0%
!! CAATGTCAAGATGGATTACT+TGG + chr8.1:2278924-2278943 MS.gene012598:CDS 35.0%
!! TAACATTAGCTCTGATGTCT+TGG - chr8.1:2278605-2278624 None:intergenic 35.0%
!!! TCGTCTTGTTTTGACATTTC+CGG + chr8.1:2276544-2276563 MS.gene012598:intron 35.0%
AAACAATGGCTGCTTGTAAC+TGG - chr8.1:2278439-2278458 None:intergenic 40.0%
AAAGGCTTCCTGCGTTATAA+AGG - chr8.1:2276942-2276961 None:intergenic 40.0%
AAATCCTCACTCAATGGAGA+AGG - chr8.1:2278783-2278802 None:intergenic 40.0%
AACAATGGCTGCTTGTAACT+GGG - chr8.1:2278438-2278457 None:intergenic 40.0%
AAGACATCTTCAACCTCCAA+AGG - chr8.1:2275934-2275953 None:intergenic 40.0%
AGAAGAAGCAAGAGAATCCA+AGG - chr8.1:2279012-2279031 None:intergenic 40.0%
AGCTTGAATCCATCCATTTC+TGG - chr8.1:2277133-2277152 None:intergenic 40.0%
AGGACTGGAAGCAAAGTTAT+AGG - chr8.1:2278763-2278782 None:intergenic 40.0%
ATAAATCACCCATCTGTTGG+AGG + chr8.1:2278693-2278712 MS.gene012598:CDS 40.0%
CAGGAAATGATGATAGAGAG+AGG + chr8.1:2277312-2277331 MS.gene012598:CDS 40.0%
CGTCATTGATGTTCCTTTAG+AGG + chr8.1:2278893-2278912 MS.gene012598:CDS 40.0%
CGTGTCGAAGAAAAATCAGT+TGG - chr8.1:2278873-2278892 None:intergenic 40.0%
CTTAAGTTCATGTTACCAGG+TGG - chr8.1:2278540-2278559 None:intergenic 40.0%
GAATGTTGAAGGGCTTACAA+GGG + chr8.1:2277888-2277907 MS.gene012598:CDS 40.0%
GAGCAATTGCTTGATGTAGA+TGG + chr8.1:2279164-2279183 MS.gene012598:CDS 40.0%
GATAAATGTTCCGGTGAAAC+TGG - chr8.1:2278518-2278537 None:intergenic 40.0%
GATTCTTCTTGATCCAGGTA+AGG - chr8.1:2278289-2278308 None:intergenic 40.0%
GCTAACAAGAATAAAACCCG+TGG + chr8.1:2277509-2277528 MS.gene012598:intron 40.0%
GGACTTAAGTTCATGTTACC+AGG - chr8.1:2278543-2278562 None:intergenic 40.0%
GTAAACATGCCAGAAATGGA+TGG + chr8.1:2277121-2277140 MS.gene012598:CDS 40.0%
GTAGGAACAATAGACCTCAT+TGG + chr8.1:2276903-2276922 MS.gene012598:intron 40.0%
GTGTGTGAACTTACTGATGA+AGG - chr8.1:2277188-2277207 None:intergenic 40.0%
TACCAGGTGGATAAATGTTC+CGG - chr8.1:2278527-2278546 None:intergenic 40.0%
TATAGGAACCACTTGTAGCA+GGG - chr8.1:2278746-2278765 None:intergenic 40.0%
TCATCATCCCAAACTAAACG+AGG - chr8.1:2277638-2277657 None:intergenic 40.0%
TCTACTCTAGCCTGTTTAGA+TGG - chr8.1:2278207-2278226 None:intergenic 40.0%
TCTCAAAAGGCCATCTAAAC+AGG + chr8.1:2278194-2278213 MS.gene012598:CDS 40.0%
TCTCTTGCTTCTTCTAATGC+AGG + chr8.1:2279017-2279036 MS.gene012598:CDS 40.0%
TCTTGTGAAACCAATCCGAT+TGG + chr8.1:2277370-2277389 MS.gene012598:CDS 40.0%
TGAACTTACTGATGAAGGGT+AGG - chr8.1:2277183-2277202 None:intergenic 40.0%
TGAATGTTGAAGGGCTTACA+AGG + chr8.1:2277887-2277906 MS.gene012598:CDS 40.0%
TGCATGAGAGGAGAATAGTA+CGG - chr8.1:2276127-2276146 None:intergenic 40.0%
TTAAGCTCTTCCAATCGGAT+TGG - chr8.1:2277383-2277402 None:intergenic 40.0%
TTATAGGAACCACTTGTAGC+AGG - chr8.1:2278747-2278766 None:intergenic 40.0%
TTGACTGTCCTTTATAACGC+AGG + chr8.1:2276931-2276950 MS.gene012598:intron 40.0%
TTGGAGGTTGAAGATGTCTT+CGG + chr8.1:2275934-2275953 MS.gene012598:CDS 40.0%
! AAAGACACTGCTAGTCTGTT+TGG + chr8.1:2276680-2276699 MS.gene012598:intron 40.0%
! AAATGTGGCTAGCCATTTAC+AGG + chr8.1:2277912-2277931 MS.gene012598:CDS 40.0%
! GAAGAAGCCTCGTTTAGTTT+GGG + chr8.1:2277628-2277647 MS.gene012598:intron 40.0%
! GACACATTAGTGTTGGAAGT+AGG + chr8.1:2276885-2276904 MS.gene012598:intron 40.0%
! GTGATGAAAGGTGTGATGAA+AGG + chr8.1:2277335-2277354 MS.gene012598:CDS 40.0%
! TCTTTTAACCCTGCTACAAG+TGG + chr8.1:2278735-2278754 MS.gene012598:CDS 40.0%
! TGAGCAAGTTGGACATGAAA+TGG + chr8.1:2277156-2277175 MS.gene012598:CDS 40.0%
! TGAGGCATCTGAGTGATTAA+TGG - chr8.1:2279083-2279102 None:intergenic 40.0%
! TTCGGAGAAGATTTTCCTGT+GGG + chr8.1:2275952-2275971 MS.gene012598:CDS 40.0%
! TTTCATGTCCAACTTGCTCA+AGG - chr8.1:2277156-2277175 None:intergenic 40.0%
!!! ATGTTTTGAGACTGAAGTGG+AGG - chr8.1:2278414-2278433 None:intergenic 40.0%
!!! GGAATGTTTTGAGACTGAAG+TGG - chr8.1:2278417-2278436 None:intergenic 40.0%
!!! TGTTTTGAGACTGAAGTGGA+GGG - chr8.1:2278413-2278432 None:intergenic 40.0%
ACTATTCTCCTCTCATGCAG+TGG + chr8.1:2276128-2276147 MS.gene012598:intron 45.0%
AGGGCTTACAAGGGAAAATG+TGG + chr8.1:2277897-2277916 MS.gene012598:CDS 45.0%
AGTTTACACCACTGCATGAG+AGG - chr8.1:2276139-2276158 None:intergenic 45.0%
CCATCTGGATTGAACTTGAG+AGG + chr8.1:2278366-2278385 MS.gene012598:CDS 45.0%
CCTAAATTGAGAACTGAGCG+AGG - chr8.1:2278844-2278863 None:intergenic 45.0%
CCTCGCTCAGTTCTCAATTT+AGG + chr8.1:2278841-2278860 MS.gene012598:CDS 45.0%
CCTCTCAAGTTCAATCCAGA+TGG - chr8.1:2278369-2278388 None:intergenic 45.0%
GACAGTCAATTCACCCAATG+AGG - chr8.1:2276920-2276939 None:intergenic 45.0%
GATAGAGAGAGGGTGATGAA+AGG + chr8.1:2277323-2277342 MS.gene012598:CDS 45.0%
GCATGAGAGGAGAATAGTAC+GGG - chr8.1:2276126-2276145 None:intergenic 45.0%
GGAAGAAGCCTCGTTTAGTT+TGG + chr8.1:2277627-2277646 MS.gene012598:intron 45.0%
GGAGATTTGTGTACCTTACC+TGG + chr8.1:2278273-2278292 MS.gene012598:CDS 45.0%
TAATGCAGGCACTAGTTCCA+TGG + chr8.1:2279031-2279050 MS.gene012598:CDS 45.0%
TTCAAGCTCCTTGAGCAAGT+TGG + chr8.1:2277145-2277164 MS.gene012598:CDS 45.0%
TTGGGCTGACACATTAGTGT+TGG + chr8.1:2276878-2276897 MS.gene012598:intron 45.0%
TTGGGGTACATTATGGACCA+TGG - chr8.1:2279051-2279070 None:intergenic 45.0%
! AATGTGACATGTGTCGGTGT+TGG - chr8.1:2276326-2276345 None:intergenic 45.0%
! CTTCGGAGAAGATTTTCCTG+TGG + chr8.1:2275951-2275970 MS.gene012598:CDS 45.0%
! GAGTTTGAACCACGACGTTT+TGG + chr8.1:2276254-2276273 MS.gene012598:intron 45.0%
ATAGCAGGACCTCCAACAGA+TGG - chr8.1:2278705-2278724 None:intergenic 50.0%
ATCTGTTGGAGGTCCTGCTA+TGG + chr8.1:2278704-2278723 MS.gene012598:CDS 50.0%
ATGATGAGGAACGCTCGACT+CGG + chr8.1:2277606-2277625 MS.gene012598:intron 50.0%
CACCGGAACATTTATCCACC+TGG + chr8.1:2278522-2278541 MS.gene012598:CDS 50.0%
CAGTCCTTCTCCATTGAGTG+AGG + chr8.1:2278776-2278795 MS.gene012598:CDS 50.0%
CTCACTCAATGGAGAAGGAC+TGG - chr8.1:2278778-2278797 None:intergenic 50.0%
TACACGCAGCAGCAAAACGT+GGG + chr8.1:2278969-2278988 MS.gene012598:CDS 50.0%
TAGCAGGACCTCCAACAGAT+GGG - chr8.1:2278704-2278723 None:intergenic 50.0%
TCCTGTGGGAATGCATGTTC+TGG + chr8.1:2275966-2275985 MS.gene012598:CDS 50.0%
TTACACGCAGCAGCAAAACG+TGG + chr8.1:2278968-2278987 MS.gene012598:CDS 50.0%
!! AAAGGGTGTTCGAACGTCAG+TGG + chr8.1:2278485-2278504 MS.gene012598:CDS 50.0%
!! GGCTTTGGAGAATCCTTTGG+AGG + chr8.1:2275918-2275937 MS.gene012598:CDS 50.0%
GCCAGAACATGCATTCCCAC+AGG - chr8.1:2275970-2275989 None:intergenic 55.0%
! TGTCGGCTGAACGCACCATC+TGG + chr8.1:2278351-2278370 MS.gene012598:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 2275916 2279226 2275916 ID=MS.gene012598
chr8.1 mRNA 2275916 2279226 2275916 ID=MS.gene012598.t1;Parent=MS.gene012598
chr8.1 exon 2275916 2276054 2275916 ID=MS.gene012598.t1.exon1;Parent=MS.gene012598.t1
chr8.1 CDS 2275916 2276054 2275916 ID=cds.MS.gene012598.t1;Parent=MS.gene012598.t1
chr8.1 exon 2277041 2277193 2277041 ID=MS.gene012598.t1.exon2;Parent=MS.gene012598.t1
chr8.1 CDS 2277041 2277193 2277041 ID=cds.MS.gene012598.t1;Parent=MS.gene012598.t1
chr8.1 exon 2277306 2277458 2277306 ID=MS.gene012598.t1.exon3;Parent=MS.gene012598.t1
chr8.1 CDS 2277306 2277458 2277306 ID=cds.MS.gene012598.t1;Parent=MS.gene012598.t1
chr8.1 exon 2277645 2277704 2277645 ID=MS.gene012598.t1.exon4;Parent=MS.gene012598.t1
chr8.1 CDS 2277645 2277704 2277645 ID=cds.MS.gene012598.t1;Parent=MS.gene012598.t1
chr8.1 exon 2277857 2277933 2277857 ID=MS.gene012598.t1.exon5;Parent=MS.gene012598.t1
chr8.1 CDS 2277857 2277933 2277857 ID=cds.MS.gene012598.t1;Parent=MS.gene012598.t1
chr8.1 exon 2278180 2279226 2278180 ID=MS.gene012598.t1.exon6;Parent=MS.gene012598.t1
chr8.1 CDS 2278180 2279226 2278180 ID=cds.MS.gene012598.t1;Parent=MS.gene012598.t1
Gene Sequence

>MS.gene012598

ATGGCTTTGGAGAATCCTTTGGAGGTTGAAGATGTCTTCGGAGAAGATTTTCCTGTGGGAATGCATGTTCTGGCTGTTGACGACGATCAAACTTGTCTCAAACTGTTGGAAAAGTTTCTTCTCATGTGCAAGTATAATGGTTCGTTTCCATTTTTTCTTCTTTCTTTCAGTCAATTCATTTCTGCATTGATGATTCTTTGATGTTTTCCCGTACTATTCTCCTCTCATGCAGTGGTGTAAACTTATAATTGGAACTTTCATTGATATAGTAAACCCTTTTTTTAATCGGGGCAAATGTTACTTGTTAGTAATTTAGTGATGATTATATTAGATTTTCAGAGTTTGAACCACGACGTTTTGGTTATAACTTATAAGCTTTGTAGTCGGTGCTGAGTGTGTGTTAGTATCCAACACCGACACATGTCACATTCAATCACTTGTTTTCTTAAAATATTTTCGATGTAATCTTGGCTACCCCAATTTTTTGTTTATTTCGGGTATAAATAAGTATACTTTTATGTTCAGCCACCCTAATAATATATGTTGACCTACCCCAAAGAAGTATATTTGCCAAAAAATTAGTAGAAACATAAAAGTTAAAGTATTATTATTTAATTGATAATATTATTCGTCTTGTTTTGACATTTCCGGTCTTTACAACAAATATAGAGAGAACTTTGCTAGCAATGAAAATGGTAAGGTAAAAGTCGAAAATAAAAATAGAGGATGAGTTTCTTGCAAATAATTCAGTTGTTTTGATTGGAAAAGACACTGCTAGTCTGTTTGGTACAAATTATGAATGAATATGATTTTTTGAAGTGTTGCTGAATTCAACTTTCCTAAATACTGTTTTCTCATTTTCTATTATTCTGTGCTGCTCTAATTTACATTTAAAATAAGTAAAAATTATTGCAAATTCTTGTAATGTAATTGTATATGTACATAAGATCACTACTATTTTATTGGGCTGACACATTAGTGTTGGAAGTAGGAACAATAGACCTCATTGGGTGAATTGACTGTCCTTTATAACGCAGGAAGCCTTTTTATTTTAAATGTCTCTCACTGAAGTTACTACAACTACATTAGTGTACATAAGATCACTTTGATGCTTGGTTGTTGCAGTTACTACAACTACGAAGTCAGTTGAAGCGCTAGAATTGTTGAGAGAAAAGAGAGATATGTTTGACATTGTAATTAGTGATGTAAACATGCCAGAAATGGATGGATTCAAGCTCCTTGAGCAAGTTGGACATGAAATGGACCTACCCTTCATCAGTAAGTTCACACACCTTTGTTTTAGCATGTGTATTATTCAGCTAACTAAGATTCACTTCTTATATTCATATGGTATCTTTAAGTGATGATTTCTTTTTGTGTGATCATATAGTGTTGTCAGGAAATGATGATAGAGAGAGGGTGATGAAAGGTGTGATGAAAGGCGCTTGCGACTATCTTGTGAAACCAATCCGATTGGAAGAGCTTAAGAACATATGGCAACATGTAGTGAGAAAGAAGATTGAAAGTAAGGATCCGAATAAAGGTATCATTACTGATGGGATATGTAATCAAGACACCTCATCTGAAAATATTGCTAACAAGAATAAAACCCGTGGACAAAAAATAAAGGAACAAAGTGAGGATGAAGAAGATGAAGAAGAAAACGCAGAAGAAGATAATGGTAGAGAGAATGATGAGGAACGCTCGACTCGGAAGAAGCCTCGTTTAGTTTGGGATGATGAATTGCATAAAAAATTTGTATCTATAGTTAGTCAACTCGGCCTTGATAGTGAGTTTATGTGACAATCATTTTTTTTTTTTGTTACTTTACTAATTTGATTGGCTTTAAAACATGGAACCTTAACAAGACCATTTGATGATTGAAACTTACATATGGATATTATTGTTCCTAACATGTACTTTCTTCAACTGTTATTGCAGAGGCTTATCCTAAGAAAATATGTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCTAGCCATTTACAGGTACAAACTATAATTTCCCCTTTTGTCAAAATATTTCATACTAGTTTATCATTAAAATATTTGATCACCACATTTTTGCAAATATCGTCGAAGTTAAAGGGGATAATTTACTTTTAAACATATGCTTGTATGCAAATATGGTGTGAAAGTTTTTTATATCCATTATTCGTTGAAATTTCAACAGTCTCTTTTATGAAACATAAGTGGGAAAACTGCATGTAAGCTCGTTCTTGTTTTTTATTGCAGAAATACAAACTTAGTCTCAAAAGGCCATCTAAACAGGCTAGAGTAGATGCTGCATTAGATCCTCACCTACAAAAGAATTCAGTAGCTGGATATGGAGATTTGTGTACCTTACCTGGATCAAGAAGAATCTTAAGCAGCACATTGCCAACATATGCATCTAGTAACATGTATTGTCGGCTGAACGCACCATCTGGATTGAACTTGAGAGGAATGAGTTCTTCTGCATTAGTCCCTCCACTTCAGTCTCAAAACATTCCCAGTTACAAGCAGCCATTGTTTTTTGCAAGTGAAAACTCGAGTGCTTTAAAGGGTGTTCGAACGTCAGTGGAAATTAACCAGTTTCACCGGAACATTTATCCACCTGGTAACATGAACTTAAGTCCAATTGATGATTCAAGTGCATTTACAGATTCTTCTGGCTTCCAAGACATCAGAGCTAATGTTAATAATGCAAATAGTTTTCTTTCTTGCATCTCAAGCAATCACCTACAAACACATAATTCAAGAGCATTTATAAATCACCCATCTGTTGGAGGTCCTGCTATGGAACAAAAATCTTTTAACCCTGCTACAAGTGGTTCCTATAACTTTGCTTCCAGTCCTTCTCCATTGAGTGAGGATTTTAATAATGATCAAATATCTCACAATAGCTTAAAGTTTGCCTCGCTCAGTTCTCAATTTAGGAAAAGCCCAACTGATTTTTCTTCGACACGCGTCATTGATGTTCCTTTAGAGGAAACAATGCAATGTCAAGATGGATTACTTGGGAATGTTGTAACGGCTTCATGTTACACGCAGCAGCAAAACGTGGGTTCTTCCTTCAACAATACCTTGGATTCTCTTGCTTCTTCTAATGCAGGCACTAGTTCCATGGTCCATAATGTACCCCAAGCTAATAGTCCATTAATCACTCAGATGCCTCAAGTTGAGAAATTTTATTCAGATGAAAGAACTATGGAATCAAATGGTGGTGATTGCTTTTTTGAGCAATTGCTTGATGTAGATGGATTCGTTCAGAATAGTTGTTTGCCTTGGATGATACAATAA
Protein sequence

>MS.gene012598.t1

MALENPLEVEDVFGEDFPVGMHVLAVDDDQTCLKLLEKFLLMCKYNVTTTTKSVEALELLREKRDMFDIVISDVNMPEMDGFKLLEQVGHEMDLPFIMLSGNDDRERVMKGVMKGACDYLVKPIRLEELKNIWQHVVRKKIESKDPNKVWDDELHKKFVSIVSQLGLDKAYPKKICDLMNVEGLTRENVASHLQKYKLSLKRPSKQARVDAALDPHLQKNSVAGYGDLCTLPGSRRILSSTLPTYASSNMYCRLNAPSGLNLRGMSSSALVPPLQSQNIPSYKQPLFFASENSSALKGVRTSVEINQFHRNIYPPGNMNLSPIDDSSAFTDSSGFQDIRANVNNANSFLSCISSNHLQTHNSRAFINHPSVGGPAMEQKSFNPATSGSYNFASSPSPLSEDFNNDQISHNSLKFASLSSQFRKSPTDFSSTRVIDVPLEETMQCQDGLLGNVVTASCYTQQQNVGSSFNNTLDSLASSNAGTSSMVHNVPQANSPLITQMPQVEKFYSDERTMESNGGDCFFEQLLDVDGFVQNSCLPWMIQ