AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012600.t1 MTR_4g131600 90.476 588 45 1 1 577 3 590 0.0 1060
MS.gene012600.t1 MTR_4g131570 70.451 599 151 4 2 577 1 596 0.0 820
MS.gene012600.t1 MTR_4g131580 69.661 590 160 4 2 572 1 590 0.0 798
MS.gene012600.t1 MTR_2g450070 40.393 661 290 19 1 568 1 650 1.14e-122 376
MS.gene012600.t1 MTR_2g450070 40.393 661 290 19 1 568 1 650 1.89e-122 377
MS.gene012600.t1 MTR_3g106220 52.147 326 140 6 15 324 5 330 8.86e-93 298
MS.gene012600.t1 MTR_1g013170 48.378 339 144 6 14 324 1 336 6.42e-92 291
MS.gene012600.t1 MTR_1g032570 55.200 250 102 5 18 258 11 259 4.22e-84 275
MS.gene012600.t1 MTR_4g121020 44.959 367 166 10 15 351 25 385 5.91e-81 268
MS.gene012600.t1 MTR_4g121020 44.959 367 166 10 15 351 25 385 5.97e-81 268
MS.gene012600.t1 MTR_3g086100 54.582 251 101 5 18 259 13 259 9.59e-81 264
MS.gene012600.t1 MTR_1g013180 48.000 325 141 6 14 313 152 473 1.59e-80 266
MS.gene012600.t1 MTR_8g079940 49.254 268 120 5 16 278 23 279 5.80e-78 256
MS.gene012600.t1 MTR_7g117705 46.254 307 158 4 14 313 1 307 3.13e-77 252
MS.gene012600.t1 MTR_2g034960 52.823 248 116 1 12 258 23 270 1.33e-76 254
MS.gene012600.t1 MTR_3g102590 50.000 236 70 3 18 252 8 196 2.87e-60 200
MS.gene012600.t1 MTR_1g032570 54.974 191 76 5 77 258 1 190 3.56e-58 204
MS.gene012600.t1 MTR_3g102590 50.000 232 68 3 18 248 8 192 1.15e-57 192
MS.gene012600.t1 MTR_3g086100 51.042 192 81 5 77 259 1 188 4.91e-51 183
MS.gene012600.t1 MTR_4g021760 37.872 235 123 4 17 251 10 221 2.04e-49 174
MS.gene012600.t1 MTR_4g021790 37.500 256 131 4 18 273 10 236 9.15e-48 168
MS.gene012600.t1 MTR_3g102600 60.769 130 51 0 12 141 2 131 1.03e-46 162
MS.gene012600.t1 MTR_3g102600 60.769 130 51 0 12 141 2 131 1.54e-46 163
MS.gene012600.t1 MTR_4g021855 38.235 238 124 3 18 255 10 224 1.13e-45 163
MS.gene012600.t1 MTR_4g021845 38.627 233 118 5 17 248 9 217 8.90e-45 158
MS.gene012600.t1 MTR_6g045327 35.000 260 136 6 12 262 8 243 6.50e-42 155
MS.gene012600.t1 MTR_0450s0040 36.364 242 136 6 22 263 8 231 2.09e-39 147
MS.gene012600.t1 MTR_4g121020 37.943 282 142 9 97 351 6 281 2.71e-39 152
MS.gene012600.t1 MTR_1g013160 48.344 151 73 2 80 225 1 151 3.31e-36 133
MS.gene012600.t1 MTR_8g105600 35.417 240 150 3 14 252 5 240 5.97e-34 136
MS.gene012600.t1 MTR_5g055260 34.043 235 103 8 18 251 10 193 2.45e-31 122
MS.gene012600.t1 MTR_3g102600 63.415 82 30 0 60 141 1 82 1.04e-30 117
MS.gene012600.t1 MTR_3g102600 60.377 53 21 0 198 250 82 134 2.78e-15 73.6
MS.gene012600.t1 MTR_3g102600 63.415 82 30 0 60 141 1 82 1.16e-30 118
MS.gene012600.t1 MTR_7g026400 35.096 208 124 3 48 255 17 213 2.26e-30 126
MS.gene012600.t1 MTR_8g032710 30.502 259 153 7 17 251 16 271 3.25e-28 118
MS.gene012600.t1 MTR_3g092780 32.979 188 105 5 22 195 56 236 4.37e-24 107
MS.gene012600.t1 MTR_3g092780 32.979 188 105 5 22 195 56 236 4.69e-24 107
MS.gene012600.t1 MTR_8g093040 28.926 242 134 3 14 255 10 213 1.62e-23 100
MS.gene012600.t1 MTR_3g092780 32.240 183 112 4 22 195 56 235 2.86e-23 104
MS.gene012600.t1 MTR_3g092780 32.240 183 112 4 22 195 56 235 2.97e-23 104
MS.gene012600.t1 MTR_4g023980 31.875 160 85 3 64 222 35 171 1.72e-22 95.1
MS.gene012600.t1 MTR_6g016850 33.121 157 102 2 14 168 5 160 1.01e-21 92.8
MS.gene012600.t1 MTR_7g118260 36.090 133 76 2 19 145 11 140 1.26e-21 99.4
MS.gene012600.t1 MTR_7g118260 36.719 128 72 2 19 140 11 135 2.61e-21 98.2
MS.gene012600.t1 MTR_4g061360 37.705 122 73 1 22 140 89 210 1.39e-19 93.6
MS.gene012600.t1 MTR_4g064730 52.381 84 37 2 175 255 104 187 1.48e-18 87.0
MS.gene012600.t1 MTR_1g067110 34.426 122 77 1 22 140 85 206 2.22e-18 89.4
MS.gene012600.t1 MTR_3g037390 31.579 133 86 2 14 141 14 146 2.45e-18 89.0
MS.gene012600.t1 MTR_1g067110 34.426 122 77 1 22 140 85 206 2.52e-18 89.4
MS.gene012600.t1 MTR_8g024260 33.600 125 80 1 24 145 38 162 1.36e-17 86.7
MS.gene012600.t1 MTR_4g108880 30.303 132 87 2 15 141 24 155 3.66e-17 85.5
MS.gene012600.t1 MTR_7g089010 58.621 58 24 0 198 255 90 147 2.53e-16 80.5
MS.gene012600.t1 MTR_5g014040 33.553 152 84 3 152 294 264 407 1.93e-15 79.7
MS.gene012600.t1 MTR_5g014040 38.400 125 71 3 18 140 14 134 2.40e-15 79.3
MS.gene012600.t1 MTR_4g098870 48.750 80 31 1 192 261 303 382 2.31e-15 79.7
MS.gene012600.t1 MTR_4g098870 34.677 124 77 2 18 140 14 134 5.82e-14 75.1
MS.gene012600.t1 MTR_5g014040 38.400 125 71 3 18 140 14 134 2.33e-15 79.3
MS.gene012600.t1 MTR_5g014040 32.484 157 84 4 152 294 264 412 1.50e-13 73.9
MS.gene012600.t1 MTR_4g098870 48.750 80 31 1 192 261 323 402 2.50e-15 79.3
MS.gene012600.t1 MTR_4g098870 34.677 124 77 2 18 140 34 154 7.33e-14 74.7
MS.gene012600.t1 MTR_4g098870 48.750 80 31 1 192 261 303 382 2.63e-15 79.3
MS.gene012600.t1 MTR_4g098870 34.677 124 77 2 18 140 14 134 3.69e-14 75.9
MS.gene012600.t1 MTR_4g098870 48.750 80 31 1 192 261 323 402 2.89e-15 79.3
MS.gene012600.t1 MTR_4g098870 34.677 124 77 2 18 140 34 154 4.73e-14 75.5
MS.gene012600.t1 MTR_4g098870 48.750 80 31 1 192 261 342 421 3.22e-15 79.3
MS.gene012600.t1 MTR_4g098870 34.677 124 77 2 18 140 53 173 5.82e-14 75.1
MS.gene012600.t1 MTR_7g115530 62.500 56 20 1 197 251 216 271 7.67e-14 72.8
MS.gene012600.t1 MTR_7g115530 62.500 56 20 1 197 251 216 271 1.31e-13 72.8
MS.gene012600.t1 MTR_5g014040 32.484 157 84 4 152 294 224 372 1.31e-13 73.9
MS.gene012600.t1 MTR_7g115530 62.500 56 20 1 197 251 216 271 1.41e-13 72.8
MS.gene012600.t1 MTR_7g115530 62.500 56 20 1 197 251 216 271 2.54e-13 72.8
MS.gene012600.t1 MTR_4g078810 42.857 84 46 1 197 280 156 237 3.00e-13 72.4
MS.gene012600.t1 MTR_2g090675 36.585 123 52 4 135 257 123 219 3.89e-13 72.0
MS.gene012600.t1 MTR_1g080330 60.714 56 21 1 197 251 173 228 4.25e-13 70.5
MS.gene012600.t1 MTR_1g080330 60.714 56 21 1 197 251 173 228 6.57e-13 70.9
MS.gene012600.t1 MTR_6g088950 30.827 133 82 3 48 176 34 160 1.57e-12 67.4
MS.gene012600.t1 MTR_7g490310 29.299 157 88 3 14 149 1 155 3.66e-12 67.0
MS.gene012600.t1 MTR_7g115530 61.111 54 20 1 197 249 216 269 4.74e-12 67.0
MS.gene012600.t1 MTR_7g098250 48.000 75 37 2 199 271 262 336 5.05e-12 68.9
MS.gene012600.t1 MTR_4g081710 49.153 59 29 1 195 252 13 71 5.75e-12 67.8
MS.gene012600.t1 MTR_2g027860 55.000 60 25 2 199 257 49 107 6.50e-12 67.4
MS.gene012600.t1 MTR_6g032990 54.237 59 26 1 195 252 38 96 7.96e-12 67.8
MS.gene012600.t1 MTR_7g115530 60.000 55 21 1 197 250 216 270 1.16e-11 66.2
MS.gene012600.t1 MTR_2g023580 60.000 55 21 1 198 251 54 108 1.62e-11 65.1
MS.gene012600.t1 MTR_5g041350 50.847 59 28 1 195 252 11 69 1.69e-11 66.2
MS.gene012600.t1 MTR_1g093080 44.928 69 36 2 188 255 201 268 2.10e-11 66.2
MS.gene012600.t1 MTR_4g086835 48.276 58 30 0 198 255 273 330 2.33e-11 66.2
MS.gene012600.t1 MTR_2g086450 50.847 59 28 1 195 252 41 99 4.71e-11 65.5
MS.gene012600.t1 MTR_4g113140 31.250 112 70 3 145 255 187 292 5.35e-11 65.5
MS.gene012600.t1 MTR_3g450310 49.296 71 29 2 188 251 2 72 6.11e-11 62.8
MS.gene012600.t1 MTR_0223s0040 54.545 66 29 1 198 262 17 82 8.22e-11 63.5
MS.gene012600.t1 MTR_5g017980 46.552 58 31 0 198 255 191 248 8.91e-11 63.9
MS.gene012600.t1 MTR_5g017980 46.552 58 31 0 198 255 192 249 9.22e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012600.t1 AT2G25180 46.757 370 169 7 18 362 13 379 2.91e-90 290
MS.gene012600.t1 AT4G31920 50.000 318 122 7 18 311 13 317 9.14e-81 264
MS.gene012600.t1 AT1G67710 55.078 256 105 5 17 265 5 257 2.41e-80 262
MS.gene012600.t1 AT3G16857 47.039 304 136 3 9 288 24 326 6.88e-80 265
MS.gene012600.t1 AT3G16857 44.311 334 157 4 9 314 24 356 1.78e-79 264
MS.gene012600.t1 AT5G58080 48.160 326 145 9 8 314 3 323 2.40e-79 262
MS.gene012600.t1 AT2G01760 50.195 257 112 4 18 260 7 261 9.01e-70 230
MS.gene012600.t1 AT2G01760 45.263 285 112 5 18 260 7 289 1.19e-63 214
MS.gene012600.t1 AT3G16857 43.706 286 132 4 57 314 2 286 3.25e-63 219
MS.gene012600.t1 AT5G49240 41.224 245 132 5 12 248 32 272 2.32e-52 181
MS.gene012600.t1 AT1G67710 52.308 195 84 4 77 265 1 192 3.63e-52 185
MS.gene012600.t1 AT2G01760 48.990 198 85 4 77 260 1 196 1.81e-46 166
MS.gene012600.t1 AT3G62670 39.662 237 125 6 23 251 42 268 1.71e-39 150
MS.gene012600.t1 AT1G49190 30.667 300 168 8 18 291 30 315 3.39e-39 148
MS.gene012600.t1 AT1G67710 47.701 174 82 4 98 265 13 183 8.13e-38 145
MS.gene012600.t1 AT5G07210 29.965 287 155 5 22 267 16 297 6.76e-32 130
MS.gene012600.t1 AT5G07210 29.153 295 155 6 22 267 16 305 1.98e-29 123
MS.gene012600.t1 AT2G27070 29.965 287 158 8 22 267 16 300 1.49e-28 120
MS.gene012600.t1 AT1G49190 36.800 125 79 0 18 142 30 154 7.87e-22 100
MS.gene012600.t1 AT2G46790 38.211 123 71 2 22 140 37 158 1.11e-21 98.6
MS.gene012600.t1 AT2G46790 38.211 123 71 2 22 140 37 158 1.28e-21 98.6
MS.gene012600.t1 AT5G24470 36.000 125 75 2 21 141 49 172 1.43e-21 99.0
MS.gene012600.t1 AT5G60100 38.525 122 72 1 22 140 64 185 1.92e-19 91.3
MS.gene012600.t1 AT5G60100 38.525 122 72 1 22 140 64 185 1.92e-19 91.3
MS.gene012600.t1 AT5G60100 38.525 122 72 1 22 140 64 185 1.92e-19 91.3
MS.gene012600.t1 AT1G68210 24.444 270 170 4 22 258 13 281 2.82e-19 92.4
MS.gene012600.t1 AT5G60100 38.525 122 72 1 22 140 64 185 4.13e-19 90.9
MS.gene012600.t1 AT5G60100 38.525 122 72 1 22 140 64 185 4.13e-19 90.9
MS.gene012600.t1 AT5G60100 38.525 122 72 1 22 140 64 185 4.13e-19 90.9
MS.gene012600.t1 AT5G60100 38.525 122 72 1 22 140 64 185 6.11e-19 90.9
MS.gene012600.t1 AT5G05090 50.667 75 37 0 181 255 63 137 1.22e-17 83.6
MS.gene012600.t1 AT5G59570 39.623 106 62 1 152 257 96 199 1.46e-17 84.0
MS.gene012600.t1 AT5G59570 39.623 106 62 1 152 257 96 199 1.46e-17 84.0
MS.gene012600.t1 AT3G46640 58.333 60 25 0 198 257 143 202 2.45e-17 84.0
MS.gene012600.t1 AT3G46640 58.333 60 25 0 198 257 143 202 2.45e-17 84.0
MS.gene012600.t1 AT5G02810 34.426 122 77 1 22 140 78 199 3.01e-17 85.9
MS.gene012600.t1 AT3G46640 60.345 58 23 0 198 255 143 200 3.65e-17 83.2
MS.gene012600.t1 AT2G40970 58.621 58 24 0 198 255 104 161 4.77e-17 81.6
MS.gene012600.t1 AT3G10760 55.385 65 29 0 191 255 97 161 5.59e-17 82.8
MS.gene012600.t1 AT5G61380 31.818 132 85 2 15 141 10 141 6.48e-17 84.7
MS.gene012600.t1 AT5G44190 61.818 55 21 0 197 251 145 199 1.68e-15 78.6
MS.gene012600.t1 AT5G44190 61.818 55 21 0 197 251 145 199 1.79e-15 79.0
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.38e-13 73.9
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.38e-13 73.9
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.38e-13 73.9
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.38e-13 73.9
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.38e-13 73.9
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.38e-13 73.9
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.94e-13 73.6
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.94e-13 73.6
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.94e-13 73.6
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.94e-13 73.6
MS.gene012600.t1 AT4G18020 34.266 143 85 3 16 151 12 152 1.94e-13 73.6
MS.gene012600.t1 AT2G20570 54.098 61 28 0 197 257 151 211 7.65e-13 71.2
MS.gene012600.t1 AT5G45580 50.000 70 32 2 194 262 4 71 1.25e-12 68.9
MS.gene012600.t1 AT5G45580 50.000 70 32 2 194 262 20 87 1.34e-12 68.9
MS.gene012600.t1 AT2G20570 59.259 54 22 0 204 257 174 227 2.93e-12 69.3
MS.gene012600.t1 AT2G01060 55.000 60 25 2 199 257 15 73 5.53e-12 67.4
MS.gene012600.t1 AT4G37180 51.667 60 28 1 197 255 208 267 3.12e-11 65.9
MS.gene012600.t1 AT3G04030 52.727 55 25 1 199 252 45 99 3.32e-11 65.9
MS.gene012600.t1 AT3G04030 52.727 55 25 1 199 252 45 99 3.63e-11 65.9
MS.gene012600.t1 AT4G37180 51.667 60 28 1 197 255 215 274 3.72e-11 65.5
MS.gene012600.t1 AT5G06800 50.000 66 31 2 199 263 192 256 5.14e-11 64.3
MS.gene012600.t1 AT5G18240 54.545 55 24 1 199 252 45 99 5.61e-11 65.1
MS.gene012600.t1 AT5G18240 54.545 55 24 1 199 252 45 99 5.61e-11 65.1
MS.gene012600.t1 AT5G18240 54.545 55 24 1 199 252 45 99 5.86e-11 65.1
MS.gene012600.t1 AT5G18240 54.545 55 24 1 199 252 45 99 5.86e-11 65.1
MS.gene012600.t1 AT5G18240 54.545 55 24 1 199 252 45 99 5.91e-11 65.1

Find 112 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATTGGTGTCTCGAAAT+TGG 0.144203 8.1:-2267426 None:intergenic
GATTATCTTGCTTCTTCTAA+TGG 0.232806 8.1:+2267983 MS.gene012600:CDS
CCACTTCTGACAGGGTTAAA+AGG 0.242635 8.1:-2267725 None:intergenic
GGACTTAAATTAATGTTATC+AGG 0.249835 8.1:-2267530 None:intergenic
AAGGGTTCAGTAGGTGGATA+TGG 0.252390 8.1:+2267275 MS.gene012600:CDS
AAAAGAAGCCTCGTTTAGTT+TGG 0.279239 8.1:+2266769 MS.gene012600:CDS
CAATGTCAAGATGGCTTACT+TGG 0.323761 8.1:+2267893 MS.gene012600:CDS
TGATTAATGAACTATTAGTT+TGG 0.331944 8.1:-2268036 None:intergenic
GAGCAATTGCTTAATGTAGA+TGG 0.338130 8.1:+2268130 MS.gene012600:CDS
CCCGGCGGGTATGCGTGTTC+TGG 0.339385 8.1:+2264463 MS.gene012600:CDS
CTCACTCAATGGAACAGAAT+TGG 0.343212 8.1:-2267765 None:intergenic
ATCATTAGTGATGGGGTATA+TGG 0.343848 8.1:+2266630 MS.gene012600:CDS
AAAGAAGCCTCGTTTAGTTT+GGG 0.355798 8.1:+2266770 MS.gene012600:CDS
AGACATCGTTGCTGTTCCTT+TGG 0.355803 8.1:+2267859 MS.gene012600:CDS
AACATTGGTGTCTCGAAATT+GGG 0.360580 8.1:-2267425 None:intergenic
CATTCCTTCCAAGTTCAAAC+TGG 0.363583 8.1:-2267360 None:intergenic
GATAAATATTCTGCTGAAAC+TGG 0.368030 8.1:-2267505 None:intergenic
GTTTCTGCAGTTAATCTTGT+CGG 0.368264 8.1:+2266816 MS.gene012600:CDS
CACACCATCCAGTTTGAACT+TGG 0.369083 8.1:+2267352 MS.gene012600:CDS
CTTCTCACATGCAACTATAA+TGG 0.375217 8.1:+2264530 MS.gene012600:CDS
TATCAAATGGCTATCTAAAC+AGG 0.381598 8.1:+2267217 MS.gene012600:CDS
CATCGTTGCTGTTCCTTTGG+AGG 0.383670 8.1:+2267862 MS.gene012600:CDS
ATAAATCACTCTCCTGTTGA+AGG 0.396905 8.1:+2267683 MS.gene012600:CDS
GATTAATGAACTATTAGTTT+GGG 0.399970 8.1:-2268035 None:intergenic
TCAGCAAGTCGGACTTGAAA+TGG 0.400458 8.1:+2266344 MS.gene012600:CDS
TCCAGCACTTTGAGATAAGT+TGG 0.404451 8.1:-2264500 None:intergenic
TCAAGTTAAGAAGTTCTATT+CGG 0.405277 8.1:+2268069 MS.gene012600:CDS
AAATGTATCCAGCCATTTGC+AGG 0.408981 8.1:+2267013 MS.gene012600:CDS
ACTGCATTTGAATCATCAAT+TGG 0.413674 8.1:-2267551 None:intergenic
AAGAAGTTCTATTCGGATCA+AGG 0.425942 8.1:+2268076 MS.gene012600:CDS
ATATAATTTGTACCTGCAAA+TGG 0.440246 8.1:-2267025 None:intergenic
TTCACAGCAGAACCTTCAAC+AGG 0.443727 8.1:-2267695 None:intergenic
TGAATTGTTGAGAGAAAAGA+AGG 0.450895 8.1:+2266260 MS.gene012600:CDS
AGCTTGAAGCCATCCATGTC+TGG 0.455651 8.1:-2266318 None:intergenic
ATTCTAGTTCATGATGGTTG+TGG 0.457111 8.1:+2264400 None:intergenic
ACATGGCATTCAAACGTCAA+TGG 0.462461 8.1:+2267475 MS.gene012600:CDS
AGAATTGGAAGCAAAGTTAG+AGG 0.465879 8.1:-2267750 None:intergenic
AGGGTTCAGTAGGTGGATAT+GGG 0.469935 8.1:+2267276 MS.gene012600:CDS
CATTGCATCGTTTCCTCCAA+AGG 0.471428 8.1:-2267875 None:intergenic
TACTACAACTACGAAGTCAT+TGG 0.471545 8.1:+2266230 MS.gene012600:CDS
GATACAGAATTGATATCAAA+TGG 0.472061 8.1:+2267204 MS.gene012600:CDS
TGACAGTGGCTCTGATGTCT+TGG 0.472341 8.1:-2267592 None:intergenic
CTTGACTTGATGAATGTTGA+AGG 0.474751 8.1:+2266978 MS.gene012600:CDS
TTCCTCCTTCAACAATACCT+TGG 0.479219 8.1:+2267961 MS.gene012600:CDS
TTAAGCTCTTCCATTCGAAT+CGG 0.481435 8.1:-2266549 None:intergenic
CAAGGAATCATGGAATCAAA+TGG 0.482889 8.1:+2268094 MS.gene012600:CDS
AATTTGTACCTGCAAATGGC+TGG 0.488638 8.1:-2267021 None:intergenic
TGGAAGAGCTTAAGAGCATA+TGG 0.489491 8.1:+2266559 MS.gene012600:CDS
TTCAGAATAGTCGTGTGCCT+TGG 0.491270 8.1:+2268158 MS.gene012600:CDS
GTTGGATCCCTACCAGCAAA+AGG 0.495630 8.1:+2267256 MS.gene012600:CDS
CAGCCGACAAAACATGTCAT+TGG 0.496819 8.1:-2267327 None:intergenic
TGAATGTTGAAGGGCTTACA+AGG 0.497287 8.1:+2266988 MS.gene012600:CDS
TTGTTAAAATCCTCACTCAA+TGG 0.497939 8.1:-2267776 None:intergenic
TAGAAAGAAGATTGAAAGCA+AGG 0.500776 8.1:+2266593 MS.gene012600:CDS
TTAGAGGAACCACTTCTGAC+AGG 0.501081 8.1:-2267734 None:intergenic
ATAATCCAAGGTATTGTTGA+AGG 0.508220 8.1:-2267966 None:intergenic
ATCAAGGTATCATTAGTGAT+GGG 0.510346 8.1:+2266622 MS.gene012600:CDS
AATCAAGGTATCATTAGTGA+TGG 0.511362 8.1:+2266621 MS.gene012600:CDS
TGTGTGATTTATAGTGTTGT+CGG 0.513795 8.1:+2266461 MS.gene012600:intron
GAAAGCAAGGATCAAAATCA+AGG 0.515217 8.1:+2266606 MS.gene012600:CDS
CCATCCAGTTTGAACTTGGA+AGG 0.517311 8.1:+2267356 MS.gene012600:CDS
AATGCAGTTACAGATTCCTC+TGG 0.518088 8.1:+2267566 MS.gene012600:CDS
CTTTCACTTTCATTAAACAT+TGG 0.526846 8.1:-2267440 None:intergenic
TCCAACTTATCTCAAAGTGC+TGG 0.528445 8.1:+2264499 MS.gene012600:CDS
TGGCTATCTAAACAGGATAG+AGG 0.531559 8.1:+2267224 MS.gene012600:CDS
CAATTCTGTTCCATTGAGTG+AGG 0.541688 8.1:+2267766 MS.gene012600:CDS
TGCTAACATCACTAATTACA+AGG 0.543736 8.1:-2266293 None:intergenic
CTATTCGGATCAAGGAATCA+TGG 0.544673 8.1:+2268084 MS.gene012600:CDS
CAGCAAAAGGGTTCAGTAGG+TGG 0.548262 8.1:+2267269 MS.gene012600:CDS
GCCAGAACACGCATACCCGC+CGG 0.553676 8.1:-2264464 None:intergenic
ATGGTTGTGGAGGATAGTTT+CGG 0.554649 8.1:+2264413 MS.gene012600:CDS
CCTTCCAAGTTCAAACTGGA+TGG 0.554980 8.1:-2267356 None:intergenic
TTCACTTATTGTGTCGTCCA+AGG 0.555755 8.1:-2268175 None:intergenic
TTAGGAGAAGGTTTCCCGGC+GGG 0.561505 8.1:+2264449 MS.gene012600:CDS
ATGTCATTGGATGCATATGC+TGG 0.565239 8.1:-2267314 None:intergenic
TAATGGAGACACTAGTTCCA+TGG 0.565315 8.1:+2268000 MS.gene012600:CDS
CCAGAACACGCATACCCGCC+GGG 0.571213 8.1:-2264463 None:intergenic
TTTCAAGTCCGACTTGCTGA+AGG 0.572445 8.1:-2266341 None:intergenic
TTGGATCCCTACCAGCAAAA+GGG 0.576563 8.1:+2267257 MS.gene012600:CDS
TTGACTTGATGAATGTTGAA+GGG 0.580486 8.1:+2266979 MS.gene012600:CDS
GAAACGATGCAATGTCAAGA+TGG 0.582127 8.1:+2267884 MS.gene012600:CDS
GGATAGAGGAGATGATGCGT+TGG 0.582696 8.1:+2267238 MS.gene012600:CDS
TTGGGCTAAACTTTGTACCA+TGG 0.585108 8.1:-2268017 None:intergenic
GAATAGAACTTCTTAACTTG+AGG 0.585570 8.1:-2268067 None:intergenic
AAGAAAGGTACAAAGTGAGG+AGG 0.585901 8.1:+2266707 MS.gene012600:CDS
GAAAGTTCGAGTTCTTTACA+TGG 0.585974 8.1:+2267458 MS.gene012600:CDS
TTCAAGCTCCTTCAGCAAGT+CGG 0.589889 8.1:+2266333 MS.gene012600:CDS
AACATTTGCATTATTGACAG+TGG 0.591551 8.1:-2267606 None:intergenic
GGGTTCAGTAGGTGGATATG+GGG 0.592030 8.1:+2267277 MS.gene012600:CDS
CTAGTTCATGATGGTTGTGG+AGG 0.595087 8.1:+2264403 None:intergenic
AGAAGAAGCAAGATAATCCA+AGG 0.597269 8.1:-2267978 None:intergenic
TGATGTTAGCATGCCAGACA+TGG 0.598210 8.1:+2266305 MS.gene012600:CDS
TCTAGTGAAACCGATTCGAA+TGG 0.598674 8.1:+2266539 MS.gene012600:CDS
ATGTTATGAGACTGAAGTGG+AGG 0.606395 8.1:-2267401 None:intergenic
GCTAACAAGAATAAAACGCA+TGG 0.616521 8.1:+2266678 MS.gene012600:CDS
AATGTCAAGATGGCTTACTT+GGG 0.618703 8.1:+2267894 MS.gene012600:CDS
TACCAGCAAAAGGGTTCAGT+AGG 0.620378 8.1:+2267266 MS.gene012600:CDS
TAGAGGAACCACTTCTGACA+GGG 0.620617 8.1:-2267733 None:intergenic
ATCCAAGGTATTGTTGAAGG+AGG 0.626426 8.1:-2267963 None:intergenic
GGTAAATGATGACATAGAGA+AGG 0.627198 8.1:+2266482 MS.gene012600:CDS
TCAAGGTATCATTAGTGATG+GGG 0.639460 8.1:+2266623 MS.gene012600:CDS
TGTGTGAGCTTACTGATGAA+AGG 0.640199 8.1:-2266372 None:intergenic
TCTGATGTCTTGGAAGCCAG+AGG 0.643398 8.1:-2267582 None:intergenic
CTTAAATTAATGTTATCAGG+CGG 0.647690 8.1:-2267527 None:intergenic
GTTAGCATGCCAGACATGGA+TGG 0.657571 8.1:+2266309 MS.gene012600:CDS
TGAGCTTACTGATGAAAGGT+AGG 0.657693 8.1:-2266368 None:intergenic
TGTTATGAGACTGAAGTGGA+GGG 0.664363 8.1:-2267400 None:intergenic
GGAATGTTATGAGACTGAAG+TGG 0.672395 8.1:-2267404 None:intergenic
GAATGTTGAAGGGCTTACAA+GGG 0.675399 8.1:+2266989 MS.gene012600:CDS
GTGATGAAGAGTGTGATGCA+TGG 0.683135 8.1:+2266504 MS.gene012600:CDS
TCATGATCCCAAACTAAACG+AGG 0.706682 8.1:-2266777 None:intergenic
TTTAGGAGAAGGTTTCCCGG+CGG 0.790759 8.1:+2264448 MS.gene012600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGATAGTAAATAAA+TGG - chr8.1:2265796-2265815 None:intergenic 10.0%
!! AAAAATCTGAATATAAGAAA+TGG - chr8.1:2266437-2266456 None:intergenic 15.0%
!! AAATAAATGGAAATTATCTT+CGG - chr8.1:2265783-2265802 None:intergenic 15.0%
!! CAATTTACTAAAAAAAACTA+AGG - chr8.1:2264712-2264731 None:intergenic 15.0%
!! TAAAAAAATCCAAAACAAAA+GGG + chr8.1:2266028-2266047 MS.gene012600:intron 15.0%
!! TTAAAAAAATCCAAAACAAA+AGG + chr8.1:2266027-2266046 MS.gene012600:intron 15.0%
!!! CTTAGTTTTTTTTAGTAAAT+TGG + chr8.1:2264710-2264729 MS.gene012600:intron 15.0%
!! AAAAAAATCACTAATATGTC+AGG - chr8.1:2266121-2266140 None:intergenic 20.0%
!! AATGATTATTACTGCTTTAT+TGG + chr8.1:2266094-2266113 MS.gene012600:intron 20.0%
!! ATAAGAAATGGATCTTAATT+AGG - chr8.1:2266425-2266444 None:intergenic 20.0%
!! TGATGAATGATTCTTAAATA+TGG + chr8.1:2266891-2266910 MS.gene012600:intron 20.0%
!! TGATTAATGAACTATTAGTT+TGG - chr8.1:2268039-2268058 None:intergenic 20.0%
!!! AAAAATTTGTTTGTTCAGTT+CGG + chr8.1:2264893-2264912 MS.gene012600:intron 20.0%
!!! AAACCTTTTTTTTTTCTTTG+AGG + chr8.1:2264671-2264690 MS.gene012600:intron 20.0%
!!! AGATGTGTTACAATTTTTTA+GGG - chr8.1:2265224-2265243 None:intergenic 20.0%
!!! ATGATTATTACTGCTTTATT+GGG + chr8.1:2266095-2266114 MS.gene012600:intron 20.0%
!!! ATTCTTGTTAGCAATATTTT+CGG - chr8.1:2266670-2266689 None:intergenic 20.0%
!!! GATTAATGAACTATTAGTTT+GGG - chr8.1:2268038-2268057 None:intergenic 20.0%
!!! TTTGAGATTTTTTGACAAAA+GGG - chr8.1:2267059-2267078 None:intergenic 20.0%
!!! TTTTTAGTAAATTGGTGATT+AGG + chr8.1:2264718-2264737 MS.gene012600:intron 20.0%
! AACTACAACCTATTTATCAT+AGG + chr8.1:2265434-2265453 MS.gene012600:intron 25.0%
! AAGTTACTCAATAGTTATAG+TGG - chr8.1:2264961-2264980 None:intergenic 25.0%
! ACACCAATAAAACTTATTTG+TGG + chr8.1:2264784-2264803 MS.gene012600:intron 25.0%
! AGTGTATATTTATGCTTCAT+AGG + chr8.1:2265524-2265543 MS.gene012600:intron 25.0%
! AGTTGAAGAAACTACATATT+AGG - chr8.1:2266928-2266947 None:intergenic 25.0%
! ATTGAATGAACGAAAAAGAA+AGG - chr8.1:2264563-2264582 None:intergenic 25.0%
! CTTAAATTAATGTTATCAGG+CGG - chr8.1:2267530-2267549 None:intergenic 25.0%
! CTTTCACTTTCATTAAACAT+TGG - chr8.1:2267443-2267462 None:intergenic 25.0%
! GATACAGAATTGATATCAAA+TGG + chr8.1:2267204-2267223 MS.gene012600:CDS 25.0%
! GGACTTAAATTAATGTTATC+AGG - chr8.1:2267533-2267552 None:intergenic 25.0%
! GTTCTAGTATGATTTAAACA+TGG - chr8.1:2265411-2265430 None:intergenic 25.0%
! TCAAGTTAAGAAGTTCTATT+CGG + chr8.1:2268069-2268088 MS.gene012600:CDS 25.0%
! TTACATAGCCTATGATAAAT+AGG - chr8.1:2265445-2265464 None:intergenic 25.0%
!! ATATAATTTGTACCTGCAAA+TGG - chr8.1:2267028-2267047 None:intergenic 25.0%
!! ATCAAGTCAAGTATTTTCTT+AGG - chr8.1:2266969-2266988 None:intergenic 25.0%
!! TTTTCTGCATCATTAAAAAC+CGG + chr8.1:2265267-2265286 MS.gene012600:intron 25.0%
!! TTTTTCCTTCTTTTTCTGAA+TGG + chr8.1:2266138-2266157 MS.gene012600:intron 25.0%
!!! CAAAACAGATTTTAAGAGAA+AGG - chr8.1:2266398-2266417 None:intergenic 25.0%
!!! GAGATGTGTTACAATTTTTT+AGG - chr8.1:2265225-2265244 None:intergenic 25.0%
!!! GTTTGAGATTTTTTGACAAA+AGG - chr8.1:2267060-2267079 None:intergenic 25.0%
!!! TTGAATAACTTTTCGATTTG+AGG + chr8.1:2265893-2265912 MS.gene012600:intron 25.0%
AACATTTGCATTATTGACAG+TGG - chr8.1:2267609-2267628 None:intergenic 30.0%
ACGCCTCAAAGAAAAAAAAA+AGG - chr8.1:2264677-2264696 None:intergenic 30.0%
ACTCAATAGTTATAGTGGTA+CGG - chr8.1:2264956-2264975 None:intergenic 30.0%
ACTGCATTTGAATCATCAAT+TGG - chr8.1:2267554-2267573 None:intergenic 30.0%
ACTTCTGTCTCGTAAAAAAT+CGG - chr8.1:2265317-2265336 None:intergenic 30.0%
ATGTAGAGAGTAGAAAAACA+AGG - chr8.1:2265154-2265173 None:intergenic 30.0%
CTTTGGCAAAAGAATGAATT+AGG - chr8.1:2264990-2265009 None:intergenic 30.0%
GATAAATATTCTGCTGAAAC+TGG - chr8.1:2267508-2267527 None:intergenic 30.0%
GATTATCTTGCTTCTTCTAA+TGG + chr8.1:2267983-2268002 MS.gene012600:CDS 30.0%
TAAACCTTGTATCAGATGAA+AGG - chr8.1:2265183-2265202 None:intergenic 30.0%
TAGAAAGAAGATTGAAAGCA+AGG + chr8.1:2266593-2266612 MS.gene012600:CDS 30.0%
TATCAAATGGCTATCTAAAC+AGG + chr8.1:2267217-2267236 MS.gene012600:CDS 30.0%
TCAAAACCACACCTAAAATT+GGG + chr8.1:2265338-2265357 MS.gene012600:intron 30.0%
TGAATTGTTGAGAGAAAAGA+AGG + chr8.1:2266260-2266279 MS.gene012600:CDS 30.0%
TGCAATCGAAAATGAAAATG+AGG - chr8.1:2267182-2267201 None:intergenic 30.0%
TGCTAACATCACTAATTACA+AGG - chr8.1:2266296-2266315 None:intergenic 30.0%
TGTAGAGAGTAGAAAAACAA+GGG - chr8.1:2265153-2265172 None:intergenic 30.0%
TGTGTGATTTATAGTGTTGT+CGG + chr8.1:2266461-2266480 MS.gene012600:intron 30.0%
TTCTTCAACTATTATTGCAG+AGG + chr8.1:2266938-2266957 MS.gene012600:intron 30.0%
TTGTTAAAATCCTCACTCAA+TGG - chr8.1:2267779-2267798 None:intergenic 30.0%
TTTCAACCGTATTTGCAAAA+AGG - chr8.1:2267112-2267131 None:intergenic 30.0%
! AAAAAGAAAGGTACAAAGTG+AGG + chr8.1:2266704-2266723 MS.gene012600:CDS 30.0%
! AATCAAGGTATCATTAGTGA+TGG + chr8.1:2266621-2266640 MS.gene012600:CDS 30.0%
! ATCAAGGTATCATTAGTGAT+GGG + chr8.1:2266622-2266641 MS.gene012600:CDS 30.0%
! GAATAGAACTTCTTAACTTG+AGG - chr8.1:2268070-2268089 None:intergenic 30.0%
! TAAATCACTAGCTTGATTCT+TGG + chr8.1:2266192-2266211 MS.gene012600:intron 30.0%
! TTGACTTGATGAATGTTGAA+GGG + chr8.1:2266979-2266998 MS.gene012600:CDS 30.0%
! TTTTGATGTTGTGAGTAACA+TGG - chr8.1:2267935-2267954 None:intergenic 30.0%
! TTTTGCCATTCAGAAAAAGA+AGG - chr8.1:2266146-2266165 None:intergenic 30.0%
!! ATAATCCAAGGTATTGTTGA+AGG - chr8.1:2267969-2267988 None:intergenic 30.0%
!! GCTCCACAAATAAGTTTTAT+TGG - chr8.1:2264790-2264809 None:intergenic 30.0%
!! TTGGAAGTAGCTTTGATATA+AGG + chr8.1:2264648-2264667 MS.gene012600:intron 30.0%
AAAAGAAGCCTCGTTTAGTT+TGG + chr8.1:2266769-2266788 MS.gene012600:CDS 35.0%
AACGCATGGACAAAAAAGAA+AGG + chr8.1:2266692-2266711 MS.gene012600:CDS 35.0%
AAGAAGTTCTATTCGGATCA+AGG + chr8.1:2268076-2268095 MS.gene012600:CDS 35.0%
AATGTCAAGATGGCTTACTT+GGG + chr8.1:2267894-2267913 MS.gene012600:CDS 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr8.1:2265033-2265052 None:intergenic 35.0%
AGAAGAAGCAAGATAATCCA+AGG - chr8.1:2267981-2268000 None:intergenic 35.0%
AGAATTGGAAGCAAAGTTAG+AGG - chr8.1:2267753-2267772 None:intergenic 35.0%
ATAAATCACTCTCCTGTTGA+AGG + chr8.1:2267683-2267702 MS.gene012600:CDS 35.0%
ATAGGCTATGTAAATGTGTC+CGG + chr8.1:2265452-2265471 MS.gene012600:intron 35.0%
ATCCTAATAGTGTTTCTCCA+AGG + chr8.1:2265042-2265061 MS.gene012600:intron 35.0%
CAAGGAATCATGGAATCAAA+TGG + chr8.1:2268094-2268113 MS.gene012600:CDS 35.0%
CACTAATACATATCAGACTC+CGG - chr8.1:2265474-2265493 None:intergenic 35.0%
CTCAAAACCACACCTAAAAT+TGG + chr8.1:2265337-2265356 MS.gene012600:intron 35.0%
CTTCTCACATGCAACTATAA+TGG + chr8.1:2264530-2264549 MS.gene012600:CDS 35.0%
GAAAGCAAGGATCAAAATCA+AGG + chr8.1:2266606-2266625 MS.gene012600:CDS 35.0%
GAGCAATTGCTTAATGTAGA+TGG + chr8.1:2268130-2268149 MS.gene012600:CDS 35.0%
GCAACGGTGTAAACATATAT+TGG + chr8.1:2264629-2264648 MS.gene012600:intron 35.0%
GCTAACAAGAATAAAACGCA+TGG + chr8.1:2266678-2266697 MS.gene012600:CDS 35.0%
GGTAAATGATGACATAGAGA+AGG + chr8.1:2266482-2266501 MS.gene012600:CDS 35.0%
GTCGAAGAAAAATGAGAACT+GGG - chr8.1:2267839-2267858 None:intergenic 35.0%
GTTTCTGCAGTTAATCTTGT+CGG + chr8.1:2266816-2266835 MS.gene012600:CDS 35.0%
TACTACAACTACGAAGTCAT+TGG + chr8.1:2266230-2266249 MS.gene012600:CDS 35.0%
TAGAAACCACCACAAAACTA+GGG - chr8.1:2265128-2265147 None:intergenic 35.0%
TCTCTTTGCAACAAACACTA+GGG - chr8.1:2265093-2265112 None:intergenic 35.0%
TGTCGAAGAAAAATGAGAAC+TGG - chr8.1:2267840-2267859 None:intergenic 35.0%
TTAAGCTCTTCCATTCGAAT+CGG - chr8.1:2266552-2266571 None:intergenic 35.0%
TTAGAAACCACCACAAAACT+AGG - chr8.1:2265129-2265148 None:intergenic 35.0%
TTCTCTTTGCAACAAACACT+AGG - chr8.1:2265094-2265113 None:intergenic 35.0%
! AAACATTGGTGTCTCGAAAT+TGG - chr8.1:2267429-2267448 None:intergenic 35.0%
! AAAGAAGCCTCGTTTAGTTT+GGG + chr8.1:2266770-2266789 MS.gene012600:CDS 35.0%
! AACATTGGTGTCTCGAAATT+GGG - chr8.1:2267428-2267447 None:intergenic 35.0%
! ATCATTAGTGATGGGGTATA+TGG + chr8.1:2266630-2266649 MS.gene012600:CDS 35.0%
! CATCCAATGACATGTTTTGT+CGG + chr8.1:2267324-2267343 MS.gene012600:CDS 35.0%
! CTTGACTTGATGAATGTTGA+AGG + chr8.1:2266978-2266997 MS.gene012600:CDS 35.0%
! GAAAGTTCGAGTTCTTTACA+TGG + chr8.1:2267458-2267477 MS.gene012600:CDS 35.0%
! GTTAGCAATATTTTCGGATG+AGG - chr8.1:2266664-2266683 None:intergenic 35.0%
! TCAAGGTATCATTAGTGATG+GGG + chr8.1:2266623-2266642 MS.gene012600:CDS 35.0%
! TCACCTCCTTTTTGCAAATA+CGG + chr8.1:2267103-2267122 MS.gene012600:intron 35.0%
! TTTGAGGTAGCTTAGACATT+CGG - chr8.1:2265569-2265588 None:intergenic 35.0%
!! AAACACAGACCCTTTTGTTT+TGG - chr8.1:2266040-2266059 None:intergenic 35.0%
!!! GGTGATTAGGTTAGTTTTCA+CGG + chr8.1:2264731-2264750 MS.gene012600:intron 35.0%
!!! GTTAGTTTTCACGGTTTGAA+CGG + chr8.1:2264740-2264759 MS.gene012600:intron 35.0%
AAATGTATCCAGCCATTTGC+AGG + chr8.1:2267013-2267032 MS.gene012600:CDS 40.0%
AATGCAGTTACAGATTCCTC+TGG + chr8.1:2267566-2267585 MS.gene012600:CDS 40.0%
AATTTGTACCTGCAAATGGC+TGG - chr8.1:2267024-2267043 None:intergenic 40.0%
ACATGGCATTCAAACGTCAA+TGG + chr8.1:2267475-2267494 MS.gene012600:CDS 40.0%
ACTATTCTCCTCTCATGCAA+CGG + chr8.1:2264613-2264632 MS.gene012600:intron 40.0%
ATCAAGCAACGAAAACAACG+TGG + chr8.1:2264816-2264835 MS.gene012600:intron 40.0%
ATGGTTGTGGAGGATAGTTT+CGG + chr8.1:2264413-2264432 MS.gene012600:CDS 40.0%
ATGTCATTGGATGCATATGC+TGG - chr8.1:2267317-2267336 None:intergenic 40.0%
ATGTTATGAGACTGAAGTGG+AGG - chr8.1:2267404-2267423 None:intergenic 40.0%
CAACCGTATTTGCAAAAAGG+AGG - chr8.1:2267109-2267128 None:intergenic 40.0%
CAACTGATATGTGTGTGAGT+AGG - chr8.1:2265623-2265642 None:intergenic 40.0%
CAATGTCAAGATGGCTTACT+TGG + chr8.1:2267893-2267912 MS.gene012600:CDS 40.0%
CAATTCTGTTCCATTGAGTG+AGG + chr8.1:2267766-2267785 MS.gene012600:CDS 40.0%
CACCTTGGAGAAACACTATT+AGG - chr8.1:2265047-2265066 None:intergenic 40.0%
CATTCCTTCCAAGTTCAAAC+TGG - chr8.1:2267363-2267382 None:intergenic 40.0%
CTATTCGGATCAAGGAATCA+TGG + chr8.1:2268084-2268103 MS.gene012600:CDS 40.0%
CTCACCTTTCATCTGATACA+AGG + chr8.1:2265176-2265195 MS.gene012600:intron 40.0%
CTCACTCAATGGAACAGAAT+TGG - chr8.1:2267768-2267787 None:intergenic 40.0%
GAAACGATGCAATGTCAAGA+TGG + chr8.1:2267884-2267903 MS.gene012600:CDS 40.0%
GAATGTTGAAGGGCTTACAA+GGG + chr8.1:2266989-2267008 MS.gene012600:CDS 40.0%
GGAATGTTATGAGACTGAAG+TGG - chr8.1:2267407-2267426 None:intergenic 40.0%
TAATGGAGACACTAGTTCCA+TGG + chr8.1:2268000-2268019 MS.gene012600:CDS 40.0%
TCAAGCAACGAAAACAACGT+GGG + chr8.1:2264817-2264836 MS.gene012600:intron 40.0%
TCATGATCCCAAACTAAACG+AGG - chr8.1:2266780-2266799 None:intergenic 40.0%
TCCAACTTATCTCAAAGTGC+TGG + chr8.1:2264499-2264518 MS.gene012600:CDS 40.0%
TGAATGTTGAAGGGCTTACA+AGG + chr8.1:2266988-2267007 MS.gene012600:CDS 40.0%
TGAGCTTACTGATGAAAGGT+AGG - chr8.1:2266371-2266390 None:intergenic 40.0%
TGGCTATCTAAACAGGATAG+AGG + chr8.1:2267224-2267243 MS.gene012600:CDS 40.0%
TGTGTGAGCTTACTGATGAA+AGG - chr8.1:2266375-2266394 None:intergenic 40.0%
TGTTATGAGACTGAAGTGGA+GGG - chr8.1:2267403-2267422 None:intergenic 40.0%
TTCCTCCTTCAACAATACCT+TGG + chr8.1:2267961-2267980 MS.gene012600:CDS 40.0%
TTGAGGTAGCTTAGACATTC+GGG - chr8.1:2265568-2265587 None:intergenic 40.0%
TTGCAACAAACACTAGGGTT+GGG - chr8.1:2265088-2265107 None:intergenic 40.0%
TTGGGCTAAACTTTGTACCA+TGG - chr8.1:2268020-2268039 None:intergenic 40.0%
TTTGCAACAAACACTAGGGT+TGG - chr8.1:2265089-2265108 None:intergenic 40.0%
! AAGAAAGGTACAAAGTGAGG+AGG + chr8.1:2266707-2266726 MS.gene012600:CDS 40.0%
! ACTAAACGAGGCTTCTTTTG+AGG - chr8.1:2266768-2266787 None:intergenic 40.0%
! TCTGAAACTGCCAAAATCGA+CGG - chr8.1:2265384-2265403 None:intergenic 40.0%
! TCTTTTGCCAAGACTGTTGT+GGG + chr8.1:2265676-2265695 MS.gene012600:intron 40.0%
! TGGAAGAGCTTAAGAGCATA+TGG + chr8.1:2266559-2266578 MS.gene012600:CDS 40.0%
! TGTTGTGGGTGTGTTTGTTT+TGG + chr8.1:2265690-2265709 MS.gene012600:intron 40.0%
! TTCTTTTGCCAAGACTGTTG+TGG + chr8.1:2265675-2265694 MS.gene012600:intron 40.0%
!! ATCCAAGGTATTGTTGAAGG+AGG - chr8.1:2267966-2267985 None:intergenic 40.0%
!! GAGTCATCATTGATTCACCT+TGG - chr8.1:2265062-2265081 None:intergenic 40.0%
!! TCCAGCACTTTGAGATAAGT+TGG - chr8.1:2264503-2264522 None:intergenic 40.0%
!! TCTAGTGAAACCGATTCGAA+TGG + chr8.1:2266539-2266558 MS.gene012600:CDS 40.0%
!!! CTCTACAAACCCTAGTTTTG+TGG + chr8.1:2265116-2265135 MS.gene012600:intron 40.0%
!!! GTTGACGATGTTTTAGGAGA+AGG + chr8.1:2264437-2264456 MS.gene012600:CDS 40.0%
!!! TACAAACCCTAGTTTTGTGG+TGG + chr8.1:2265119-2265138 MS.gene012600:intron 40.0%
!!! TGTTTTAGGAGAAGGTTTCC+CGG + chr8.1:2264445-2264464 MS.gene012600:CDS 40.0%
!!! TTCGGTGTTGACGATGTTTT+AGG + chr8.1:2264431-2264450 MS.gene012600:CDS 40.0%
AAACACACCCACAACAGTCT+TGG - chr8.1:2265686-2265705 None:intergenic 45.0%
AAGGGTTCAGTAGGTGGATA+TGG + chr8.1:2267275-2267294 MS.gene012600:CDS 45.0%
AGGATTGAGTCTCTTGGTCA+CGG - chr8.1:2265027-2265046 None:intergenic 45.0%
AGGGTTCAGTAGGTGGATAT+GGG + chr8.1:2267276-2267295 MS.gene012600:CDS 45.0%
CACACCATCCAGTTTGAACT+TGG + chr8.1:2267352-2267371 MS.gene012600:CDS 45.0%
CAGCCGACAAAACATGTCAT+TGG - chr8.1:2267330-2267349 None:intergenic 45.0%
CATTGCATCGTTTCCTCCAA+AGG - chr8.1:2267878-2267897 None:intergenic 45.0%
CCAATACTGACCTACTTTGG+AGG + chr8.1:2264917-2264936 MS.gene012600:intron 45.0%
CCACTTCTGACAGGGTTAAA+AGG - chr8.1:2267728-2267747 None:intergenic 45.0%
CCATCCAGTTTGAACTTGGA+AGG + chr8.1:2267356-2267375 MS.gene012600:CDS 45.0%
CCTCCAAAGTAGGTCAGTAT+TGG - chr8.1:2264920-2264939 None:intergenic 45.0%
CCTTCCAAGTTCAAACTGGA+TGG - chr8.1:2267359-2267378 None:intergenic 45.0%
CGGTTTGAACGGTTGTGAAT+CGG + chr8.1:2264751-2264770 MS.gene012600:intron 45.0%
CTTGGTCACGGAAAGAGATT+CGG - chr8.1:2265015-2265034 None:intergenic 45.0%
GAAGTGAGAAAATCGGAGTC+CGG - chr8.1:2265289-2265308 None:intergenic 45.0%
GGTCCAATACTGACCTACTT+TGG + chr8.1:2264914-2264933 MS.gene012600:intron 45.0%
TACCAGCAAAAGGGTTCAGT+AGG + chr8.1:2267266-2267285 MS.gene012600:CDS 45.0%
TAGAGGAACCACTTCTGACA+GGG - chr8.1:2267736-2267755 None:intergenic 45.0%
TCAGCAAGTCGGACTTGAAA+TGG + chr8.1:2266344-2266363 MS.gene012600:CDS 45.0%
TGATGTTAGCATGCCAGACA+TGG + chr8.1:2266305-2266324 MS.gene012600:CDS 45.0%
TGTTTACACCGTTGCATGAG+AGG - chr8.1:2264624-2264643 None:intergenic 45.0%
TTAGAGGAACCACTTCTGAC+AGG - chr8.1:2267737-2267756 None:intergenic 45.0%
TTCAAGCTCCTTCAGCAAGT+CGG + chr8.1:2266333-2266352 MS.gene012600:CDS 45.0%
TTCACAGCAGAACCTTCAAC+AGG - chr8.1:2267698-2267717 None:intergenic 45.0%
TTCAGAATAGTCGTGTGCCT+TGG + chr8.1:2268158-2268177 MS.gene012600:CDS 45.0%
TTGGATCCCTACCAGCAAAA+GGG + chr8.1:2267257-2267276 MS.gene012600:CDS 45.0%
TTGGTCACGGAAAGAGATTC+GGG - chr8.1:2265014-2265033 None:intergenic 45.0%
! ACTGAACCCTTTTGCTGGTA+GGG - chr8.1:2267266-2267285 None:intergenic 45.0%
! AGACATCGTTGCTGTTCCTT+TGG + chr8.1:2267859-2267878 MS.gene012600:CDS 45.0%
! AGCAATCGAGGCCCAATTTT+AGG - chr8.1:2265352-2265371 None:intergenic 45.0%
! CCTTTTAACCCTGTCAGAAG+TGG + chr8.1:2267725-2267744 MS.gene012600:CDS 45.0%
! GACTCCGATTTTCTCACTTC+GGG + chr8.1:2265289-2265308 MS.gene012600:intron 45.0%
! GGACTCCGATTTTCTCACTT+CGG + chr8.1:2265288-2265307 MS.gene012600:intron 45.0%
! GTGATGAAGAGTGTGATGCA+TGG + chr8.1:2266504-2266523 MS.gene012600:CDS 45.0%
! GTGTGAGTAGGTAGCTTTAC+TGG - chr8.1:2265611-2265630 None:intergenic 45.0%
! TACTGAACCCTTTTGCTGGT+AGG - chr8.1:2267267-2267286 None:intergenic 45.0%
!! TTTCAAGTCCGACTTGCTGA+AGG - chr8.1:2266344-2266363 None:intergenic 45.0%
!!! AAAATATTTTGTTAAAAAAA+TGG - chr8.1:2265931-2265950 None:intergenic 5.0%
!!! AAATTATATAAGTATTTTTT+TGG + chr8.1:2265978-2265997 MS.gene012600:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr8.1:2265585-2265604 None:intergenic 5.0%
AGCAACGAAAACAACGTGGG+TGG + chr8.1:2264820-2264839 MS.gene012600:intron 50.0%
AGCTTGAAGCCATCCATGTC+TGG - chr8.1:2266321-2266340 None:intergenic 50.0%
CAGCAAAAGGGTTCAGTAGG+TGG + chr8.1:2267269-2267288 MS.gene012600:CDS 50.0%
CGGAAAGAGATTCGGGACTT+TGG - chr8.1:2265007-2265026 None:intergenic 50.0%
GGATAGAGGAGATGATGCGT+TGG + chr8.1:2267238-2267257 MS.gene012600:CDS 50.0%
GGGTTCAGTAGGTGGATATG+GGG + chr8.1:2267277-2267296 MS.gene012600:CDS 50.0%
GTTAGCATGCCAGACATGGA+TGG + chr8.1:2266309-2266328 MS.gene012600:CDS 50.0%
GTTGGATCCCTACCAGCAAA+AGG + chr8.1:2267256-2267275 MS.gene012600:CDS 50.0%
TCTGATGTCTTGGAAGCCAG+AGG - chr8.1:2267585-2267604 None:intergenic 50.0%
TTTAGGAGAAGGTTTCCCGG+CGG + chr8.1:2264448-2264467 MS.gene012600:CDS 50.0%
! CACCTACTGAACCCTTTTGC+TGG - chr8.1:2267271-2267290 None:intergenic 50.0%
! CATCGTTGCTGTTCCTTTGG+AGG + chr8.1:2267862-2267881 MS.gene012600:CDS 50.0%
!! TCGAGGCCCAATTTTAGGTG+TGG - chr8.1:2265347-2265366 None:intergenic 50.0%
!! TGACAGTGGCTCTGATGTCT+TGG - chr8.1:2267595-2267614 None:intergenic 50.0%
!!! TCCAAATCGGCCGTCGATTT+TGG + chr8.1:2265371-2265390 MS.gene012600:intron 50.0%
GCCAAAATCGACGGCCGATT+TGG - chr8.1:2265375-2265394 None:intergenic 55.0%
GCTGCTCTCTCCTCCAAAGT+AGG - chr8.1:2264930-2264949 None:intergenic 55.0%
GGCGCCCGAAGTGAGAAAAT+CGG - chr8.1:2265296-2265315 None:intergenic 55.0%
GGGCCTCGATTGCTCCAAAT+CGG + chr8.1:2265358-2265377 MS.gene012600:intron 55.0%
TTAGGAGAAGGTTTCCCGGC+GGG + chr8.1:2264449-2264468 MS.gene012600:CDS 55.0%
!! CGGCCGATTTGGAGCAATCG+AGG - chr8.1:2265364-2265383 None:intergenic 60.0%
CCAGAACACGCATACCCGCC+GGG - chr8.1:2264466-2264485 None:intergenic 65.0%
GCCAGAACACGCATACCCGC+CGG - chr8.1:2264467-2264486 None:intergenic 65.0%
CCCGGCGGGTATGCGTGTTC+TGG + chr8.1:2264463-2264482 MS.gene012600:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 2264410 2268192 2264410 ID=MS.gene012600
chr8.1 mRNA 2264410 2268192 2264410 ID=MS.gene012600.t1;Parent=MS.gene012600
chr8.1 exon 2264410 2264551 2264410 ID=MS.gene012600.t1.exon1;Parent=MS.gene012600.t1
chr8.1 CDS 2264410 2264551 2264410 ID=cds.MS.gene012600.t1;Parent=MS.gene012600.t1
chr8.1 exon 2266229 2266381 2266229 ID=MS.gene012600.t1.exon2;Parent=MS.gene012600.t1
chr8.1 CDS 2266229 2266381 2266229 ID=cds.MS.gene012600.t1;Parent=MS.gene012600.t1
chr8.1 exon 2266475 2266846 2266475 ID=MS.gene012600.t1.exon3;Parent=MS.gene012600.t1
chr8.1 CDS 2266475 2266846 2266475 ID=cds.MS.gene012600.t1;Parent=MS.gene012600.t1
chr8.1 exon 2266958 2267034 2266958 ID=MS.gene012600.t1.exon4;Parent=MS.gene012600.t1
chr8.1 CDS 2266958 2267034 2266958 ID=cds.MS.gene012600.t1;Parent=MS.gene012600.t1
chr8.1 exon 2267203 2268192 2267203 ID=MS.gene012600.t1.exon5;Parent=MS.gene012600.t1
chr8.1 CDS 2267203 2268192 2267203 ID=cds.MS.gene012600.t1;Parent=MS.gene012600.t1
Gene Sequence

>MS.gene012600

ATGATGGTTGTGGAGGATAGTTTCGGTGTTGACGATGTTTTAGGAGAAGGTTTCCCGGCGGGTATGCGTGTTCTGGCAGTTGATGACGATCCAACTTATCTCAAAGTGCTGGAGAAGCAACTTCTCACATGCAACTATAATGGTTCGTTGCCTTTCTTTTTCGTTCATTCAATATGATTACGCATTGATTATTCTTTATGTTTACTATTCTCCTCTCATGCAACGGTGTAAACATATATTGGAAGTAGCTTTGATATAAGGAAACCTTTTTTTTTTCTTTGAGGCGTTGATATAGTAAACCTTAGTTTTTTTTAGTAAATTGGTGATTAGGTTAGTTTTCACGGTTTGAACGGTTGTGAATCGGTTAAAAAATCACACCAATAAAACTTATTTGTGGAGCAAATGAATCAAGCAACGAAAACAACGTGGGTGGCAGCTCTAAACACAATCAAAAGATAGAACAACAAAAGAGAAAGAACACACAAAAATTTGTTTGTTCAGTTCGGTCCAATACTGACCTACTTTGGAGGAGAGAGCAGCTCTCCGTACCACTATAACTATTGAGTAACTTTACAAACCTAATTCATTCTTTTGCCAAAGTCCCGAATCTCTTTCCGTGACCAAGAGACTCAATCCTAATAGTGTTTCTCCAAGGTGAATCAATGATGACTCAATCCCAACCCTAGTGTTTGTTGCAAAGAGAAAACTCTACAAACCCTAGTTTTGTGGTGGTTTCTAAACCCTTGTTTTTCTACTCTCTACATCTCTCACCTTTCATCTGATACAAGGTTTATATTTATAGTAAAAGCATCCCTAAAAAATTGTAACACATCTCATGCTGAAAATACGTTTCTGTTTTTTCTGCATCATTAAAAACCGGACTCCGATTTTCTCACTTCGGGCGCCGATTTTTTACGAGACAGAAGTCTCAAAACCACACCTAAAATTGGGCCTCGATTGCTCCAAATCGGCCGTCGATTTTGGCAGTTTCAGAAACACCATGTTTAAATCATACTAGAACATGAACTACAACCTATTTATCATAGGCTATGTAAATGTGTCCGGAGTCTGATATGTATTAGTGTCTGATACAATTTGACGCATGTCATGTGTTAGTGTATATTTATGCTTCATAGGTTATAAGTCTTCTAGTGTCCCGAATGTCTAAGCTACCTCAAAAAAAAAAAAAAAAAAACTACCAGTAAAGCTACCTACTCACACACATATCAGTTGACAATTTTCTTGATTTTAAATACATAAATTCATTCTTTTGCCAAGACTGTTGTGGGTGTGTTTGTTTTGGCTTAAAATAAAATTATTTTGTTTTTATAAAATATAAATATTATTTTTGAGATCTATAAAAAAAAAAGCCGAAGATAATTTCCATTTATTTACTATCATAAAAATAATTTTTTTAAGATTTAAAGCACTTACACTTGAGTTTCTTGTTTTTTAAAAGAAAAATTGATTTTGAAAAAGCTATTTGAATAACTTTTCGATTTGAGGCTAAAAATTACTCCATTTTTTTAACAAAATATTTTTAAAAAAAATCTGAAACAAACACTATAAAATTATATAAGTATTTTTTTGGTTTAAAAAATTGATTTTTTTTTTCTTTTAAAAAAATCCAAAACAAAAGGGTCTGTGTTTTCTCTACTTCTAAAGTTGAAATTTTAAACTTTTTAATGATTATTACTGCTTTATTGGGCCTGACATATTAGTGATTTTTTTTTCCTTCTTTTTCTGAATGGCAAAAGAAAATTTTATTAAATAAGATGATACTAAATCACTAGCTTGATTCTTGGTTGCATTGTTGCAGTTACTACAACTACGAAGTCATTGGAAGCGCTTGAATTGTTGAGAGAAAAGAAGGATATGTTTGACCTTGTAATTAGTGATGTTAGCATGCCAGACATGGATGGCTTCAAGCTCCTTCAGCAAGTCGGACTTGAAATGGACCTACCTTTCATCAGTAAGCTCACACACCTTTCTCTTAAAATCTGTTTTGTTTACCTAATTAAGATCCATTTCTTATATTCAGATTTTTTGTGTGTGTGATTTATAGTGTTGTCGGTAAATGATGACATAGAGAAGGTGATGAAGAGTGTGATGCATGGTGCTTGCAACTATCTAGTGAAACCGATTCGAATGGAAGAGCTTAAGAGCATATGGCAACATGTAGTTAGAAAGAAGATTGAAAGCAAGGATCAAAATCAAGGTATCATTAGTGATGGGGTATATGGTCAAGACACCTCATCCGAAAATATTGCTAACAAGAATAAAACGCATGGACAAAAAAGAAAGGTACAAAGTGAGGAGGAAGAAGCAGAACAAGATAATGATGAGAAACGTTCGCCTCAAAAGAAGCCTCGTTTAGTTTGGGATCATGAGTTGCATCGAAAATTTGTTTCTGCAGTTAATCTTGTCGGTCTTGACAGTGAGTTTATGTGACAATGAAATTATTTTTTTACTTTGCTAATTTGATGAATGATTCTTAAATATGGATATTATTGTTCCTAATATGTAGTTTCTTCAACTATTATTGCAGAGGCTTCGCCTAAGAAAATACTTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTATCCAGCCATTTGCAGGTACAAATTATATATAACTTTCCCTTTTGTCAAAAAATCTCAAACTAGTTTATCATTAAAATATTTGATCACCTCCTTTTTGCAAATACGGTTGAAACTTCAACAAGCAAGTTTATGAAACGTAAGTATAAAAACTGTGTGTAACCTCATTTTCATTTTCGATTGCAGAGATACAGAATTGATATCAAATGGCTATCTAAACAGGATAGAGGAGATGATGCGTTGGATCCCTACCAGCAAAAGGGTTCAGTAGGTGGATATGGGGATTTTTGCACACTGCCAGCATATGCATCCAATGACATGTTTTGTCGGCTGAACACACCATCCAGTTTGAACTTGGAAGGAATGAGTTCTTCTGCACTAGTCCCTCCACTTCAGTCTCATAACATTCCCAATTTCGAGACACCAATGTTTAATGAAAGTGAAAGTTCGAGTTCTTTACATGGCATTCAAACGTCAATGGAAATTAACCAGTTTCAGCAGAATATTTATCCGCCTGATAACATTAATTTAAGTCCAATTGATGATTCAAATGCAGTTACAGATTCCTCTGGCTTCCAAGACATCAGAGCCACTGTCAATAATGCAAATGTTTCTCTTTCTTGCATCGCAAGCAATCACATACAAACACATAAATCAGAAGCATTTATAAATCACTCTCCTGTTGAAGGTTCTGCTGTGAAAACACAACCTTTTAACCCTGTCAGAAGTGGTTCCTCTAACTTTGCTTCCAATTCTGTTCCATTGAGTGAGGATTTTAACAATGATCAAATGTTGCACAATAACTACAAGTTTACTTCTCCCAGTTCTCATTTTTCTTCGACAGACATCGTTGCTGTTCCTTTGGAGGAAACGATGCAATGTCAAGATGGCTTACTTGGGAATGTTATAAATGCTCCATGTTACTCACAACATCAAAATGCAAGTTCCTCCTTCAACAATACCTTGGATTATCTTGCTTCTTCTAATGGAGACACTAGTTCCATGGTACAAAGTTTAGCCCAAACTAATAGTTCATTAATCACTCAGATGCCTCAAGTTAAGAAGTTCTATTCGGATCAAGGAATCATGGAATCAAATGGTGATTGCTTTATTGAGCAATTGCTTAATGTAGATGGATTCATTCAGAATAGTCGTGTGCCTTGGACGACACAATAA
Protein sequence

>MS.gene012600.t1

MMVVEDSFGVDDVLGEGFPAGMRVLAVDDDPTYLKVLEKQLLTCNYNVTTTTKSLEALELLREKKDMFDLVISDVSMPDMDGFKLLQQVGLEMDLPFIMLSVNDDIEKVMKSVMHGACNYLVKPIRMEELKSIWQHVVRKKIESKDQNQGIISDGVYGQDTSSENIANKNKTHGQKRKVQSEEEEAEQDNDEKRSPQKKPRLVWDHELHRKFVSAVNLVGLDKASPKKILDLMNVEGLTRENVSSHLQRYRIDIKWLSKQDRGDDALDPYQQKGSVGGYGDFCTLPAYASNDMFCRLNTPSSLNLEGMSSSALVPPLQSHNIPNFETPMFNESESSSSLHGIQTSMEINQFQQNIYPPDNINLSPIDDSNAVTDSSGFQDIRATVNNANVSLSCIASNHIQTHKSEAFINHSPVEGSAVKTQPFNPVRSGSSNFASNSVPLSEDFNNDQMLHNNYKFTSPSSHFSSTDIVAVPLEETMQCQDGLLGNVINAPCYSQHQNASSSFNNTLDYLASSNGDTSSMVQSLAQTNSSLITQMPQVKKFYSDQGIMESNGDCFIEQLLNVDGFIQNSRVPWTTQ